Multiple sequence alignment - TraesCS2A01G220800

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS2A01G220800 chr2A 100.000 4133 0 0 1 4133 209387716 209383584 0.000000e+00 7633.0
1 TraesCS2A01G220800 chr2A 81.354 724 95 28 2779 3485 768729493 768730193 1.680000e-153 553.0
2 TraesCS2A01G220800 chr2A 82.777 569 76 11 2816 3372 768982766 768983324 4.800000e-134 488.0
3 TraesCS2A01G220800 chr2A 91.071 56 5 0 2264 2319 768728780 768728835 4.430000e-10 76.8
4 TraesCS2A01G220800 chr2D 94.039 2181 80 27 1413 3564 194753744 194751585 0.000000e+00 3262.0
5 TraesCS2A01G220800 chr2D 92.917 1313 40 23 33 1323 194755542 194754261 0.000000e+00 1860.0
6 TraesCS2A01G220800 chr2D 83.077 390 53 10 3740 4126 641018417 641018796 3.960000e-90 342.0
7 TraesCS2A01G220800 chr2D 77.222 540 83 21 2264 2780 643852988 643853510 3.150000e-71 279.0
8 TraesCS2A01G220800 chr2D 92.466 146 11 0 3565 3710 194751480 194751335 4.190000e-50 209.0
9 TraesCS2A01G220800 chr2D 87.288 118 3 8 1288 1402 194754265 194754157 1.560000e-24 124.0
10 TraesCS2A01G220800 chr2D 86.408 103 13 1 3037 3139 643780408 643780509 1.210000e-20 111.0
11 TraesCS2A01G220800 chr2D 89.394 66 5 2 3689 3754 194751324 194751261 9.520000e-12 82.4
12 TraesCS2A01G220800 chr2B 92.126 2159 97 17 1434 3564 250730377 250728264 0.000000e+00 2977.0
13 TraesCS2A01G220800 chr2B 95.828 791 11 7 1 779 250735946 250735166 0.000000e+00 1258.0
14 TraesCS2A01G220800 chr2B 87.894 603 34 15 788 1379 250731045 250730471 0.000000e+00 673.0
15 TraesCS2A01G220800 chr2B 82.199 573 81 15 2820 3381 793230234 793229672 1.340000e-129 473.0
16 TraesCS2A01G220800 chr2B 90.141 142 14 0 3565 3706 250728202 250728061 7.060000e-43 185.0
17 TraesCS2A01G220800 chr2B 92.424 66 3 2 3689 3754 250728045 250727982 4.400000e-15 93.5
18 TraesCS2A01G220800 chr2B 93.333 60 4 0 2264 2323 793259129 793259070 5.690000e-14 89.8
19 TraesCS2A01G220800 chr4D 84.715 386 47 10 3743 4124 473986021 473985644 3.900000e-100 375.0
20 TraesCS2A01G220800 chr5D 84.156 385 49 10 3746 4126 465969355 465968979 3.040000e-96 363.0
21 TraesCS2A01G220800 chr5D 83.463 387 51 8 3743 4126 557550916 557551292 8.500000e-92 348.0
22 TraesCS2A01G220800 chr3D 83.846 390 46 13 3743 4126 176529040 176529418 5.080000e-94 355.0
23 TraesCS2A01G220800 chr3D 83.247 388 48 13 3743 4126 40251158 40250784 1.420000e-89 340.0
24 TraesCS2A01G220800 chr3D 82.990 388 54 8 3743 4126 284991672 284992051 1.420000e-89 340.0
25 TraesCS2A01G220800 chr3D 94.231 52 3 0 339 390 560151719 560151668 3.420000e-11 80.5
26 TraesCS2A01G220800 chr6D 83.290 389 53 11 3743 4126 314084467 314084086 8.500000e-92 348.0
27 TraesCS2A01G220800 chr7D 82.776 389 52 14 3743 4127 484323246 484323623 2.380000e-87 333.0
28 TraesCS2A01G220800 chr1A 90.361 83 7 1 305 387 34933859 34933778 1.570000e-19 108.0
29 TraesCS2A01G220800 chr7B 85.714 91 11 2 305 395 458530773 458530685 1.220000e-15 95.3
30 TraesCS2A01G220800 chr1D 90.741 54 5 0 342 395 364473149 364473096 5.730000e-09 73.1


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS2A01G220800 chr2A 209383584 209387716 4132 True 7633.000 7633 100.00000 1 4133 1 chr2A.!!$R1 4132
1 TraesCS2A01G220800 chr2A 768982766 768983324 558 False 488.000 488 82.77700 2816 3372 1 chr2A.!!$F1 556
2 TraesCS2A01G220800 chr2A 768728780 768730193 1413 False 314.900 553 86.21250 2264 3485 2 chr2A.!!$F2 1221
3 TraesCS2A01G220800 chr2D 194751261 194755542 4281 True 1107.480 3262 91.22080 33 3754 5 chr2D.!!$R1 3721
4 TraesCS2A01G220800 chr2D 643852988 643853510 522 False 279.000 279 77.22200 2264 2780 1 chr2D.!!$F3 516
5 TraesCS2A01G220800 chr2B 250735166 250735946 780 True 1258.000 1258 95.82800 1 779 1 chr2B.!!$R1 778
6 TraesCS2A01G220800 chr2B 250727982 250731045 3063 True 982.125 2977 90.64625 788 3754 4 chr2B.!!$R4 2966
7 TraesCS2A01G220800 chr2B 793229672 793230234 562 True 473.000 473 82.19900 2820 3381 1 chr2B.!!$R2 561

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
697 712 0.105194 TGGGAGGAAGTGGTGTGAGA 60.105 55.0 0.00 0.0 0.00 3.27 F
1245 1279 0.106967 GGGACCTTCCATTCTCTGCC 60.107 60.0 0.00 0.0 38.64 4.85 F
1733 2210 0.307453 TTCAGATGCGTGTGTGTTGC 59.693 50.0 2.62 0.0 0.00 4.17 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1574 2050 0.041238 TCCACACAAAAACCCACCCA 59.959 50.0 0.0 0.0 0.0 4.51 R
3111 4030 0.396435 AGACCTCAAACATGACGCCA 59.604 50.0 0.0 0.0 0.0 5.69 R
3315 4247 0.721718 GTTCGGATTTGCAGACCTCG 59.278 55.0 0.0 0.0 0.0 4.63 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
74 87 4.385405 GCAGAGGCTGAGCACCGT 62.385 66.667 6.82 0.00 36.96 4.83
279 292 4.489771 CGCATCTCCACCCCCACC 62.490 72.222 0.00 0.00 0.00 4.61
461 474 4.816984 GACGGGCGAGGAGGAGGA 62.817 72.222 0.00 0.00 0.00 3.71
462 475 4.824515 ACGGGCGAGGAGGAGGAG 62.825 72.222 0.00 0.00 0.00 3.69
697 712 0.105194 TGGGAGGAAGTGGTGTGAGA 60.105 55.000 0.00 0.00 0.00 3.27
708 723 2.036387 TGGTGTGAGAAGGAAGACGAA 58.964 47.619 0.00 0.00 0.00 3.85
753 772 4.117372 GTTGCGCGTCTCGGTTCG 62.117 66.667 8.43 0.00 38.94 3.95
779 798 0.541764 TTGGCCCTGCGGAATTTTCT 60.542 50.000 0.00 0.00 0.00 2.52
780 799 0.541764 TGGCCCTGCGGAATTTTCTT 60.542 50.000 0.00 0.00 0.00 2.52
781 800 0.608130 GGCCCTGCGGAATTTTCTTT 59.392 50.000 0.00 0.00 0.00 2.52
783 802 1.713597 CCCTGCGGAATTTTCTTTGC 58.286 50.000 0.00 0.00 0.00 3.68
784 803 1.339711 CCTGCGGAATTTTCTTTGCG 58.660 50.000 0.00 0.00 42.46 4.85
785 804 1.335872 CCTGCGGAATTTTCTTTGCGT 60.336 47.619 0.00 0.00 41.72 5.24
786 805 1.978782 CTGCGGAATTTTCTTTGCGTC 59.021 47.619 0.00 0.00 41.72 5.19
837 859 0.899720 TTCCAAACTCCGCTACCGAT 59.100 50.000 0.00 0.00 36.29 4.18
860 882 1.835267 TACGGGTCCACAGCACAGT 60.835 57.895 0.00 0.00 0.00 3.55
946 968 1.534729 GCTACCCAACTCCAAACAGG 58.465 55.000 0.00 0.00 39.47 4.00
1069 1098 0.468958 TGTTTTAAGCCCAGCCAGCA 60.469 50.000 0.00 0.00 0.00 4.41
1098 1132 0.877649 CTCCCCATCGTGCATCTTCG 60.878 60.000 0.00 0.00 0.00 3.79
1105 1139 1.063412 TCGTGCATCTTCGTTCGTCG 61.063 55.000 0.00 0.00 41.41 5.12
1133 1167 1.221021 GGTACGGAAGGGAAGCAGG 59.779 63.158 0.00 0.00 0.00 4.85
1226 1260 1.810030 GCAACGCGGAGGAAGGTAG 60.810 63.158 12.47 0.00 0.00 3.18
1230 1264 2.783288 CGCGGAGGAAGGTAGGGAC 61.783 68.421 0.00 0.00 0.00 4.46
1245 1279 0.106967 GGGACCTTCCATTCTCTGCC 60.107 60.000 0.00 0.00 38.64 4.85
1269 1303 6.929049 CCTCCCTTGTTTTTATTGGTTTCTTC 59.071 38.462 0.00 0.00 0.00 2.87
1275 1309 6.512297 TGTTTTTATTGGTTTCTTCTGCCTC 58.488 36.000 0.00 0.00 0.00 4.70
1296 1330 2.154462 CCTGCTTGTGATCCTCGTTTT 58.846 47.619 0.00 0.00 0.00 2.43
1331 1396 5.563842 GTGGATTTCTTCTTCATAGCGTTG 58.436 41.667 0.00 0.00 0.00 4.10
1332 1397 4.094887 TGGATTTCTTCTTCATAGCGTTGC 59.905 41.667 0.00 0.00 0.00 4.17
1333 1398 4.333926 GGATTTCTTCTTCATAGCGTTGCT 59.666 41.667 0.00 0.00 43.41 3.91
1334 1399 4.928661 TTTCTTCTTCATAGCGTTGCTC 57.071 40.909 0.00 0.00 40.44 4.26
1335 1400 3.876274 TCTTCTTCATAGCGTTGCTCT 57.124 42.857 0.00 0.00 40.44 4.09
1336 1401 3.775202 TCTTCTTCATAGCGTTGCTCTC 58.225 45.455 0.00 0.00 40.44 3.20
1337 1402 3.445450 TCTTCTTCATAGCGTTGCTCTCT 59.555 43.478 0.00 0.00 40.44 3.10
1338 1403 3.428746 TCTTCATAGCGTTGCTCTCTC 57.571 47.619 0.00 0.00 40.44 3.20
1339 1404 2.099921 TCTTCATAGCGTTGCTCTCTCC 59.900 50.000 0.00 0.00 40.44 3.71
1342 1407 1.739338 ATAGCGTTGCTCTCTCCCCG 61.739 60.000 0.00 0.00 40.44 5.73
1352 1417 1.157276 CTCTCCCCGATCCCCATCT 59.843 63.158 0.00 0.00 0.00 2.90
1406 1478 4.446413 CGGCCGCTTAGGGTTCGT 62.446 66.667 14.67 0.00 41.48 3.85
1407 1479 2.046604 GGCCGCTTAGGGTTCGTT 60.047 61.111 0.00 0.00 41.48 3.85
1408 1480 2.396157 GGCCGCTTAGGGTTCGTTG 61.396 63.158 0.00 0.00 41.48 4.10
1409 1481 3.035576 GCCGCTTAGGGTTCGTTGC 62.036 63.158 0.00 0.00 41.48 4.17
1410 1482 1.375523 CCGCTTAGGGTTCGTTGCT 60.376 57.895 0.00 0.00 35.97 3.91
1411 1483 1.359459 CCGCTTAGGGTTCGTTGCTC 61.359 60.000 0.00 0.00 35.97 4.26
1430 1903 3.461773 CCGCCGTCCTGACCTCAT 61.462 66.667 0.00 0.00 0.00 2.90
1463 1936 0.320683 TCCACGTCAGCATCCACTTG 60.321 55.000 0.00 0.00 0.00 3.16
1505 1978 3.388497 AGGTCTGGACAGATCTGCA 57.612 52.632 22.83 12.28 46.52 4.41
1573 2049 4.946157 ACCATAAGGATTCTGCTTGTTCAG 59.054 41.667 0.00 0.00 38.69 3.02
1574 2050 4.946157 CCATAAGGATTCTGCTTGTTCAGT 59.054 41.667 0.00 0.00 36.89 3.41
1575 2051 5.163683 CCATAAGGATTCTGCTTGTTCAGTG 60.164 44.000 0.00 0.00 36.89 3.66
1576 2052 2.787994 AGGATTCTGCTTGTTCAGTGG 58.212 47.619 0.00 0.00 35.63 4.00
1733 2210 0.307453 TTCAGATGCGTGTGTGTTGC 59.693 50.000 2.62 0.00 0.00 4.17
1770 2247 6.665992 TTGAGGTAGTACAGATGTTGAGTT 57.334 37.500 2.06 0.00 0.00 3.01
1829 2306 3.106672 CCGCGTACTTAGTGAATGACTC 58.893 50.000 4.92 0.00 35.96 3.36
1872 2349 6.071952 TGGATGGAGCTTTCTGTTTTTGTATC 60.072 38.462 0.00 0.00 0.00 2.24
2065 2546 3.099905 TGTAGCTTATCTGGACAGCTGT 58.900 45.455 21.88 21.88 43.85 4.40
2088 2569 0.679960 ATGGCACCCTTAGTTTCGGC 60.680 55.000 0.00 0.00 0.00 5.54
2114 2595 7.433979 GTTTACTGGAAATTCGTTAAAATGCG 58.566 34.615 0.00 0.00 0.00 4.73
2328 2809 4.218686 ACCCGCTTTGCACCCCTT 62.219 61.111 0.00 0.00 0.00 3.95
2443 2949 4.038042 TCAAACAAACACACCACAAGTCAA 59.962 37.500 0.00 0.00 0.00 3.18
2470 2976 1.548986 GCACATATGCGCCTTTCAAC 58.451 50.000 4.18 0.00 43.33 3.18
2750 3266 9.874205 ATCATTCTTGCTATTCTTCTCTATAGC 57.126 33.333 0.00 0.00 45.97 2.97
3033 3952 2.970974 GAAACCACAGCTGAGCGCC 61.971 63.158 23.35 0.77 40.39 6.53
3111 4030 3.562176 CCATTCCTCTTGCTACCAGGTTT 60.562 47.826 0.00 0.00 0.00 3.27
3184 4104 0.534203 ATTGCTGTGACGGTTCCGTT 60.534 50.000 17.90 2.44 43.08 4.44
3189 4109 1.010462 GTGACGGTTCCGTTGTTGC 60.010 57.895 17.90 5.79 43.08 4.17
3257 4179 9.976511 CAATCCTGCAGATTTTATGAATAATGT 57.023 29.630 17.39 0.00 42.86 2.71
3315 4247 7.892609 ACATAATTTTGGGTCTTCTTTGGTAC 58.107 34.615 0.89 0.00 0.00 3.34
3530 4467 2.765807 CCCGCCTGATCCCTGAGT 60.766 66.667 0.00 0.00 0.00 3.41
3556 4500 2.214920 ACCCGTGGACAACTCTCCC 61.215 63.158 0.00 0.00 0.00 4.30
3557 4501 1.913762 CCCGTGGACAACTCTCCCT 60.914 63.158 0.00 0.00 0.00 4.20
3561 4505 2.224159 TGGACAACTCTCCCTGGGC 61.224 63.158 8.22 0.00 0.00 5.36
3595 4642 2.177580 CGTGGTTGCTCCGTTGTGT 61.178 57.895 0.00 0.00 39.52 3.72
3654 4701 2.260434 GGCTGCTGTACCGACGAA 59.740 61.111 0.00 0.00 0.00 3.85
3658 4705 0.433492 CTGCTGTACCGACGAAAACG 59.567 55.000 0.00 0.00 0.00 3.60
3662 4709 1.729131 GTACCGACGAAAACGCCGA 60.729 57.895 0.00 0.00 0.00 5.54
3745 4857 2.596346 TCTCCATCTGAGATCTGAGGC 58.404 52.381 9.47 0.00 45.29 4.70
3746 4858 1.619827 CTCCATCTGAGATCTGAGGCC 59.380 57.143 9.47 0.00 44.42 5.19
3748 4860 1.767088 CCATCTGAGATCTGAGGCCAA 59.233 52.381 9.47 0.00 0.00 4.52
3750 4862 2.244486 TCTGAGATCTGAGGCCAACT 57.756 50.000 9.47 0.00 0.00 3.16
3751 4863 2.106566 TCTGAGATCTGAGGCCAACTC 58.893 52.381 9.47 4.79 46.78 3.01
3752 4864 1.138661 CTGAGATCTGAGGCCAACTCC 59.861 57.143 5.01 0.00 46.01 3.85
3753 4865 1.198713 GAGATCTGAGGCCAACTCCA 58.801 55.000 5.01 0.00 46.01 3.86
3754 4866 0.908198 AGATCTGAGGCCAACTCCAC 59.092 55.000 5.01 0.00 46.01 4.02
3755 4867 0.107459 GATCTGAGGCCAACTCCACC 60.107 60.000 5.01 0.00 46.01 4.61
3756 4868 1.903877 ATCTGAGGCCAACTCCACCG 61.904 60.000 5.01 0.00 46.01 4.94
3757 4869 4.329545 TGAGGCCAACTCCACCGC 62.330 66.667 5.01 0.00 46.01 5.68
3772 4884 3.991051 CGCGCGACCCCATCCTAT 61.991 66.667 28.94 0.00 0.00 2.57
3773 4885 2.048127 GCGCGACCCCATCCTATC 60.048 66.667 12.10 0.00 0.00 2.08
3774 4886 2.657237 CGCGACCCCATCCTATCC 59.343 66.667 0.00 0.00 0.00 2.59
3775 4887 2.657237 GCGACCCCATCCTATCCG 59.343 66.667 0.00 0.00 0.00 4.18
3776 4888 2.943978 GCGACCCCATCCTATCCGG 61.944 68.421 0.00 0.00 0.00 5.14
3784 4896 3.773370 TCCTATCCGGATGCGTCC 58.227 61.111 27.55 15.54 41.40 4.79
3785 4897 1.906824 TCCTATCCGGATGCGTCCC 60.907 63.158 27.55 1.92 41.83 4.46
3786 4898 1.908793 CCTATCCGGATGCGTCCCT 60.909 63.158 27.55 6.95 41.83 4.20
3787 4899 1.472662 CCTATCCGGATGCGTCCCTT 61.473 60.000 27.55 6.77 41.83 3.95
3788 4900 0.038159 CTATCCGGATGCGTCCCTTC 60.038 60.000 27.55 0.00 41.83 3.46
3789 4901 1.802337 TATCCGGATGCGTCCCTTCG 61.802 60.000 27.55 7.33 41.83 3.79
3790 4902 3.833645 CCGGATGCGTCCCTTCGA 61.834 66.667 19.51 0.00 41.83 3.71
3791 4903 2.278857 CGGATGCGTCCCTTCGAG 60.279 66.667 19.51 0.00 41.83 4.04
3792 4904 2.107141 GGATGCGTCCCTTCGAGG 59.893 66.667 14.58 0.00 38.69 4.63
3797 4909 4.371975 CGTCCCTTCGAGGCAAAA 57.628 55.556 0.00 0.00 32.73 2.44
3798 4910 1.866925 CGTCCCTTCGAGGCAAAAC 59.133 57.895 0.00 0.00 32.73 2.43
3799 4911 1.866925 GTCCCTTCGAGGCAAAACG 59.133 57.895 0.00 0.00 32.73 3.60
3800 4912 1.302192 TCCCTTCGAGGCAAAACGG 60.302 57.895 0.00 0.00 32.73 4.44
3801 4913 1.302192 CCCTTCGAGGCAAAACGGA 60.302 57.895 0.00 0.00 32.73 4.69
3802 4914 1.574702 CCCTTCGAGGCAAAACGGAC 61.575 60.000 0.00 0.00 32.73 4.79
3803 4915 0.882927 CCTTCGAGGCAAAACGGACA 60.883 55.000 0.00 0.00 0.00 4.02
3804 4916 0.941542 CTTCGAGGCAAAACGGACAA 59.058 50.000 0.00 0.00 0.00 3.18
3805 4917 1.332375 CTTCGAGGCAAAACGGACAAA 59.668 47.619 0.00 0.00 0.00 2.83
3806 4918 1.380524 TCGAGGCAAAACGGACAAAA 58.619 45.000 0.00 0.00 0.00 2.44
3807 4919 1.064357 TCGAGGCAAAACGGACAAAAC 59.936 47.619 0.00 0.00 0.00 2.43
3808 4920 1.202200 CGAGGCAAAACGGACAAAACA 60.202 47.619 0.00 0.00 0.00 2.83
3809 4921 2.459934 GAGGCAAAACGGACAAAACAG 58.540 47.619 0.00 0.00 0.00 3.16
3810 4922 2.096248 AGGCAAAACGGACAAAACAGA 58.904 42.857 0.00 0.00 0.00 3.41
3811 4923 2.159296 AGGCAAAACGGACAAAACAGAC 60.159 45.455 0.00 0.00 0.00 3.51
3812 4924 1.843753 GCAAAACGGACAAAACAGACG 59.156 47.619 0.00 0.00 0.00 4.18
3813 4925 2.446282 CAAAACGGACAAAACAGACGG 58.554 47.619 0.00 0.00 0.00 4.79
3814 4926 0.379316 AAACGGACAAAACAGACGGC 59.621 50.000 0.00 0.00 0.00 5.68
3815 4927 1.441732 AACGGACAAAACAGACGGCC 61.442 55.000 0.00 0.00 0.00 6.13
3816 4928 1.890041 CGGACAAAACAGACGGCCA 60.890 57.895 2.24 0.00 0.00 5.36
3817 4929 1.841663 CGGACAAAACAGACGGCCAG 61.842 60.000 2.24 0.00 0.00 4.85
3818 4930 1.282875 GACAAAACAGACGGCCAGC 59.717 57.895 2.24 0.00 0.00 4.85
3819 4931 2.252260 CAAAACAGACGGCCAGCG 59.748 61.111 2.24 0.00 0.00 5.18
3820 4932 3.660111 AAAACAGACGGCCAGCGC 61.660 61.111 2.24 0.00 0.00 5.92
3836 4948 3.276846 GCGCGGGCGTAAATGGAT 61.277 61.111 9.31 0.00 42.09 3.41
3837 4949 2.830285 GCGCGGGCGTAAATGGATT 61.830 57.895 9.31 0.00 42.09 3.01
3838 4950 1.725066 CGCGGGCGTAAATGGATTT 59.275 52.632 4.64 0.00 34.35 2.17
3839 4951 0.099791 CGCGGGCGTAAATGGATTTT 59.900 50.000 4.64 0.00 34.35 1.82
3840 4952 1.468395 CGCGGGCGTAAATGGATTTTT 60.468 47.619 4.64 0.00 34.35 1.94
3841 4953 1.923864 GCGGGCGTAAATGGATTTTTG 59.076 47.619 0.00 0.00 0.00 2.44
3842 4954 2.672760 GCGGGCGTAAATGGATTTTTGT 60.673 45.455 0.00 0.00 0.00 2.83
3843 4955 3.580731 CGGGCGTAAATGGATTTTTGTT 58.419 40.909 0.00 0.00 0.00 2.83
3844 4956 3.610677 CGGGCGTAAATGGATTTTTGTTC 59.389 43.478 0.00 0.00 0.00 3.18
3845 4957 3.610677 GGGCGTAAATGGATTTTTGTTCG 59.389 43.478 0.00 0.00 0.00 3.95
3846 4958 4.231439 GGCGTAAATGGATTTTTGTTCGT 58.769 39.130 0.00 0.00 0.00 3.85
3847 4959 4.682401 GGCGTAAATGGATTTTTGTTCGTT 59.318 37.500 0.00 0.00 0.00 3.85
3848 4960 5.176039 GGCGTAAATGGATTTTTGTTCGTTT 59.824 36.000 0.00 0.00 0.00 3.60
3849 4961 6.292435 GGCGTAAATGGATTTTTGTTCGTTTT 60.292 34.615 0.00 0.00 0.00 2.43
3850 4962 7.120634 GCGTAAATGGATTTTTGTTCGTTTTT 58.879 30.769 0.00 0.00 0.00 1.94
3851 4963 7.109532 GCGTAAATGGATTTTTGTTCGTTTTTG 59.890 33.333 0.00 0.00 0.00 2.44
3852 4964 8.111224 CGTAAATGGATTTTTGTTCGTTTTTGT 58.889 29.630 0.00 0.00 0.00 2.83
3853 4965 9.416058 GTAAATGGATTTTTGTTCGTTTTTGTC 57.584 29.630 0.00 0.00 0.00 3.18
3854 4966 6.597262 ATGGATTTTTGTTCGTTTTTGTCC 57.403 33.333 0.00 0.00 0.00 4.02
3855 4967 4.563184 TGGATTTTTGTTCGTTTTTGTCCG 59.437 37.500 0.00 0.00 0.00 4.79
3856 4968 3.974585 TTTTTGTTCGTTTTTGTCCGC 57.025 38.095 0.00 0.00 0.00 5.54
3857 4969 2.923605 TTTGTTCGTTTTTGTCCGCT 57.076 40.000 0.00 0.00 0.00 5.52
3858 4970 2.923605 TTGTTCGTTTTTGTCCGCTT 57.076 40.000 0.00 0.00 0.00 4.68
3859 4971 2.923605 TGTTCGTTTTTGTCCGCTTT 57.076 40.000 0.00 0.00 0.00 3.51
3860 4972 3.219052 TGTTCGTTTTTGTCCGCTTTT 57.781 38.095 0.00 0.00 0.00 2.27
3861 4973 2.917971 TGTTCGTTTTTGTCCGCTTTTG 59.082 40.909 0.00 0.00 0.00 2.44
3862 4974 3.172824 GTTCGTTTTTGTCCGCTTTTGA 58.827 40.909 0.00 0.00 0.00 2.69
3863 4975 2.788030 TCGTTTTTGTCCGCTTTTGAC 58.212 42.857 0.00 0.00 0.00 3.18
3864 4976 1.849829 CGTTTTTGTCCGCTTTTGACC 59.150 47.619 0.00 0.00 31.60 4.02
3865 4977 2.198406 GTTTTTGTCCGCTTTTGACCC 58.802 47.619 0.00 0.00 31.60 4.46
3866 4978 1.475403 TTTTGTCCGCTTTTGACCCA 58.525 45.000 0.00 0.00 31.60 4.51
3867 4979 1.698506 TTTGTCCGCTTTTGACCCAT 58.301 45.000 0.00 0.00 31.60 4.00
3868 4980 1.243902 TTGTCCGCTTTTGACCCATC 58.756 50.000 0.00 0.00 31.60 3.51
3869 4981 0.109532 TGTCCGCTTTTGACCCATCA 59.890 50.000 0.00 0.00 31.60 3.07
3870 4982 0.521735 GTCCGCTTTTGACCCATCAC 59.478 55.000 0.00 0.00 33.38 3.06
3871 4983 0.953471 TCCGCTTTTGACCCATCACG 60.953 55.000 0.00 0.00 33.38 4.35
3872 4984 1.501741 CGCTTTTGACCCATCACGG 59.498 57.895 0.00 0.00 33.38 4.94
3873 4985 1.212751 GCTTTTGACCCATCACGGC 59.787 57.895 0.00 0.00 33.38 5.68
3874 4986 1.883021 CTTTTGACCCATCACGGCC 59.117 57.895 0.00 0.00 33.38 6.13
3875 4987 1.595093 CTTTTGACCCATCACGGCCC 61.595 60.000 0.00 0.00 33.38 5.80
3876 4988 2.359015 TTTTGACCCATCACGGCCCA 62.359 55.000 0.00 0.00 33.38 5.36
3877 4989 2.359015 TTTGACCCATCACGGCCCAA 62.359 55.000 0.00 0.00 33.38 4.12
3878 4990 2.438434 GACCCATCACGGCCCAAG 60.438 66.667 0.00 0.00 0.00 3.61
3879 4991 3.256960 ACCCATCACGGCCCAAGT 61.257 61.111 0.00 0.00 0.00 3.16
3880 4992 2.035626 CCCATCACGGCCCAAGTT 59.964 61.111 0.00 0.00 0.00 2.66
3881 4993 1.606313 CCCATCACGGCCCAAGTTT 60.606 57.895 0.00 0.00 0.00 2.66
3882 4994 1.586028 CCATCACGGCCCAAGTTTG 59.414 57.895 0.00 0.00 0.00 2.93
3883 4995 1.080569 CATCACGGCCCAAGTTTGC 60.081 57.895 0.00 0.00 0.00 3.68
3884 4996 2.625823 ATCACGGCCCAAGTTTGCG 61.626 57.895 0.00 0.00 0.00 4.85
3885 4997 4.999939 CACGGCCCAAGTTTGCGC 63.000 66.667 0.00 0.00 0.00 6.09
3890 5002 3.977244 CCCAAGTTTGCGCCGCTT 61.977 61.111 11.67 3.41 0.00 4.68
3891 5003 2.027460 CCAAGTTTGCGCCGCTTT 59.973 55.556 11.67 0.00 0.00 3.51
3892 5004 1.591327 CCAAGTTTGCGCCGCTTTT 60.591 52.632 11.67 0.00 0.00 2.27
3893 5005 1.559336 CAAGTTTGCGCCGCTTTTG 59.441 52.632 11.67 5.88 0.00 2.44
3894 5006 1.591327 AAGTTTGCGCCGCTTTTGG 60.591 52.632 11.67 0.00 0.00 3.28
3895 5007 2.969677 AAGTTTGCGCCGCTTTTGGG 62.970 55.000 11.67 0.00 0.00 4.12
3903 5015 1.007849 CCGCTTTTGGGGTGAAACG 60.008 57.895 0.00 0.00 46.26 3.60
3904 5016 1.007849 CGCTTTTGGGGTGAAACGG 60.008 57.895 0.00 0.00 38.12 4.44
3905 5017 1.448922 CGCTTTTGGGGTGAAACGGA 61.449 55.000 0.00 0.00 38.12 4.69
3906 5018 0.031585 GCTTTTGGGGTGAAACGGAC 59.968 55.000 0.00 0.00 38.12 4.79
3907 5019 1.394618 CTTTTGGGGTGAAACGGACA 58.605 50.000 0.00 0.00 38.12 4.02
3908 5020 1.336755 CTTTTGGGGTGAAACGGACAG 59.663 52.381 0.00 0.00 38.12 3.51
3909 5021 1.104577 TTTGGGGTGAAACGGACAGC 61.105 55.000 0.00 0.00 38.12 4.40
3910 5022 3.047877 GGGGTGAAACGGACAGCG 61.048 66.667 0.00 0.00 38.12 5.18
3911 5023 3.723348 GGGTGAAACGGACAGCGC 61.723 66.667 0.00 0.00 38.12 5.92
3912 5024 4.072088 GGTGAAACGGACAGCGCG 62.072 66.667 0.00 0.00 38.12 6.86
3913 5025 3.335534 GTGAAACGGACAGCGCGT 61.336 61.111 8.43 2.53 0.00 6.01
3914 5026 2.017783 GTGAAACGGACAGCGCGTA 61.018 57.895 8.43 0.00 0.00 4.42
3915 5027 2.017783 TGAAACGGACAGCGCGTAC 61.018 57.895 8.43 2.77 0.00 3.67
3916 5028 2.017783 GAAACGGACAGCGCGTACA 61.018 57.895 8.43 0.00 0.00 2.90
3917 5029 2.206825 GAAACGGACAGCGCGTACAC 62.207 60.000 8.43 0.00 0.00 2.90
3948 5060 4.785453 GCGCTTGTCCTCCCCTGG 62.785 72.222 0.00 0.00 0.00 4.45
3949 5061 4.785453 CGCTTGTCCTCCCCTGGC 62.785 72.222 0.00 0.00 0.00 4.85
3950 5062 4.432741 GCTTGTCCTCCCCTGGCC 62.433 72.222 0.00 0.00 0.00 5.36
3951 5063 3.732849 CTTGTCCTCCCCTGGCCC 61.733 72.222 0.00 0.00 0.00 5.80
3968 5080 4.953868 CGTCCGTCGGTGGCACAA 62.954 66.667 20.82 3.66 44.16 3.33
3969 5081 2.589442 GTCCGTCGGTGGCACAAA 60.589 61.111 20.82 3.25 44.16 2.83
3970 5082 2.280524 TCCGTCGGTGGCACAAAG 60.281 61.111 20.82 10.18 44.16 2.77
3971 5083 4.025401 CCGTCGGTGGCACAAAGC 62.025 66.667 20.82 5.37 44.16 3.51
3983 5095 1.512771 GCACAAAGCAAAACTCGTTCG 59.487 47.619 0.00 0.00 44.79 3.95
3984 5096 1.512771 CACAAAGCAAAACTCGTTCGC 59.487 47.619 0.00 0.00 0.00 4.70
3985 5097 0.764226 CAAAGCAAAACTCGTTCGCG 59.236 50.000 0.00 0.00 42.98 5.87
3986 5098 0.928451 AAAGCAAAACTCGTTCGCGC 60.928 50.000 0.00 0.00 41.05 6.86
3987 5099 2.711185 AAGCAAAACTCGTTCGCGCC 62.711 55.000 0.00 0.00 41.05 6.53
3988 5100 2.127383 CAAAACTCGTTCGCGCCC 60.127 61.111 0.00 0.00 41.05 6.13
3989 5101 3.351416 AAAACTCGTTCGCGCCCC 61.351 61.111 0.00 0.00 41.05 5.80
3990 5102 4.612412 AAACTCGTTCGCGCCCCA 62.612 61.111 0.00 0.00 41.05 4.96
3991 5103 3.894547 AAACTCGTTCGCGCCCCAT 62.895 57.895 0.00 0.00 41.05 4.00
3992 5104 3.894547 AACTCGTTCGCGCCCCATT 62.895 57.895 0.00 0.00 41.05 3.16
3993 5105 3.124921 CTCGTTCGCGCCCCATTT 61.125 61.111 0.00 0.00 41.05 2.32
3994 5106 3.381169 CTCGTTCGCGCCCCATTTG 62.381 63.158 0.00 0.00 41.05 2.32
3995 5107 4.474846 CGTTCGCGCCCCATTTGG 62.475 66.667 0.00 0.00 0.00 3.28
4002 5114 3.537388 GCCCCATTTGGCGCTATT 58.463 55.556 7.64 0.00 42.54 1.73
4003 5115 1.822615 GCCCCATTTGGCGCTATTT 59.177 52.632 7.64 0.00 42.54 1.40
4004 5116 0.249447 GCCCCATTTGGCGCTATTTC 60.249 55.000 7.64 0.00 42.54 2.17
4005 5117 0.389025 CCCCATTTGGCGCTATTTCC 59.611 55.000 7.64 0.00 0.00 3.13
4006 5118 0.389025 CCCATTTGGCGCTATTTCCC 59.611 55.000 7.64 0.00 0.00 3.97
4007 5119 0.389025 CCATTTGGCGCTATTTCCCC 59.611 55.000 7.64 0.00 0.00 4.81
4008 5120 0.389025 CATTTGGCGCTATTTCCCCC 59.611 55.000 7.64 0.00 0.00 5.40
4022 5134 2.362375 CCCCCAAACCATCCCACG 60.362 66.667 0.00 0.00 0.00 4.94
4023 5135 3.068064 CCCCAAACCATCCCACGC 61.068 66.667 0.00 0.00 0.00 5.34
4024 5136 3.068064 CCCAAACCATCCCACGCC 61.068 66.667 0.00 0.00 0.00 5.68
4025 5137 3.068064 CCAAACCATCCCACGCCC 61.068 66.667 0.00 0.00 0.00 6.13
4026 5138 3.068064 CAAACCATCCCACGCCCC 61.068 66.667 0.00 0.00 0.00 5.80
4027 5139 4.376170 AAACCATCCCACGCCCCC 62.376 66.667 0.00 0.00 0.00 5.40
4058 5170 3.391382 CACCCACCCTCCCTCGTC 61.391 72.222 0.00 0.00 0.00 4.20
4059 5171 4.716977 ACCCACCCTCCCTCGTCC 62.717 72.222 0.00 0.00 0.00 4.79
4060 5172 4.715130 CCCACCCTCCCTCGTCCA 62.715 72.222 0.00 0.00 0.00 4.02
4061 5173 3.391382 CCACCCTCCCTCGTCCAC 61.391 72.222 0.00 0.00 0.00 4.02
4062 5174 3.760035 CACCCTCCCTCGTCCACG 61.760 72.222 0.00 0.00 41.45 4.94
4064 5176 3.450115 CCCTCCCTCGTCCACGAC 61.450 72.222 0.00 0.00 44.22 4.34
4065 5177 3.450115 CCTCCCTCGTCCACGACC 61.450 72.222 0.00 0.00 44.22 4.79
4066 5178 3.812019 CTCCCTCGTCCACGACCG 61.812 72.222 0.00 0.00 44.22 4.79
4067 5179 4.334118 TCCCTCGTCCACGACCGA 62.334 66.667 0.00 0.00 44.22 4.69
4068 5180 4.112341 CCCTCGTCCACGACCGAC 62.112 72.222 0.00 0.00 44.22 4.79
4073 5185 3.434319 GTCCACGACCGACGCCTA 61.434 66.667 0.00 0.00 46.94 3.93
4074 5186 3.434319 TCCACGACCGACGCCTAC 61.434 66.667 0.00 0.00 46.94 3.18
4075 5187 4.487412 CCACGACCGACGCCTACC 62.487 72.222 0.00 0.00 46.94 3.18
4076 5188 4.487412 CACGACCGACGCCTACCC 62.487 72.222 0.00 0.00 46.94 3.69
4079 5191 3.443045 GACCGACGCCTACCCGAA 61.443 66.667 0.00 0.00 0.00 4.30
4080 5192 2.757099 ACCGACGCCTACCCGAAT 60.757 61.111 0.00 0.00 0.00 3.34
4081 5193 2.288788 GACCGACGCCTACCCGAATT 62.289 60.000 0.00 0.00 0.00 2.17
4082 5194 1.590792 CCGACGCCTACCCGAATTC 60.591 63.158 0.00 0.00 0.00 2.17
4083 5195 1.590792 CGACGCCTACCCGAATTCC 60.591 63.158 0.00 0.00 0.00 3.01
4084 5196 1.590792 GACGCCTACCCGAATTCCG 60.591 63.158 0.00 0.00 38.18 4.30
4093 5205 2.890474 CGAATTCCGGCGACCTGG 60.890 66.667 9.30 0.00 33.91 4.45
4094 5206 3.202706 GAATTCCGGCGACCTGGC 61.203 66.667 9.30 0.00 40.44 4.85
4104 5216 4.436998 GACCTGGCCGTCGACCTG 62.437 72.222 10.58 2.39 0.00 4.00
4107 5219 4.457496 CTGGCCGTCGACCTGCAT 62.457 66.667 21.85 0.00 0.00 3.96
4108 5220 4.758251 TGGCCGTCGACCTGCATG 62.758 66.667 21.85 3.36 0.00 4.06
4109 5221 4.451150 GGCCGTCGACCTGCATGA 62.451 66.667 21.85 0.00 0.00 3.07
4110 5222 2.434185 GCCGTCGACCTGCATGAA 60.434 61.111 17.21 0.00 0.00 2.57
4111 5223 2.032634 GCCGTCGACCTGCATGAAA 61.033 57.895 17.21 0.00 0.00 2.69
4112 5224 1.787847 CCGTCGACCTGCATGAAAC 59.212 57.895 10.58 0.00 0.00 2.78
4113 5225 1.416049 CGTCGACCTGCATGAAACG 59.584 57.895 10.58 0.00 0.00 3.60
4114 5226 1.787847 GTCGACCTGCATGAAACGG 59.212 57.895 3.51 0.00 0.00 4.44
4115 5227 0.949105 GTCGACCTGCATGAAACGGT 60.949 55.000 3.51 0.00 0.00 4.83
4116 5228 0.948623 TCGACCTGCATGAAACGGTG 60.949 55.000 0.00 0.00 0.00 4.94
4117 5229 0.948623 CGACCTGCATGAAACGGTGA 60.949 55.000 0.00 0.00 0.00 4.02
4118 5230 1.234821 GACCTGCATGAAACGGTGAA 58.765 50.000 0.00 0.00 0.00 3.18
4119 5231 1.197721 GACCTGCATGAAACGGTGAAG 59.802 52.381 0.00 0.00 0.00 3.02
4120 5232 1.202758 ACCTGCATGAAACGGTGAAGA 60.203 47.619 0.00 0.00 0.00 2.87
4121 5233 1.879380 CCTGCATGAAACGGTGAAGAA 59.121 47.619 0.00 0.00 0.00 2.52
4122 5234 2.095567 CCTGCATGAAACGGTGAAGAAG 60.096 50.000 0.00 0.00 0.00 2.85
4123 5235 2.807967 CTGCATGAAACGGTGAAGAAGA 59.192 45.455 0.00 0.00 0.00 2.87
4124 5236 3.210227 TGCATGAAACGGTGAAGAAGAA 58.790 40.909 0.00 0.00 0.00 2.52
4125 5237 3.250762 TGCATGAAACGGTGAAGAAGAAG 59.749 43.478 0.00 0.00 0.00 2.85
4126 5238 3.498397 GCATGAAACGGTGAAGAAGAAGA 59.502 43.478 0.00 0.00 0.00 2.87
4127 5239 4.024048 GCATGAAACGGTGAAGAAGAAGAA 60.024 41.667 0.00 0.00 0.00 2.52
4128 5240 5.683859 CATGAAACGGTGAAGAAGAAGAAG 58.316 41.667 0.00 0.00 0.00 2.85
4129 5241 5.018539 TGAAACGGTGAAGAAGAAGAAGA 57.981 39.130 0.00 0.00 0.00 2.87
4130 5242 5.424757 TGAAACGGTGAAGAAGAAGAAGAA 58.575 37.500 0.00 0.00 0.00 2.52
4131 5243 5.523916 TGAAACGGTGAAGAAGAAGAAGAAG 59.476 40.000 0.00 0.00 0.00 2.85
4132 5244 4.939052 ACGGTGAAGAAGAAGAAGAAGA 57.061 40.909 0.00 0.00 0.00 2.87
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
301 314 0.587737 GTCGTCTGCGTCGATCTCAG 60.588 60.000 0.00 0.00 39.45 3.35
675 688 1.780309 TCACACCACTTCCTCCCAAAT 59.220 47.619 0.00 0.00 0.00 2.32
697 712 1.272490 TGATCTGCGTTCGTCTTCCTT 59.728 47.619 0.00 0.00 0.00 3.36
708 723 2.804167 CGCTCCTCTGATCTGCGT 59.196 61.111 9.16 0.00 41.45 5.24
753 772 2.028925 CGCAGGGCCAAACCAAAC 59.971 61.111 6.18 0.00 42.05 2.93
779 798 4.401202 AGAAAGAAAGAAAAGGGACGCAAA 59.599 37.500 0.00 0.00 0.00 3.68
780 799 3.951680 AGAAAGAAAGAAAAGGGACGCAA 59.048 39.130 0.00 0.00 0.00 4.85
781 800 3.315191 CAGAAAGAAAGAAAAGGGACGCA 59.685 43.478 0.00 0.00 0.00 5.24
783 802 5.500645 AACAGAAAGAAAGAAAAGGGACG 57.499 39.130 0.00 0.00 0.00 4.79
784 803 6.042777 CCAAACAGAAAGAAAGAAAAGGGAC 58.957 40.000 0.00 0.00 0.00 4.46
785 804 5.128663 CCCAAACAGAAAGAAAGAAAAGGGA 59.871 40.000 0.00 0.00 31.77 4.20
786 805 5.359756 CCCAAACAGAAAGAAAGAAAAGGG 58.640 41.667 0.00 0.00 0.00 3.95
837 859 0.540133 TGCTGTGGACCCGTACAGTA 60.540 55.000 11.08 5.03 44.66 2.74
860 882 4.892433 TCGTTAATTTCGGGTAGGAAACA 58.108 39.130 3.61 0.00 38.61 2.83
916 938 1.821966 TTGGGTAGCCTCCCCTCAGA 61.822 60.000 13.11 0.00 46.48 3.27
917 939 1.306997 TTGGGTAGCCTCCCCTCAG 60.307 63.158 13.11 0.00 46.48 3.35
918 940 1.615424 GTTGGGTAGCCTCCCCTCA 60.615 63.158 13.11 0.00 46.48 3.86
919 941 1.307084 AGTTGGGTAGCCTCCCCTC 60.307 63.158 13.11 4.79 46.48 4.30
920 942 1.307084 GAGTTGGGTAGCCTCCCCT 60.307 63.158 13.11 2.37 46.48 4.79
921 943 2.376165 GGAGTTGGGTAGCCTCCCC 61.376 68.421 13.11 4.65 46.48 4.81
922 944 1.205460 TTGGAGTTGGGTAGCCTCCC 61.205 60.000 13.11 8.31 43.42 4.30
923 945 0.696501 TTTGGAGTTGGGTAGCCTCC 59.303 55.000 13.11 11.43 44.16 4.30
959 981 2.957402 TCCAGCTGTTTGGAGTTGAT 57.043 45.000 13.81 0.00 42.24 2.57
970 999 3.073735 CCTCGCCTCTCCAGCTGT 61.074 66.667 13.81 0.00 0.00 4.40
1031 1060 2.365293 ACAAAGTGAAGACAATTGGGCC 59.635 45.455 10.83 0.00 34.54 5.80
1069 1098 3.169099 CACGATGGGGAGGAGATAGATT 58.831 50.000 0.00 0.00 0.00 2.40
1098 1132 1.203313 CCGCTTTGGTTCGACGAAC 59.797 57.895 28.38 28.38 41.32 3.95
1110 1144 0.036671 CTTCCCTTCCGTACCGCTTT 60.037 55.000 0.00 0.00 0.00 3.51
1226 1260 0.106967 GGCAGAGAATGGAAGGTCCC 60.107 60.000 0.00 0.00 35.03 4.46
1230 1264 0.182299 GGGAGGCAGAGAATGGAAGG 59.818 60.000 0.00 0.00 0.00 3.46
1245 1279 7.653311 CAGAAGAAACCAATAAAAACAAGGGAG 59.347 37.037 0.00 0.00 0.00 4.30
1269 1303 0.747283 GATCACAAGCAGGGAGGCAG 60.747 60.000 0.00 0.00 35.83 4.85
1275 1309 0.036010 AACGAGGATCACAAGCAGGG 60.036 55.000 0.00 0.00 33.17 4.45
1331 1396 2.920384 GGGGATCGGGGAGAGAGC 60.920 72.222 0.00 0.00 0.00 4.09
1332 1397 0.902516 GATGGGGATCGGGGAGAGAG 60.903 65.000 0.00 0.00 0.00 3.20
1333 1398 1.156330 GATGGGGATCGGGGAGAGA 59.844 63.158 0.00 0.00 0.00 3.10
1334 1399 0.902516 GAGATGGGGATCGGGGAGAG 60.903 65.000 0.00 0.00 0.00 3.20
1335 1400 1.156330 GAGATGGGGATCGGGGAGA 59.844 63.158 0.00 0.00 0.00 3.71
1336 1401 2.279069 CGAGATGGGGATCGGGGAG 61.279 68.421 0.00 0.00 0.00 4.30
1337 1402 2.203640 CGAGATGGGGATCGGGGA 60.204 66.667 0.00 0.00 0.00 4.81
1338 1403 4.008933 GCGAGATGGGGATCGGGG 62.009 72.222 0.00 0.00 0.00 5.73
1339 1404 4.363990 CGCGAGATGGGGATCGGG 62.364 72.222 0.00 0.00 0.00 5.14
1342 1407 0.318441 TGATTCGCGAGATGGGGATC 59.682 55.000 9.59 8.36 44.04 3.36
1352 1417 0.895530 AGGAGAAGGTTGATTCGCGA 59.104 50.000 3.71 3.71 34.27 5.87
1426 1899 3.490793 ATCGGCGCCGTCTGATGAG 62.491 63.158 44.16 17.22 40.74 2.90
1452 1925 4.431131 CGGGGGCAAGTGGATGCT 62.431 66.667 0.00 0.00 45.68 3.79
1505 1978 0.348370 AGGGGGAGAGGGAATCATGT 59.652 55.000 0.00 0.00 0.00 3.21
1573 2049 0.176910 CCACACAAAAACCCACCCAC 59.823 55.000 0.00 0.00 0.00 4.61
1574 2050 0.041238 TCCACACAAAAACCCACCCA 59.959 50.000 0.00 0.00 0.00 4.51
1575 2051 1.343142 GATCCACACAAAAACCCACCC 59.657 52.381 0.00 0.00 0.00 4.61
1576 2052 1.000717 CGATCCACACAAAAACCCACC 60.001 52.381 0.00 0.00 0.00 4.61
1733 2210 6.150396 ACTACCTCAATCTAGAATTCGGTG 57.850 41.667 14.04 8.70 0.00 4.94
1744 2221 6.665680 ACTCAACATCTGTACTACCTCAATCT 59.334 38.462 0.00 0.00 0.00 2.40
1770 2247 4.505808 TCTCAATTCGTTACCGGCATTAA 58.494 39.130 0.00 0.00 33.95 1.40
1796 2273 4.759516 AAGTACGCGGATTTGTGAATTT 57.240 36.364 12.47 0.00 0.00 1.82
1797 2274 4.933400 ACTAAGTACGCGGATTTGTGAATT 59.067 37.500 12.47 0.00 0.00 2.17
1798 2275 4.328983 CACTAAGTACGCGGATTTGTGAAT 59.671 41.667 20.91 0.00 33.40 2.57
1802 2279 3.581024 TCACTAAGTACGCGGATTTGT 57.419 42.857 12.47 6.27 0.00 2.83
1815 2292 8.019669 CCAACAAGAAATGAGTCATTCACTAAG 58.980 37.037 18.52 16.51 38.99 2.18
1829 2306 5.124457 CCATCCACTAGACCAACAAGAAATG 59.876 44.000 0.00 0.00 0.00 2.32
1872 2349 5.273944 GCAGGTTCACAAGTAAGACAAAAG 58.726 41.667 0.00 0.00 0.00 2.27
1946 2427 7.990886 GTGAATGGTGGATAGTCTTAAATACCA 59.009 37.037 0.00 0.00 40.78 3.25
1960 2441 4.018506 TGTTGTCTATGGTGAATGGTGGAT 60.019 41.667 0.00 0.00 0.00 3.41
2041 2522 3.808466 CTGTCCAGATAAGCTACAGCA 57.192 47.619 3.70 0.00 45.16 4.41
2065 2546 3.370103 CCGAAACTAAGGGTGCCATAAGA 60.370 47.826 0.00 0.00 0.00 2.10
2088 2569 7.433979 GCATTTTAACGAATTTCCAGTAAACG 58.566 34.615 0.00 0.00 0.00 3.60
2328 2809 2.099921 GAGAGCAAATGGAGCGTCTCTA 59.900 50.000 6.78 1.82 35.41 2.43
2470 2976 5.581605 ACAAAAGTACACAACAAGATGCAG 58.418 37.500 0.00 0.00 0.00 4.41
3033 3952 1.714794 GGTGTGAGATGGAGAACGTG 58.285 55.000 0.00 0.00 0.00 4.49
3111 4030 0.396435 AGACCTCAAACATGACGCCA 59.604 50.000 0.00 0.00 0.00 5.69
3149 4068 1.742750 GCAATGTTACCCCTCCTCGTC 60.743 57.143 0.00 0.00 0.00 4.20
3154 4073 1.004277 TCACAGCAATGTTACCCCTCC 59.996 52.381 0.00 0.00 0.00 4.30
3189 4109 6.767662 CTGCACCTACAGTTGCATTATGCG 62.768 50.000 12.78 0.50 38.38 4.73
3256 4178 6.316390 CACTGATGTTTAGGATAGTTTCCCAC 59.684 42.308 0.00 0.00 46.81 4.61
3257 4179 6.012858 ACACTGATGTTTAGGATAGTTTCCCA 60.013 38.462 0.00 0.00 40.00 4.37
3315 4247 0.721718 GTTCGGATTTGCAGACCTCG 59.278 55.000 0.00 0.00 0.00 4.63
3428 4361 0.953727 TGTGCAGCAGGAAACATGAC 59.046 50.000 0.00 0.00 0.00 3.06
3573 4620 4.657824 ACGGAGCAACCACGACGG 62.658 66.667 0.00 0.00 42.50 4.79
3585 4632 1.060713 CAGCTACGAACACAACGGAG 58.939 55.000 0.00 0.00 43.56 4.63
3595 4642 2.029288 GCAGCACAGCAGCTACGAA 61.029 57.895 0.00 0.00 44.54 3.85
3662 4709 3.575351 GAGCGGCCAGACAAGACGT 62.575 63.158 2.24 0.00 0.00 4.34
3755 4867 3.916392 GATAGGATGGGGTCGCGCG 62.916 68.421 26.76 26.76 0.00 6.86
3756 4868 2.048127 GATAGGATGGGGTCGCGC 60.048 66.667 0.00 0.00 0.00 6.86
3757 4869 2.657237 GGATAGGATGGGGTCGCG 59.343 66.667 0.00 0.00 0.00 5.87
3758 4870 2.657237 CGGATAGGATGGGGTCGC 59.343 66.667 0.00 0.00 0.00 5.19
3759 4871 1.228769 TCCGGATAGGATGGGGTCG 60.229 63.158 0.00 0.00 45.98 4.79
3760 4872 4.968553 TCCGGATAGGATGGGGTC 57.031 61.111 0.00 0.00 45.98 4.46
3775 4887 2.107141 CCTCGAAGGGACGCATCC 59.893 66.667 0.00 0.00 45.42 3.51
3776 4888 2.586357 GCCTCGAAGGGACGCATC 60.586 66.667 0.00 0.00 35.37 3.91
3777 4889 2.463589 TTTGCCTCGAAGGGACGCAT 62.464 55.000 0.00 0.00 34.53 4.73
3778 4890 2.668185 TTTTGCCTCGAAGGGACGCA 62.668 55.000 0.00 0.00 34.53 5.24
3779 4891 1.964373 TTTTGCCTCGAAGGGACGC 60.964 57.895 0.00 0.00 34.53 5.19
3780 4892 1.866925 GTTTTGCCTCGAAGGGACG 59.133 57.895 0.00 0.00 34.53 4.79
3781 4893 1.574702 CCGTTTTGCCTCGAAGGGAC 61.575 60.000 0.00 0.00 34.53 4.46
3782 4894 1.302192 CCGTTTTGCCTCGAAGGGA 60.302 57.895 0.00 0.00 35.37 4.20
3783 4895 1.302192 TCCGTTTTGCCTCGAAGGG 60.302 57.895 3.56 0.00 35.37 3.95
3784 4896 0.882927 TGTCCGTTTTGCCTCGAAGG 60.883 55.000 0.00 0.00 38.80 3.46
3785 4897 0.941542 TTGTCCGTTTTGCCTCGAAG 59.058 50.000 0.00 0.00 0.00 3.79
3786 4898 1.380524 TTTGTCCGTTTTGCCTCGAA 58.619 45.000 0.00 0.00 0.00 3.71
3787 4899 1.064357 GTTTTGTCCGTTTTGCCTCGA 59.936 47.619 0.00 0.00 0.00 4.04
3788 4900 1.202200 TGTTTTGTCCGTTTTGCCTCG 60.202 47.619 0.00 0.00 0.00 4.63
3789 4901 2.098443 TCTGTTTTGTCCGTTTTGCCTC 59.902 45.455 0.00 0.00 0.00 4.70
3790 4902 2.096248 TCTGTTTTGTCCGTTTTGCCT 58.904 42.857 0.00 0.00 0.00 4.75
3791 4903 2.190161 GTCTGTTTTGTCCGTTTTGCC 58.810 47.619 0.00 0.00 0.00 4.52
3792 4904 1.843753 CGTCTGTTTTGTCCGTTTTGC 59.156 47.619 0.00 0.00 0.00 3.68
3793 4905 2.446282 CCGTCTGTTTTGTCCGTTTTG 58.554 47.619 0.00 0.00 0.00 2.44
3794 4906 1.202211 GCCGTCTGTTTTGTCCGTTTT 60.202 47.619 0.00 0.00 0.00 2.43
3795 4907 0.379316 GCCGTCTGTTTTGTCCGTTT 59.621 50.000 0.00 0.00 0.00 3.60
3796 4908 1.441732 GGCCGTCTGTTTTGTCCGTT 61.442 55.000 0.00 0.00 0.00 4.44
3797 4909 1.890510 GGCCGTCTGTTTTGTCCGT 60.891 57.895 0.00 0.00 0.00 4.69
3798 4910 1.841663 CTGGCCGTCTGTTTTGTCCG 61.842 60.000 0.00 0.00 0.00 4.79
3799 4911 1.949257 CTGGCCGTCTGTTTTGTCC 59.051 57.895 0.00 0.00 0.00 4.02
3800 4912 1.282875 GCTGGCCGTCTGTTTTGTC 59.717 57.895 0.00 0.00 0.00 3.18
3801 4913 2.542907 CGCTGGCCGTCTGTTTTGT 61.543 57.895 0.00 0.00 0.00 2.83
3802 4914 2.252260 CGCTGGCCGTCTGTTTTG 59.748 61.111 0.00 0.00 0.00 2.44
3803 4915 3.660111 GCGCTGGCCGTCTGTTTT 61.660 61.111 0.00 0.00 39.71 2.43
3819 4931 2.331019 AAATCCATTTACGCCCGCGC 62.331 55.000 9.37 0.00 44.19 6.86
3820 4932 0.099791 AAAATCCATTTACGCCCGCG 59.900 50.000 7.69 7.69 46.03 6.46
3821 4933 1.923864 CAAAAATCCATTTACGCCCGC 59.076 47.619 0.00 0.00 0.00 6.13
3822 4934 3.224884 ACAAAAATCCATTTACGCCCG 57.775 42.857 0.00 0.00 0.00 6.13
3823 4935 3.610677 CGAACAAAAATCCATTTACGCCC 59.389 43.478 0.00 0.00 0.00 6.13
3824 4936 4.231439 ACGAACAAAAATCCATTTACGCC 58.769 39.130 0.00 0.00 0.00 5.68
3825 4937 5.815964 AACGAACAAAAATCCATTTACGC 57.184 34.783 0.00 0.00 0.00 4.42
3826 4938 8.111224 ACAAAAACGAACAAAAATCCATTTACG 58.889 29.630 0.00 0.00 0.00 3.18
3827 4939 9.416058 GACAAAAACGAACAAAAATCCATTTAC 57.584 29.630 0.00 0.00 0.00 2.01
3828 4940 8.604890 GGACAAAAACGAACAAAAATCCATTTA 58.395 29.630 0.00 0.00 0.00 1.40
3829 4941 7.468441 GGACAAAAACGAACAAAAATCCATTT 58.532 30.769 0.00 0.00 0.00 2.32
3830 4942 6.237969 CGGACAAAAACGAACAAAAATCCATT 60.238 34.615 0.00 0.00 0.00 3.16
3831 4943 5.233263 CGGACAAAAACGAACAAAAATCCAT 59.767 36.000 0.00 0.00 0.00 3.41
3832 4944 4.563184 CGGACAAAAACGAACAAAAATCCA 59.437 37.500 0.00 0.00 0.00 3.41
3833 4945 4.549298 GCGGACAAAAACGAACAAAAATCC 60.549 41.667 0.00 0.00 0.00 3.01
3834 4946 4.266739 AGCGGACAAAAACGAACAAAAATC 59.733 37.500 0.00 0.00 0.00 2.17
3835 4947 4.177783 AGCGGACAAAAACGAACAAAAAT 58.822 34.783 0.00 0.00 0.00 1.82
3836 4948 3.576648 AGCGGACAAAAACGAACAAAAA 58.423 36.364 0.00 0.00 0.00 1.94
3837 4949 3.219052 AGCGGACAAAAACGAACAAAA 57.781 38.095 0.00 0.00 0.00 2.44
3838 4950 2.923605 AGCGGACAAAAACGAACAAA 57.076 40.000 0.00 0.00 0.00 2.83
3839 4951 2.923605 AAGCGGACAAAAACGAACAA 57.076 40.000 0.00 0.00 0.00 2.83
3840 4952 2.917971 CAAAAGCGGACAAAAACGAACA 59.082 40.909 0.00 0.00 0.00 3.18
3841 4953 3.001464 GTCAAAAGCGGACAAAAACGAAC 60.001 43.478 0.00 0.00 35.36 3.95
3842 4954 3.172824 GTCAAAAGCGGACAAAAACGAA 58.827 40.909 0.00 0.00 35.36 3.85
3843 4955 2.478200 GGTCAAAAGCGGACAAAAACGA 60.478 45.455 0.00 0.00 37.00 3.85
3844 4956 1.849829 GGTCAAAAGCGGACAAAAACG 59.150 47.619 0.00 0.00 37.00 3.60
3845 4957 2.198406 GGGTCAAAAGCGGACAAAAAC 58.802 47.619 0.00 0.00 37.00 2.43
3846 4958 1.825474 TGGGTCAAAAGCGGACAAAAA 59.175 42.857 0.00 0.00 37.00 1.94
3847 4959 1.475403 TGGGTCAAAAGCGGACAAAA 58.525 45.000 0.00 0.00 37.00 2.44
3848 4960 1.611491 GATGGGTCAAAAGCGGACAAA 59.389 47.619 0.00 0.00 37.00 2.83
3849 4961 1.243902 GATGGGTCAAAAGCGGACAA 58.756 50.000 0.00 0.00 37.00 3.18
3850 4962 0.109532 TGATGGGTCAAAAGCGGACA 59.890 50.000 0.00 0.00 37.00 4.02
3851 4963 0.521735 GTGATGGGTCAAAAGCGGAC 59.478 55.000 0.00 0.00 35.80 4.79
3852 4964 0.953471 CGTGATGGGTCAAAAGCGGA 60.953 55.000 0.00 0.00 35.80 5.54
3853 4965 1.501741 CGTGATGGGTCAAAAGCGG 59.498 57.895 0.00 0.00 35.80 5.52
3854 4966 1.501741 CCGTGATGGGTCAAAAGCG 59.498 57.895 0.00 0.00 35.80 4.68
3855 4967 1.212751 GCCGTGATGGGTCAAAAGC 59.787 57.895 0.00 0.00 38.63 3.51
3856 4968 1.595093 GGGCCGTGATGGGTCAAAAG 61.595 60.000 0.00 0.00 38.63 2.27
3857 4969 1.605165 GGGCCGTGATGGGTCAAAA 60.605 57.895 0.00 0.00 38.63 2.44
3858 4970 2.034999 GGGCCGTGATGGGTCAAA 59.965 61.111 0.00 0.00 38.63 2.69
3859 4971 2.762969 CTTGGGCCGTGATGGGTCAA 62.763 60.000 0.00 0.00 38.63 3.18
3860 4972 3.253061 TTGGGCCGTGATGGGTCA 61.253 61.111 0.00 0.00 38.63 4.02
3861 4973 2.438434 CTTGGGCCGTGATGGGTC 60.438 66.667 0.00 0.00 38.63 4.46
3862 4974 2.366153 AAACTTGGGCCGTGATGGGT 62.366 55.000 0.00 0.00 38.63 4.51
3863 4975 1.606313 AAACTTGGGCCGTGATGGG 60.606 57.895 0.00 0.00 38.63 4.00
3864 4976 1.586028 CAAACTTGGGCCGTGATGG 59.414 57.895 0.00 0.00 42.50 3.51
3865 4977 1.080569 GCAAACTTGGGCCGTGATG 60.081 57.895 0.00 0.00 0.00 3.07
3866 4978 2.625823 CGCAAACTTGGGCCGTGAT 61.626 57.895 0.00 0.00 34.31 3.06
3867 4979 3.283684 CGCAAACTTGGGCCGTGA 61.284 61.111 0.00 0.00 34.31 4.35
3873 4985 2.969677 AAAAGCGGCGCAAACTTGGG 62.970 55.000 35.02 2.32 43.22 4.12
3874 4986 1.591327 AAAAGCGGCGCAAACTTGG 60.591 52.632 35.02 0.00 0.00 3.61
3875 4987 1.559336 CAAAAGCGGCGCAAACTTG 59.441 52.632 35.02 24.17 0.00 3.16
3876 4988 1.591327 CCAAAAGCGGCGCAAACTT 60.591 52.632 35.02 16.88 0.00 2.66
3877 4989 2.027460 CCAAAAGCGGCGCAAACT 59.973 55.556 35.02 10.65 0.00 2.66
3878 4990 3.035503 CCCAAAAGCGGCGCAAAC 61.036 61.111 35.02 4.02 0.00 2.93
3879 4991 4.292178 CCCCAAAAGCGGCGCAAA 62.292 61.111 35.02 0.00 0.00 3.68
3883 4995 2.851071 TTTCACCCCAAAAGCGGCG 61.851 57.895 0.51 0.51 0.00 6.46
3884 4996 1.300620 GTTTCACCCCAAAAGCGGC 60.301 57.895 0.00 0.00 0.00 6.53
3885 4997 1.007849 CGTTTCACCCCAAAAGCGG 60.008 57.895 0.00 0.00 0.00 5.52
3886 4998 1.007849 CCGTTTCACCCCAAAAGCG 60.008 57.895 0.00 0.00 0.00 4.68
3887 4999 0.031585 GTCCGTTTCACCCCAAAAGC 59.968 55.000 0.00 0.00 0.00 3.51
3888 5000 1.336755 CTGTCCGTTTCACCCCAAAAG 59.663 52.381 0.00 0.00 0.00 2.27
3889 5001 1.394618 CTGTCCGTTTCACCCCAAAA 58.605 50.000 0.00 0.00 0.00 2.44
3890 5002 1.104577 GCTGTCCGTTTCACCCCAAA 61.105 55.000 0.00 0.00 0.00 3.28
3891 5003 1.527380 GCTGTCCGTTTCACCCCAA 60.527 57.895 0.00 0.00 0.00 4.12
3892 5004 2.112297 GCTGTCCGTTTCACCCCA 59.888 61.111 0.00 0.00 0.00 4.96
3893 5005 3.047877 CGCTGTCCGTTTCACCCC 61.048 66.667 0.00 0.00 0.00 4.95
3894 5006 3.723348 GCGCTGTCCGTTTCACCC 61.723 66.667 0.00 0.00 39.71 4.61
3895 5007 4.072088 CGCGCTGTCCGTTTCACC 62.072 66.667 5.56 0.00 39.71 4.02
3896 5008 2.017783 TACGCGCTGTCCGTTTCAC 61.018 57.895 5.73 0.00 39.88 3.18
3897 5009 2.017783 GTACGCGCTGTCCGTTTCA 61.018 57.895 5.73 0.00 39.88 2.69
3898 5010 2.017783 TGTACGCGCTGTCCGTTTC 61.018 57.895 5.73 0.00 39.88 2.78
3899 5011 2.027897 TGTACGCGCTGTCCGTTT 59.972 55.556 5.73 0.00 39.88 3.60
3900 5012 2.732094 GTGTACGCGCTGTCCGTT 60.732 61.111 5.73 0.00 39.88 4.44
3931 5043 4.785453 CCAGGGGAGGACAAGCGC 62.785 72.222 0.00 0.00 0.00 5.92
3932 5044 4.785453 GCCAGGGGAGGACAAGCG 62.785 72.222 0.00 0.00 0.00 4.68
3933 5045 4.432741 GGCCAGGGGAGGACAAGC 62.433 72.222 0.00 0.00 36.38 4.01
3934 5046 3.732849 GGGCCAGGGGAGGACAAG 61.733 72.222 4.39 0.00 38.98 3.16
3951 5063 4.953868 TTGTGCCACCGACGGACG 62.954 66.667 23.38 11.05 42.18 4.79
3952 5064 2.589442 TTTGTGCCACCGACGGAC 60.589 61.111 23.38 8.84 0.00 4.79
3953 5065 2.280524 CTTTGTGCCACCGACGGA 60.281 61.111 23.38 0.00 0.00 4.69
3954 5066 4.025401 GCTTTGTGCCACCGACGG 62.025 66.667 13.61 13.61 35.15 4.79
3955 5067 2.329678 TTTGCTTTGTGCCACCGACG 62.330 55.000 0.00 0.00 42.00 5.12
3956 5068 0.179124 TTTTGCTTTGTGCCACCGAC 60.179 50.000 0.00 0.00 42.00 4.79
3957 5069 0.179124 GTTTTGCTTTGTGCCACCGA 60.179 50.000 0.00 0.00 42.00 4.69
3958 5070 0.179113 AGTTTTGCTTTGTGCCACCG 60.179 50.000 0.00 0.00 42.00 4.94
3959 5071 1.570813 GAGTTTTGCTTTGTGCCACC 58.429 50.000 0.00 0.00 42.00 4.61
3960 5072 1.199624 CGAGTTTTGCTTTGTGCCAC 58.800 50.000 0.00 0.00 42.00 5.01
3961 5073 0.814457 ACGAGTTTTGCTTTGTGCCA 59.186 45.000 0.00 0.00 42.00 4.92
3962 5074 1.852280 GAACGAGTTTTGCTTTGTGCC 59.148 47.619 0.00 0.00 42.00 5.01
3963 5075 1.512771 CGAACGAGTTTTGCTTTGTGC 59.487 47.619 0.00 0.00 43.25 4.57
3964 5076 1.512771 GCGAACGAGTTTTGCTTTGTG 59.487 47.619 0.00 0.00 41.04 3.33
3965 5077 1.822581 GCGAACGAGTTTTGCTTTGT 58.177 45.000 0.00 0.00 41.04 2.83
3966 5078 0.764226 CGCGAACGAGTTTTGCTTTG 59.236 50.000 0.00 0.00 41.97 2.77
3967 5079 0.928451 GCGCGAACGAGTTTTGCTTT 60.928 50.000 12.10 0.00 41.97 3.51
3968 5080 1.368850 GCGCGAACGAGTTTTGCTT 60.369 52.632 12.10 0.00 41.97 3.91
3969 5081 2.248431 GCGCGAACGAGTTTTGCT 59.752 55.556 12.10 0.00 41.97 3.91
3970 5082 2.795389 GGCGCGAACGAGTTTTGC 60.795 61.111 12.10 4.69 43.93 3.68
3971 5083 2.127383 GGGCGCGAACGAGTTTTG 60.127 61.111 12.10 0.00 43.93 2.44
3972 5084 3.351416 GGGGCGCGAACGAGTTTT 61.351 61.111 12.10 0.00 43.93 2.43
3973 5085 3.894547 ATGGGGCGCGAACGAGTTT 62.895 57.895 12.10 0.00 43.93 2.66
3974 5086 3.894547 AATGGGGCGCGAACGAGTT 62.895 57.895 12.10 0.00 43.93 3.01
3975 5087 3.894547 AAATGGGGCGCGAACGAGT 62.895 57.895 12.10 0.00 43.93 4.18
3976 5088 3.124921 AAATGGGGCGCGAACGAG 61.125 61.111 12.10 0.00 43.93 4.18
3977 5089 3.427425 CAAATGGGGCGCGAACGA 61.427 61.111 12.10 0.00 43.93 3.85
3978 5090 4.474846 CCAAATGGGGCGCGAACG 62.475 66.667 12.10 0.00 44.07 3.95
3979 5091 4.794439 GCCAAATGGGGCGCGAAC 62.794 66.667 12.10 0.11 45.40 3.95
3987 5099 0.389025 GGGAAATAGCGCCAAATGGG 59.611 55.000 2.29 0.00 40.85 4.00
3988 5100 0.389025 GGGGAAATAGCGCCAAATGG 59.611 55.000 2.29 0.00 40.36 3.16
3989 5101 0.389025 GGGGGAAATAGCGCCAAATG 59.611 55.000 2.29 0.00 42.25 2.32
3990 5102 2.820845 GGGGGAAATAGCGCCAAAT 58.179 52.632 2.29 0.00 42.25 2.32
3991 5103 4.347865 GGGGGAAATAGCGCCAAA 57.652 55.556 2.29 0.00 42.25 3.28
4005 5117 2.362375 CGTGGGATGGTTTGGGGG 60.362 66.667 0.00 0.00 0.00 5.40
4006 5118 3.068064 GCGTGGGATGGTTTGGGG 61.068 66.667 0.00 0.00 0.00 4.96
4007 5119 3.068064 GGCGTGGGATGGTTTGGG 61.068 66.667 0.00 0.00 0.00 4.12
4008 5120 3.068064 GGGCGTGGGATGGTTTGG 61.068 66.667 0.00 0.00 0.00 3.28
4009 5121 3.068064 GGGGCGTGGGATGGTTTG 61.068 66.667 0.00 0.00 0.00 2.93
4010 5122 4.376170 GGGGGCGTGGGATGGTTT 62.376 66.667 0.00 0.00 0.00 3.27
4041 5153 3.391382 GACGAGGGAGGGTGGGTG 61.391 72.222 0.00 0.00 0.00 4.61
4042 5154 4.716977 GGACGAGGGAGGGTGGGT 62.717 72.222 0.00 0.00 0.00 4.51
4043 5155 4.715130 TGGACGAGGGAGGGTGGG 62.715 72.222 0.00 0.00 0.00 4.61
4044 5156 3.391382 GTGGACGAGGGAGGGTGG 61.391 72.222 0.00 0.00 0.00 4.61
4045 5157 3.760035 CGTGGACGAGGGAGGGTG 61.760 72.222 0.00 0.00 43.02 4.61
4046 5158 3.975591 TCGTGGACGAGGGAGGGT 61.976 66.667 0.00 0.00 44.22 4.34
4056 5168 3.434319 TAGGCGTCGGTCGTGGAC 61.434 66.667 0.00 0.00 42.13 4.02
4057 5169 3.434319 GTAGGCGTCGGTCGTGGA 61.434 66.667 0.00 0.00 42.13 4.02
4058 5170 4.487412 GGTAGGCGTCGGTCGTGG 62.487 72.222 0.00 0.00 42.13 4.94
4059 5171 4.487412 GGGTAGGCGTCGGTCGTG 62.487 72.222 0.00 0.00 42.13 4.35
4062 5174 2.288788 AATTCGGGTAGGCGTCGGTC 62.289 60.000 0.00 0.00 0.00 4.79
4063 5175 2.288788 GAATTCGGGTAGGCGTCGGT 62.289 60.000 0.00 0.00 0.00 4.69
4064 5176 1.590792 GAATTCGGGTAGGCGTCGG 60.591 63.158 0.00 0.00 0.00 4.79
4065 5177 1.590792 GGAATTCGGGTAGGCGTCG 60.591 63.158 0.00 0.00 0.00 5.12
4066 5178 1.590792 CGGAATTCGGGTAGGCGTC 60.591 63.158 5.14 0.00 34.75 5.19
4067 5179 2.497770 CGGAATTCGGGTAGGCGT 59.502 61.111 5.14 0.00 34.75 5.68
4076 5188 2.890474 CCAGGTCGCCGGAATTCG 60.890 66.667 5.05 0.00 38.88 3.34
4077 5189 3.202706 GCCAGGTCGCCGGAATTC 61.203 66.667 5.05 0.00 0.00 2.17
4078 5190 4.796495 GGCCAGGTCGCCGGAATT 62.796 66.667 5.05 0.00 39.64 2.17
4087 5199 4.436998 CAGGTCGACGGCCAGGTC 62.437 72.222 22.54 1.44 0.00 3.85
4090 5202 4.457496 ATGCAGGTCGACGGCCAG 62.457 66.667 22.54 14.65 39.74 4.85
4091 5203 4.758251 CATGCAGGTCGACGGCCA 62.758 66.667 22.54 13.85 39.74 5.36
4092 5204 3.950794 TTCATGCAGGTCGACGGCC 62.951 63.158 22.86 11.44 39.74 6.13
4093 5205 2.032634 TTTCATGCAGGTCGACGGC 61.033 57.895 20.14 20.14 40.96 5.68
4094 5206 1.787847 GTTTCATGCAGGTCGACGG 59.212 57.895 9.92 5.44 0.00 4.79
4095 5207 1.416049 CGTTTCATGCAGGTCGACG 59.584 57.895 9.92 3.99 0.00 5.12
4096 5208 0.949105 ACCGTTTCATGCAGGTCGAC 60.949 55.000 7.13 7.13 29.76 4.20
4097 5209 0.948623 CACCGTTTCATGCAGGTCGA 60.949 55.000 12.63 0.00 34.25 4.20
4098 5210 0.948623 TCACCGTTTCATGCAGGTCG 60.949 55.000 0.00 2.48 34.25 4.79
4099 5211 1.197721 CTTCACCGTTTCATGCAGGTC 59.802 52.381 0.00 0.00 34.25 3.85
4100 5212 1.202758 TCTTCACCGTTTCATGCAGGT 60.203 47.619 0.00 0.00 37.49 4.00
4101 5213 1.522668 TCTTCACCGTTTCATGCAGG 58.477 50.000 0.00 0.00 0.00 4.85
4102 5214 2.807967 TCTTCTTCACCGTTTCATGCAG 59.192 45.455 0.00 0.00 0.00 4.41
4103 5215 2.844946 TCTTCTTCACCGTTTCATGCA 58.155 42.857 0.00 0.00 0.00 3.96
4104 5216 3.498397 TCTTCTTCTTCACCGTTTCATGC 59.502 43.478 0.00 0.00 0.00 4.06
4105 5217 5.466728 TCTTCTTCTTCTTCACCGTTTCATG 59.533 40.000 0.00 0.00 0.00 3.07
4106 5218 5.611374 TCTTCTTCTTCTTCACCGTTTCAT 58.389 37.500 0.00 0.00 0.00 2.57
4107 5219 5.018539 TCTTCTTCTTCTTCACCGTTTCA 57.981 39.130 0.00 0.00 0.00 2.69
4108 5220 5.753921 TCTTCTTCTTCTTCTTCACCGTTTC 59.246 40.000 0.00 0.00 0.00 2.78
4109 5221 5.671493 TCTTCTTCTTCTTCTTCACCGTTT 58.329 37.500 0.00 0.00 0.00 3.60
4110 5222 5.277857 TCTTCTTCTTCTTCTTCACCGTT 57.722 39.130 0.00 0.00 0.00 4.44
4111 5223 4.939052 TCTTCTTCTTCTTCTTCACCGT 57.061 40.909 0.00 0.00 0.00 4.83


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.