Multiple sequence alignment - TraesCS2A01G220700

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS2A01G220700 chr2A 100.000 5977 0 0 1 5977 209262916 209256940 0.000000e+00 11038.0
1 TraesCS2A01G220700 chr2B 94.501 3764 175 12 1960 5703 250707446 250703695 0.000000e+00 5775.0
2 TraesCS2A01G220700 chr2B 86.535 1515 119 42 248 1737 250709151 250707697 0.000000e+00 1589.0
3 TraesCS2A01G220700 chr2B 86.842 266 21 10 5688 5949 250703637 250703382 9.800000e-73 285.0
4 TraesCS2A01G220700 chr2B 92.537 134 8 1 1827 1960 250707607 250707476 2.200000e-44 191.0
5 TraesCS2A01G220700 chr2D 93.810 3554 159 24 1826 5328 194734650 194731107 0.000000e+00 5288.0
6 TraesCS2A01G220700 chr2D 85.887 1658 116 67 133 1736 194736333 194734740 0.000000e+00 1657.0
7 TraesCS2A01G220700 chr2D 86.819 569 33 13 5326 5873 194731003 194730456 1.110000e-166 597.0
8 TraesCS2A01G220700 chr2D 87.500 104 7 2 5878 5976 194715342 194715240 1.360000e-21 115.0
9 TraesCS2A01G220700 chr2D 94.545 55 2 1 1774 1827 61804623 61804677 3.840000e-12 84.2
10 TraesCS2A01G220700 chr2D 89.286 56 4 2 1724 1779 194734700 194734647 1.070000e-07 69.4
11 TraesCS2A01G220700 chr7D 87.084 511 38 10 3005 3515 596669934 596669452 2.430000e-153 553.0
12 TraesCS2A01G220700 chr7D 91.518 224 13 5 3280 3503 544555439 544555656 2.710000e-78 303.0
13 TraesCS2A01G220700 chr7D 89.732 224 17 5 3280 3503 598730342 598730559 1.270000e-71 281.0
14 TraesCS2A01G220700 chr7D 88.889 225 20 4 3005 3227 598730110 598730331 7.630000e-69 272.0
15 TraesCS2A01G220700 chr5D 91.031 223 14 5 3284 3506 35485679 35485463 4.530000e-76 296.0
16 TraesCS2A01G220700 chr5D 90.498 221 15 5 3286 3506 539780697 539780483 2.730000e-73 287.0
17 TraesCS2A01G220700 chr5D 88.889 225 20 4 3005 3227 35485915 35485694 7.630000e-69 272.0
18 TraesCS2A01G220700 chr5D 88.444 225 21 4 3005 3227 539780935 539780714 3.550000e-67 267.0
19 TraesCS2A01G220700 chr5D 91.525 59 4 1 1776 1833 527572724 527572666 4.970000e-11 80.5
20 TraesCS2A01G220700 chr5D 91.525 59 4 1 1776 1833 527602287 527602229 4.970000e-11 80.5
21 TraesCS2A01G220700 chr6D 90.625 224 15 5 3283 3506 231082745 231082528 5.860000e-75 292.0
22 TraesCS2A01G220700 chr6D 88.889 225 20 5 3005 3227 231082980 231082759 7.630000e-69 272.0
23 TraesCS2A01G220700 chr6D 92.982 57 3 1 1774 1829 382725641 382725585 1.380000e-11 82.4
24 TraesCS2A01G220700 chr4B 90.826 218 16 3 3349 3564 456354310 456354095 7.580000e-74 289.0
25 TraesCS2A01G220700 chr4B 91.176 68 5 1 1776 1842 515145959 515146026 2.290000e-14 91.6
26 TraesCS2A01G220700 chr5B 88.362 232 20 5 3005 3235 673098957 673099182 7.630000e-69 272.0
27 TraesCS2A01G220700 chr1B 88.000 225 22 4 3005 3227 252371727 252371948 1.650000e-65 261.0
28 TraesCS2A01G220700 chr1B 92.982 57 2 1 1774 1828 661577900 661577956 1.380000e-11 82.4
29 TraesCS2A01G220700 chr6A 100.000 48 0 0 1791 1838 611567714 611567667 8.250000e-14 89.8
30 TraesCS2A01G220700 chr3D 96.226 53 2 0 1776 1828 328393056 328393108 2.970000e-13 87.9
31 TraesCS2A01G220700 chr5A 92.727 55 4 0 1775 1829 619169033 619169087 4.970000e-11 80.5


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS2A01G220700 chr2A 209256940 209262916 5976 True 11038.00 11038 100.00000 1 5977 1 chr2A.!!$R1 5976
1 TraesCS2A01G220700 chr2B 250703382 250709151 5769 True 1960.00 5775 90.10375 248 5949 4 chr2B.!!$R1 5701
2 TraesCS2A01G220700 chr2D 194730456 194736333 5877 True 1902.85 5288 88.95050 133 5873 4 chr2D.!!$R2 5740

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
730 775 0.110823 CGCGTTCCGTTCCTCTTTTG 60.111 55.000 0.00 0.0 0.00 2.44 F
731 776 0.385598 GCGTTCCGTTCCTCTTTTGC 60.386 55.000 0.00 0.0 0.00 3.68 F
1490 1604 0.515564 GCACCAAAGCGTACGTCATT 59.484 50.000 17.90 6.9 0.00 2.57 F
2436 2632 1.136695 CAAAGCAAAACTGCCACCTCA 59.863 47.619 0.00 0.0 34.90 3.86 F
3227 3423 0.988832 TCCGTACCATGGGAAGCTTT 59.011 50.000 18.09 0.0 0.00 3.51 F
4244 4442 0.315251 TGGAGGAGCTCAATATCGCG 59.685 55.000 17.19 0.0 31.08 5.87 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1538 1652 0.318107 CAGTTTTGGTCGCAGCAAGG 60.318 55.000 0.00 0.0 36.89 3.61 R
2656 2852 1.070289 CGGAGAGTAATAACCCCCTGC 59.930 57.143 0.00 0.0 0.00 4.85 R
2748 2944 0.038159 AGAACTGAAGCTCGAACGGG 60.038 55.000 0.00 0.0 0.00 5.28 R
3649 3845 0.539438 AGCCCAAGCGTTTGATCCAA 60.539 50.000 14.10 0.0 46.67 3.53 R
4712 4916 0.179113 CAAGGCCACACACCACAAAC 60.179 55.000 5.01 0.0 0.00 2.93 R
5107 5311 1.032014 TTTCCACAGCCAGAGCAAAC 58.968 50.000 0.00 0.0 43.56 2.93 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
28 29 0.871057 GAGCAACACTCAACCTCTGC 59.129 55.000 0.00 0.00 45.49 4.26
29 30 0.181114 AGCAACACTCAACCTCTGCA 59.819 50.000 0.00 0.00 32.21 4.41
30 31 1.202855 AGCAACACTCAACCTCTGCAT 60.203 47.619 0.00 0.00 32.21 3.96
31 32 2.038952 AGCAACACTCAACCTCTGCATA 59.961 45.455 0.00 0.00 32.21 3.14
32 33 2.813754 GCAACACTCAACCTCTGCATAA 59.186 45.455 0.00 0.00 0.00 1.90
33 34 3.441572 GCAACACTCAACCTCTGCATAAT 59.558 43.478 0.00 0.00 0.00 1.28
34 35 4.082571 GCAACACTCAACCTCTGCATAATT 60.083 41.667 0.00 0.00 0.00 1.40
35 36 5.123820 GCAACACTCAACCTCTGCATAATTA 59.876 40.000 0.00 0.00 0.00 1.40
36 37 6.676456 GCAACACTCAACCTCTGCATAATTAG 60.676 42.308 0.00 0.00 0.00 1.73
37 38 5.431765 ACACTCAACCTCTGCATAATTAGG 58.568 41.667 0.00 0.00 35.14 2.69
38 39 5.189736 ACACTCAACCTCTGCATAATTAGGA 59.810 40.000 0.32 0.00 33.16 2.94
39 40 6.126652 ACACTCAACCTCTGCATAATTAGGAT 60.127 38.462 0.32 0.00 33.16 3.24
40 41 6.204301 CACTCAACCTCTGCATAATTAGGATG 59.796 42.308 0.32 0.00 34.25 3.51
105 106 8.498054 AAAGGACTGACATATTGATAACAGTG 57.502 34.615 0.00 0.00 38.43 3.66
106 107 6.586344 AGGACTGACATATTGATAACAGTGG 58.414 40.000 0.00 0.00 38.43 4.00
107 108 6.384015 AGGACTGACATATTGATAACAGTGGA 59.616 38.462 0.00 0.00 38.43 4.02
108 109 6.703607 GGACTGACATATTGATAACAGTGGAG 59.296 42.308 0.00 0.00 38.43 3.86
109 110 7.187824 ACTGACATATTGATAACAGTGGAGT 57.812 36.000 0.00 0.00 37.24 3.85
110 111 7.268586 ACTGACATATTGATAACAGTGGAGTC 58.731 38.462 0.00 0.00 37.24 3.36
111 112 7.093333 ACTGACATATTGATAACAGTGGAGTCA 60.093 37.037 0.00 0.00 37.24 3.41
112 113 7.795047 TGACATATTGATAACAGTGGAGTCAT 58.205 34.615 0.00 0.00 0.00 3.06
113 114 8.923270 TGACATATTGATAACAGTGGAGTCATA 58.077 33.333 0.00 0.00 0.00 2.15
114 115 9.935241 GACATATTGATAACAGTGGAGTCATAT 57.065 33.333 0.00 0.00 0.00 1.78
119 120 9.988815 ATTGATAACAGTGGAGTCATATAGAAC 57.011 33.333 0.00 0.00 0.00 3.01
120 121 7.952671 TGATAACAGTGGAGTCATATAGAACC 58.047 38.462 0.00 0.00 0.00 3.62
121 122 7.563556 TGATAACAGTGGAGTCATATAGAACCA 59.436 37.037 0.00 0.00 34.18 3.67
122 123 6.620877 AACAGTGGAGTCATATAGAACCAA 57.379 37.500 0.00 0.00 36.94 3.67
123 124 5.978814 ACAGTGGAGTCATATAGAACCAAC 58.021 41.667 0.00 0.00 36.94 3.77
124 125 5.483937 ACAGTGGAGTCATATAGAACCAACA 59.516 40.000 0.00 0.00 36.94 3.33
125 126 5.812642 CAGTGGAGTCATATAGAACCAACAC 59.187 44.000 0.00 0.00 36.94 3.32
126 127 5.483937 AGTGGAGTCATATAGAACCAACACA 59.516 40.000 0.00 0.00 36.94 3.72
127 128 6.013725 AGTGGAGTCATATAGAACCAACACAA 60.014 38.462 0.00 0.00 36.94 3.33
128 129 6.653320 GTGGAGTCATATAGAACCAACACAAA 59.347 38.462 0.00 0.00 36.94 2.83
129 130 6.878923 TGGAGTCATATAGAACCAACACAAAG 59.121 38.462 0.00 0.00 33.83 2.77
130 131 6.183360 GGAGTCATATAGAACCAACACAAAGC 60.183 42.308 0.00 0.00 0.00 3.51
131 132 6.237901 AGTCATATAGAACCAACACAAAGCA 58.762 36.000 0.00 0.00 0.00 3.91
239 256 3.237268 AGCAGATATTCGAGAGGGTCT 57.763 47.619 0.00 0.00 0.00 3.85
281 298 6.860034 TCCTAGCAAGATAGAGTATTACCCA 58.140 40.000 0.00 0.00 0.00 4.51
290 307 7.355101 AGATAGAGTATTACCCAGTGTCAGAA 58.645 38.462 0.00 0.00 0.00 3.02
298 315 2.224621 ACCCAGTGTCAGAATGTCCAAG 60.225 50.000 0.00 0.00 37.40 3.61
304 321 3.058639 GTGTCAGAATGTCCAAGCTGAAC 60.059 47.826 0.00 0.00 38.92 3.18
323 340 0.320247 CTTTGCTGAGCCTGACGTCT 60.320 55.000 17.92 0.00 0.00 4.18
349 367 0.955919 CAAAGCTTCCGGGTGTCTCC 60.956 60.000 0.00 0.00 0.00 3.71
365 383 4.884164 GTGTCTCCCATTTCCCTCTTTATG 59.116 45.833 0.00 0.00 0.00 1.90
417 435 3.427161 AAGAAAGCCGCTTTATCATGC 57.573 42.857 18.28 5.22 33.49 4.06
548 567 1.370064 CCCAAAACCGAGAGACCGT 59.630 57.895 0.00 0.00 0.00 4.83
565 584 0.460311 CGTAGCATTTCCCTCCTCGT 59.540 55.000 0.00 0.00 0.00 4.18
566 585 1.802880 CGTAGCATTTCCCTCCTCGTG 60.803 57.143 0.00 0.00 0.00 4.35
571 590 1.488705 ATTTCCCTCCTCGTGCACCA 61.489 55.000 12.15 0.00 0.00 4.17
572 591 1.701031 TTTCCCTCCTCGTGCACCAA 61.701 55.000 12.15 0.00 0.00 3.67
579 598 1.021390 CCTCGTGCACCAAGGATCAC 61.021 60.000 22.71 0.00 31.44 3.06
588 619 2.697751 CACCAAGGATCACCAAACCAAA 59.302 45.455 0.00 0.00 38.94 3.28
612 648 3.851845 TTCCGTGGTGTTCTCGGCG 62.852 63.158 0.00 0.00 43.35 6.46
631 672 0.606673 GGAGCTCTTTGGCTTCCGTT 60.607 55.000 14.64 0.00 43.20 4.44
646 687 2.808958 CGTTGGTAAGCGCCCGATG 61.809 63.158 2.29 0.00 0.00 3.84
652 693 0.667792 GTAAGCGCCCGATGATCCTC 60.668 60.000 2.29 0.00 0.00 3.71
658 699 0.319125 GCCCGATGATCCTCGTCTTC 60.319 60.000 17.44 2.27 36.93 2.87
679 720 3.144506 CTCTTCTCTTCAGGCAAGCAAA 58.855 45.455 0.00 0.00 31.26 3.68
710 755 1.465689 CGTTGGACAACCGAATGATGC 60.466 52.381 9.39 0.00 38.03 3.91
729 774 1.226030 CCGCGTTCCGTTCCTCTTTT 61.226 55.000 4.92 0.00 34.38 2.27
730 775 0.110823 CGCGTTCCGTTCCTCTTTTG 60.111 55.000 0.00 0.00 0.00 2.44
731 776 0.385598 GCGTTCCGTTCCTCTTTTGC 60.386 55.000 0.00 0.00 0.00 3.68
732 777 1.226746 CGTTCCGTTCCTCTTTTGCT 58.773 50.000 0.00 0.00 0.00 3.91
733 778 1.069906 CGTTCCGTTCCTCTTTTGCTG 60.070 52.381 0.00 0.00 0.00 4.41
735 780 1.878953 TCCGTTCCTCTTTTGCTGTC 58.121 50.000 0.00 0.00 0.00 3.51
791 836 0.737715 ATTTCGTCGAGCAGCTGGTC 60.738 55.000 31.39 31.39 39.04 4.02
839 886 1.880340 CATCGCCTGCGTTCCTCTC 60.880 63.158 11.68 0.00 40.74 3.20
846 893 0.739112 CTGCGTTCCTCTCCTGCTTC 60.739 60.000 0.00 0.00 0.00 3.86
891 938 3.775316 TCTCGGCCTCTAAATTCCTTCTT 59.225 43.478 0.00 0.00 0.00 2.52
907 954 3.897505 CCTTCTTTTGGGTGGAAACAGAT 59.102 43.478 0.00 0.00 44.46 2.90
927 974 4.271533 AGATGTCGTCTAGATCGAGAACAC 59.728 45.833 7.15 7.62 37.99 3.32
986 1033 2.739609 GCCACTTGTGCTTTCTTGCTTT 60.740 45.455 0.00 0.00 0.00 3.51
988 1035 3.514645 CACTTGTGCTTTCTTGCTTTGT 58.485 40.909 0.00 0.00 0.00 2.83
989 1036 3.305094 CACTTGTGCTTTCTTGCTTTGTG 59.695 43.478 0.00 0.00 0.00 3.33
990 1037 2.582728 TGTGCTTTCTTGCTTTGTGG 57.417 45.000 0.00 0.00 0.00 4.17
991 1038 1.824230 TGTGCTTTCTTGCTTTGTGGT 59.176 42.857 0.00 0.00 0.00 4.16
992 1039 2.233431 TGTGCTTTCTTGCTTTGTGGTT 59.767 40.909 0.00 0.00 0.00 3.67
993 1040 3.261580 GTGCTTTCTTGCTTTGTGGTTT 58.738 40.909 0.00 0.00 0.00 3.27
994 1041 3.062504 GTGCTTTCTTGCTTTGTGGTTTG 59.937 43.478 0.00 0.00 0.00 2.93
995 1042 3.261580 GCTTTCTTGCTTTGTGGTTTGT 58.738 40.909 0.00 0.00 0.00 2.83
1029 1076 2.672307 GCTGCTCACCTTGCTGCT 60.672 61.111 0.00 0.00 46.79 4.24
1030 1077 2.688794 GCTGCTCACCTTGCTGCTC 61.689 63.158 0.00 0.00 46.79 4.26
1032 1079 1.299562 CTGCTCACCTTGCTGCTCTG 61.300 60.000 0.00 0.00 0.00 3.35
1046 1093 0.737019 GCTCTGCTGCTCTGTGTCTC 60.737 60.000 0.00 0.00 0.00 3.36
1059 1106 0.663153 GTGTCTCCATTATTGCCGGC 59.337 55.000 22.73 22.73 0.00 6.13
1077 1124 2.028125 GCGGTGCCATAGCTGGTAGA 62.028 60.000 0.00 0.00 45.10 2.59
1213 1260 1.838112 TGTCAATGCTGATCCAACCC 58.162 50.000 0.00 0.00 33.05 4.11
1264 1311 0.675633 GCAGGACACCAATTGCAGTT 59.324 50.000 0.00 0.00 36.59 3.16
1278 1325 1.134848 TGCAGTTGCTTTGTTGGAACC 60.135 47.619 5.62 0.00 42.66 3.62
1302 1349 7.337942 ACCATTGAAGGTTCATACATCTTTCTC 59.662 37.037 0.00 0.00 39.34 2.87
1318 1365 8.906867 ACATCTTTCTCTTTCATCAGTTTTTCA 58.093 29.630 0.00 0.00 0.00 2.69
1334 1383 8.477256 TCAGTTTTTCATTTCCAAATCTGTCTT 58.523 29.630 0.00 0.00 33.89 3.01
1335 1384 8.545420 CAGTTTTTCATTTCCAAATCTGTCTTG 58.455 33.333 0.00 0.00 30.19 3.02
1370 1453 9.719355 TCTGCAAGTTAGTTTAGTATCAAATCA 57.281 29.630 0.00 0.00 33.76 2.57
1424 1507 8.818622 TTTTCTCCTGCTAGTAACTAGACATA 57.181 34.615 0.00 0.00 36.26 2.29
1430 1513 9.727859 TCCTGCTAGTAACTAGACATAAGATAG 57.272 37.037 0.00 0.00 36.26 2.08
1455 1561 8.768397 AGAAGTTGGTGAATATTACCTGACATA 58.232 33.333 12.44 0.00 39.01 2.29
1463 1577 8.793592 GTGAATATTACCTGACATATTTTCCCC 58.206 37.037 0.00 0.00 0.00 4.81
1479 1593 2.336088 CCCAAGCACGCACCAAAG 59.664 61.111 0.00 0.00 0.00 2.77
1480 1594 2.355009 CCAAGCACGCACCAAAGC 60.355 61.111 0.00 0.00 0.00 3.51
1488 1602 3.632700 GCACCAAAGCGTACGTCA 58.367 55.556 17.90 0.00 0.00 4.35
1489 1603 2.159181 GCACCAAAGCGTACGTCAT 58.841 52.632 17.90 0.16 0.00 3.06
1490 1604 0.515564 GCACCAAAGCGTACGTCATT 59.484 50.000 17.90 6.90 0.00 2.57
1491 1605 1.463528 GCACCAAAGCGTACGTCATTC 60.464 52.381 17.90 0.00 0.00 2.67
1528 1642 1.953686 GCCAAGAAGGTGCAAAGTACA 59.046 47.619 0.00 0.00 40.61 2.90
1529 1643 2.558359 GCCAAGAAGGTGCAAAGTACAT 59.442 45.455 0.00 0.00 40.61 2.29
1530 1644 3.612479 GCCAAGAAGGTGCAAAGTACATG 60.612 47.826 0.00 0.00 40.61 3.21
1531 1645 3.569701 CCAAGAAGGTGCAAAGTACATGT 59.430 43.478 2.69 2.69 0.00 3.21
1532 1646 4.320494 CCAAGAAGGTGCAAAGTACATGTC 60.320 45.833 0.00 0.00 0.00 3.06
1533 1647 4.085357 AGAAGGTGCAAAGTACATGTCA 57.915 40.909 0.00 0.00 0.00 3.58
1534 1648 3.815401 AGAAGGTGCAAAGTACATGTCAC 59.185 43.478 0.00 2.77 0.00 3.67
1535 1649 3.207265 AGGTGCAAAGTACATGTCACA 57.793 42.857 0.00 0.00 31.12 3.58
1536 1650 3.550820 AGGTGCAAAGTACATGTCACAA 58.449 40.909 0.00 0.00 31.12 3.33
1537 1651 3.565482 AGGTGCAAAGTACATGTCACAAG 59.435 43.478 0.00 0.00 31.12 3.16
1538 1652 3.300009 GTGCAAAGTACATGTCACAAGC 58.700 45.455 0.00 3.46 0.00 4.01
1541 1655 3.004734 GCAAAGTACATGTCACAAGCCTT 59.995 43.478 0.00 0.00 0.00 4.35
1563 1677 2.733858 GCTGCGACCAAAACTGAAACAA 60.734 45.455 0.00 0.00 0.00 2.83
1599 1713 5.467735 AGAAGCAAGCAAAATAAAGCCAAAG 59.532 36.000 0.00 0.00 0.00 2.77
1602 1716 3.767902 AGCAAAATAAAGCCAAAGCCA 57.232 38.095 0.00 0.00 41.25 4.75
1603 1717 3.667360 AGCAAAATAAAGCCAAAGCCAG 58.333 40.909 0.00 0.00 41.25 4.85
1627 1741 6.375455 AGACCCAAACAAAACTGCTAGATATG 59.625 38.462 0.00 0.00 0.00 1.78
1643 1757 8.144478 TGCTAGATATGCAAGTTAGGTTTCTAG 58.856 37.037 0.00 0.00 37.51 2.43
1646 1760 8.251383 AGATATGCAAGTTAGGTTTCTAGCTA 57.749 34.615 0.00 0.00 36.26 3.32
1653 1767 6.521151 AGTTAGGTTTCTAGCTACGCTTAA 57.479 37.500 0.00 0.00 40.44 1.85
1673 1787 7.648112 CGCTTAATAACTAGACATGAGTAGCAA 59.352 37.037 0.00 0.00 0.00 3.91
1674 1788 9.482627 GCTTAATAACTAGACATGAGTAGCAAT 57.517 33.333 0.00 0.00 0.00 3.56
1691 1805 8.579850 AGTAGCAATTGGTGAAGATATTTGAA 57.420 30.769 20.13 0.00 0.00 2.69
1695 1809 7.038799 AGCAATTGGTGAAGATATTTGAACCTT 60.039 33.333 9.83 0.00 0.00 3.50
1737 1851 4.540359 TTGCCATTTTAATCTGCTTGCT 57.460 36.364 0.00 0.00 0.00 3.91
1738 1852 4.540359 TGCCATTTTAATCTGCTTGCTT 57.460 36.364 0.00 0.00 0.00 3.91
1739 1853 4.247258 TGCCATTTTAATCTGCTTGCTTG 58.753 39.130 0.00 0.00 0.00 4.01
1740 1854 4.021280 TGCCATTTTAATCTGCTTGCTTGA 60.021 37.500 0.00 0.00 0.00 3.02
1741 1855 4.565564 GCCATTTTAATCTGCTTGCTTGAG 59.434 41.667 0.00 0.00 0.00 3.02
1742 1856 5.107133 CCATTTTAATCTGCTTGCTTGAGG 58.893 41.667 0.00 0.00 0.00 3.86
1775 1939 4.987832 TGCACGTGTTGTATTTCTTTTGT 58.012 34.783 18.38 0.00 0.00 2.83
1776 1940 6.120378 TGCACGTGTTGTATTTCTTTTGTA 57.880 33.333 18.38 0.00 0.00 2.41
1777 1941 5.966503 TGCACGTGTTGTATTTCTTTTGTAC 59.033 36.000 18.38 0.00 0.00 2.90
1778 1942 6.183360 TGCACGTGTTGTATTTCTTTTGTACT 60.183 34.615 18.38 0.00 0.00 2.73
1779 1943 6.356190 GCACGTGTTGTATTTCTTTTGTACTC 59.644 38.462 18.38 0.00 0.00 2.59
1780 1944 6.849305 CACGTGTTGTATTTCTTTTGTACTCC 59.151 38.462 7.58 0.00 0.00 3.85
1781 1945 6.017687 ACGTGTTGTATTTCTTTTGTACTCCC 60.018 38.462 0.00 0.00 0.00 4.30
1782 1946 6.204108 CGTGTTGTATTTCTTTTGTACTCCCT 59.796 38.462 0.00 0.00 0.00 4.20
1783 1947 7.570691 CGTGTTGTATTTCTTTTGTACTCCCTC 60.571 40.741 0.00 0.00 0.00 4.30
1784 1948 7.227910 GTGTTGTATTTCTTTTGTACTCCCTCA 59.772 37.037 0.00 0.00 0.00 3.86
1785 1949 7.444183 TGTTGTATTTCTTTTGTACTCCCTCAG 59.556 37.037 0.00 0.00 0.00 3.35
1786 1950 7.074653 TGTATTTCTTTTGTACTCCCTCAGT 57.925 36.000 0.00 0.00 39.41 3.41
1787 1951 8.197592 TGTATTTCTTTTGTACTCCCTCAGTA 57.802 34.615 0.00 0.00 36.43 2.74
1788 1952 8.653191 TGTATTTCTTTTGTACTCCCTCAGTAA 58.347 33.333 0.00 0.00 39.44 2.24
1789 1953 9.498176 GTATTTCTTTTGTACTCCCTCAGTAAA 57.502 33.333 0.00 0.00 39.44 2.01
1790 1954 8.622948 ATTTCTTTTGTACTCCCTCAGTAAAG 57.377 34.615 0.00 0.00 39.44 1.85
1791 1955 6.989155 TCTTTTGTACTCCCTCAGTAAAGA 57.011 37.500 0.00 0.00 39.44 2.52
1792 1956 7.554959 TCTTTTGTACTCCCTCAGTAAAGAT 57.445 36.000 0.00 0.00 39.44 2.40
1793 1957 7.612677 TCTTTTGTACTCCCTCAGTAAAGATC 58.387 38.462 0.00 0.00 39.44 2.75
1794 1958 7.455008 TCTTTTGTACTCCCTCAGTAAAGATCT 59.545 37.037 0.00 0.00 39.44 2.75
1795 1959 8.660295 TTTTGTACTCCCTCAGTAAAGATCTA 57.340 34.615 0.00 0.00 39.44 1.98
1796 1960 8.660295 TTTGTACTCCCTCAGTAAAGATCTAA 57.340 34.615 0.00 0.00 39.44 2.10
1797 1961 8.660295 TTGTACTCCCTCAGTAAAGATCTAAA 57.340 34.615 0.00 0.00 39.44 1.85
1798 1962 8.064336 TGTACTCCCTCAGTAAAGATCTAAAC 57.936 38.462 0.00 0.00 39.44 2.01
1799 1963 6.210287 ACTCCCTCAGTAAAGATCTAAACG 57.790 41.667 0.00 0.00 31.37 3.60
1800 1964 5.007385 TCCCTCAGTAAAGATCTAAACGC 57.993 43.478 0.00 0.00 0.00 4.84
1801 1965 4.710375 TCCCTCAGTAAAGATCTAAACGCT 59.290 41.667 0.00 0.00 0.00 5.07
1802 1966 5.044558 CCCTCAGTAAAGATCTAAACGCTC 58.955 45.833 0.00 0.00 0.00 5.03
1803 1967 5.163499 CCCTCAGTAAAGATCTAAACGCTCT 60.163 44.000 0.00 0.00 0.00 4.09
1804 1968 6.334202 CCTCAGTAAAGATCTAAACGCTCTT 58.666 40.000 0.00 0.00 29.70 2.85
1805 1969 7.416438 CCCTCAGTAAAGATCTAAACGCTCTTA 60.416 40.741 0.00 0.00 28.52 2.10
1806 1970 8.138712 CCTCAGTAAAGATCTAAACGCTCTTAT 58.861 37.037 0.00 0.00 28.52 1.73
1818 1982 9.241317 TCTAAACGCTCTTATATTTCTTTACGG 57.759 33.333 0.00 0.00 0.00 4.02
1819 1983 9.241317 CTAAACGCTCTTATATTTCTTTACGGA 57.759 33.333 0.00 0.00 0.00 4.69
1820 1984 7.695869 AACGCTCTTATATTTCTTTACGGAG 57.304 36.000 0.00 0.00 0.00 4.63
1821 1985 6.214399 ACGCTCTTATATTTCTTTACGGAGG 58.786 40.000 0.00 0.00 0.00 4.30
1822 1986 5.634020 CGCTCTTATATTTCTTTACGGAGGG 59.366 44.000 0.00 0.00 0.00 4.30
1823 1987 6.516194 CGCTCTTATATTTCTTTACGGAGGGA 60.516 42.308 0.00 0.00 34.63 4.20
1824 1988 6.869388 GCTCTTATATTTCTTTACGGAGGGAG 59.131 42.308 0.00 0.00 0.00 4.30
1874 2038 5.716228 AGCCAACACCATAATCAAATTCAGA 59.284 36.000 0.00 0.00 0.00 3.27
1891 2055 8.742777 CAAATTCAGATACAGAGGAAATTTGGA 58.257 33.333 0.00 0.00 0.00 3.53
1943 2109 2.170397 TCCATGATATCACGGCAACTGT 59.830 45.455 13.08 0.00 0.00 3.55
1944 2110 2.288729 CCATGATATCACGGCAACTGTG 59.711 50.000 7.78 0.00 40.75 3.66
1960 2126 5.830912 CAACTGTGCAAATTTGAGTCCTAA 58.169 37.500 22.31 0.00 0.00 2.69
1961 2127 5.695851 ACTGTGCAAATTTGAGTCCTAAG 57.304 39.130 22.31 10.23 0.00 2.18
1962 2128 4.022849 ACTGTGCAAATTTGAGTCCTAAGC 60.023 41.667 22.31 3.46 0.00 3.09
1965 2131 4.216257 GTGCAAATTTGAGTCCTAAGCAGA 59.784 41.667 22.31 0.00 0.00 4.26
1966 2132 5.012239 TGCAAATTTGAGTCCTAAGCAGAT 58.988 37.500 22.31 0.00 0.00 2.90
1967 2133 5.124457 TGCAAATTTGAGTCCTAAGCAGATC 59.876 40.000 22.31 0.00 0.00 2.75
1968 2134 5.124457 GCAAATTTGAGTCCTAAGCAGATCA 59.876 40.000 22.31 0.00 0.00 2.92
2073 2269 9.965824 TTCAAATCTTGGAAGAGTTTGATAAAC 57.034 29.630 17.85 0.00 40.04 2.01
2155 2351 2.159338 ACAATCATCCGCAATTGCTCAC 60.159 45.455 26.86 0.00 36.54 3.51
2290 2486 5.643348 TGATTACTACCAAATGTCTGCTGTG 59.357 40.000 0.00 0.00 0.00 3.66
2356 2552 6.315642 CCATCTATGTTGATGATGACTATGGC 59.684 42.308 6.12 0.00 44.71 4.40
2426 2622 5.402398 CCAAGATAGCCTACAAAGCAAAAC 58.598 41.667 0.00 0.00 0.00 2.43
2435 2631 1.136891 ACAAAGCAAAACTGCCACCTC 59.863 47.619 0.00 0.00 34.90 3.85
2436 2632 1.136695 CAAAGCAAAACTGCCACCTCA 59.863 47.619 0.00 0.00 34.90 3.86
2462 2658 2.295885 GAAGGACTGCAATCCAGGATG 58.704 52.381 17.91 0.00 46.14 3.51
2464 2660 1.211457 AGGACTGCAATCCAGGATGTC 59.789 52.381 17.91 5.92 46.14 3.06
2494 2690 2.305927 AGTGAATGAAATGGAGTCCCGT 59.694 45.455 6.74 0.00 34.29 5.28
2542 2738 3.008485 ACTCTGGGATGACAGTTTTCTCC 59.992 47.826 0.00 0.00 39.48 3.71
2568 2764 5.067674 CCGCAAAATCTTTAGGGATGATGAA 59.932 40.000 0.00 0.00 0.00 2.57
2621 2817 4.034975 GGCTTTCTGCAGTGATAGATTCAC 59.965 45.833 14.67 0.00 45.71 3.18
2656 2852 2.797491 TCTGATGCGACAGAACATACG 58.203 47.619 9.64 0.00 42.79 3.06
2671 2867 3.043418 ACATACGCAGGGGGTTATTACT 58.957 45.455 0.00 0.00 0.00 2.24
2674 2870 1.761198 ACGCAGGGGGTTATTACTCTC 59.239 52.381 0.00 0.00 0.00 3.20
2748 2944 6.231211 TGAACAATCTGACTAGGAAAGGAAC 58.769 40.000 0.00 0.00 0.00 3.62
2867 3063 7.116805 CAGTATCCTTTTCTGCAAACCAAAATC 59.883 37.037 0.00 0.00 0.00 2.17
2912 3108 5.719085 AGCCTTCAGTTAGATTCTCTCAGAA 59.281 40.000 0.00 0.00 38.78 3.02
2999 3195 5.151389 GCCAAGTACAATTTACTTTGGACG 58.849 41.667 18.95 0.00 43.83 4.79
3046 3242 4.223953 ACATCCTGAATATCGGTGGTACT 58.776 43.478 0.00 0.00 0.00 2.73
3107 3303 1.001746 TCTCAGTTGCTGCTCCAGAAG 59.998 52.381 0.00 0.00 32.44 2.85
3122 3318 5.426504 CTCCAGAAGACTTGCATTCAGTAT 58.573 41.667 0.00 0.00 0.00 2.12
3128 3324 4.511527 AGACTTGCATTCAGTATCACTGG 58.488 43.478 6.48 0.00 45.94 4.00
3148 3344 6.481313 CACTGGACTCTACAACCAATGATATG 59.519 42.308 0.00 0.00 33.56 1.78
3227 3423 0.988832 TCCGTACCATGGGAAGCTTT 59.011 50.000 18.09 0.00 0.00 3.51
3235 3431 4.281657 ACCATGGGAAGCTTTTAAGGATC 58.718 43.478 18.09 0.00 0.00 3.36
3238 3434 2.307686 TGGGAAGCTTTTAAGGATCGGT 59.692 45.455 0.00 0.00 0.00 4.69
3241 3437 3.756963 GGAAGCTTTTAAGGATCGGTGTT 59.243 43.478 0.00 0.00 0.00 3.32
3268 3464 3.678072 TGCGTACAAGCTACAATGAGTTC 59.322 43.478 0.00 0.00 38.13 3.01
3352 3548 3.739401 ATAAGCTTGTTGCCTTACCCT 57.261 42.857 9.86 0.00 44.23 4.34
3385 3581 6.705825 GCAGTTTTGTTTTATTTGGAGATGGT 59.294 34.615 0.00 0.00 0.00 3.55
3386 3582 7.226523 GCAGTTTTGTTTTATTTGGAGATGGTT 59.773 33.333 0.00 0.00 0.00 3.67
3441 3637 3.660865 AGGTGTCCGAAAATGTGAGTAC 58.339 45.455 0.00 0.00 0.00 2.73
3998 4195 7.918076 TCTTTTGGTTCACTCTTATATCCACT 58.082 34.615 0.00 0.00 0.00 4.00
4124 4322 4.063689 CAAGCTTGACATCACTTCTCACT 58.936 43.478 22.31 0.00 0.00 3.41
4130 4328 4.625028 TGACATCACTTCTCACTGTTCAG 58.375 43.478 0.00 0.00 0.00 3.02
4134 4332 3.300388 TCACTTCTCACTGTTCAGGAGT 58.700 45.455 4.82 0.00 0.00 3.85
4142 4340 4.556233 TCACTGTTCAGGAGTTAACATCG 58.444 43.478 8.61 0.00 35.21 3.84
4146 4344 2.235402 GTTCAGGAGTTAACATCGGGGA 59.765 50.000 8.61 0.00 0.00 4.81
4163 4361 4.966805 TCGGGGATAAAAGGTCTTGATAGT 59.033 41.667 0.00 0.00 0.00 2.12
4181 4379 8.709386 TTGATAGTTTGATCTCTAGTTCAAGC 57.291 34.615 8.68 8.68 35.80 4.01
4244 4442 0.315251 TGGAGGAGCTCAATATCGCG 59.685 55.000 17.19 0.00 31.08 5.87
4283 4481 4.576463 CCACTAAACAGCCCATCTGATTAC 59.424 45.833 0.00 0.00 45.72 1.89
4307 4505 1.850345 AGAGCACTAGAGCTAGGGTCT 59.150 52.381 15.03 15.61 46.75 3.85
4343 4541 2.546789 TGCTGCAATAATCGATGAGCTG 59.453 45.455 0.00 6.43 0.00 4.24
4362 4560 3.739519 GCTGCCATACGTTGAGATCTTCT 60.740 47.826 0.00 0.00 0.00 2.85
4370 4568 5.914085 ACGTTGAGATCTTCTTGTCAAAG 57.086 39.130 0.00 0.71 35.38 2.77
4391 4589 7.170320 TCAAAGTACTGTAAATTCAAGACGGTC 59.830 37.037 0.00 0.00 34.55 4.79
4410 4608 3.488553 GGTCGGTCAGGTTTTCACAAAAG 60.489 47.826 0.00 0.00 0.00 2.27
4412 4610 2.425668 CGGTCAGGTTTTCACAAAAGGT 59.574 45.455 0.00 0.00 0.00 3.50
4490 4688 7.544804 AAAAAGAAGGATCAAATAACTGGCT 57.455 32.000 0.00 0.00 0.00 4.75
4494 4692 8.650143 AAGAAGGATCAAATAACTGGCTTTTA 57.350 30.769 0.00 0.00 0.00 1.52
4496 4694 9.259832 AGAAGGATCAAATAACTGGCTTTTATT 57.740 29.630 0.00 0.00 31.72 1.40
4497 4695 9.521503 GAAGGATCAAATAACTGGCTTTTATTC 57.478 33.333 0.00 0.00 30.40 1.75
4498 4696 8.829373 AGGATCAAATAACTGGCTTTTATTCT 57.171 30.769 0.00 0.00 30.40 2.40
4499 4697 8.907885 AGGATCAAATAACTGGCTTTTATTCTC 58.092 33.333 0.00 3.83 30.40 2.87
4550 4754 1.471684 CTGCAGGCATTTCCAAGAGAC 59.528 52.381 5.57 0.00 37.29 3.36
4553 4757 2.617532 GCAGGCATTTCCAAGAGACTCT 60.618 50.000 0.00 0.00 37.29 3.24
4565 4769 0.738389 GAGACTCTCCTCTTGCCGAG 59.262 60.000 0.00 0.00 39.57 4.63
4669 4873 5.453158 AGGATGTGAGTCAGATGATAGTGA 58.547 41.667 7.63 0.00 0.00 3.41
4671 4875 4.645762 TGTGAGTCAGATGATAGTGAGC 57.354 45.455 0.00 0.00 0.00 4.26
4673 4877 4.337836 TGTGAGTCAGATGATAGTGAGCTC 59.662 45.833 6.82 6.82 0.00 4.09
4674 4878 3.563390 TGAGTCAGATGATAGTGAGCTCG 59.437 47.826 9.64 0.00 0.00 5.03
4676 4880 2.621055 GTCAGATGATAGTGAGCTCGGT 59.379 50.000 9.64 0.56 0.00 4.69
4712 4916 1.676967 GTCAAGCTTCTGGGGCCTG 60.677 63.158 0.84 0.00 0.00 4.85
4718 4922 1.809567 GCTTCTGGGGCCTGTTTGTG 61.810 60.000 0.84 0.00 0.00 3.33
4738 4942 2.048877 GTGTGGCCTTGCATGTGC 60.049 61.111 3.32 0.00 42.50 4.57
4806 5010 6.260936 CAGCAAGTATAATAACCAGGTTGAGG 59.739 42.308 15.82 0.00 0.00 3.86
4956 5160 4.116747 AGAATCGGCACTACAGAAGAAG 57.883 45.455 0.00 0.00 0.00 2.85
4977 5181 2.032549 GCATCTACATTGCCGCTGTAAG 60.033 50.000 0.00 0.00 33.95 2.34
4981 5185 2.185004 ACATTGCCGCTGTAAGACTT 57.815 45.000 0.00 0.00 34.07 3.01
4982 5186 3.328382 ACATTGCCGCTGTAAGACTTA 57.672 42.857 0.00 0.00 34.07 2.24
4983 5187 3.000727 ACATTGCCGCTGTAAGACTTAC 58.999 45.455 16.97 16.97 34.07 2.34
4984 5188 1.705256 TTGCCGCTGTAAGACTTACG 58.295 50.000 18.23 14.16 38.98 3.18
4990 5194 4.418392 CCGCTGTAAGACTTACGTACATT 58.582 43.478 18.23 0.00 41.10 2.71
5013 5217 3.002042 GCTGCTGCATGACTAACATAGTG 59.998 47.826 11.11 0.00 37.95 2.74
5091 5295 4.175489 CGATGGACCGACGACGCT 62.175 66.667 0.64 0.00 38.29 5.07
5107 5311 1.063469 ACGCTGTTTTCTTGTGTTCCG 59.937 47.619 0.00 0.00 0.00 4.30
5165 5372 6.042638 AGCAGCTGAAGTAGAGTATTTTCA 57.957 37.500 20.43 0.00 0.00 2.69
5178 5385 9.599322 GTAGAGTATTTTCACTGAAACATGTTG 57.401 33.333 12.82 2.07 30.83 3.33
5486 5827 5.457473 GCATCTCTACTCTTTCGCTTAACTC 59.543 44.000 0.00 0.00 0.00 3.01
5520 5864 0.324738 TCCCAGCAGACTCGAATCCT 60.325 55.000 0.00 0.00 0.00 3.24
5550 5894 7.921214 CGAGCTTAATTAACATTCTCCTCTGTA 59.079 37.037 0.00 0.00 0.00 2.74
5562 5906 4.825422 TCTCCTCTGTAACTGCAGAATTG 58.175 43.478 23.35 6.44 43.92 2.32
5565 5909 4.040339 TCCTCTGTAACTGCAGAATTGACA 59.960 41.667 23.35 14.41 43.92 3.58
5612 5956 7.230108 ACATTGCTCAAAAAGAAATCTCTCTCA 59.770 33.333 0.00 0.00 29.96 3.27
5670 6018 1.206371 GCTGCAAGGCAATGAAGGAAT 59.794 47.619 0.00 0.00 38.41 3.01
5677 6025 4.748277 AGGCAATGAAGGAATGGAATTG 57.252 40.909 0.00 0.00 36.07 2.32
5783 6205 5.245526 GTCTCCCGGGATATCTTTTAGCTTA 59.754 44.000 27.07 0.00 0.00 3.09
5787 6209 6.940298 TCCCGGGATATCTTTTAGCTTATTTG 59.060 38.462 22.63 0.00 0.00 2.32
5789 6211 7.611855 CCCGGGATATCTTTTAGCTTATTTGAT 59.388 37.037 18.48 0.00 0.00 2.57
5802 6224 7.047460 AGCTTATTTGATTCATTGATGGTCC 57.953 36.000 0.00 0.00 0.00 4.46
5804 6226 6.183360 GCTTATTTGATTCATTGATGGTCCCA 60.183 38.462 0.00 0.00 0.00 4.37
5805 6227 5.864418 ATTTGATTCATTGATGGTCCCAG 57.136 39.130 0.00 0.00 0.00 4.45
5806 6228 4.320546 TTGATTCATTGATGGTCCCAGT 57.679 40.909 0.00 0.00 0.00 4.00
5807 6229 4.320546 TGATTCATTGATGGTCCCAGTT 57.679 40.909 0.00 0.00 0.00 3.16
5808 6230 5.449297 TGATTCATTGATGGTCCCAGTTA 57.551 39.130 0.00 0.00 0.00 2.24
5809 6231 5.825532 TGATTCATTGATGGTCCCAGTTAA 58.174 37.500 0.00 0.00 0.00 2.01
5825 6247 6.071051 TCCCAGTTAATTAAGTTTGATTGCCC 60.071 38.462 2.65 0.00 0.00 5.36
5826 6248 6.295575 CCCAGTTAATTAAGTTTGATTGCCCA 60.296 38.462 2.65 0.00 0.00 5.36
5827 6249 6.813152 CCAGTTAATTAAGTTTGATTGCCCAG 59.187 38.462 2.65 0.00 0.00 4.45
5828 6250 6.813152 CAGTTAATTAAGTTTGATTGCCCAGG 59.187 38.462 2.65 0.00 0.00 4.45
5829 6251 6.723977 AGTTAATTAAGTTTGATTGCCCAGGA 59.276 34.615 0.00 0.00 0.00 3.86
5830 6252 7.400052 AGTTAATTAAGTTTGATTGCCCAGGAT 59.600 33.333 0.00 0.00 0.00 3.24
5831 6253 8.691797 GTTAATTAAGTTTGATTGCCCAGGATA 58.308 33.333 0.00 0.00 0.00 2.59
5832 6254 6.715347 ATTAAGTTTGATTGCCCAGGATAC 57.285 37.500 0.00 0.00 0.00 2.24
5833 6255 3.018423 AGTTTGATTGCCCAGGATACC 57.982 47.619 0.00 0.00 37.17 2.73
5834 6256 2.031870 GTTTGATTGCCCAGGATACCC 58.968 52.381 0.00 0.00 37.17 3.69
5847 6269 3.260380 CAGGATACCCTAATCTGCTCCTG 59.740 52.174 0.00 0.00 42.02 3.86
5867 6295 2.361757 TGACTGCAACCAAATTCAGGTG 59.638 45.455 3.52 0.00 39.86 4.00
5870 6298 1.336440 TGCAACCAAATTCAGGTGACG 59.664 47.619 3.52 0.00 39.86 4.35
5873 6301 3.371168 CAACCAAATTCAGGTGACGTTG 58.629 45.455 3.52 0.00 39.86 4.10
5918 6346 4.532521 TCCTCTTCCAGAAAAGGAGTAAGG 59.467 45.833 0.00 0.00 39.25 2.69
5921 6349 3.418684 TCCAGAAAAGGAGTAAGGCAC 57.581 47.619 0.00 0.00 32.77 5.01
5931 6359 0.536460 AGTAAGGCACCAACCAACCG 60.536 55.000 0.00 0.00 0.00 4.44
5949 6377 1.339631 CCGCTTGTTGATTGGAGGGTA 60.340 52.381 0.00 0.00 0.00 3.69
5950 6378 2.643551 CGCTTGTTGATTGGAGGGTAT 58.356 47.619 0.00 0.00 0.00 2.73
5951 6379 2.355756 CGCTTGTTGATTGGAGGGTATG 59.644 50.000 0.00 0.00 0.00 2.39
5952 6380 2.099756 GCTTGTTGATTGGAGGGTATGC 59.900 50.000 0.00 0.00 0.00 3.14
5953 6381 2.036958 TGTTGATTGGAGGGTATGCG 57.963 50.000 0.00 0.00 0.00 4.73
5954 6382 1.280710 TGTTGATTGGAGGGTATGCGT 59.719 47.619 0.00 0.00 0.00 5.24
5955 6383 1.670811 GTTGATTGGAGGGTATGCGTG 59.329 52.381 0.00 0.00 0.00 5.34
5956 6384 0.463654 TGATTGGAGGGTATGCGTGC 60.464 55.000 0.00 0.00 0.00 5.34
5957 6385 0.463654 GATTGGAGGGTATGCGTGCA 60.464 55.000 0.00 0.00 0.00 4.57
5958 6386 0.183492 ATTGGAGGGTATGCGTGCAT 59.817 50.000 12.54 12.54 40.19 3.96
5959 6387 0.034574 TTGGAGGGTATGCGTGCATT 60.035 50.000 13.20 0.00 37.82 3.56
5960 6388 0.034574 TGGAGGGTATGCGTGCATTT 60.035 50.000 13.20 0.00 37.82 2.32
5961 6389 0.663153 GGAGGGTATGCGTGCATTTC 59.337 55.000 13.20 6.87 37.82 2.17
5962 6390 1.378531 GAGGGTATGCGTGCATTTCA 58.621 50.000 13.20 0.00 37.82 2.69
5963 6391 1.949525 GAGGGTATGCGTGCATTTCAT 59.050 47.619 13.20 3.51 37.82 2.57
5964 6392 1.949525 AGGGTATGCGTGCATTTCATC 59.050 47.619 13.20 0.00 37.82 2.92
5965 6393 1.675483 GGGTATGCGTGCATTTCATCA 59.325 47.619 13.20 0.00 37.82 3.07
5966 6394 2.098934 GGGTATGCGTGCATTTCATCAA 59.901 45.455 13.20 0.00 37.82 2.57
5967 6395 3.365832 GGTATGCGTGCATTTCATCAAG 58.634 45.455 13.20 0.00 37.82 3.02
5968 6396 3.065233 GGTATGCGTGCATTTCATCAAGA 59.935 43.478 13.20 0.00 37.82 3.02
5969 6397 2.905959 TGCGTGCATTTCATCAAGAG 57.094 45.000 0.00 0.00 0.00 2.85
5970 6398 1.469703 TGCGTGCATTTCATCAAGAGG 59.530 47.619 0.00 0.00 0.00 3.69
5971 6399 1.470098 GCGTGCATTTCATCAAGAGGT 59.530 47.619 0.00 0.00 0.00 3.85
5972 6400 2.730090 GCGTGCATTTCATCAAGAGGTG 60.730 50.000 0.00 0.00 0.00 4.00
5973 6401 2.159476 CGTGCATTTCATCAAGAGGTGG 60.159 50.000 0.00 0.00 0.00 4.61
5974 6402 3.084039 GTGCATTTCATCAAGAGGTGGA 58.916 45.455 0.00 0.00 0.00 4.02
5975 6403 3.698040 GTGCATTTCATCAAGAGGTGGAT 59.302 43.478 0.00 0.00 0.00 3.41
5976 6404 4.159135 GTGCATTTCATCAAGAGGTGGATT 59.841 41.667 0.00 0.00 0.00 3.01
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
9 10 0.871057 GCAGAGGTTGAGTGTTGCTC 59.129 55.000 0.00 0.00 44.36 4.26
10 11 0.181114 TGCAGAGGTTGAGTGTTGCT 59.819 50.000 0.00 0.00 33.00 3.91
11 12 1.242076 ATGCAGAGGTTGAGTGTTGC 58.758 50.000 0.00 0.00 0.00 4.17
12 13 5.633830 AATTATGCAGAGGTTGAGTGTTG 57.366 39.130 0.00 0.00 0.00 3.33
13 14 5.882557 CCTAATTATGCAGAGGTTGAGTGTT 59.117 40.000 0.00 0.00 0.00 3.32
14 15 5.189736 TCCTAATTATGCAGAGGTTGAGTGT 59.810 40.000 0.00 0.00 0.00 3.55
15 16 5.674525 TCCTAATTATGCAGAGGTTGAGTG 58.325 41.667 0.00 0.00 0.00 3.51
16 17 5.957771 TCCTAATTATGCAGAGGTTGAGT 57.042 39.130 0.00 0.00 0.00 3.41
17 18 6.798315 CATCCTAATTATGCAGAGGTTGAG 57.202 41.667 0.00 0.00 32.66 3.02
79 80 8.950210 CACTGTTATCAATATGTCAGTCCTTTT 58.050 33.333 0.00 0.00 34.57 2.27
80 81 7.554118 CCACTGTTATCAATATGTCAGTCCTTT 59.446 37.037 0.00 0.00 34.57 3.11
81 82 7.050377 CCACTGTTATCAATATGTCAGTCCTT 58.950 38.462 0.00 0.00 34.57 3.36
82 83 6.384015 TCCACTGTTATCAATATGTCAGTCCT 59.616 38.462 0.00 0.00 34.57 3.85
83 84 6.582636 TCCACTGTTATCAATATGTCAGTCC 58.417 40.000 0.00 0.00 34.57 3.85
84 85 7.268586 ACTCCACTGTTATCAATATGTCAGTC 58.731 38.462 0.00 0.00 34.57 3.51
85 86 7.093333 TGACTCCACTGTTATCAATATGTCAGT 60.093 37.037 0.00 0.00 36.73 3.41
86 87 7.267857 TGACTCCACTGTTATCAATATGTCAG 58.732 38.462 0.00 0.00 0.00 3.51
87 88 7.181569 TGACTCCACTGTTATCAATATGTCA 57.818 36.000 0.00 0.00 0.00 3.58
88 89 9.935241 ATATGACTCCACTGTTATCAATATGTC 57.065 33.333 0.00 0.00 0.00 3.06
93 94 9.988815 GTTCTATATGACTCCACTGTTATCAAT 57.011 33.333 0.00 0.00 0.00 2.57
94 95 8.421784 GGTTCTATATGACTCCACTGTTATCAA 58.578 37.037 0.00 0.00 0.00 2.57
95 96 7.563556 TGGTTCTATATGACTCCACTGTTATCA 59.436 37.037 0.00 0.00 0.00 2.15
96 97 7.952671 TGGTTCTATATGACTCCACTGTTATC 58.047 38.462 0.00 0.00 0.00 1.75
97 98 7.914427 TGGTTCTATATGACTCCACTGTTAT 57.086 36.000 0.00 0.00 0.00 1.89
98 99 7.179516 TGTTGGTTCTATATGACTCCACTGTTA 59.820 37.037 0.00 0.00 31.74 2.41
99 100 6.013725 TGTTGGTTCTATATGACTCCACTGTT 60.014 38.462 0.00 0.00 31.74 3.16
100 101 5.483937 TGTTGGTTCTATATGACTCCACTGT 59.516 40.000 0.00 0.00 31.74 3.55
101 102 5.812642 GTGTTGGTTCTATATGACTCCACTG 59.187 44.000 0.00 0.00 31.74 3.66
102 103 5.483937 TGTGTTGGTTCTATATGACTCCACT 59.516 40.000 0.00 0.00 31.74 4.00
103 104 5.730550 TGTGTTGGTTCTATATGACTCCAC 58.269 41.667 0.00 0.00 31.74 4.02
104 105 6.367374 TTGTGTTGGTTCTATATGACTCCA 57.633 37.500 0.00 0.00 0.00 3.86
105 106 6.183360 GCTTTGTGTTGGTTCTATATGACTCC 60.183 42.308 0.00 0.00 0.00 3.85
106 107 6.371548 TGCTTTGTGTTGGTTCTATATGACTC 59.628 38.462 0.00 0.00 0.00 3.36
107 108 6.237901 TGCTTTGTGTTGGTTCTATATGACT 58.762 36.000 0.00 0.00 0.00 3.41
108 109 6.149474 ACTGCTTTGTGTTGGTTCTATATGAC 59.851 38.462 0.00 0.00 0.00 3.06
109 110 6.149308 CACTGCTTTGTGTTGGTTCTATATGA 59.851 38.462 0.00 0.00 33.61 2.15
110 111 6.317088 CACTGCTTTGTGTTGGTTCTATATG 58.683 40.000 0.00 0.00 33.61 1.78
111 112 5.106157 GCACTGCTTTGTGTTGGTTCTATAT 60.106 40.000 0.00 0.00 39.89 0.86
112 113 4.215399 GCACTGCTTTGTGTTGGTTCTATA 59.785 41.667 0.00 0.00 39.89 1.31
113 114 3.004734 GCACTGCTTTGTGTTGGTTCTAT 59.995 43.478 0.00 0.00 39.89 1.98
114 115 2.357637 GCACTGCTTTGTGTTGGTTCTA 59.642 45.455 0.00 0.00 39.89 2.10
115 116 1.134946 GCACTGCTTTGTGTTGGTTCT 59.865 47.619 0.00 0.00 39.89 3.01
116 117 1.135141 TGCACTGCTTTGTGTTGGTTC 60.135 47.619 1.98 0.00 39.89 3.62
117 118 0.894141 TGCACTGCTTTGTGTTGGTT 59.106 45.000 1.98 0.00 39.89 3.67
118 119 0.173255 GTGCACTGCTTTGTGTTGGT 59.827 50.000 10.32 0.00 39.89 3.67
119 120 0.457035 AGTGCACTGCTTTGTGTTGG 59.543 50.000 20.97 0.00 39.89 3.77
120 121 1.552226 CAGTGCACTGCTTTGTGTTG 58.448 50.000 32.39 7.46 39.89 3.33
131 132 4.826274 AACCATACAGATACAGTGCACT 57.174 40.909 15.25 15.25 0.00 4.40
270 287 5.978814 ACATTCTGACACTGGGTAATACTC 58.021 41.667 0.00 0.00 0.00 2.59
271 288 5.104900 GGACATTCTGACACTGGGTAATACT 60.105 44.000 0.00 0.00 0.00 2.12
272 289 5.116882 GGACATTCTGACACTGGGTAATAC 58.883 45.833 0.00 0.00 0.00 1.89
273 290 4.780554 TGGACATTCTGACACTGGGTAATA 59.219 41.667 0.00 0.00 0.00 0.98
274 291 3.587061 TGGACATTCTGACACTGGGTAAT 59.413 43.478 0.00 0.00 0.00 1.89
281 298 2.369860 TCAGCTTGGACATTCTGACACT 59.630 45.455 0.00 0.00 31.35 3.55
290 307 2.295349 CAGCAAAGTTCAGCTTGGACAT 59.705 45.455 0.37 0.00 39.50 3.06
298 315 0.240411 CAGGCTCAGCAAAGTTCAGC 59.760 55.000 0.00 0.00 0.00 4.26
304 321 0.320247 AGACGTCAGGCTCAGCAAAG 60.320 55.000 19.50 0.00 0.00 2.77
323 340 2.250939 CCGGAAGCTTTGTGTCGCA 61.251 57.895 0.00 0.00 0.00 5.10
349 367 3.902218 TCAGCCATAAAGAGGGAAATGG 58.098 45.455 0.00 0.00 41.55 3.16
365 383 1.066152 GCGATTGGATTCCTTTCAGCC 59.934 52.381 3.95 0.00 0.00 4.85
507 525 4.003648 GGGATATTTGTAGCCATTCTCCG 58.996 47.826 0.00 0.00 0.00 4.63
544 563 0.831307 GAGGAGGGAAATGCTACGGT 59.169 55.000 0.00 0.00 0.00 4.83
548 567 0.178068 GCACGAGGAGGGAAATGCTA 59.822 55.000 0.00 0.00 0.00 3.49
565 584 1.327303 GTTTGGTGATCCTTGGTGCA 58.673 50.000 0.00 0.00 34.23 4.57
566 585 0.603065 GGTTTGGTGATCCTTGGTGC 59.397 55.000 0.00 0.00 34.23 5.01
571 590 2.884639 CTCGTTTGGTTTGGTGATCCTT 59.115 45.455 0.00 0.00 34.23 3.36
572 591 2.504367 CTCGTTTGGTTTGGTGATCCT 58.496 47.619 0.00 0.00 34.23 3.24
588 619 1.068585 GAACACCACGGAACCTCGT 59.931 57.895 0.00 0.00 44.91 4.18
612 648 0.606673 AACGGAAGCCAAAGAGCTCC 60.607 55.000 10.93 0.00 44.11 4.70
631 672 1.069090 GATCATCGGGCGCTTACCA 59.931 57.895 7.64 0.00 0.00 3.25
646 687 4.638421 TGAAGAGAAGAGAAGACGAGGATC 59.362 45.833 0.00 0.00 0.00 3.36
652 693 2.230025 TGCCTGAAGAGAAGAGAAGACG 59.770 50.000 0.00 0.00 0.00 4.18
658 699 2.469274 TGCTTGCCTGAAGAGAAGAG 57.531 50.000 0.00 0.00 32.82 2.85
730 775 3.117171 CAGCTCACCTGCGACAGC 61.117 66.667 0.00 0.00 45.41 4.40
827 874 0.739112 GAAGCAGGAGAGGAACGCAG 60.739 60.000 0.00 0.00 0.00 5.18
839 886 1.339535 GGAACCAGGAGAAGAAGCAGG 60.340 57.143 0.00 0.00 0.00 4.85
846 893 0.247736 CACCGAGGAACCAGGAGAAG 59.752 60.000 11.16 0.00 0.00 2.85
891 938 2.226330 CGACATCTGTTTCCACCCAAA 58.774 47.619 0.00 0.00 0.00 3.28
907 954 3.332034 TGTGTTCTCGATCTAGACGACA 58.668 45.455 11.68 0.57 35.88 4.35
927 974 3.119101 ACCAGAAGCTAACACGGATACTG 60.119 47.826 0.00 0.00 0.00 2.74
986 1033 1.462731 GCCCATCTGCACAAACCACA 61.463 55.000 0.00 0.00 0.00 4.17
988 1035 1.153524 AGCCCATCTGCACAAACCA 59.846 52.632 0.00 0.00 0.00 3.67
989 1036 1.588082 CAGCCCATCTGCACAAACC 59.412 57.895 0.00 0.00 35.78 3.27
1008 1055 1.600076 AGCAAGGTGAGCAGCAGTG 60.600 57.895 0.00 1.39 0.00 3.66
1009 1056 1.600076 CAGCAAGGTGAGCAGCAGT 60.600 57.895 0.00 0.00 0.00 4.40
1010 1057 2.979197 GCAGCAAGGTGAGCAGCAG 61.979 63.158 3.05 0.00 43.05 4.24
1011 1058 2.981909 GCAGCAAGGTGAGCAGCA 60.982 61.111 3.05 0.00 43.05 4.41
1012 1059 2.672307 AGCAGCAAGGTGAGCAGC 60.672 61.111 3.05 0.00 43.76 5.25
1029 1076 0.829182 TGGAGACACAGAGCAGCAGA 60.829 55.000 0.00 0.00 33.40 4.26
1030 1077 1.670015 TGGAGACACAGAGCAGCAG 59.330 57.895 0.00 0.00 33.40 4.24
1046 1093 2.721231 CACCGCCGGCAATAATGG 59.279 61.111 28.98 20.57 0.00 3.16
1071 1118 1.357137 TGGTGCCATTCTGTCTACCA 58.643 50.000 0.00 0.00 35.97 3.25
1073 1120 2.684881 CCATTGGTGCCATTCTGTCTAC 59.315 50.000 0.00 0.00 0.00 2.59
1077 1124 1.597797 CGCCATTGGTGCCATTCTGT 61.598 55.000 2.75 0.00 0.00 3.41
1213 1260 0.981943 AGTTTTGTCCCGGGGAGTAG 59.018 55.000 23.50 0.00 29.39 2.57
1264 1311 3.181467 CCTTCAATGGTTCCAACAAAGCA 60.181 43.478 0.00 0.00 40.57 3.91
1278 1325 8.503458 AGAGAAAGATGTATGAACCTTCAATG 57.497 34.615 0.00 0.00 41.13 2.82
1398 1481 7.534723 TGTCTAGTTACTAGCAGGAGAAAAA 57.465 36.000 14.11 0.00 34.36 1.94
1399 1482 7.719871 ATGTCTAGTTACTAGCAGGAGAAAA 57.280 36.000 14.11 0.00 34.36 2.29
1400 1483 8.818622 TTATGTCTAGTTACTAGCAGGAGAAA 57.181 34.615 14.11 0.00 34.36 2.52
1401 1484 8.272889 TCTTATGTCTAGTTACTAGCAGGAGAA 58.727 37.037 14.11 8.08 34.36 2.87
1402 1485 7.803131 TCTTATGTCTAGTTACTAGCAGGAGA 58.197 38.462 14.11 16.09 34.36 3.71
1403 1486 8.630054 ATCTTATGTCTAGTTACTAGCAGGAG 57.370 38.462 14.11 14.60 34.36 3.69
1404 1487 9.727859 CTATCTTATGTCTAGTTACTAGCAGGA 57.272 37.037 14.11 13.41 34.36 3.86
1405 1488 9.727859 TCTATCTTATGTCTAGTTACTAGCAGG 57.272 37.037 14.11 9.74 34.36 4.85
1424 1507 9.838339 CAGGTAATATTCACCAACTTCTATCTT 57.162 33.333 13.30 0.00 38.62 2.40
1430 1513 7.865706 ATGTCAGGTAATATTCACCAACTTC 57.134 36.000 13.30 4.09 38.62 3.01
1437 1520 8.793592 GGGGAAAATATGTCAGGTAATATTCAC 58.206 37.037 0.00 0.00 30.44 3.18
1447 1530 2.695147 GCTTGGGGGAAAATATGTCAGG 59.305 50.000 0.00 0.00 0.00 3.86
1455 1561 1.532794 TGCGTGCTTGGGGGAAAAT 60.533 52.632 0.00 0.00 0.00 1.82
1463 1577 2.355009 GCTTTGGTGCGTGCTTGG 60.355 61.111 0.00 0.00 0.00 3.61
1490 1604 6.880484 TCTTGGCGGTTTATTCTAATACAGA 58.120 36.000 0.00 0.00 0.00 3.41
1491 1605 7.254795 CCTTCTTGGCGGTTTATTCTAATACAG 60.255 40.741 0.00 0.00 0.00 2.74
1528 1642 1.859427 CGCAGCAAGGCTTGTGACAT 61.859 55.000 26.71 7.09 36.40 3.06
1529 1643 2.545596 CGCAGCAAGGCTTGTGACA 61.546 57.895 26.71 0.00 36.40 3.58
1530 1644 2.253452 CGCAGCAAGGCTTGTGAC 59.747 61.111 26.71 15.38 36.40 3.67
1531 1645 2.110835 TCGCAGCAAGGCTTGTGA 59.889 55.556 26.71 16.79 36.40 3.58
1532 1646 2.253452 GTCGCAGCAAGGCTTGTG 59.747 61.111 26.71 22.33 36.40 3.33
1533 1647 2.980233 GGTCGCAGCAAGGCTTGT 60.980 61.111 26.71 12.11 36.40 3.16
1534 1648 2.074230 TTTGGTCGCAGCAAGGCTTG 62.074 55.000 22.75 22.75 36.40 4.01
1535 1649 1.391157 TTTTGGTCGCAGCAAGGCTT 61.391 50.000 0.00 0.00 36.40 4.35
1536 1650 1.827789 TTTTGGTCGCAGCAAGGCT 60.828 52.632 0.00 0.00 40.77 4.58
1537 1651 1.661509 GTTTTGGTCGCAGCAAGGC 60.662 57.895 0.00 0.00 36.89 4.35
1538 1652 0.318107 CAGTTTTGGTCGCAGCAAGG 60.318 55.000 0.00 0.00 36.89 3.61
1541 1655 1.098869 TTTCAGTTTTGGTCGCAGCA 58.901 45.000 0.00 0.00 0.00 4.41
1563 1677 7.510549 TTTGCTTGCTTCTCTACATAAGTTT 57.489 32.000 0.00 0.00 0.00 2.66
1599 1713 1.806247 GCAGTTTTGTTTGGGTCTGGC 60.806 52.381 0.00 0.00 0.00 4.85
1602 1716 4.164843 TCTAGCAGTTTTGTTTGGGTCT 57.835 40.909 0.00 0.00 0.00 3.85
1603 1717 6.555315 CATATCTAGCAGTTTTGTTTGGGTC 58.445 40.000 0.00 0.00 0.00 4.46
1646 1760 7.140048 GCTACTCATGTCTAGTTATTAAGCGT 58.860 38.462 0.00 0.00 0.00 5.07
1653 1767 7.712639 CACCAATTGCTACTCATGTCTAGTTAT 59.287 37.037 0.00 0.00 0.00 1.89
1673 1787 8.840321 CGATAAGGTTCAAATATCTTCACCAAT 58.160 33.333 0.00 0.00 0.00 3.16
1674 1788 7.827236 ACGATAAGGTTCAAATATCTTCACCAA 59.173 33.333 0.00 0.00 0.00 3.67
1737 1851 2.357637 CGTGCAAGGAAAGAAACCTCAA 59.642 45.455 0.00 0.00 36.67 3.02
1738 1852 1.946768 CGTGCAAGGAAAGAAACCTCA 59.053 47.619 0.00 0.00 36.67 3.86
1739 1853 1.947456 ACGTGCAAGGAAAGAAACCTC 59.053 47.619 4.26 0.00 36.67 3.85
1740 1854 1.676006 CACGTGCAAGGAAAGAAACCT 59.324 47.619 0.82 0.00 39.69 3.50
1741 1855 1.404035 ACACGTGCAAGGAAAGAAACC 59.596 47.619 17.22 0.00 0.00 3.27
1742 1856 2.844122 ACACGTGCAAGGAAAGAAAC 57.156 45.000 17.22 0.00 0.00 2.78
1775 1939 6.183360 GCGTTTAGATCTTTACTGAGGGAGTA 60.183 42.308 0.00 0.00 35.96 2.59
1776 1940 5.394333 GCGTTTAGATCTTTACTGAGGGAGT 60.394 44.000 0.00 0.00 38.88 3.85
1777 1941 5.044558 GCGTTTAGATCTTTACTGAGGGAG 58.955 45.833 0.00 0.00 0.00 4.30
1778 1942 4.710375 AGCGTTTAGATCTTTACTGAGGGA 59.290 41.667 0.00 0.00 0.00 4.20
1779 1943 5.012328 AGCGTTTAGATCTTTACTGAGGG 57.988 43.478 0.00 0.00 0.00 4.30
1780 1944 5.897050 AGAGCGTTTAGATCTTTACTGAGG 58.103 41.667 0.00 0.00 44.27 3.86
1792 1956 9.241317 CCGTAAAGAAATATAAGAGCGTTTAGA 57.759 33.333 0.00 0.00 0.00 2.10
1793 1957 9.241317 TCCGTAAAGAAATATAAGAGCGTTTAG 57.759 33.333 0.00 0.00 0.00 1.85
1794 1958 9.241317 CTCCGTAAAGAAATATAAGAGCGTTTA 57.759 33.333 0.00 0.00 0.00 2.01
1795 1959 7.224167 CCTCCGTAAAGAAATATAAGAGCGTTT 59.776 37.037 0.00 0.00 0.00 3.60
1796 1960 6.700520 CCTCCGTAAAGAAATATAAGAGCGTT 59.299 38.462 0.00 0.00 0.00 4.84
1797 1961 6.214399 CCTCCGTAAAGAAATATAAGAGCGT 58.786 40.000 0.00 0.00 0.00 5.07
1798 1962 5.634020 CCCTCCGTAAAGAAATATAAGAGCG 59.366 44.000 0.00 0.00 0.00 5.03
1799 1963 6.756221 TCCCTCCGTAAAGAAATATAAGAGC 58.244 40.000 0.00 0.00 0.00 4.09
1800 1964 7.953752 ACTCCCTCCGTAAAGAAATATAAGAG 58.046 38.462 0.00 0.00 0.00 2.85
1801 1965 7.909485 ACTCCCTCCGTAAAGAAATATAAGA 57.091 36.000 0.00 0.00 0.00 2.10
1802 1966 8.858094 AGTACTCCCTCCGTAAAGAAATATAAG 58.142 37.037 0.00 0.00 0.00 1.73
1803 1967 8.773033 AGTACTCCCTCCGTAAAGAAATATAA 57.227 34.615 0.00 0.00 0.00 0.98
1804 1968 8.773033 AAGTACTCCCTCCGTAAAGAAATATA 57.227 34.615 0.00 0.00 0.00 0.86
1805 1969 7.564292 AGAAGTACTCCCTCCGTAAAGAAATAT 59.436 37.037 0.00 0.00 0.00 1.28
1806 1970 6.894103 AGAAGTACTCCCTCCGTAAAGAAATA 59.106 38.462 0.00 0.00 0.00 1.40
1807 1971 5.720520 AGAAGTACTCCCTCCGTAAAGAAAT 59.279 40.000 0.00 0.00 0.00 2.17
1808 1972 5.082425 AGAAGTACTCCCTCCGTAAAGAAA 58.918 41.667 0.00 0.00 0.00 2.52
1809 1973 4.670765 AGAAGTACTCCCTCCGTAAAGAA 58.329 43.478 0.00 0.00 0.00 2.52
1810 1974 4.313020 AGAAGTACTCCCTCCGTAAAGA 57.687 45.455 0.00 0.00 0.00 2.52
1811 1975 5.402997 AAAGAAGTACTCCCTCCGTAAAG 57.597 43.478 0.00 0.00 0.00 1.85
1812 1976 5.813513 AAAAGAAGTACTCCCTCCGTAAA 57.186 39.130 0.00 0.00 0.00 2.01
1813 1977 5.813513 AAAAAGAAGTACTCCCTCCGTAA 57.186 39.130 0.00 0.00 0.00 3.18
1814 1978 6.494835 AGTTAAAAAGAAGTACTCCCTCCGTA 59.505 38.462 0.00 0.00 0.00 4.02
1815 1979 5.306419 AGTTAAAAAGAAGTACTCCCTCCGT 59.694 40.000 0.00 0.00 0.00 4.69
1816 1980 5.791666 AGTTAAAAAGAAGTACTCCCTCCG 58.208 41.667 0.00 0.00 0.00 4.63
1817 1981 6.766429 TGAGTTAAAAAGAAGTACTCCCTCC 58.234 40.000 0.00 0.00 35.51 4.30
1818 1982 8.850007 ATTGAGTTAAAAAGAAGTACTCCCTC 57.150 34.615 0.00 0.00 35.51 4.30
1819 1983 8.661345 AGATTGAGTTAAAAAGAAGTACTCCCT 58.339 33.333 0.00 0.00 35.51 4.20
1820 1984 8.850007 AGATTGAGTTAAAAAGAAGTACTCCC 57.150 34.615 0.00 0.00 35.51 4.30
1823 1987 9.628500 ACCAAGATTGAGTTAAAAAGAAGTACT 57.372 29.630 0.00 0.00 0.00 2.73
1874 2038 7.675619 ACTTTCCAATCCAAATTTCCTCTGTAT 59.324 33.333 0.00 0.00 0.00 2.29
1891 2055 8.416329 CCTTATATAGCTTTGCAACTTTCCAAT 58.584 33.333 0.00 0.00 0.00 3.16
1943 2109 4.397420 TCTGCTTAGGACTCAAATTTGCA 58.603 39.130 13.54 3.79 0.00 4.08
1944 2110 5.124457 TGATCTGCTTAGGACTCAAATTTGC 59.876 40.000 13.54 0.00 0.00 3.68
1947 2113 6.897986 AGATGATCTGCTTAGGACTCAAATT 58.102 36.000 0.00 0.00 0.00 1.82
1960 2126 9.678260 AGTTACAATTAGAAAAGATGATCTGCT 57.322 29.630 0.00 0.00 0.00 4.24
2038 2234 6.496743 TCTTCCAAGATTTGAATGGGAGATT 58.503 36.000 0.00 0.00 42.66 2.40
2044 2240 6.985117 TCAAACTCTTCCAAGATTTGAATGG 58.015 36.000 16.36 0.00 38.31 3.16
2155 2351 5.494632 TGTTAGCAGCATGAGAAATGATG 57.505 39.130 0.00 0.00 39.69 3.07
2290 2486 6.825944 TGATACTGACTGATGATACTAGCC 57.174 41.667 0.00 0.00 0.00 3.93
2402 2598 2.643551 TGCTTTGTAGGCTATCTTGGC 58.356 47.619 0.00 0.33 0.00 4.52
2435 2631 1.404391 GATTGCAGTCCTTCCAGCATG 59.596 52.381 0.00 0.00 36.80 4.06
2436 2632 1.684248 GGATTGCAGTCCTTCCAGCAT 60.684 52.381 20.38 0.00 36.80 3.79
2462 2658 5.575606 CCATTTCATTCACTTGCATCAAGAC 59.424 40.000 12.89 0.00 43.42 3.01
2464 2660 5.716094 TCCATTTCATTCACTTGCATCAAG 58.284 37.500 5.13 5.13 45.85 3.02
2494 2690 4.323417 GGTTCACATGGACAACATAGACA 58.677 43.478 0.00 0.00 37.84 3.41
2542 2738 1.091537 TCCCTAAAGATTTTGCGGCG 58.908 50.000 0.51 0.51 0.00 6.46
2568 2764 4.592485 GCTATCCATACATAGCCGCTAT 57.408 45.455 7.11 7.11 43.86 2.97
2621 2817 1.089112 TCAGAATCAACATGCGCAGG 58.911 50.000 22.13 22.13 0.00 4.85
2651 2847 3.323979 AGAGTAATAACCCCCTGCGTATG 59.676 47.826 0.00 0.00 0.00 2.39
2653 2849 2.961062 GAGAGTAATAACCCCCTGCGTA 59.039 50.000 0.00 0.00 0.00 4.42
2656 2852 1.070289 CGGAGAGTAATAACCCCCTGC 59.930 57.143 0.00 0.00 0.00 4.85
2748 2944 0.038159 AGAACTGAAGCTCGAACGGG 60.038 55.000 0.00 0.00 0.00 5.28
2848 3044 4.571580 TGCAGATTTTGGTTTGCAGAAAAG 59.428 37.500 0.00 0.00 41.23 2.27
2867 3063 5.008118 GGCTACTTCCTTTTATAGCTTGCAG 59.992 44.000 0.00 0.00 39.98 4.41
2999 3195 2.954792 AGCTGGATGGATCAAATTCCC 58.045 47.619 0.00 0.00 34.67 3.97
3065 3261 5.300286 AGAGACCAGAAAAGTTTGACCAATG 59.700 40.000 0.00 0.00 0.00 2.82
3122 3318 3.901222 TCATTGGTTGTAGAGTCCAGTGA 59.099 43.478 4.90 4.90 42.61 3.41
3128 3324 5.049818 GCTGCATATCATTGGTTGTAGAGTC 60.050 44.000 0.00 0.00 0.00 3.36
3148 3344 2.812591 CCAGATAACATCATGGAGCTGC 59.187 50.000 0.00 0.00 32.66 5.25
3235 3431 0.319211 TTGTACGCAGAGGAACACCG 60.319 55.000 0.00 0.00 0.00 4.94
3238 3434 0.679505 AGCTTGTACGCAGAGGAACA 59.320 50.000 0.00 0.00 0.00 3.18
3241 3437 1.541379 TGTAGCTTGTACGCAGAGGA 58.459 50.000 0.00 0.00 0.00 3.71
3268 3464 2.009108 CCCATCGTCTTGCATCACG 58.991 57.895 10.86 10.86 37.36 4.35
3352 3548 3.902881 AAAACAAAACTGCATCCCACA 57.097 38.095 0.00 0.00 0.00 4.17
3363 3559 9.103861 TCAAACCATCTCCAAATAAAACAAAAC 57.896 29.630 0.00 0.00 0.00 2.43
3385 3581 5.049680 GTCACTGTAGCTCGGATTTTTCAAA 60.050 40.000 0.00 0.00 0.00 2.69
3386 3582 4.451096 GTCACTGTAGCTCGGATTTTTCAA 59.549 41.667 0.00 0.00 0.00 2.69
3441 3637 6.356186 TCAGACTCAATGATATGGAGATGG 57.644 41.667 0.37 0.00 33.00 3.51
3503 3699 7.979537 GTGGTACCAAAAGAGAAGAACAAAATT 59.020 33.333 18.31 0.00 0.00 1.82
3517 3713 6.053005 TCAAAGTACTGAGTGGTACCAAAAG 58.947 40.000 18.31 16.25 41.93 2.27
3599 3795 5.150715 AGACCTGATTCTGTATATGGCTGA 58.849 41.667 0.00 0.00 0.00 4.26
3649 3845 0.539438 AGCCCAAGCGTTTGATCCAA 60.539 50.000 14.10 0.00 46.67 3.53
3652 3848 2.438868 AAAAGCCCAAGCGTTTGATC 57.561 45.000 14.10 4.60 46.83 2.92
4124 4322 2.027561 CCCCGATGTTAACTCCTGAACA 60.028 50.000 7.22 0.00 39.74 3.18
4130 4328 4.820173 CCTTTTATCCCCGATGTTAACTCC 59.180 45.833 7.22 0.00 0.00 3.85
4134 4332 5.703730 AGACCTTTTATCCCCGATGTTAA 57.296 39.130 0.00 0.00 0.00 2.01
4142 4340 7.116736 TCAAACTATCAAGACCTTTTATCCCC 58.883 38.462 0.00 0.00 0.00 4.81
4163 4361 3.925379 TGCGCTTGAACTAGAGATCAAA 58.075 40.909 9.73 0.00 36.59 2.69
4181 4379 4.433186 TCCAACTTGATAACCAATTGCG 57.567 40.909 0.00 0.00 33.68 4.85
4244 4442 2.124695 GGCACCAGACGGGAATCC 60.125 66.667 0.00 0.00 41.15 3.01
4283 4481 1.268999 CCTAGCTCTAGTGCTCTTGCG 60.269 57.143 21.88 7.54 42.97 4.85
4307 4505 1.039068 CAGCAACACCACCATTTCCA 58.961 50.000 0.00 0.00 0.00 3.53
4343 4541 4.184629 ACAAGAAGATCTCAACGTATGGC 58.815 43.478 0.00 0.00 0.00 4.40
4362 4560 8.332464 CGTCTTGAATTTACAGTACTTTGACAA 58.668 33.333 0.00 0.00 0.00 3.18
4370 4568 4.325472 CCGACCGTCTTGAATTTACAGTAC 59.675 45.833 0.00 0.00 0.00 2.73
4391 4589 2.425668 ACCTTTTGTGAAAACCTGACCG 59.574 45.455 0.00 0.00 0.00 4.79
4410 4608 3.382083 ACTTACAAATCCCCATCCACC 57.618 47.619 0.00 0.00 0.00 4.61
4412 4610 9.722317 ATTAATTAACTTACAAATCCCCATCCA 57.278 29.630 0.00 0.00 0.00 3.41
4471 4669 9.521503 GAATAAAAGCCAGTTATTTGATCCTTC 57.478 33.333 0.00 0.00 32.56 3.46
4473 4671 8.829373 AGAATAAAAGCCAGTTATTTGATCCT 57.171 30.769 0.00 0.00 32.56 3.24
4474 4672 8.138074 GGAGAATAAAAGCCAGTTATTTGATCC 58.862 37.037 0.00 0.00 32.56 3.36
4512 4716 6.512415 GCCTGCAGCAGAAAATAGTACAATAG 60.512 42.308 24.90 1.92 42.97 1.73
4514 4718 4.096984 GCCTGCAGCAGAAAATAGTACAAT 59.903 41.667 24.90 0.00 42.97 2.71
4565 4769 1.079503 GGATTGCTGTCGACAAGTCC 58.920 55.000 20.49 16.71 0.00 3.85
4642 4846 5.954153 ATCATCTGACTCACATCCTTTCT 57.046 39.130 0.00 0.00 0.00 2.52
4669 4873 1.416401 TCAAGGAGTTTGAACCGAGCT 59.584 47.619 0.00 0.00 42.69 4.09
4690 4894 1.763770 CCCCAGAAGCTTGACAGGT 59.236 57.895 2.10 0.00 0.00 4.00
4712 4916 0.179113 CAAGGCCACACACCACAAAC 60.179 55.000 5.01 0.00 0.00 2.93
4718 4922 2.202395 ACATGCAAGGCCACACACC 61.202 57.895 5.01 0.00 0.00 4.16
4738 4942 4.948621 AGAAGAAAATCAGGAGAGCAATGG 59.051 41.667 0.00 0.00 0.00 3.16
4806 5010 1.623081 TTCACGATCGCCGCTTCAAC 61.623 55.000 16.60 0.00 43.32 3.18
4956 5160 1.581934 TACAGCGGCAATGTAGATGC 58.418 50.000 1.45 0.00 43.08 3.91
4977 5181 2.222819 GCAGCAGCAATGTACGTAAGTC 60.223 50.000 0.00 0.00 45.53 3.01
4990 5194 3.369787 ACTATGTTAGTCATGCAGCAGCA 60.370 43.478 6.14 6.14 45.65 4.41
5013 5217 1.154654 CCGCGCGTTGTTCTTTCTC 60.155 57.895 29.95 0.00 0.00 2.87
5036 5240 1.954528 CTGCCACTTCAACTGCAGG 59.045 57.895 19.93 0.36 45.69 4.85
5042 5246 1.808411 TCGGAATCTGCCACTTCAAC 58.192 50.000 0.00 0.00 0.00 3.18
5091 5295 3.057174 AGCAAACGGAACACAAGAAAACA 60.057 39.130 0.00 0.00 0.00 2.83
5107 5311 1.032014 TTTCCACAGCCAGAGCAAAC 58.968 50.000 0.00 0.00 43.56 2.93
5157 5361 5.982516 TGGCAACATGTTTCAGTGAAAATAC 59.017 36.000 19.63 9.35 46.17 1.89
5178 5385 1.909700 TCTCCCATCAACAAGTTGGC 58.090 50.000 12.54 0.00 40.78 4.52
5188 5395 1.571955 TGCTGCTACTTCTCCCATCA 58.428 50.000 0.00 0.00 0.00 3.07
5486 5827 3.694072 TGCTGGGATGTAAAAGATTTCGG 59.306 43.478 0.00 0.00 0.00 4.30
5520 5864 7.500992 AGGAGAATGTTAATTAAGCTCGATGA 58.499 34.615 0.00 0.00 0.00 2.92
5550 5894 6.395426 TTTTGAGATGTCAATTCTGCAGTT 57.605 33.333 14.67 0.00 42.41 3.16
5562 5906 9.248291 TGTTAAAATTGCTCTTTTTGAGATGTC 57.752 29.630 2.83 0.00 45.39 3.06
5635 5979 2.045131 CAGCAAGCAAGGGAGAGCC 61.045 63.158 0.00 0.00 0.00 4.70
5670 6018 4.943705 GGAGAATCAGCAAGTACAATTCCA 59.056 41.667 0.00 0.00 36.25 3.53
5677 6025 2.286294 CGCATGGAGAATCAGCAAGTAC 59.714 50.000 0.00 0.00 36.25 2.73
5783 6205 5.274822 ACTGGGACCATCAATGAATCAAAT 58.725 37.500 0.00 0.00 0.00 2.32
5787 6209 6.966534 ATTAACTGGGACCATCAATGAATC 57.033 37.500 0.00 0.00 0.00 2.52
5789 6211 7.893302 ACTTAATTAACTGGGACCATCAATGAA 59.107 33.333 0.00 0.00 0.00 2.57
5791 6213 7.645058 ACTTAATTAACTGGGACCATCAATG 57.355 36.000 0.00 0.00 0.00 2.82
5792 6214 8.531146 CAAACTTAATTAACTGGGACCATCAAT 58.469 33.333 0.00 0.00 0.00 2.57
5793 6215 7.726291 TCAAACTTAATTAACTGGGACCATCAA 59.274 33.333 0.00 0.00 0.00 2.57
5794 6216 7.235079 TCAAACTTAATTAACTGGGACCATCA 58.765 34.615 0.00 0.00 0.00 3.07
5795 6217 7.696992 TCAAACTTAATTAACTGGGACCATC 57.303 36.000 0.00 0.00 0.00 3.51
5796 6218 8.531146 CAATCAAACTTAATTAACTGGGACCAT 58.469 33.333 0.00 0.00 0.00 3.55
5797 6219 7.524698 GCAATCAAACTTAATTAACTGGGACCA 60.525 37.037 0.00 0.00 0.00 4.02
5798 6220 6.811665 GCAATCAAACTTAATTAACTGGGACC 59.188 38.462 0.00 0.00 0.00 4.46
5799 6221 6.811665 GGCAATCAAACTTAATTAACTGGGAC 59.188 38.462 0.00 0.00 0.00 4.46
5800 6222 6.071051 GGGCAATCAAACTTAATTAACTGGGA 60.071 38.462 0.00 0.00 0.00 4.37
5801 6223 6.106003 GGGCAATCAAACTTAATTAACTGGG 58.894 40.000 0.00 0.00 0.00 4.45
5802 6224 6.696411 TGGGCAATCAAACTTAATTAACTGG 58.304 36.000 0.00 0.00 0.00 4.00
5804 6226 6.723977 TCCTGGGCAATCAAACTTAATTAACT 59.276 34.615 0.00 0.00 0.00 2.24
5805 6227 6.930731 TCCTGGGCAATCAAACTTAATTAAC 58.069 36.000 0.00 0.00 0.00 2.01
5806 6228 7.732222 ATCCTGGGCAATCAAACTTAATTAA 57.268 32.000 0.00 0.00 0.00 1.40
5807 6229 7.286775 GGTATCCTGGGCAATCAAACTTAATTA 59.713 37.037 0.00 0.00 0.00 1.40
5808 6230 6.098266 GGTATCCTGGGCAATCAAACTTAATT 59.902 38.462 0.00 0.00 0.00 1.40
5809 6231 5.598417 GGTATCCTGGGCAATCAAACTTAAT 59.402 40.000 0.00 0.00 0.00 1.40
5825 6247 3.260380 CAGGAGCAGATTAGGGTATCCTG 59.740 52.174 4.22 4.11 44.61 3.86
5826 6248 3.142977 TCAGGAGCAGATTAGGGTATCCT 59.857 47.826 0.00 0.00 46.96 3.24
5827 6249 3.259625 GTCAGGAGCAGATTAGGGTATCC 59.740 52.174 0.00 0.00 0.00 2.59
5828 6250 4.021544 CAGTCAGGAGCAGATTAGGGTATC 60.022 50.000 0.00 0.00 0.00 2.24
5829 6251 3.900601 CAGTCAGGAGCAGATTAGGGTAT 59.099 47.826 0.00 0.00 0.00 2.73
5830 6252 3.300388 CAGTCAGGAGCAGATTAGGGTA 58.700 50.000 0.00 0.00 0.00 3.69
5831 6253 2.114616 CAGTCAGGAGCAGATTAGGGT 58.885 52.381 0.00 0.00 0.00 4.34
5832 6254 1.202627 GCAGTCAGGAGCAGATTAGGG 60.203 57.143 0.00 0.00 0.00 3.53
5833 6255 1.483827 TGCAGTCAGGAGCAGATTAGG 59.516 52.381 0.00 0.00 35.51 2.69
5834 6256 2.935201 GTTGCAGTCAGGAGCAGATTAG 59.065 50.000 0.00 0.00 42.39 1.73
5847 6269 2.622942 TCACCTGAATTTGGTTGCAGTC 59.377 45.455 1.86 0.00 35.28 3.51
5867 6295 5.144359 GTGATTTGTTGATGTACCAACGTC 58.856 41.667 9.51 8.30 46.89 4.34
5870 6298 4.522789 AGGGTGATTTGTTGATGTACCAAC 59.477 41.667 7.76 7.76 44.84 3.77
5873 6301 4.589908 AGAGGGTGATTTGTTGATGTACC 58.410 43.478 0.00 0.00 0.00 3.34
5915 6343 3.223589 GCGGTTGGTTGGTGCCTT 61.224 61.111 0.00 0.00 0.00 4.35
5931 6359 2.099756 GCATACCCTCCAATCAACAAGC 59.900 50.000 0.00 0.00 0.00 4.01
5943 6371 1.378531 TGAAATGCACGCATACCCTC 58.621 50.000 4.68 1.37 35.31 4.30
5949 6377 2.098607 CCTCTTGATGAAATGCACGCAT 59.901 45.455 0.00 0.00 38.46 4.73
5950 6378 1.469703 CCTCTTGATGAAATGCACGCA 59.530 47.619 0.00 0.00 0.00 5.24
5951 6379 1.470098 ACCTCTTGATGAAATGCACGC 59.530 47.619 0.00 0.00 0.00 5.34
5952 6380 2.159476 CCACCTCTTGATGAAATGCACG 60.159 50.000 0.00 0.00 0.00 5.34
5953 6381 3.084039 TCCACCTCTTGATGAAATGCAC 58.916 45.455 0.00 0.00 0.00 4.57
5954 6382 3.438216 TCCACCTCTTGATGAAATGCA 57.562 42.857 0.00 0.00 0.00 3.96
5955 6383 4.996788 AATCCACCTCTTGATGAAATGC 57.003 40.909 0.00 0.00 0.00 3.56


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.