Multiple sequence alignment - TraesCS2A01G219800

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS2A01G219800 chr2A 100.000 2098 0 0 482 2579 207487292 207489389 0.000000e+00 3875.0
1 TraesCS2A01G219800 chr2A 100.000 248 0 0 1 248 207486811 207487058 2.340000e-125 459.0
2 TraesCS2A01G219800 chr2A 82.828 99 17 0 2472 2570 319053450 319053548 3.530000e-14 89.8
3 TraesCS2A01G219800 chr2D 87.688 1933 142 45 677 2579 193338176 193340042 0.000000e+00 2163.0
4 TraesCS2A01G219800 chr2D 86.916 214 27 1 1 213 619420859 619420646 3.320000e-59 239.0
5 TraesCS2A01G219800 chr2D 84.507 213 29 3 1 210 552116000 552116211 9.350000e-50 207.0
6 TraesCS2A01G219800 chr2D 81.967 244 37 6 1 238 33326759 33326517 1.570000e-47 200.0
7 TraesCS2A01G219800 chr2D 84.615 78 10 2 2472 2548 272993274 272993198 2.750000e-10 76.8
8 TraesCS2A01G219800 chr2D 100.000 28 0 0 560 587 351027457 351027430 5.000000e-03 52.8
9 TraesCS2A01G219800 chr2D 100.000 28 0 0 560 587 508189066 508189039 5.000000e-03 52.8
10 TraesCS2A01G219800 chr2B 84.365 1938 164 73 677 2579 249457716 249459549 0.000000e+00 1772.0
11 TraesCS2A01G219800 chr2B 100.000 28 0 0 560 587 521940038 521940011 5.000000e-03 52.8
12 TraesCS2A01G219800 chr7D 85.849 212 30 0 2 213 57701259 57701470 2.580000e-55 226.0
13 TraesCS2A01G219800 chr7D 85.577 208 27 3 8 213 552927576 552927782 5.590000e-52 215.0
14 TraesCS2A01G219800 chr5B 83.673 245 33 5 1 239 401001161 401000918 9.290000e-55 224.0
15 TraesCS2A01G219800 chr5B 84.579 214 31 2 1 213 271098379 271098591 7.230000e-51 211.0
16 TraesCS2A01G219800 chr6D 85.437 206 27 3 1 204 350560307 350560511 7.230000e-51 211.0
17 TraesCS2A01G219800 chr6D 100.000 28 0 0 560 587 345386573 345386600 5.000000e-03 52.8
18 TraesCS2A01G219800 chr6B 84.507 213 28 4 1 212 512253289 512253081 3.360000e-49 206.0
19 TraesCS2A01G219800 chr6B 100.000 28 0 0 560 587 140676107 140676080 5.000000e-03 52.8
20 TraesCS2A01G219800 chr5D 79.661 118 20 4 2010 2124 340763348 340763232 5.910000e-12 82.4
21 TraesCS2A01G219800 chr5D 100.000 29 0 0 560 588 472634506 472634534 1.000000e-03 54.7


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS2A01G219800 chr2A 207486811 207489389 2578 False 2167 3875 100.000 1 2579 2 chr2A.!!$F2 2578
1 TraesCS2A01G219800 chr2D 193338176 193340042 1866 False 2163 2163 87.688 677 2579 1 chr2D.!!$F1 1902
2 TraesCS2A01G219800 chr2B 249457716 249459549 1833 False 1772 1772 84.365 677 2579 1 chr2B.!!$F1 1902

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
163 164 0.107214 TCGGAGGATGGATTTGGTGC 60.107 55.0 0.0 0.0 0.0 5.01 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2047 2113 0.032117 AAGGCCCCCTATTTGCTTCC 60.032 55.0 0.0 0.0 31.13 3.46 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
17 18 3.213402 GGCGAGGACGGGAGAGAG 61.213 72.222 0.00 0.00 40.15 3.20
18 19 3.213402 GCGAGGACGGGAGAGAGG 61.213 72.222 0.00 0.00 40.15 3.69
19 20 2.590645 CGAGGACGGGAGAGAGGA 59.409 66.667 0.00 0.00 35.72 3.71
20 21 1.820481 CGAGGACGGGAGAGAGGAC 60.820 68.421 0.00 0.00 35.72 3.85
21 22 1.610873 GAGGACGGGAGAGAGGACT 59.389 63.158 0.00 0.00 0.00 3.85
22 23 0.750182 GAGGACGGGAGAGAGGACTG 60.750 65.000 0.00 0.00 0.00 3.51
23 24 2.419739 GGACGGGAGAGAGGACTGC 61.420 68.421 0.00 0.00 0.00 4.40
24 25 1.379309 GACGGGAGAGAGGACTGCT 60.379 63.158 0.00 0.00 0.00 4.24
25 26 1.379309 ACGGGAGAGAGGACTGCTC 60.379 63.158 0.00 0.00 0.00 4.26
26 27 1.077068 CGGGAGAGAGGACTGCTCT 60.077 63.158 0.00 0.00 44.98 4.09
27 28 1.383456 CGGGAGAGAGGACTGCTCTG 61.383 65.000 4.55 0.00 42.50 3.35
28 29 1.675720 GGGAGAGAGGACTGCTCTGC 61.676 65.000 4.55 0.00 46.32 4.26
29 30 0.684153 GGAGAGAGGACTGCTCTGCT 60.684 60.000 4.55 2.44 44.45 4.24
30 31 0.457035 GAGAGAGGACTGCTCTGCTG 59.543 60.000 4.55 0.00 42.50 4.41
31 32 0.971959 AGAGAGGACTGCTCTGCTGG 60.972 60.000 4.55 0.00 41.00 4.85
32 33 0.969917 GAGAGGACTGCTCTGCTGGA 60.970 60.000 4.55 0.00 0.00 3.86
33 34 0.971959 AGAGGACTGCTCTGCTGGAG 60.972 60.000 0.00 3.48 44.49 3.86
52 53 2.031012 TGTCCGCACAGAGGCAAG 59.969 61.111 0.00 0.00 0.00 4.01
53 54 2.743928 GTCCGCACAGAGGCAAGG 60.744 66.667 0.00 0.00 0.00 3.61
54 55 2.922503 TCCGCACAGAGGCAAGGA 60.923 61.111 0.00 0.00 0.00 3.36
55 56 2.032528 CCGCACAGAGGCAAGGAA 59.967 61.111 0.00 0.00 0.00 3.36
56 57 2.328099 CCGCACAGAGGCAAGGAAC 61.328 63.158 0.00 0.00 0.00 3.62
57 58 2.671177 CGCACAGAGGCAAGGAACG 61.671 63.158 0.00 0.00 0.00 3.95
58 59 2.328099 GCACAGAGGCAAGGAACGG 61.328 63.158 0.00 0.00 0.00 4.44
59 60 2.032681 ACAGAGGCAAGGAACGGC 59.967 61.111 0.00 0.00 0.00 5.68
60 61 2.348998 CAGAGGCAAGGAACGGCT 59.651 61.111 0.00 0.00 42.85 5.52
61 62 2.037136 CAGAGGCAAGGAACGGCTG 61.037 63.158 0.00 0.00 39.76 4.85
62 63 2.032681 GAGGCAAGGAACGGCTGT 59.967 61.111 0.00 0.00 39.76 4.40
63 64 1.600916 GAGGCAAGGAACGGCTGTT 60.601 57.895 11.62 11.62 39.76 3.16
64 65 1.856265 GAGGCAAGGAACGGCTGTTG 61.856 60.000 17.49 2.75 39.76 3.33
65 66 1.896660 GGCAAGGAACGGCTGTTGA 60.897 57.895 17.49 0.00 38.78 3.18
66 67 1.576421 GCAAGGAACGGCTGTTGAG 59.424 57.895 17.49 3.71 38.78 3.02
67 68 1.576421 CAAGGAACGGCTGTTGAGC 59.424 57.895 17.49 0.76 45.40 4.26
101 102 3.110178 CTGCGAACCGGACGGAAC 61.110 66.667 18.80 9.47 38.96 3.62
121 122 2.131776 GGAGGACGAAGAAGAGAGGA 57.868 55.000 0.00 0.00 0.00 3.71
122 123 2.021457 GGAGGACGAAGAAGAGAGGAG 58.979 57.143 0.00 0.00 0.00 3.69
123 124 2.356330 GGAGGACGAAGAAGAGAGGAGA 60.356 54.545 0.00 0.00 0.00 3.71
124 125 2.943033 GAGGACGAAGAAGAGAGGAGAG 59.057 54.545 0.00 0.00 0.00 3.20
125 126 2.574369 AGGACGAAGAAGAGAGGAGAGA 59.426 50.000 0.00 0.00 0.00 3.10
126 127 2.943033 GGACGAAGAAGAGAGGAGAGAG 59.057 54.545 0.00 0.00 0.00 3.20
127 128 2.354821 GACGAAGAAGAGAGGAGAGAGC 59.645 54.545 0.00 0.00 0.00 4.09
128 129 2.290641 ACGAAGAAGAGAGGAGAGAGCA 60.291 50.000 0.00 0.00 0.00 4.26
129 130 2.752354 CGAAGAAGAGAGGAGAGAGCAA 59.248 50.000 0.00 0.00 0.00 3.91
130 131 3.192422 CGAAGAAGAGAGGAGAGAGCAAA 59.808 47.826 0.00 0.00 0.00 3.68
131 132 4.142182 CGAAGAAGAGAGGAGAGAGCAAAT 60.142 45.833 0.00 0.00 0.00 2.32
132 133 4.741321 AGAAGAGAGGAGAGAGCAAATG 57.259 45.455 0.00 0.00 0.00 2.32
133 134 3.451902 AGAAGAGAGGAGAGAGCAAATGG 59.548 47.826 0.00 0.00 0.00 3.16
134 135 3.113191 AGAGAGGAGAGAGCAAATGGA 57.887 47.619 0.00 0.00 0.00 3.41
135 136 3.656496 AGAGAGGAGAGAGCAAATGGAT 58.344 45.455 0.00 0.00 0.00 3.41
136 137 3.642848 AGAGAGGAGAGAGCAAATGGATC 59.357 47.826 0.00 0.00 0.00 3.36
137 138 2.705127 AGAGGAGAGAGCAAATGGATCC 59.295 50.000 4.20 4.20 30.22 3.36
138 139 1.415659 AGGAGAGAGCAAATGGATCCG 59.584 52.381 7.39 0.00 30.22 4.18
139 140 1.542108 GGAGAGAGCAAATGGATCCGG 60.542 57.143 7.39 0.00 30.22 5.14
140 141 0.179034 AGAGAGCAAATGGATCCGGC 60.179 55.000 7.39 8.28 30.22 6.13
141 142 0.464373 GAGAGCAAATGGATCCGGCA 60.464 55.000 16.60 0.00 30.22 5.69
142 143 0.465097 AGAGCAAATGGATCCGGCAG 60.465 55.000 16.60 5.28 30.22 4.85
143 144 2.068277 GAGCAAATGGATCCGGCAGC 62.068 60.000 16.60 13.53 0.00 5.25
144 145 2.123428 GCAAATGGATCCGGCAGCT 61.123 57.895 7.39 0.00 0.00 4.24
145 146 2.028130 CAAATGGATCCGGCAGCTC 58.972 57.895 7.39 0.00 0.00 4.09
146 147 1.524621 AAATGGATCCGGCAGCTCG 60.525 57.895 7.39 0.00 0.00 5.03
154 155 4.598894 CGGCAGCTCGGAGGATGG 62.599 72.222 7.20 0.00 0.00 3.51
155 156 3.157252 GGCAGCTCGGAGGATGGA 61.157 66.667 7.20 0.00 0.00 3.41
156 157 2.515071 GGCAGCTCGGAGGATGGAT 61.515 63.158 7.20 0.00 0.00 3.41
157 158 1.449353 GCAGCTCGGAGGATGGATT 59.551 57.895 7.20 0.00 0.00 3.01
158 159 0.179034 GCAGCTCGGAGGATGGATTT 60.179 55.000 7.20 0.00 0.00 2.17
159 160 1.590932 CAGCTCGGAGGATGGATTTG 58.409 55.000 7.20 0.00 0.00 2.32
160 161 0.471617 AGCTCGGAGGATGGATTTGG 59.528 55.000 7.20 0.00 0.00 3.28
161 162 0.181350 GCTCGGAGGATGGATTTGGT 59.819 55.000 7.20 0.00 0.00 3.67
162 163 1.959042 CTCGGAGGATGGATTTGGTG 58.041 55.000 0.00 0.00 0.00 4.17
163 164 0.107214 TCGGAGGATGGATTTGGTGC 60.107 55.000 0.00 0.00 0.00 5.01
164 165 0.394216 CGGAGGATGGATTTGGTGCA 60.394 55.000 0.00 0.00 0.00 4.57
165 166 1.851304 GGAGGATGGATTTGGTGCAA 58.149 50.000 0.00 0.00 0.00 4.08
166 167 2.391678 GGAGGATGGATTTGGTGCAAT 58.608 47.619 0.00 0.00 0.00 3.56
167 168 2.767960 GGAGGATGGATTTGGTGCAATT 59.232 45.455 0.00 0.00 0.00 2.32
168 169 3.198417 GGAGGATGGATTTGGTGCAATTT 59.802 43.478 0.00 0.00 0.00 1.82
169 170 4.186159 GAGGATGGATTTGGTGCAATTTG 58.814 43.478 0.00 0.00 0.00 2.32
170 171 3.054948 AGGATGGATTTGGTGCAATTTGG 60.055 43.478 0.00 0.00 0.00 3.28
171 172 2.855209 TGGATTTGGTGCAATTTGGG 57.145 45.000 0.00 0.00 0.00 4.12
172 173 2.333069 TGGATTTGGTGCAATTTGGGA 58.667 42.857 0.00 0.00 0.00 4.37
173 174 2.911636 TGGATTTGGTGCAATTTGGGAT 59.088 40.909 0.00 0.00 0.00 3.85
174 175 3.272581 GGATTTGGTGCAATTTGGGATG 58.727 45.455 0.00 0.00 0.00 3.51
175 176 3.307621 GGATTTGGTGCAATTTGGGATGT 60.308 43.478 0.00 0.00 0.00 3.06
176 177 2.835580 TTGGTGCAATTTGGGATGTG 57.164 45.000 0.00 0.00 0.00 3.21
177 178 0.975135 TGGTGCAATTTGGGATGTGG 59.025 50.000 0.00 0.00 0.00 4.17
178 179 0.975887 GGTGCAATTTGGGATGTGGT 59.024 50.000 0.00 0.00 0.00 4.16
179 180 1.066929 GGTGCAATTTGGGATGTGGTC 60.067 52.381 0.00 0.00 0.00 4.02
180 181 0.887247 TGCAATTTGGGATGTGGTCG 59.113 50.000 0.00 0.00 0.00 4.79
181 182 0.173255 GCAATTTGGGATGTGGTCGG 59.827 55.000 0.00 0.00 0.00 4.79
182 183 0.817013 CAATTTGGGATGTGGTCGGG 59.183 55.000 0.00 0.00 0.00 5.14
183 184 0.970427 AATTTGGGATGTGGTCGGGC 60.970 55.000 0.00 0.00 0.00 6.13
184 185 1.863155 ATTTGGGATGTGGTCGGGCT 61.863 55.000 0.00 0.00 0.00 5.19
185 186 2.762969 TTTGGGATGTGGTCGGGCTG 62.763 60.000 0.00 0.00 0.00 4.85
186 187 3.717294 GGGATGTGGTCGGGCTGT 61.717 66.667 0.00 0.00 0.00 4.40
187 188 2.125106 GGATGTGGTCGGGCTGTC 60.125 66.667 0.00 0.00 0.00 3.51
188 189 2.509336 GATGTGGTCGGGCTGTCG 60.509 66.667 0.00 0.00 0.00 4.35
189 190 4.082523 ATGTGGTCGGGCTGTCGG 62.083 66.667 0.00 0.00 0.00 4.79
191 192 3.771160 GTGGTCGGGCTGTCGGAT 61.771 66.667 0.00 0.00 0.00 4.18
192 193 3.458163 TGGTCGGGCTGTCGGATC 61.458 66.667 0.00 0.00 0.00 3.36
193 194 4.222847 GGTCGGGCTGTCGGATCC 62.223 72.222 0.00 0.00 0.00 3.36
194 195 4.570663 GTCGGGCTGTCGGATCCG 62.571 72.222 28.62 28.62 43.42 4.18
222 223 4.141144 CGTGCCCGCCTCATATTT 57.859 55.556 0.00 0.00 0.00 1.40
223 224 3.299050 CGTGCCCGCCTCATATTTA 57.701 52.632 0.00 0.00 0.00 1.40
224 225 1.148310 CGTGCCCGCCTCATATTTAG 58.852 55.000 0.00 0.00 0.00 1.85
225 226 1.523758 GTGCCCGCCTCATATTTAGG 58.476 55.000 0.00 0.00 37.17 2.69
236 237 5.738909 CCTCATATTTAGGCTAGACATGGG 58.261 45.833 0.00 0.22 0.00 4.00
237 238 5.338708 CCTCATATTTAGGCTAGACATGGGG 60.339 48.000 7.76 7.76 0.00 4.96
238 239 5.162637 TCATATTTAGGCTAGACATGGGGT 58.837 41.667 0.00 0.00 0.00 4.95
239 240 6.327781 TCATATTTAGGCTAGACATGGGGTA 58.672 40.000 0.00 0.00 0.00 3.69
240 241 4.976540 ATTTAGGCTAGACATGGGGTAC 57.023 45.455 0.00 0.00 0.00 3.34
516 517 4.795970 AAAAACGTGATCAGACAGTGAC 57.204 40.909 0.00 0.00 38.28 3.67
517 518 2.440539 AACGTGATCAGACAGTGACC 57.559 50.000 0.00 0.00 38.28 4.02
518 519 0.241213 ACGTGATCAGACAGTGACCG 59.759 55.000 0.00 0.00 38.28 4.79
519 520 0.456824 CGTGATCAGACAGTGACCGG 60.457 60.000 0.00 0.00 38.28 5.28
520 521 0.108615 GTGATCAGACAGTGACCGGG 60.109 60.000 6.32 0.00 38.28 5.73
521 522 1.153549 GATCAGACAGTGACCGGGC 60.154 63.158 6.32 1.57 38.28 6.13
522 523 2.890847 GATCAGACAGTGACCGGGCG 62.891 65.000 6.32 0.00 38.28 6.13
523 524 4.742201 CAGACAGTGACCGGGCGG 62.742 72.222 6.32 0.00 42.03 6.13
542 543 4.508128 CGCCCGCACGTATGAGGT 62.508 66.667 0.00 0.00 43.95 3.85
543 544 2.585247 GCCCGCACGTATGAGGTC 60.585 66.667 0.00 0.00 43.95 3.85
544 545 2.278596 CCCGCACGTATGAGGTCG 60.279 66.667 0.00 0.00 43.95 4.79
545 546 2.278596 CCGCACGTATGAGGTCGG 60.279 66.667 0.00 0.00 40.73 4.79
546 547 2.488355 CGCACGTATGAGGTCGGT 59.512 61.111 0.00 0.00 0.00 4.69
547 548 1.153901 CGCACGTATGAGGTCGGTT 60.154 57.895 0.00 0.00 0.00 4.44
548 549 0.734942 CGCACGTATGAGGTCGGTTT 60.735 55.000 0.00 0.00 0.00 3.27
549 550 0.719465 GCACGTATGAGGTCGGTTTG 59.281 55.000 0.00 0.00 0.00 2.93
550 551 1.670674 GCACGTATGAGGTCGGTTTGA 60.671 52.381 0.00 0.00 0.00 2.69
551 552 2.259618 CACGTATGAGGTCGGTTTGAG 58.740 52.381 0.00 0.00 0.00 3.02
552 553 1.203994 ACGTATGAGGTCGGTTTGAGG 59.796 52.381 0.00 0.00 0.00 3.86
553 554 1.475280 CGTATGAGGTCGGTTTGAGGA 59.525 52.381 0.00 0.00 0.00 3.71
554 555 2.094390 CGTATGAGGTCGGTTTGAGGAA 60.094 50.000 0.00 0.00 0.00 3.36
555 556 2.770164 ATGAGGTCGGTTTGAGGAAG 57.230 50.000 0.00 0.00 0.00 3.46
556 557 1.420430 TGAGGTCGGTTTGAGGAAGT 58.580 50.000 0.00 0.00 0.00 3.01
557 558 1.343465 TGAGGTCGGTTTGAGGAAGTC 59.657 52.381 0.00 0.00 0.00 3.01
558 559 1.343465 GAGGTCGGTTTGAGGAAGTCA 59.657 52.381 0.00 0.00 0.00 3.41
559 560 1.344763 AGGTCGGTTTGAGGAAGTCAG 59.655 52.381 0.00 0.00 36.21 3.51
560 561 1.070289 GGTCGGTTTGAGGAAGTCAGT 59.930 52.381 0.00 0.00 36.21 3.41
561 562 2.484947 GGTCGGTTTGAGGAAGTCAGTT 60.485 50.000 0.00 0.00 36.21 3.16
562 563 3.203716 GTCGGTTTGAGGAAGTCAGTTT 58.796 45.455 0.00 0.00 36.21 2.66
563 564 3.002348 GTCGGTTTGAGGAAGTCAGTTTG 59.998 47.826 0.00 0.00 36.21 2.93
564 565 3.118555 TCGGTTTGAGGAAGTCAGTTTGA 60.119 43.478 0.00 0.00 36.21 2.69
565 566 3.248602 CGGTTTGAGGAAGTCAGTTTGAG 59.751 47.826 0.00 0.00 36.21 3.02
566 567 3.565902 GGTTTGAGGAAGTCAGTTTGAGG 59.434 47.826 0.00 0.00 36.21 3.86
567 568 2.550830 TGAGGAAGTCAGTTTGAGGC 57.449 50.000 0.00 0.00 0.00 4.70
568 569 1.270305 TGAGGAAGTCAGTTTGAGGCG 60.270 52.381 0.00 0.00 0.00 5.52
569 570 0.759346 AGGAAGTCAGTTTGAGGCGT 59.241 50.000 0.00 0.00 0.00 5.68
570 571 1.149148 GGAAGTCAGTTTGAGGCGTC 58.851 55.000 0.00 0.00 0.00 5.19
571 572 1.149148 GAAGTCAGTTTGAGGCGTCC 58.851 55.000 3.56 0.00 0.00 4.79
572 573 0.600255 AAGTCAGTTTGAGGCGTCCG 60.600 55.000 3.56 0.00 0.00 4.79
573 574 1.006571 GTCAGTTTGAGGCGTCCGA 60.007 57.895 3.56 0.00 0.00 4.55
574 575 1.006571 TCAGTTTGAGGCGTCCGAC 60.007 57.895 3.56 2.74 0.00 4.79
575 576 1.006102 CAGTTTGAGGCGTCCGACT 60.006 57.895 3.56 0.00 35.26 4.18
576 577 0.242825 CAGTTTGAGGCGTCCGACTA 59.757 55.000 3.56 0.00 30.74 2.59
577 578 1.135083 CAGTTTGAGGCGTCCGACTAT 60.135 52.381 3.56 0.00 30.74 2.12
578 579 2.098607 CAGTTTGAGGCGTCCGACTATA 59.901 50.000 3.56 0.00 30.74 1.31
579 580 2.358267 AGTTTGAGGCGTCCGACTATAG 59.642 50.000 3.56 0.00 30.74 1.31
580 581 2.336945 TTGAGGCGTCCGACTATAGA 57.663 50.000 6.78 0.00 30.74 1.98
581 582 2.563261 TGAGGCGTCCGACTATAGAT 57.437 50.000 6.78 0.00 30.74 1.98
582 583 2.152016 TGAGGCGTCCGACTATAGATG 58.848 52.381 6.78 0.00 30.74 2.90
583 584 0.882474 AGGCGTCCGACTATAGATGC 59.118 55.000 6.78 0.98 42.99 3.91
584 585 0.882474 GGCGTCCGACTATAGATGCT 59.118 55.000 6.78 0.00 43.21 3.79
585 586 1.135632 GGCGTCCGACTATAGATGCTC 60.136 57.143 6.78 0.00 43.21 4.26
586 587 1.807742 GCGTCCGACTATAGATGCTCT 59.192 52.381 6.78 0.00 40.99 4.09
587 588 2.159626 GCGTCCGACTATAGATGCTCTC 60.160 54.545 6.78 0.00 40.99 3.20
588 589 2.092995 CGTCCGACTATAGATGCTCTCG 59.907 54.545 6.78 4.02 0.00 4.04
589 590 3.068560 GTCCGACTATAGATGCTCTCGT 58.931 50.000 6.78 0.00 0.00 4.18
590 591 4.244066 GTCCGACTATAGATGCTCTCGTA 58.756 47.826 6.78 0.00 0.00 3.43
591 592 4.327898 GTCCGACTATAGATGCTCTCGTAG 59.672 50.000 6.78 0.00 0.00 3.51
592 593 4.021280 TCCGACTATAGATGCTCTCGTAGT 60.021 45.833 6.78 9.10 33.51 2.73
593 594 4.691685 CCGACTATAGATGCTCTCGTAGTT 59.308 45.833 6.78 0.00 32.03 2.24
594 595 5.179742 CCGACTATAGATGCTCTCGTAGTTT 59.820 44.000 6.78 0.00 32.03 2.66
595 596 6.293516 CCGACTATAGATGCTCTCGTAGTTTT 60.294 42.308 6.78 0.00 32.03 2.43
596 597 7.095313 CCGACTATAGATGCTCTCGTAGTTTTA 60.095 40.741 6.78 0.00 32.03 1.52
597 598 8.281194 CGACTATAGATGCTCTCGTAGTTTTAA 58.719 37.037 6.78 0.00 32.03 1.52
598 599 9.601971 GACTATAGATGCTCTCGTAGTTTTAAG 57.398 37.037 6.78 0.00 32.03 1.85
599 600 9.339850 ACTATAGATGCTCTCGTAGTTTTAAGA 57.660 33.333 6.78 0.00 29.35 2.10
604 605 9.303537 AGATGCTCTCGTAGTTTTAAGATTTAC 57.696 33.333 0.00 0.00 0.00 2.01
605 606 7.502177 TGCTCTCGTAGTTTTAAGATTTACG 57.498 36.000 6.67 6.67 38.65 3.18
606 607 7.086376 TGCTCTCGTAGTTTTAAGATTTACGT 58.914 34.615 0.00 0.00 38.48 3.57
607 608 8.236586 TGCTCTCGTAGTTTTAAGATTTACGTA 58.763 33.333 0.00 0.00 38.48 3.57
608 609 8.519459 GCTCTCGTAGTTTTAAGATTTACGTAC 58.481 37.037 0.00 0.00 38.48 3.67
609 610 8.587627 TCTCGTAGTTTTAAGATTTACGTACG 57.412 34.615 15.01 15.01 38.48 3.67
610 611 7.692291 TCTCGTAGTTTTAAGATTTACGTACGG 59.308 37.037 21.06 1.43 38.48 4.02
611 612 7.523219 TCGTAGTTTTAAGATTTACGTACGGA 58.477 34.615 21.06 8.59 38.48 4.69
612 613 8.018520 TCGTAGTTTTAAGATTTACGTACGGAA 58.981 33.333 21.06 15.64 38.48 4.30
613 614 8.096109 CGTAGTTTTAAGATTTACGTACGGAAC 58.904 37.037 21.06 6.47 34.16 3.62
614 615 7.351414 AGTTTTAAGATTTACGTACGGAACC 57.649 36.000 21.06 11.64 0.00 3.62
615 616 6.368791 AGTTTTAAGATTTACGTACGGAACCC 59.631 38.462 21.06 11.27 0.00 4.11
616 617 3.959535 AAGATTTACGTACGGAACCCA 57.040 42.857 21.06 2.45 0.00 4.51
617 618 3.236632 AGATTTACGTACGGAACCCAC 57.763 47.619 21.06 8.40 0.00 4.61
618 619 1.919918 GATTTACGTACGGAACCCACG 59.080 52.381 21.06 9.90 41.32 4.94
620 621 1.524848 TTACGTACGGAACCCACGTA 58.475 50.000 21.06 16.20 46.23 3.57
623 624 4.388229 TACGGAACCCACGTACGA 57.612 55.556 24.41 0.00 44.93 3.43
624 625 2.635079 TACGGAACCCACGTACGAA 58.365 52.632 24.41 0.00 44.93 3.85
625 626 0.955178 TACGGAACCCACGTACGAAA 59.045 50.000 24.41 0.00 44.93 3.46
626 627 0.318955 ACGGAACCCACGTACGAAAG 60.319 55.000 24.41 11.71 43.60 2.62
627 628 1.010419 CGGAACCCACGTACGAAAGG 61.010 60.000 24.41 20.07 0.00 3.11
628 629 1.293963 GGAACCCACGTACGAAAGGC 61.294 60.000 24.41 6.27 0.00 4.35
641 642 3.602390 CGAAAGGCGTTTCTTGAGAAA 57.398 42.857 24.73 2.16 40.10 2.52
642 643 3.947626 CGAAAGGCGTTTCTTGAGAAAA 58.052 40.909 24.73 0.00 44.58 2.29
643 644 3.724257 CGAAAGGCGTTTCTTGAGAAAAC 59.276 43.478 24.73 4.03 44.58 2.43
644 645 3.710326 AAGGCGTTTCTTGAGAAAACC 57.290 42.857 7.69 11.71 44.58 3.27
645 646 2.650322 AGGCGTTTCTTGAGAAAACCA 58.350 42.857 20.32 0.00 44.58 3.67
646 647 2.357952 AGGCGTTTCTTGAGAAAACCAC 59.642 45.455 20.32 6.46 44.58 4.16
647 648 2.357952 GGCGTTTCTTGAGAAAACCACT 59.642 45.455 16.24 0.00 44.58 4.00
648 649 3.548214 GGCGTTTCTTGAGAAAACCACTC 60.548 47.826 16.24 0.00 44.58 3.51
649 650 3.548214 GCGTTTCTTGAGAAAACCACTCC 60.548 47.826 7.69 0.00 44.58 3.85
650 651 3.877508 CGTTTCTTGAGAAAACCACTCCT 59.122 43.478 7.69 0.00 44.58 3.69
651 652 5.054477 CGTTTCTTGAGAAAACCACTCCTA 58.946 41.667 7.69 0.00 44.58 2.94
652 653 5.177696 CGTTTCTTGAGAAAACCACTCCTAG 59.822 44.000 7.69 0.00 44.58 3.02
653 654 5.888982 TTCTTGAGAAAACCACTCCTAGT 57.111 39.130 0.00 0.00 33.95 2.57
654 655 5.888982 TCTTGAGAAAACCACTCCTAGTT 57.111 39.130 0.00 0.00 33.95 2.24
655 656 6.248569 TCTTGAGAAAACCACTCCTAGTTT 57.751 37.500 0.00 0.00 37.80 2.66
656 657 6.659824 TCTTGAGAAAACCACTCCTAGTTTT 58.340 36.000 0.80 0.80 46.11 2.43
657 658 7.116736 TCTTGAGAAAACCACTCCTAGTTTTT 58.883 34.615 2.74 0.00 44.11 1.94
688 689 9.165035 GCATTTCCATTATCAAATCAAAAGGAA 57.835 29.630 0.00 0.00 0.00 3.36
699 700 1.679153 TCAAAAGGAACCAAACGAGCC 59.321 47.619 0.00 0.00 0.00 4.70
730 731 3.536956 TTTAGGCATACTCCAACCGAG 57.463 47.619 0.00 0.00 44.95 4.63
735 736 1.269831 GCATACTCCAACCGAGCCTAG 60.270 57.143 0.00 0.00 43.01 3.02
779 781 2.270205 CAGTACCCTGCAGGCCTG 59.730 66.667 29.34 29.34 40.58 4.85
803 805 2.351738 CGACCAACAAGCCATTTCCTTC 60.352 50.000 0.00 0.00 0.00 3.46
806 808 1.969923 CAACAAGCCATTTCCTTCCCA 59.030 47.619 0.00 0.00 0.00 4.37
807 809 2.368221 CAACAAGCCATTTCCTTCCCAA 59.632 45.455 0.00 0.00 0.00 4.12
808 810 2.250924 ACAAGCCATTTCCTTCCCAAG 58.749 47.619 0.00 0.00 0.00 3.61
833 837 4.096532 TGCACACGAATTTCTAAACAACCA 59.903 37.500 0.00 0.00 0.00 3.67
895 903 5.276161 GCCAAACATACAAACAAGAAACGTG 60.276 40.000 0.00 0.00 0.00 4.49
932 942 1.336332 CCAGATCCTAATCGACGCAGG 60.336 57.143 0.00 0.00 36.97 4.85
1042 1052 3.129502 CCATGTCCTGCTGCGTGG 61.130 66.667 5.31 5.31 35.72 4.94
1059 1069 1.300697 GGTGCTCACCGTTCTCGTT 60.301 57.895 2.97 0.00 42.29 3.85
1215 1225 2.359850 GTGATGGCGAGCAACCCA 60.360 61.111 0.00 0.00 35.21 4.51
1586 1636 0.501435 CGTAATTACTAGGCGTGCGC 59.499 55.000 13.56 8.17 41.06 6.09
1596 1646 3.186047 GCGTGCGCCACTCGTAAT 61.186 61.111 4.18 0.00 41.07 1.89
1597 1647 2.995482 CGTGCGCCACTCGTAATC 59.005 61.111 4.18 0.00 41.07 1.75
1598 1648 2.514013 CGTGCGCCACTCGTAATCC 61.514 63.158 4.18 0.00 41.07 3.01
1636 1690 7.692088 TCTTGTGCCACAATTTGTTTTATTTG 58.308 30.769 11.26 0.00 37.48 2.32
1666 1720 7.230849 TCCAGTTTGTAAGTCGGAAACTATA 57.769 36.000 0.00 0.00 37.74 1.31
1667 1721 7.844009 TCCAGTTTGTAAGTCGGAAACTATAT 58.156 34.615 0.00 0.00 37.74 0.86
1668 1722 8.970020 TCCAGTTTGTAAGTCGGAAACTATATA 58.030 33.333 0.00 0.00 37.74 0.86
1669 1723 9.760077 CCAGTTTGTAAGTCGGAAACTATATAT 57.240 33.333 0.00 0.00 37.74 0.86
1696 1750 1.616865 TCCGGTTGTGAGTTCCTACTG 59.383 52.381 0.00 0.00 33.84 2.74
1730 1784 4.012374 TCTGAAGCTGATTCCAAATGACC 58.988 43.478 2.88 0.00 37.08 4.02
1731 1785 3.760151 CTGAAGCTGATTCCAAATGACCA 59.240 43.478 2.88 0.00 37.08 4.02
1733 1787 4.158949 TGAAGCTGATTCCAAATGACCATG 59.841 41.667 2.88 0.00 37.08 3.66
1737 1797 3.171528 TGATTCCAAATGACCATGCCAA 58.828 40.909 0.00 0.00 0.00 4.52
1740 1800 4.637387 TTCCAAATGACCATGCCAATTT 57.363 36.364 0.00 0.00 0.00 1.82
1762 1822 2.679996 GGCGGGCCCATGAACTTT 60.680 61.111 24.92 0.00 0.00 2.66
1783 1843 1.450211 CACTGGAGTCCCACGGTTT 59.550 57.895 6.74 0.00 37.58 3.27
1784 1844 0.682852 CACTGGAGTCCCACGGTTTA 59.317 55.000 6.74 0.00 37.58 2.01
1872 1932 9.703892 CAATCCAAAGACTATAGATTGGTCTAG 57.296 37.037 23.44 14.62 42.32 2.43
1960 2026 1.338389 CCCTCAAACGTAACCATCCGT 60.338 52.381 0.00 0.00 39.32 4.69
1963 2029 3.577667 CTCAAACGTAACCATCCGTACA 58.422 45.455 0.00 0.00 36.04 2.90
1977 2043 0.780002 CGTACAAAGTTGTCCGGACG 59.220 55.000 28.70 15.95 42.35 4.79
1978 2044 0.509929 GTACAAAGTTGTCCGGACGC 59.490 55.000 28.70 22.87 42.35 5.19
1980 2046 1.890041 CAAAGTTGTCCGGACGCCA 60.890 57.895 28.70 13.24 0.00 5.69
1984 2050 2.280524 TTGTCCGGACGCCACAAG 60.281 61.111 28.70 0.00 0.00 3.16
1990 2056 3.499737 GGACGCCACAAGCCATCG 61.500 66.667 0.00 0.00 38.78 3.84
1994 2060 0.107897 ACGCCACAAGCCATCGAATA 60.108 50.000 0.00 0.00 38.78 1.75
2002 2068 2.554032 CAAGCCATCGAATAATGTCCCC 59.446 50.000 0.00 0.00 0.00 4.81
2003 2069 1.073923 AGCCATCGAATAATGTCCCCC 59.926 52.381 0.00 0.00 0.00 5.40
2008 2074 4.218417 CCATCGAATAATGTCCCCCATTTC 59.782 45.833 0.00 0.00 41.01 2.17
2012 2078 3.508845 ATAATGTCCCCCATTTCTCCG 57.491 47.619 0.00 0.00 41.01 4.63
2019 2085 2.267642 CCATTTCTCCGCGGACCA 59.732 61.111 27.28 11.38 0.00 4.02
2045 2111 1.604438 GGTGTCCATTTTCCCGCAAAC 60.604 52.381 0.00 0.00 0.00 2.93
2046 2112 1.339929 GTGTCCATTTTCCCGCAAACT 59.660 47.619 0.00 0.00 0.00 2.66
2047 2113 1.339610 TGTCCATTTTCCCGCAAACTG 59.660 47.619 0.00 0.00 0.00 3.16
2048 2114 0.965439 TCCATTTTCCCGCAAACTGG 59.035 50.000 7.68 7.68 43.30 4.00
2049 2115 0.965439 CCATTTTCCCGCAAACTGGA 59.035 50.000 8.10 0.00 44.23 3.86
2050 2116 1.342819 CCATTTTCCCGCAAACTGGAA 59.657 47.619 8.10 0.00 44.23 3.53
2057 2123 1.543802 CCCGCAAACTGGAAGCAAATA 59.456 47.619 0.00 0.00 37.60 1.40
2058 2124 2.415893 CCCGCAAACTGGAAGCAAATAG 60.416 50.000 0.00 0.00 37.60 1.73
2063 2129 0.033109 ACTGGAAGCAAATAGGGGGC 60.033 55.000 0.00 0.00 37.60 5.80
2070 2136 1.264045 GCAAATAGGGGGCCTTTGCA 61.264 55.000 26.79 1.44 43.16 4.08
2071 2137 0.826062 CAAATAGGGGGCCTTTGCAG 59.174 55.000 0.84 0.00 40.13 4.41
2078 2144 2.436109 GGCCTTTGCAGGAGTCCA 59.564 61.111 12.86 0.00 44.19 4.02
2079 2145 1.228552 GGCCTTTGCAGGAGTCCAA 60.229 57.895 12.86 0.00 44.19 3.53
2085 2151 0.467290 TTGCAGGAGTCCAAACACCC 60.467 55.000 12.86 0.00 36.86 4.61
2087 2153 1.966451 CAGGAGTCCAAACACCCGC 60.966 63.158 12.86 0.00 36.86 6.13
2091 2157 3.656045 GTCCAAACACCCGCCACG 61.656 66.667 0.00 0.00 0.00 4.94
2097 2163 2.042404 AAACACCCGCCACGTAGGAA 62.042 55.000 8.04 0.00 41.22 3.36
2100 2166 2.108362 CCCGCCACGTAGGAATCC 59.892 66.667 8.04 0.00 41.22 3.01
2108 2174 1.325476 ACGTAGGAATCCGACACCCC 61.325 60.000 12.84 0.00 0.00 4.95
2127 2194 2.114411 GCCCACCCAAAACCGAGA 59.886 61.111 0.00 0.00 0.00 4.04
2129 2196 1.964373 CCCACCCAAAACCGAGACG 60.964 63.158 0.00 0.00 0.00 4.18
2159 2226 3.881795 GCATTTGGAGCGAGATGTATTG 58.118 45.455 0.00 0.00 0.00 1.90
2163 2230 5.545658 TTTGGAGCGAGATGTATTGTTTC 57.454 39.130 0.00 0.00 0.00 2.78
2164 2231 3.531538 TGGAGCGAGATGTATTGTTTCC 58.468 45.455 0.00 0.00 0.00 3.13
2167 2234 1.663643 GCGAGATGTATTGTTTCCGCA 59.336 47.619 0.00 0.00 40.88 5.69
2181 2248 2.359975 CGCAACAACCTCCTCCCC 60.360 66.667 0.00 0.00 0.00 4.81
2182 2249 2.035783 GCAACAACCTCCTCCCCC 59.964 66.667 0.00 0.00 0.00 5.40
2204 2271 2.309504 CCCCCTTTCCACCCTCTCC 61.310 68.421 0.00 0.00 0.00 3.71
2215 2284 0.031010 ACCCTCTCCACTACCATCCC 60.031 60.000 0.00 0.00 0.00 3.85
2216 2285 0.031111 CCCTCTCCACTACCATCCCA 60.031 60.000 0.00 0.00 0.00 4.37
2222 2291 1.144057 CACTACCATCCCACCGCTC 59.856 63.158 0.00 0.00 0.00 5.03
2234 2303 0.606401 CACCGCTCTCCACACCAATT 60.606 55.000 0.00 0.00 0.00 2.32
2247 2316 1.885887 CACCAATTCTCGCCCTTTTCA 59.114 47.619 0.00 0.00 0.00 2.69
2252 2321 3.431725 CTCGCCCTTTTCACCGCC 61.432 66.667 0.00 0.00 0.00 6.13
2269 2338 1.073722 CCGCTGCATGGACCCATAT 59.926 57.895 0.55 0.00 34.91 1.78
2276 2345 3.956199 CTGCATGGACCCATATGAAAAGT 59.044 43.478 3.65 0.00 34.91 2.66
2288 2357 5.391950 CCATATGAAAAGTTGTTGGAGACGG 60.392 44.000 3.65 0.00 0.00 4.79
2290 2359 0.661020 AAAAGTTGTTGGAGACGGCG 59.339 50.000 4.80 4.80 0.00 6.46
2316 2385 0.467804 GAGGATCCAGAGAAGGTGGC 59.532 60.000 15.82 0.00 34.77 5.01
2317 2386 1.144936 GGATCCAGAGAAGGTGGCG 59.855 63.158 6.95 0.00 34.77 5.69
2318 2387 1.144936 GATCCAGAGAAGGTGGCGG 59.855 63.158 0.00 0.00 34.77 6.13
2342 2411 2.732597 CGGAAGATCAACTCGGAGACAC 60.733 54.545 12.86 0.00 0.00 3.67
2362 2432 3.058160 CAAGCCCGCCACCTCAAG 61.058 66.667 0.00 0.00 0.00 3.02
2377 2447 1.897802 CTCAAGGCAAAGGCAAAGGAT 59.102 47.619 0.00 0.00 43.71 3.24
2378 2448 1.619827 TCAAGGCAAAGGCAAAGGATG 59.380 47.619 0.00 0.00 43.71 3.51
2379 2449 0.978907 AAGGCAAAGGCAAAGGATGG 59.021 50.000 0.00 0.00 43.71 3.51
2383 2453 1.158227 AAAGGCAAAGGATGGGGCA 59.842 52.632 0.00 0.00 0.00 5.36
2387 2457 2.037687 CAAAGGATGGGGCAGGCA 59.962 61.111 0.00 0.00 0.00 4.75
2388 2458 2.056223 CAAAGGATGGGGCAGGCAG 61.056 63.158 0.00 0.00 0.00 4.85
2402 2472 1.514873 GGCAGCGAAAAGAATGGCG 60.515 57.895 0.00 0.00 0.00 5.69
2405 2475 0.798776 CAGCGAAAAGAATGGCGACT 59.201 50.000 0.00 0.00 0.00 4.18
2485 2564 2.751036 CCATCCATGCGCACACCA 60.751 61.111 14.90 0.00 0.00 4.17
2486 2565 2.486504 CATCCATGCGCACACCAC 59.513 61.111 14.90 0.00 0.00 4.16
2501 2580 4.431131 CACCCTGGCCGGAGCAAT 62.431 66.667 15.09 0.00 42.56 3.56
2522 2601 1.361543 ACCAGCCTCCCTACTTCTACA 59.638 52.381 0.00 0.00 0.00 2.74
2540 2619 4.148825 CCGCCAAGTAGCTCGGCT 62.149 66.667 12.80 3.87 43.95 5.52
2541 2620 2.782222 CCGCCAAGTAGCTCGGCTA 61.782 63.158 12.80 1.99 43.95 3.93
2559 2638 4.101448 GCAGTCCCCAGCATCCGT 62.101 66.667 0.00 0.00 0.00 4.69
2561 2640 3.461773 AGTCCCCAGCATCCGTCG 61.462 66.667 0.00 0.00 0.00 5.12
2562 2641 3.771160 GTCCCCAGCATCCGTCGT 61.771 66.667 0.00 0.00 0.00 4.34
2571 2650 1.807226 CATCCGTCGTCAGGCACTA 59.193 57.895 0.00 0.00 36.02 2.74
2573 2652 2.005960 ATCCGTCGTCAGGCACTAGC 62.006 60.000 0.00 0.00 36.02 3.42
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 3.213402 CTCTCTCCCGTCCTCGCC 61.213 72.222 0.00 0.00 35.54 5.54
1 2 3.213402 CCTCTCTCCCGTCCTCGC 61.213 72.222 0.00 0.00 35.54 5.03
2 3 1.820481 GTCCTCTCTCCCGTCCTCG 60.820 68.421 0.00 0.00 0.00 4.63
3 4 0.750182 CAGTCCTCTCTCCCGTCCTC 60.750 65.000 0.00 0.00 0.00 3.71
4 5 1.304952 CAGTCCTCTCTCCCGTCCT 59.695 63.158 0.00 0.00 0.00 3.85
5 6 2.419739 GCAGTCCTCTCTCCCGTCC 61.420 68.421 0.00 0.00 0.00 4.79
6 7 1.379309 AGCAGTCCTCTCTCCCGTC 60.379 63.158 0.00 0.00 0.00 4.79
7 8 1.379309 GAGCAGTCCTCTCTCCCGT 60.379 63.158 0.00 0.00 37.60 5.28
8 9 3.520402 GAGCAGTCCTCTCTCCCG 58.480 66.667 0.00 0.00 37.60 5.14
15 16 1.516892 CTCCAGCAGAGCAGTCCTC 59.483 63.158 0.00 0.00 41.07 3.71
16 17 3.710926 CTCCAGCAGAGCAGTCCT 58.289 61.111 0.00 0.00 35.31 3.85
23 24 2.183811 CGGACAGCTCCAGCAGAG 59.816 66.667 0.48 0.00 46.29 3.35
24 25 4.074526 GCGGACAGCTCCAGCAGA 62.075 66.667 0.48 0.00 45.16 4.26
35 36 2.031012 CTTGCCTCTGTGCGGACA 59.969 61.111 10.11 10.11 0.00 4.02
36 37 2.731691 TTCCTTGCCTCTGTGCGGAC 62.732 60.000 0.00 0.00 0.00 4.79
37 38 2.515979 TTCCTTGCCTCTGTGCGGA 61.516 57.895 0.00 0.00 0.00 5.54
38 39 2.032528 TTCCTTGCCTCTGTGCGG 59.967 61.111 0.00 0.00 0.00 5.69
39 40 2.671177 CGTTCCTTGCCTCTGTGCG 61.671 63.158 0.00 0.00 0.00 5.34
40 41 2.328099 CCGTTCCTTGCCTCTGTGC 61.328 63.158 0.00 0.00 0.00 4.57
41 42 2.328099 GCCGTTCCTTGCCTCTGTG 61.328 63.158 0.00 0.00 0.00 3.66
42 43 2.032681 GCCGTTCCTTGCCTCTGT 59.967 61.111 0.00 0.00 0.00 3.41
43 44 2.037136 CAGCCGTTCCTTGCCTCTG 61.037 63.158 0.00 0.00 0.00 3.35
44 45 2.056906 AACAGCCGTTCCTTGCCTCT 62.057 55.000 0.00 0.00 0.00 3.69
45 46 1.600916 AACAGCCGTTCCTTGCCTC 60.601 57.895 0.00 0.00 0.00 4.70
46 47 1.898574 CAACAGCCGTTCCTTGCCT 60.899 57.895 0.00 0.00 31.13 4.75
47 48 1.856265 CTCAACAGCCGTTCCTTGCC 61.856 60.000 0.00 0.00 31.13 4.52
48 49 1.576421 CTCAACAGCCGTTCCTTGC 59.424 57.895 0.00 0.00 31.13 4.01
49 50 1.576421 GCTCAACAGCCGTTCCTTG 59.424 57.895 0.00 0.00 40.14 3.61
50 51 1.961277 CGCTCAACAGCCGTTCCTT 60.961 57.895 0.00 0.00 43.56 3.36
51 52 2.357517 CGCTCAACAGCCGTTCCT 60.358 61.111 0.00 0.00 43.56 3.36
52 53 4.090057 GCGCTCAACAGCCGTTCC 62.090 66.667 0.00 0.00 43.56 3.62
53 54 4.430423 CGCGCTCAACAGCCGTTC 62.430 66.667 5.56 0.00 43.56 3.95
84 85 3.110178 GTTCCGTCCGGTTCGCAG 61.110 66.667 14.20 4.62 36.47 5.18
87 88 3.958822 CTCCGTTCCGTCCGGTTCG 62.959 68.421 0.00 8.13 45.63 3.95
88 89 2.126189 CTCCGTTCCGTCCGGTTC 60.126 66.667 0.00 0.00 45.63 3.62
89 90 3.688159 CCTCCGTTCCGTCCGGTT 61.688 66.667 0.00 0.00 45.63 4.44
90 91 4.666253 TCCTCCGTTCCGTCCGGT 62.666 66.667 0.00 0.00 45.63 5.28
91 92 4.125695 GTCCTCCGTTCCGTCCGG 62.126 72.222 0.00 0.00 46.83 5.14
92 93 4.471726 CGTCCTCCGTTCCGTCCG 62.472 72.222 0.00 0.00 0.00 4.79
93 94 2.539263 CTTCGTCCTCCGTTCCGTCC 62.539 65.000 0.00 0.00 37.94 4.79
94 95 1.154073 CTTCGTCCTCCGTTCCGTC 60.154 63.158 0.00 0.00 37.94 4.79
95 96 1.174712 TTCTTCGTCCTCCGTTCCGT 61.175 55.000 0.00 0.00 37.94 4.69
96 97 0.456312 CTTCTTCGTCCTCCGTTCCG 60.456 60.000 0.00 0.00 37.94 4.30
97 98 0.886563 TCTTCTTCGTCCTCCGTTCC 59.113 55.000 0.00 0.00 37.94 3.62
98 99 1.811359 TCTCTTCTTCGTCCTCCGTTC 59.189 52.381 0.00 0.00 37.94 3.95
99 100 1.813786 CTCTCTTCTTCGTCCTCCGTT 59.186 52.381 0.00 0.00 37.94 4.44
100 101 1.455248 CTCTCTTCTTCGTCCTCCGT 58.545 55.000 0.00 0.00 37.94 4.69
101 102 0.736053 CCTCTCTTCTTCGTCCTCCG 59.264 60.000 0.00 0.00 38.13 4.63
102 103 2.021457 CTCCTCTCTTCTTCGTCCTCC 58.979 57.143 0.00 0.00 0.00 4.30
103 104 2.943033 CTCTCCTCTCTTCTTCGTCCTC 59.057 54.545 0.00 0.00 0.00 3.71
104 105 2.574369 TCTCTCCTCTCTTCTTCGTCCT 59.426 50.000 0.00 0.00 0.00 3.85
105 106 2.943033 CTCTCTCCTCTCTTCTTCGTCC 59.057 54.545 0.00 0.00 0.00 4.79
106 107 2.354821 GCTCTCTCCTCTCTTCTTCGTC 59.645 54.545 0.00 0.00 0.00 4.20
107 108 2.290641 TGCTCTCTCCTCTCTTCTTCGT 60.291 50.000 0.00 0.00 0.00 3.85
108 109 2.364632 TGCTCTCTCCTCTCTTCTTCG 58.635 52.381 0.00 0.00 0.00 3.79
109 110 4.799564 TTTGCTCTCTCCTCTCTTCTTC 57.200 45.455 0.00 0.00 0.00 2.87
110 111 4.080975 CCATTTGCTCTCTCCTCTCTTCTT 60.081 45.833 0.00 0.00 0.00 2.52
111 112 3.451902 CCATTTGCTCTCTCCTCTCTTCT 59.548 47.826 0.00 0.00 0.00 2.85
112 113 3.450457 TCCATTTGCTCTCTCCTCTCTTC 59.550 47.826 0.00 0.00 0.00 2.87
113 114 3.448934 TCCATTTGCTCTCTCCTCTCTT 58.551 45.455 0.00 0.00 0.00 2.85
114 115 3.113191 TCCATTTGCTCTCTCCTCTCT 57.887 47.619 0.00 0.00 0.00 3.10
115 116 3.244181 GGATCCATTTGCTCTCTCCTCTC 60.244 52.174 6.95 0.00 0.00 3.20
116 117 2.705127 GGATCCATTTGCTCTCTCCTCT 59.295 50.000 6.95 0.00 0.00 3.69
117 118 2.547642 CGGATCCATTTGCTCTCTCCTC 60.548 54.545 13.41 0.00 0.00 3.71
118 119 1.415659 CGGATCCATTTGCTCTCTCCT 59.584 52.381 13.41 0.00 0.00 3.69
119 120 1.542108 CCGGATCCATTTGCTCTCTCC 60.542 57.143 13.41 0.00 0.00 3.71
120 121 1.876322 CCGGATCCATTTGCTCTCTC 58.124 55.000 13.41 0.00 0.00 3.20
121 122 0.179034 GCCGGATCCATTTGCTCTCT 60.179 55.000 13.41 0.00 0.00 3.10
122 123 0.464373 TGCCGGATCCATTTGCTCTC 60.464 55.000 13.41 0.00 0.00 3.20
123 124 0.465097 CTGCCGGATCCATTTGCTCT 60.465 55.000 13.41 0.00 0.00 4.09
124 125 2.028130 CTGCCGGATCCATTTGCTC 58.972 57.895 13.41 0.00 0.00 4.26
125 126 2.123428 GCTGCCGGATCCATTTGCT 61.123 57.895 13.41 0.00 0.00 3.91
126 127 2.068277 GAGCTGCCGGATCCATTTGC 62.068 60.000 13.41 10.36 0.00 3.68
127 128 1.779025 CGAGCTGCCGGATCCATTTG 61.779 60.000 13.41 0.00 0.00 2.32
128 129 1.524621 CGAGCTGCCGGATCCATTT 60.525 57.895 13.41 0.00 0.00 2.32
129 130 2.109799 CGAGCTGCCGGATCCATT 59.890 61.111 13.41 0.00 0.00 3.16
137 138 4.598894 CCATCCTCCGAGCTGCCG 62.599 72.222 0.00 0.00 0.00 5.69
138 139 2.049627 AATCCATCCTCCGAGCTGCC 62.050 60.000 0.00 0.00 0.00 4.85
139 140 0.179034 AAATCCATCCTCCGAGCTGC 60.179 55.000 0.00 0.00 0.00 5.25
140 141 1.590932 CAAATCCATCCTCCGAGCTG 58.409 55.000 0.00 0.00 0.00 4.24
141 142 0.471617 CCAAATCCATCCTCCGAGCT 59.528 55.000 0.00 0.00 0.00 4.09
142 143 0.181350 ACCAAATCCATCCTCCGAGC 59.819 55.000 0.00 0.00 0.00 5.03
143 144 1.959042 CACCAAATCCATCCTCCGAG 58.041 55.000 0.00 0.00 0.00 4.63
144 145 0.107214 GCACCAAATCCATCCTCCGA 60.107 55.000 0.00 0.00 0.00 4.55
145 146 0.394216 TGCACCAAATCCATCCTCCG 60.394 55.000 0.00 0.00 0.00 4.63
146 147 1.851304 TTGCACCAAATCCATCCTCC 58.149 50.000 0.00 0.00 0.00 4.30
147 148 4.186159 CAAATTGCACCAAATCCATCCTC 58.814 43.478 0.00 0.00 0.00 3.71
148 149 3.054948 CCAAATTGCACCAAATCCATCCT 60.055 43.478 0.00 0.00 0.00 3.24
149 150 3.272581 CCAAATTGCACCAAATCCATCC 58.727 45.455 0.00 0.00 0.00 3.51
150 151 3.055240 TCCCAAATTGCACCAAATCCATC 60.055 43.478 0.00 0.00 0.00 3.51
151 152 2.911636 TCCCAAATTGCACCAAATCCAT 59.088 40.909 0.00 0.00 0.00 3.41
152 153 2.333069 TCCCAAATTGCACCAAATCCA 58.667 42.857 0.00 0.00 0.00 3.41
153 154 3.272581 CATCCCAAATTGCACCAAATCC 58.727 45.455 0.00 0.00 0.00 3.01
154 155 3.685756 CACATCCCAAATTGCACCAAATC 59.314 43.478 0.00 0.00 0.00 2.17
155 156 3.559597 CCACATCCCAAATTGCACCAAAT 60.560 43.478 0.00 0.00 0.00 2.32
156 157 2.224475 CCACATCCCAAATTGCACCAAA 60.224 45.455 0.00 0.00 0.00 3.28
157 158 1.347050 CCACATCCCAAATTGCACCAA 59.653 47.619 0.00 0.00 0.00 3.67
158 159 0.975135 CCACATCCCAAATTGCACCA 59.025 50.000 0.00 0.00 0.00 4.17
159 160 0.975887 ACCACATCCCAAATTGCACC 59.024 50.000 0.00 0.00 0.00 5.01
160 161 1.402720 CGACCACATCCCAAATTGCAC 60.403 52.381 0.00 0.00 0.00 4.57
161 162 0.887247 CGACCACATCCCAAATTGCA 59.113 50.000 0.00 0.00 0.00 4.08
162 163 0.173255 CCGACCACATCCCAAATTGC 59.827 55.000 0.00 0.00 0.00 3.56
163 164 0.817013 CCCGACCACATCCCAAATTG 59.183 55.000 0.00 0.00 0.00 2.32
164 165 0.970427 GCCCGACCACATCCCAAATT 60.970 55.000 0.00 0.00 0.00 1.82
165 166 1.379843 GCCCGACCACATCCCAAAT 60.380 57.895 0.00 0.00 0.00 2.32
166 167 2.034999 GCCCGACCACATCCCAAA 59.965 61.111 0.00 0.00 0.00 3.28
167 168 2.933287 AGCCCGACCACATCCCAA 60.933 61.111 0.00 0.00 0.00 4.12
168 169 3.716195 CAGCCCGACCACATCCCA 61.716 66.667 0.00 0.00 0.00 4.37
169 170 3.682292 GACAGCCCGACCACATCCC 62.682 68.421 0.00 0.00 0.00 3.85
170 171 2.125106 GACAGCCCGACCACATCC 60.125 66.667 0.00 0.00 0.00 3.51
171 172 2.509336 CGACAGCCCGACCACATC 60.509 66.667 0.00 0.00 0.00 3.06
172 173 4.082523 CCGACAGCCCGACCACAT 62.083 66.667 0.00 0.00 0.00 3.21
174 175 3.718210 GATCCGACAGCCCGACCAC 62.718 68.421 0.00 0.00 0.00 4.16
175 176 3.458163 GATCCGACAGCCCGACCA 61.458 66.667 0.00 0.00 0.00 4.02
176 177 4.222847 GGATCCGACAGCCCGACC 62.223 72.222 0.00 0.00 0.00 4.79
177 178 4.570663 CGGATCCGACAGCCCGAC 62.571 72.222 30.62 0.00 44.29 4.79
205 206 1.148310 CTAAATATGAGGCGGGCACG 58.852 55.000 2.50 2.50 44.63 5.34
206 207 1.523758 CCTAAATATGAGGCGGGCAC 58.476 55.000 3.78 0.00 0.00 5.01
213 214 5.338708 CCCCATGTCTAGCCTAAATATGAGG 60.339 48.000 0.00 0.29 37.12 3.86
214 215 5.249393 ACCCCATGTCTAGCCTAAATATGAG 59.751 44.000 0.00 0.00 0.00 2.90
215 216 5.162637 ACCCCATGTCTAGCCTAAATATGA 58.837 41.667 0.00 0.00 0.00 2.15
216 217 5.505181 ACCCCATGTCTAGCCTAAATATG 57.495 43.478 0.00 0.00 0.00 1.78
217 218 5.487845 GGTACCCCATGTCTAGCCTAAATAT 59.512 44.000 0.00 0.00 0.00 1.28
218 219 4.842380 GGTACCCCATGTCTAGCCTAAATA 59.158 45.833 0.00 0.00 0.00 1.40
219 220 3.651423 GGTACCCCATGTCTAGCCTAAAT 59.349 47.826 0.00 0.00 0.00 1.40
220 221 3.043418 GGTACCCCATGTCTAGCCTAAA 58.957 50.000 0.00 0.00 0.00 1.85
221 222 2.686119 GGTACCCCATGTCTAGCCTAA 58.314 52.381 0.00 0.00 0.00 2.69
222 223 2.393630 GGTACCCCATGTCTAGCCTA 57.606 55.000 0.00 0.00 0.00 3.93
223 224 3.242355 GGTACCCCATGTCTAGCCT 57.758 57.895 0.00 0.00 0.00 4.58
495 496 3.560068 GGTCACTGTCTGATCACGTTTTT 59.440 43.478 0.00 0.00 29.18 1.94
496 497 3.131396 GGTCACTGTCTGATCACGTTTT 58.869 45.455 0.00 0.00 29.18 2.43
497 498 2.755650 GGTCACTGTCTGATCACGTTT 58.244 47.619 0.00 0.00 29.18 3.60
498 499 1.335964 CGGTCACTGTCTGATCACGTT 60.336 52.381 0.00 0.00 29.18 3.99
499 500 0.241213 CGGTCACTGTCTGATCACGT 59.759 55.000 0.00 0.00 29.18 4.49
500 501 0.456824 CCGGTCACTGTCTGATCACG 60.457 60.000 0.00 0.00 29.18 4.35
501 502 0.108615 CCCGGTCACTGTCTGATCAC 60.109 60.000 0.00 0.00 29.18 3.06
502 503 1.888436 GCCCGGTCACTGTCTGATCA 61.888 60.000 0.00 0.00 29.18 2.92
503 504 1.153549 GCCCGGTCACTGTCTGATC 60.154 63.158 0.00 0.00 0.00 2.92
504 505 2.982130 GCCCGGTCACTGTCTGAT 59.018 61.111 0.00 0.00 0.00 2.90
505 506 3.680786 CGCCCGGTCACTGTCTGA 61.681 66.667 0.00 0.00 0.00 3.27
506 507 4.742201 CCGCCCGGTCACTGTCTG 62.742 72.222 0.00 0.00 0.00 3.51
525 526 4.508128 ACCTCATACGTGCGGGCG 62.508 66.667 0.00 0.00 34.44 6.13
526 527 2.585247 GACCTCATACGTGCGGGC 60.585 66.667 0.00 0.00 34.44 6.13
527 528 2.278596 CGACCTCATACGTGCGGG 60.279 66.667 0.00 0.00 34.44 6.13
528 529 2.278596 CCGACCTCATACGTGCGG 60.279 66.667 0.00 0.00 36.27 5.69
529 530 0.734942 AAACCGACCTCATACGTGCG 60.735 55.000 0.00 0.00 0.00 5.34
530 531 0.719465 CAAACCGACCTCATACGTGC 59.281 55.000 0.00 0.00 0.00 5.34
531 532 2.259618 CTCAAACCGACCTCATACGTG 58.740 52.381 0.00 0.00 0.00 4.49
532 533 1.203994 CCTCAAACCGACCTCATACGT 59.796 52.381 0.00 0.00 0.00 3.57
533 534 1.475280 TCCTCAAACCGACCTCATACG 59.525 52.381 0.00 0.00 0.00 3.06
534 535 3.056035 ACTTCCTCAAACCGACCTCATAC 60.056 47.826 0.00 0.00 0.00 2.39
535 536 3.170717 ACTTCCTCAAACCGACCTCATA 58.829 45.455 0.00 0.00 0.00 2.15
536 537 1.978580 ACTTCCTCAAACCGACCTCAT 59.021 47.619 0.00 0.00 0.00 2.90
537 538 1.343465 GACTTCCTCAAACCGACCTCA 59.657 52.381 0.00 0.00 0.00 3.86
538 539 1.343465 TGACTTCCTCAAACCGACCTC 59.657 52.381 0.00 0.00 0.00 3.85
539 540 1.344763 CTGACTTCCTCAAACCGACCT 59.655 52.381 0.00 0.00 0.00 3.85
540 541 1.070289 ACTGACTTCCTCAAACCGACC 59.930 52.381 0.00 0.00 0.00 4.79
541 542 2.528041 ACTGACTTCCTCAAACCGAC 57.472 50.000 0.00 0.00 0.00 4.79
542 543 3.118555 TCAAACTGACTTCCTCAAACCGA 60.119 43.478 0.00 0.00 0.00 4.69
543 544 3.202906 TCAAACTGACTTCCTCAAACCG 58.797 45.455 0.00 0.00 0.00 4.44
544 545 3.565902 CCTCAAACTGACTTCCTCAAACC 59.434 47.826 0.00 0.00 0.00 3.27
545 546 3.003793 GCCTCAAACTGACTTCCTCAAAC 59.996 47.826 0.00 0.00 0.00 2.93
546 547 3.214328 GCCTCAAACTGACTTCCTCAAA 58.786 45.455 0.00 0.00 0.00 2.69
547 548 2.806745 CGCCTCAAACTGACTTCCTCAA 60.807 50.000 0.00 0.00 0.00 3.02
548 549 1.270305 CGCCTCAAACTGACTTCCTCA 60.270 52.381 0.00 0.00 0.00 3.86
549 550 1.270358 ACGCCTCAAACTGACTTCCTC 60.270 52.381 0.00 0.00 0.00 3.71
550 551 0.759346 ACGCCTCAAACTGACTTCCT 59.241 50.000 0.00 0.00 0.00 3.36
551 552 1.149148 GACGCCTCAAACTGACTTCC 58.851 55.000 0.00 0.00 0.00 3.46
552 553 1.149148 GGACGCCTCAAACTGACTTC 58.851 55.000 0.00 0.00 0.00 3.01
553 554 0.600255 CGGACGCCTCAAACTGACTT 60.600 55.000 0.00 0.00 0.00 3.01
554 555 1.006102 CGGACGCCTCAAACTGACT 60.006 57.895 0.00 0.00 0.00 3.41
555 556 1.006571 TCGGACGCCTCAAACTGAC 60.007 57.895 0.00 0.00 0.00 3.51
556 557 1.006571 GTCGGACGCCTCAAACTGA 60.007 57.895 0.00 0.00 0.00 3.41
557 558 0.242825 TAGTCGGACGCCTCAAACTG 59.757 55.000 1.89 0.00 0.00 3.16
558 559 1.183549 ATAGTCGGACGCCTCAAACT 58.816 50.000 1.89 0.00 0.00 2.66
559 560 2.357009 TCTATAGTCGGACGCCTCAAAC 59.643 50.000 1.89 0.00 0.00 2.93
560 561 2.646930 TCTATAGTCGGACGCCTCAAA 58.353 47.619 1.89 0.00 0.00 2.69
561 562 2.336945 TCTATAGTCGGACGCCTCAA 57.663 50.000 1.89 0.00 0.00 3.02
562 563 2.152016 CATCTATAGTCGGACGCCTCA 58.848 52.381 1.89 0.00 0.00 3.86
563 564 1.135632 GCATCTATAGTCGGACGCCTC 60.136 57.143 1.89 0.00 0.00 4.70
564 565 0.882474 GCATCTATAGTCGGACGCCT 59.118 55.000 1.89 0.00 0.00 5.52
565 566 0.882474 AGCATCTATAGTCGGACGCC 59.118 55.000 1.89 0.00 0.00 5.68
566 567 2.250348 GAGCATCTATAGTCGGACGC 57.750 55.000 1.89 0.00 0.00 5.19
579 580 8.260550 CGTAAATCTTAAAACTACGAGAGCATC 58.739 37.037 0.00 0.00 38.03 3.91
580 581 7.758528 ACGTAAATCTTAAAACTACGAGAGCAT 59.241 33.333 6.91 0.00 38.87 3.79
581 582 7.086376 ACGTAAATCTTAAAACTACGAGAGCA 58.914 34.615 6.91 0.00 38.87 4.26
582 583 7.503549 ACGTAAATCTTAAAACTACGAGAGC 57.496 36.000 6.91 0.00 38.87 4.09
583 584 8.719696 CGTACGTAAATCTTAAAACTACGAGAG 58.280 37.037 7.22 0.00 38.87 3.20
584 585 7.692291 CCGTACGTAAATCTTAAAACTACGAGA 59.308 37.037 15.21 0.00 38.87 4.04
585 586 7.692291 TCCGTACGTAAATCTTAAAACTACGAG 59.308 37.037 15.21 0.00 38.87 4.18
586 587 7.523219 TCCGTACGTAAATCTTAAAACTACGA 58.477 34.615 15.21 0.00 38.87 3.43
587 588 7.719689 TCCGTACGTAAATCTTAAAACTACG 57.280 36.000 15.21 0.00 40.78 3.51
588 589 8.373256 GGTTCCGTACGTAAATCTTAAAACTAC 58.627 37.037 15.21 0.00 0.00 2.73
589 590 7.544217 GGGTTCCGTACGTAAATCTTAAAACTA 59.456 37.037 15.21 0.00 0.00 2.24
590 591 6.368791 GGGTTCCGTACGTAAATCTTAAAACT 59.631 38.462 15.21 0.00 0.00 2.66
591 592 6.147000 TGGGTTCCGTACGTAAATCTTAAAAC 59.853 38.462 15.21 2.96 0.00 2.43
592 593 6.147000 GTGGGTTCCGTACGTAAATCTTAAAA 59.853 38.462 15.21 0.00 0.00 1.52
593 594 5.637387 GTGGGTTCCGTACGTAAATCTTAAA 59.363 40.000 15.21 0.00 0.00 1.52
594 595 5.167845 GTGGGTTCCGTACGTAAATCTTAA 58.832 41.667 15.21 0.00 0.00 1.85
595 596 4.674101 CGTGGGTTCCGTACGTAAATCTTA 60.674 45.833 15.21 0.40 33.48 2.10
596 597 3.588955 GTGGGTTCCGTACGTAAATCTT 58.411 45.455 15.21 0.00 0.00 2.40
597 598 2.415893 CGTGGGTTCCGTACGTAAATCT 60.416 50.000 15.21 0.00 33.48 2.40
598 599 1.919918 CGTGGGTTCCGTACGTAAATC 59.080 52.381 15.21 8.33 33.48 2.17
599 600 1.994916 CGTGGGTTCCGTACGTAAAT 58.005 50.000 15.21 0.00 33.48 1.40
600 601 3.488048 CGTGGGTTCCGTACGTAAA 57.512 52.632 15.21 5.36 33.48 2.01
606 607 0.955178 TTTCGTACGTGGGTTCCGTA 59.045 50.000 16.05 0.00 39.60 4.02
607 608 0.318955 CTTTCGTACGTGGGTTCCGT 60.319 55.000 16.05 0.00 42.06 4.69
608 609 1.010419 CCTTTCGTACGTGGGTTCCG 61.010 60.000 16.05 0.00 0.00 4.30
609 610 1.293963 GCCTTTCGTACGTGGGTTCC 61.294 60.000 16.05 0.68 0.00 3.62
610 611 1.620413 CGCCTTTCGTACGTGGGTTC 61.620 60.000 16.05 3.90 0.00 3.62
611 612 1.665599 CGCCTTTCGTACGTGGGTT 60.666 57.895 16.05 0.00 0.00 4.11
612 613 2.048877 CGCCTTTCGTACGTGGGT 60.049 61.111 16.05 0.00 0.00 4.51
621 622 3.602390 TTTCTCAAGAAACGCCTTTCG 57.398 42.857 1.06 0.00 40.79 3.46
622 623 4.042398 GGTTTTCTCAAGAAACGCCTTTC 58.958 43.478 4.71 0.40 43.01 2.62
623 624 3.445805 TGGTTTTCTCAAGAAACGCCTTT 59.554 39.130 18.34 0.00 43.01 3.11
624 625 3.020984 TGGTTTTCTCAAGAAACGCCTT 58.979 40.909 18.34 0.00 43.01 4.35
625 626 2.357952 GTGGTTTTCTCAAGAAACGCCT 59.642 45.455 18.34 0.00 43.01 5.52
626 627 2.357952 AGTGGTTTTCTCAAGAAACGCC 59.642 45.455 4.71 10.37 43.01 5.68
627 628 3.548214 GGAGTGGTTTTCTCAAGAAACGC 60.548 47.826 4.71 2.42 43.01 4.84
628 629 3.877508 AGGAGTGGTTTTCTCAAGAAACG 59.122 43.478 4.71 0.00 43.01 3.60
629 630 6.056236 ACTAGGAGTGGTTTTCTCAAGAAAC 58.944 40.000 4.71 1.73 43.01 2.78
630 631 6.248569 ACTAGGAGTGGTTTTCTCAAGAAA 57.751 37.500 1.06 1.06 41.77 2.52
631 632 5.888982 ACTAGGAGTGGTTTTCTCAAGAA 57.111 39.130 0.00 0.00 34.04 2.52
632 633 5.888982 AACTAGGAGTGGTTTTCTCAAGA 57.111 39.130 0.00 0.00 34.04 3.02
633 634 6.944234 AAAACTAGGAGTGGTTTTCTCAAG 57.056 37.500 0.00 0.00 41.99 3.02
660 661 9.820725 CCTTTTGATTTGATAATGGAAATGCTA 57.179 29.630 0.00 0.00 0.00 3.49
661 662 8.542080 TCCTTTTGATTTGATAATGGAAATGCT 58.458 29.630 0.00 0.00 0.00 3.79
662 663 8.721019 TCCTTTTGATTTGATAATGGAAATGC 57.279 30.769 0.00 0.00 0.00 3.56
664 665 9.671279 GGTTCCTTTTGATTTGATAATGGAAAT 57.329 29.630 0.00 0.00 37.06 2.17
665 666 8.654997 TGGTTCCTTTTGATTTGATAATGGAAA 58.345 29.630 0.00 0.00 37.06 3.13
666 667 8.200024 TGGTTCCTTTTGATTTGATAATGGAA 57.800 30.769 0.00 0.00 34.57 3.53
667 668 7.789202 TGGTTCCTTTTGATTTGATAATGGA 57.211 32.000 0.00 0.00 0.00 3.41
668 669 8.720562 GTTTGGTTCCTTTTGATTTGATAATGG 58.279 33.333 0.00 0.00 0.00 3.16
669 670 8.434661 CGTTTGGTTCCTTTTGATTTGATAATG 58.565 33.333 0.00 0.00 0.00 1.90
670 671 8.364142 TCGTTTGGTTCCTTTTGATTTGATAAT 58.636 29.630 0.00 0.00 0.00 1.28
671 672 7.717568 TCGTTTGGTTCCTTTTGATTTGATAA 58.282 30.769 0.00 0.00 0.00 1.75
672 673 7.278461 TCGTTTGGTTCCTTTTGATTTGATA 57.722 32.000 0.00 0.00 0.00 2.15
673 674 6.155475 TCGTTTGGTTCCTTTTGATTTGAT 57.845 33.333 0.00 0.00 0.00 2.57
674 675 5.584253 TCGTTTGGTTCCTTTTGATTTGA 57.416 34.783 0.00 0.00 0.00 2.69
675 676 4.209080 GCTCGTTTGGTTCCTTTTGATTTG 59.791 41.667 0.00 0.00 0.00 2.32
688 689 1.375326 GAAGGAGGGCTCGTTTGGT 59.625 57.895 0.00 0.00 37.75 3.67
699 700 5.104259 AGTATGCCTAAAACTGAAGGAGG 57.896 43.478 0.00 0.00 34.58 4.30
730 731 4.381411 ACAACTCACTCTGTTTTCTAGGC 58.619 43.478 0.00 0.00 0.00 3.93
775 777 2.639286 CTTGTTGGTCGTGCAGGC 59.361 61.111 0.35 0.00 0.00 4.85
776 778 2.639286 GCTTGTTGGTCGTGCAGG 59.361 61.111 0.00 0.00 0.00 4.85
777 779 1.518056 ATGGCTTGTTGGTCGTGCAG 61.518 55.000 0.00 0.00 0.00 4.41
778 780 1.106351 AATGGCTTGTTGGTCGTGCA 61.106 50.000 0.00 0.00 0.00 4.57
779 781 0.031994 AAATGGCTTGTTGGTCGTGC 59.968 50.000 0.00 0.00 0.00 5.34
780 782 1.335872 GGAAATGGCTTGTTGGTCGTG 60.336 52.381 0.00 0.00 0.00 4.35
781 783 0.958822 GGAAATGGCTTGTTGGTCGT 59.041 50.000 0.00 0.00 0.00 4.34
782 784 1.247567 AGGAAATGGCTTGTTGGTCG 58.752 50.000 0.00 0.00 0.00 4.79
783 785 2.029020 GGAAGGAAATGGCTTGTTGGTC 60.029 50.000 0.00 0.00 0.00 4.02
803 805 2.489329 AGAAATTCGTGTGCATCTTGGG 59.511 45.455 0.00 0.00 0.00 4.12
806 808 6.312399 TGTTTAGAAATTCGTGTGCATCTT 57.688 33.333 0.00 0.00 0.00 2.40
807 809 5.940192 TGTTTAGAAATTCGTGTGCATCT 57.060 34.783 0.00 0.00 0.00 2.90
808 810 5.342259 GGTTGTTTAGAAATTCGTGTGCATC 59.658 40.000 0.00 0.00 0.00 3.91
833 837 0.482446 TGCCCATGGGTTTTCAGTCT 59.518 50.000 31.58 0.00 37.65 3.24
895 903 1.880027 CTGGCTCCCGTTATATTTGCC 59.120 52.381 0.00 0.00 39.33 4.52
932 942 3.596214 CCTGTATGTGTACCTGGTTGTC 58.404 50.000 3.84 0.00 0.00 3.18
987 997 0.383231 CCTTCATGGCCGCTGAATTC 59.617 55.000 17.96 0.00 32.50 2.17
991 1001 4.113815 CCCCTTCATGGCCGCTGA 62.114 66.667 0.00 0.00 0.00 4.26
994 1004 4.883354 CCTCCCCTTCATGGCCGC 62.883 72.222 0.00 0.00 0.00 6.53
1042 1052 1.918609 GATAACGAGAACGGTGAGCAC 59.081 52.381 0.00 0.00 44.46 4.40
1059 1069 0.567687 TGGAGAGGATGCCCAGGATA 59.432 55.000 0.00 0.00 33.88 2.59
1188 1198 4.450122 GCCATCACGTGCACGCTG 62.450 66.667 37.35 30.54 44.43 5.18
1305 1315 4.814294 GTCGTCCGCCTGCCGATT 62.814 66.667 0.00 0.00 40.02 3.34
1346 1356 1.537889 ACCTTGATCCCGTCCACCA 60.538 57.895 0.00 0.00 0.00 4.17
1586 1636 2.368548 TGGATGGATGGATTACGAGTGG 59.631 50.000 0.00 0.00 0.00 4.00
1588 1638 3.261897 GGATGGATGGATGGATTACGAGT 59.738 47.826 0.00 0.00 0.00 4.18
1595 1645 3.074094 CACAAGAGGATGGATGGATGGAT 59.926 47.826 0.00 0.00 0.00 3.41
1596 1646 2.440627 CACAAGAGGATGGATGGATGGA 59.559 50.000 0.00 0.00 0.00 3.41
1597 1647 2.860009 CACAAGAGGATGGATGGATGG 58.140 52.381 0.00 0.00 0.00 3.51
1598 1648 2.228059 GCACAAGAGGATGGATGGATG 58.772 52.381 0.00 0.00 0.00 3.51
1636 1690 4.812626 TCCGACTTACAAACTGGAAAGAAC 59.187 41.667 0.00 0.00 0.00 3.01
1696 1750 4.112634 TCAGCTTCAGAATGTACGTATGC 58.887 43.478 0.00 0.00 37.40 3.14
1737 1797 3.301222 ATGGGCCCGCCACTGAAAT 62.301 57.895 19.37 0.00 37.98 2.17
1762 1822 1.982395 CCGTGGGACTCCAGTGCTA 60.982 63.158 0.00 0.00 45.05 3.49
1960 2026 0.600782 GGCGTCCGGACAACTTTGTA 60.601 55.000 32.80 0.00 42.43 2.41
1963 2029 1.890510 GTGGCGTCCGGACAACTTT 60.891 57.895 32.80 0.00 33.40 2.66
1975 2041 0.107897 TATTCGATGGCTTGTGGCGT 60.108 50.000 0.00 0.00 42.94 5.68
1976 2042 1.013596 TTATTCGATGGCTTGTGGCG 58.986 50.000 0.00 0.00 42.94 5.69
1977 2043 2.358898 ACATTATTCGATGGCTTGTGGC 59.641 45.455 0.00 0.00 40.90 5.01
1978 2044 3.003689 GGACATTATTCGATGGCTTGTGG 59.996 47.826 0.00 0.00 35.32 4.17
1980 2046 3.214328 GGGACATTATTCGATGGCTTGT 58.786 45.455 0.00 0.00 35.32 3.16
1984 2050 1.202879 TGGGGGACATTATTCGATGGC 60.203 52.381 0.00 0.00 34.15 4.40
2002 2068 1.815421 CTGGTCCGCGGAGAAATGG 60.815 63.158 31.97 11.89 0.00 3.16
2003 2069 0.673644 AACTGGTCCGCGGAGAAATG 60.674 55.000 31.97 18.86 0.00 2.32
2008 2074 4.796231 CCGAACTGGTCCGCGGAG 62.796 72.222 31.97 20.32 46.29 4.63
2012 2078 4.309950 ACACCCGAACTGGTCCGC 62.310 66.667 0.00 0.00 36.12 5.54
2019 2085 1.546998 GGGAAAATGGACACCCGAACT 60.547 52.381 0.00 0.00 34.29 3.01
2045 2111 0.756815 GGCCCCCTATTTGCTTCCAG 60.757 60.000 0.00 0.00 0.00 3.86
2046 2112 1.221213 AGGCCCCCTATTTGCTTCCA 61.221 55.000 0.00 0.00 28.47 3.53
2047 2113 0.032117 AAGGCCCCCTATTTGCTTCC 60.032 55.000 0.00 0.00 31.13 3.46
2048 2114 1.482182 CAAAGGCCCCCTATTTGCTTC 59.518 52.381 0.00 0.00 31.13 3.86
2049 2115 1.571955 CAAAGGCCCCCTATTTGCTT 58.428 50.000 0.00 0.00 31.13 3.91
2050 2116 3.305181 CAAAGGCCCCCTATTTGCT 57.695 52.632 0.00 0.00 31.13 3.91
2057 2123 3.665971 CTCCTGCAAAGGCCCCCT 61.666 66.667 0.00 0.00 40.13 4.79
2058 2124 3.946126 GACTCCTGCAAAGGCCCCC 62.946 68.421 0.00 0.00 40.13 5.40
2063 2129 1.338020 GTGTTTGGACTCCTGCAAAGG 59.662 52.381 0.00 0.00 38.29 3.11
2070 2136 2.430367 GCGGGTGTTTGGACTCCT 59.570 61.111 0.00 0.00 39.01 3.69
2071 2137 2.671963 GGCGGGTGTTTGGACTCC 60.672 66.667 0.00 0.00 38.44 3.85
2078 2144 2.031465 CCTACGTGGCGGGTGTTT 59.969 61.111 0.00 0.00 0.00 2.83
2079 2145 1.833787 ATTCCTACGTGGCGGGTGTT 61.834 55.000 0.00 0.00 35.26 3.32
2085 2151 1.588139 GTCGGATTCCTACGTGGCG 60.588 63.158 0.00 0.00 35.26 5.69
2087 2153 0.179119 GGTGTCGGATTCCTACGTGG 60.179 60.000 0.00 0.00 37.10 4.94
2091 2157 1.440476 CGGGGTGTCGGATTCCTAC 59.560 63.158 0.30 0.37 0.00 3.18
2108 2174 4.958897 TCGGTTTTGGGTGGGCCG 62.959 66.667 0.00 0.00 43.32 6.13
2127 2194 2.677003 CCAAATGCGCGTTCTCCGT 61.677 57.895 16.53 0.00 39.32 4.69
2129 2196 1.425428 CTCCAAATGCGCGTTCTCC 59.575 57.895 16.53 0.00 0.00 3.71
2138 2205 3.313526 ACAATACATCTCGCTCCAAATGC 59.686 43.478 0.00 0.00 0.00 3.56
2159 2226 0.591659 GAGGAGGTTGTTGCGGAAAC 59.408 55.000 0.00 0.00 39.41 2.78
2163 2230 2.359975 GGGAGGAGGTTGTTGCGG 60.360 66.667 0.00 0.00 0.00 5.69
2164 2231 2.359975 GGGGAGGAGGTTGTTGCG 60.360 66.667 0.00 0.00 0.00 4.85
2181 2248 3.347590 GGTGGAAAGGGGGAGGGG 61.348 72.222 0.00 0.00 0.00 4.79
2182 2249 3.347590 GGGTGGAAAGGGGGAGGG 61.348 72.222 0.00 0.00 0.00 4.30
2183 2250 2.204306 AGGGTGGAAAGGGGGAGG 60.204 66.667 0.00 0.00 0.00 4.30
2185 2252 1.229853 GAGAGGGTGGAAAGGGGGA 60.230 63.158 0.00 0.00 0.00 4.81
2186 2253 2.309504 GGAGAGGGTGGAAAGGGGG 61.310 68.421 0.00 0.00 0.00 5.40
2187 2254 1.541368 TGGAGAGGGTGGAAAGGGG 60.541 63.158 0.00 0.00 0.00 4.79
2188 2255 0.842467 AGTGGAGAGGGTGGAAAGGG 60.842 60.000 0.00 0.00 0.00 3.95
2189 2256 1.555533 GTAGTGGAGAGGGTGGAAAGG 59.444 57.143 0.00 0.00 0.00 3.11
2190 2257 1.555533 GGTAGTGGAGAGGGTGGAAAG 59.444 57.143 0.00 0.00 0.00 2.62
2191 2258 1.132657 TGGTAGTGGAGAGGGTGGAAA 60.133 52.381 0.00 0.00 0.00 3.13
2192 2259 0.490017 TGGTAGTGGAGAGGGTGGAA 59.510 55.000 0.00 0.00 0.00 3.53
2204 2271 1.144057 GAGCGGTGGGATGGTAGTG 59.856 63.158 0.00 0.00 0.00 2.74
2215 2284 0.606401 AATTGGTGTGGAGAGCGGTG 60.606 55.000 0.00 0.00 0.00 4.94
2216 2285 0.321653 GAATTGGTGTGGAGAGCGGT 60.322 55.000 0.00 0.00 0.00 5.68
2222 2291 1.026718 GGGCGAGAATTGGTGTGGAG 61.027 60.000 0.00 0.00 0.00 3.86
2234 2303 2.358247 GCGGTGAAAAGGGCGAGA 60.358 61.111 0.00 0.00 0.00 4.04
2252 2321 0.250424 TCATATGGGTCCATGCAGCG 60.250 55.000 12.42 0.00 37.82 5.18
2255 2324 3.979911 ACTTTTCATATGGGTCCATGCA 58.020 40.909 12.42 0.00 37.82 3.96
2269 2338 1.673920 GCCGTCTCCAACAACTTTTCA 59.326 47.619 0.00 0.00 0.00 2.69
2276 2345 2.342279 CTCCGCCGTCTCCAACAA 59.658 61.111 0.00 0.00 0.00 2.83
2288 2357 2.764128 TGGATCCTCCACCTCCGC 60.764 66.667 14.23 0.00 42.67 5.54
2290 2359 0.263172 TCTCTGGATCCTCCACCTCC 59.737 60.000 14.23 0.00 42.67 4.30
2300 2369 1.144936 CCGCCACCTTCTCTGGATC 59.855 63.158 0.00 0.00 0.00 3.36
2316 2385 1.521681 GAGTTGATCTTCCGGGCCG 60.522 63.158 21.46 21.46 0.00 6.13
2317 2386 1.521681 CGAGTTGATCTTCCGGGCC 60.522 63.158 0.00 0.00 0.00 5.80
2318 2387 1.521681 CCGAGTTGATCTTCCGGGC 60.522 63.158 0.00 0.00 36.81 6.13
2355 2425 1.043022 CTTTGCCTTTGCCTTGAGGT 58.957 50.000 0.00 0.00 37.57 3.85
2362 2432 1.598517 CCCATCCTTTGCCTTTGCC 59.401 57.895 0.00 0.00 36.33 4.52
2365 2435 0.906282 CTGCCCCATCCTTTGCCTTT 60.906 55.000 0.00 0.00 0.00 3.11
2377 2447 4.594854 TTTTCGCTGCCTGCCCCA 62.595 61.111 0.00 0.00 38.78 4.96
2378 2448 3.752339 CTTTTCGCTGCCTGCCCC 61.752 66.667 0.00 0.00 38.78 5.80
2379 2449 1.598701 ATTCTTTTCGCTGCCTGCCC 61.599 55.000 0.00 0.00 38.78 5.36
2383 2453 1.885871 GCCATTCTTTTCGCTGCCT 59.114 52.632 0.00 0.00 0.00 4.75
2387 2457 0.798776 CAGTCGCCATTCTTTTCGCT 59.201 50.000 0.00 0.00 0.00 4.93
2388 2458 0.179189 CCAGTCGCCATTCTTTTCGC 60.179 55.000 0.00 0.00 0.00 4.70
2391 2461 1.586154 CCGCCAGTCGCCATTCTTTT 61.586 55.000 0.00 0.00 36.73 2.27
2467 2546 2.751436 GGTGTGCGCATGGATGGT 60.751 61.111 15.91 0.00 0.00 3.55
2468 2547 2.751036 TGGTGTGCGCATGGATGG 60.751 61.111 15.91 0.00 0.00 3.51
2469 2548 2.486504 GTGGTGTGCGCATGGATG 59.513 61.111 15.91 0.00 0.00 3.51
2470 2549 2.751436 GGTGGTGTGCGCATGGAT 60.751 61.111 15.91 0.00 0.00 3.41
2473 2552 3.740397 CAGGGTGGTGTGCGCATG 61.740 66.667 15.91 0.00 0.00 4.06
2485 2564 2.690881 TATTGCTCCGGCCAGGGT 60.691 61.111 2.24 0.00 41.52 4.34
2486 2565 2.203209 GTATTGCTCCGGCCAGGG 60.203 66.667 2.24 0.00 41.52 4.45
2501 2580 2.584031 TGTAGAAGTAGGGAGGCTGGTA 59.416 50.000 0.00 0.00 0.00 3.25


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.