Multiple sequence alignment - TraesCS2A01G219600

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS2A01G219600 chr2A 100.000 4092 0 0 1 4092 207052424 207056515 0 7557
1 TraesCS2A01G219600 chr2D 92.114 4172 142 58 1 4092 193116841 193120905 0 5709
2 TraesCS2A01G219600 chr2B 90.697 2741 120 49 1419 4092 249263184 249265856 0 3524
3 TraesCS2A01G219600 chr2B 90.204 1419 77 29 1 1377 249261694 249263092 0 1794


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS2A01G219600 chr2A 207052424 207056515 4091 False 7557 7557 100.0000 1 4092 1 chr2A.!!$F1 4091
1 TraesCS2A01G219600 chr2D 193116841 193120905 4064 False 5709 5709 92.1140 1 4092 1 chr2D.!!$F1 4091
2 TraesCS2A01G219600 chr2B 249261694 249265856 4162 False 2659 3524 90.4505 1 4092 2 chr2B.!!$F1 4091

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
796 842 1.069432 CGCATGCATCACTGATTAGGC 60.069 52.381 19.57 0.0 0.0 3.93 F
1218 1272 0.460109 CACCGCCTTGATCGATGTCA 60.460 55.000 0.54 0.0 0.0 3.58 F
2024 2191 1.000274 GGAAAAGCTGCAATGTCGGTT 60.000 47.619 1.02 0.0 0.0 4.44 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2358 2534 0.248843 GTCAGGGTCTGAAGCTCTGG 59.751 60.0 0.0 0.0 42.46 3.86 R
2498 2684 0.325671 TGGAGAAATCCCTCTCGGCT 60.326 55.0 0.0 0.0 42.46 5.52 R
3994 4234 0.109153 TGGCAGACAGACAGTTGCAT 59.891 50.0 0.0 0.0 36.56 3.96 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
130 134 1.585002 GCGCGTTGTGAGCAAAACA 60.585 52.632 8.43 0.00 43.66 2.83
144 148 4.413495 GCAAAACACGTTATTGCCTCTA 57.587 40.909 15.33 0.00 42.70 2.43
200 228 4.771356 GTGTCGCAGCGAGCCGTA 62.771 66.667 20.23 0.00 41.38 4.02
201 229 4.771356 TGTCGCAGCGAGCCGTAC 62.771 66.667 20.23 6.41 41.38 3.67
350 382 2.031437 GCGTGAAGGAATTCTCATGCTC 59.969 50.000 24.28 6.68 40.69 4.26
355 387 5.860716 GTGAAGGAATTCTCATGCTCAAAAC 59.139 40.000 5.23 0.00 0.00 2.43
363 395 5.022282 TCTCATGCTCAAAACGATATCCA 57.978 39.130 0.00 0.00 0.00 3.41
364 396 5.427378 TCTCATGCTCAAAACGATATCCAA 58.573 37.500 0.00 0.00 0.00 3.53
365 397 6.057533 TCTCATGCTCAAAACGATATCCAAT 58.942 36.000 0.00 0.00 0.00 3.16
366 398 6.543465 TCTCATGCTCAAAACGATATCCAATT 59.457 34.615 0.00 0.00 0.00 2.32
413 452 1.159713 TTCAGAAGCAGCACACCACG 61.160 55.000 0.00 0.00 0.00 4.94
616 657 3.099905 AGCTGAGCCACTAATCTACACA 58.900 45.455 0.00 0.00 0.00 3.72
617 658 3.515502 AGCTGAGCCACTAATCTACACAA 59.484 43.478 0.00 0.00 0.00 3.33
737 778 2.575525 CTCTGCTCGCACGACTCG 60.576 66.667 0.00 0.00 0.00 4.18
765 806 4.666237 CATTTTCCATCCGCTTTCTTCTC 58.334 43.478 0.00 0.00 0.00 2.87
796 842 1.069432 CGCATGCATCACTGATTAGGC 60.069 52.381 19.57 0.00 0.00 3.93
797 843 1.951602 GCATGCATCACTGATTAGGCA 59.048 47.619 14.21 5.29 35.54 4.75
815 861 2.322355 CAATGGTGCACTAGCTAGCT 57.678 50.000 23.12 23.12 42.74 3.32
974 1020 4.038642 GCTAATACCTTCACAGAGCTAGCT 59.961 45.833 19.45 19.45 0.00 3.32
1131 1181 1.800805 TCGTCTTCGTCTTCTACCGT 58.199 50.000 0.00 0.00 38.33 4.83
1192 1242 2.362077 GCTCTGGAGAGGTGAGATTCTC 59.638 54.545 6.73 6.73 42.29 2.87
1218 1272 0.460109 CACCGCCTTGATCGATGTCA 60.460 55.000 0.54 0.00 0.00 3.58
1222 1276 1.202348 CGCCTTGATCGATGTCAGTCT 60.202 52.381 0.54 0.00 0.00 3.24
1223 1277 2.200067 GCCTTGATCGATGTCAGTCTG 58.800 52.381 0.54 0.00 0.00 3.51
1224 1278 2.417924 GCCTTGATCGATGTCAGTCTGT 60.418 50.000 0.54 0.00 0.00 3.41
1252 1310 2.093869 TCCGGCTCGCTGTTTTATAACT 60.094 45.455 0.00 0.00 35.24 2.24
1264 1326 9.845305 CGCTGTTTTATAACTTATACTTACTGC 57.155 33.333 0.00 0.00 35.24 4.40
1279 1341 6.299805 ACTTACTGCACCATGATTCTCTTA 57.700 37.500 0.00 0.00 0.00 2.10
1394 1475 2.086869 AGTGGCACATAGTTCATGCAC 58.913 47.619 21.41 0.00 44.52 4.57
1400 1481 3.120199 GCACATAGTTCATGCACGAGTTT 60.120 43.478 0.00 0.00 38.29 2.66
1442 1558 1.419012 AGCTAATGCATGCAGGCTCTA 59.581 47.619 28.13 13.97 42.74 2.43
1464 1580 1.490910 GGCCTAGTTGCCCAATAGTCT 59.509 52.381 0.00 0.00 46.11 3.24
1465 1581 2.485657 GGCCTAGTTGCCCAATAGTCTC 60.486 54.545 0.00 0.00 46.11 3.36
1567 1685 2.161211 GTGTGCTTTGAGATCTTCCAGC 59.839 50.000 12.00 12.00 33.63 4.85
1632 1750 2.985456 CTCTCCCTGAAGCCGCTT 59.015 61.111 4.98 4.98 0.00 4.68
1641 1761 3.308530 CCTGAAGCCGCTTAAAAACTTG 58.691 45.455 5.38 0.00 0.00 3.16
1661 1806 8.687824 AACTTGCAACTTTCGGATTATAAATG 57.312 30.769 0.00 0.00 0.00 2.32
1809 1957 2.081462 CAACCGGTGGTTACCTTCATC 58.919 52.381 8.52 0.00 45.01 2.92
1810 1958 1.652947 ACCGGTGGTTACCTTCATCT 58.347 50.000 6.12 0.00 45.22 2.90
1812 1960 3.175594 ACCGGTGGTTACCTTCATCTTA 58.824 45.455 6.12 0.00 45.22 2.10
1879 2032 4.096532 TCTGCTCGATACTTGTCCTGTAAG 59.903 45.833 0.00 0.00 0.00 2.34
2013 2180 1.455383 AAGTGTGGGCGGAAAAGCTG 61.455 55.000 0.00 0.00 37.29 4.24
2024 2191 1.000274 GGAAAAGCTGCAATGTCGGTT 60.000 47.619 1.02 0.00 0.00 4.44
2025 2192 2.227865 GGAAAAGCTGCAATGTCGGTTA 59.772 45.455 1.02 0.00 0.00 2.85
2026 2193 2.989422 AAAGCTGCAATGTCGGTTAC 57.011 45.000 1.02 0.00 0.00 2.50
2029 2196 2.504367 AGCTGCAATGTCGGTTACTTT 58.496 42.857 1.02 0.00 0.00 2.66
2031 2198 2.414161 GCTGCAATGTCGGTTACTTTCC 60.414 50.000 0.00 0.00 0.00 3.13
2034 2201 3.886505 TGCAATGTCGGTTACTTTCCTTT 59.113 39.130 0.00 0.00 0.00 3.11
2232 2407 1.992277 AGCAACAGCTCCTCCGGAT 60.992 57.895 3.57 0.00 31.68 4.18
2237 2412 1.456518 CAGCTCCTCCGGATCAGGA 60.457 63.158 14.29 14.29 37.75 3.86
2358 2534 9.696917 ATACACTCAAAATTCAGGTTCATTTTC 57.303 29.630 0.00 0.00 31.54 2.29
2404 2590 4.573900 TGCAACTTGTTGATGGTTTTTGT 58.426 34.783 16.57 0.00 0.00 2.83
2450 2636 5.647658 CACTTCCAAGCTTATGAATACCACA 59.352 40.000 0.00 0.00 0.00 4.17
2498 2684 4.228567 TTCGTGGTGGCTGTCGCA 62.229 61.111 0.00 0.00 38.10 5.10
2543 2729 4.593206 TGGAAGATCGGCTGGAATATTAGT 59.407 41.667 0.00 0.00 0.00 2.24
2574 2762 3.680642 TCATCTACAGCGTACGTAACC 57.319 47.619 17.90 0.00 0.00 2.85
2583 2771 0.168788 CGTACGTAACCGAGCCTCAA 59.831 55.000 7.22 0.00 37.88 3.02
2663 2851 2.512286 ATGCAGGGCGTGATCGTG 60.512 61.111 12.03 0.00 39.49 4.35
2738 2926 3.274586 CTCGCCATGTCCATGCCG 61.275 66.667 4.42 4.42 40.51 5.69
2813 3001 1.941999 GCCTAGGAAGGTACGTGCGT 61.942 60.000 14.75 2.05 45.64 5.24
2814 3002 0.179145 CCTAGGAAGGTACGTGCGTG 60.179 60.000 1.05 0.00 38.19 5.34
2815 3003 0.801067 CTAGGAAGGTACGTGCGTGC 60.801 60.000 7.55 5.86 31.45 5.34
2816 3004 2.531927 TAGGAAGGTACGTGCGTGCG 62.532 60.000 7.55 0.00 31.45 5.34
2826 3014 2.046796 TGCGTGCGCCCAGAATTA 60.047 55.556 14.16 0.00 41.09 1.40
2834 3022 1.869767 GCGCCCAGAATTACTCATGAG 59.130 52.381 21.37 21.37 0.00 2.90
2862 3050 9.760660 CTTCATAAATGTGCAACTAAACTCTAC 57.239 33.333 0.00 0.00 38.04 2.59
2868 3056 5.696822 TGTGCAACTAAACTCTACTCTACG 58.303 41.667 0.00 0.00 38.04 3.51
2869 3057 5.240183 TGTGCAACTAAACTCTACTCTACGT 59.760 40.000 0.00 0.00 38.04 3.57
2875 3063 8.594687 CAACTAAACTCTACTCTACGTCTCTAC 58.405 40.741 0.00 0.00 0.00 2.59
2965 3155 1.340088 TTGGAGGCCTGTACAACGTA 58.660 50.000 12.00 0.00 0.00 3.57
2979 3169 2.299521 CAACGTACTGTGGGGGAAAAA 58.700 47.619 0.00 0.00 0.00 1.94
3155 3345 3.767673 GTCAGGACATACTACTGGTTCCA 59.232 47.826 0.00 0.00 33.19 3.53
3174 3368 2.287788 CCAGACTGTGTTGGAATGCAAC 60.288 50.000 10.77 10.77 36.55 4.17
3418 3635 0.463620 TTGCTTTTTGGGTCACTGCC 59.536 50.000 0.00 0.00 0.00 4.85
3469 3690 2.225068 AGTCCTGACGGCGAAATATG 57.775 50.000 16.62 0.00 36.20 1.78
3534 3765 6.362283 ACAATATCTTGCGTAAACAAACAAGC 59.638 34.615 0.00 0.00 39.45 4.01
3586 3817 3.031736 GTGGAGCACATAGGAGGAGTAA 58.968 50.000 0.00 0.00 34.08 2.24
3587 3818 3.643792 GTGGAGCACATAGGAGGAGTAAT 59.356 47.826 0.00 0.00 34.08 1.89
3588 3819 4.833380 GTGGAGCACATAGGAGGAGTAATA 59.167 45.833 0.00 0.00 34.08 0.98
3591 3822 7.343316 GTGGAGCACATAGGAGGAGTAATATAT 59.657 40.741 0.00 0.00 34.08 0.86
3592 3823 8.566109 TGGAGCACATAGGAGGAGTAATATATA 58.434 37.037 0.00 0.00 0.00 0.86
3593 3824 9.594936 GGAGCACATAGGAGGAGTAATATATAT 57.405 37.037 0.00 0.00 0.00 0.86
3707 3938 3.365265 GCCCTGCCGTGGAACAAG 61.365 66.667 0.00 0.00 44.16 3.16
3763 3997 4.326826 CTGAGTTGGAATTAGGAACTGCA 58.673 43.478 0.00 0.00 41.52 4.41
3764 3998 4.922206 TGAGTTGGAATTAGGAACTGCAT 58.078 39.130 0.00 0.00 41.52 3.96
3765 3999 4.943705 TGAGTTGGAATTAGGAACTGCATC 59.056 41.667 0.00 0.00 41.52 3.91
3766 4000 5.184892 AGTTGGAATTAGGAACTGCATCT 57.815 39.130 0.00 0.00 41.52 2.90
3780 4014 3.196463 CTGCATCTCATCTCAGTGGAAC 58.804 50.000 0.00 0.00 0.00 3.62
3803 4037 2.357327 TCCCATGTCGTGTAGAAACG 57.643 50.000 0.00 0.00 44.92 3.60
3848 4082 2.091588 CGGTTACACGTCGGATCAAAAG 59.908 50.000 0.00 0.00 0.00 2.27
3939 4179 2.202851 AGCTGCCGCTCAAGATCG 60.203 61.111 0.00 0.00 45.15 3.69
3940 4180 3.934684 GCTGCCGCTCAAGATCGC 61.935 66.667 0.00 0.00 0.00 4.58
3998 4238 2.460275 CCAACGCCGATCGAATGCA 61.460 57.895 18.66 0.00 41.67 3.96
4010 4250 2.407090 TCGAATGCAACTGTCTGTCTG 58.593 47.619 0.00 0.00 0.00 3.51
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
130 134 4.839121 TCCAACAATAGAGGCAATAACGT 58.161 39.130 0.00 0.00 0.00 3.99
144 148 6.548321 TCAAACTATACTGGGTTCCAACAAT 58.452 36.000 0.00 0.00 30.80 2.71
277 309 6.071728 CCATCTTTACCTCTGAAATGCAAAGT 60.072 38.462 0.00 0.00 0.00 2.66
350 382 8.840321 AGGTCTGATTAATTGGATATCGTTTTG 58.160 33.333 0.00 0.00 0.00 2.44
355 387 6.369890 CACCAGGTCTGATTAATTGGATATCG 59.630 42.308 8.30 0.00 0.00 2.92
363 395 3.758554 GTGTGCACCAGGTCTGATTAATT 59.241 43.478 15.69 0.00 0.00 1.40
364 396 3.009473 AGTGTGCACCAGGTCTGATTAAT 59.991 43.478 15.69 0.00 0.00 1.40
365 397 2.371841 AGTGTGCACCAGGTCTGATTAA 59.628 45.455 15.69 0.00 0.00 1.40
366 398 1.977854 AGTGTGCACCAGGTCTGATTA 59.022 47.619 15.69 0.00 0.00 1.75
413 452 1.672881 GATACACAAGGCAGGTGCATC 59.327 52.381 4.01 7.12 44.36 3.91
526 567 1.154112 GCATGTAACAAACCGGGCG 60.154 57.895 6.32 0.00 0.00 6.13
531 572 3.900941 CAGAGGTTGCATGTAACAAACC 58.099 45.455 25.11 15.63 35.23 3.27
737 778 0.101219 GCGGATGGAAAATGCTGGAC 59.899 55.000 0.00 0.00 0.00 4.02
796 842 2.322355 AGCTAGCTAGTGCACCATTG 57.678 50.000 17.69 2.33 42.74 2.82
797 843 2.224161 GCTAGCTAGCTAGTGCACCATT 60.224 50.000 39.05 11.12 45.67 3.16
812 858 2.427245 CCCAGGTACGCAGCTAGCT 61.427 63.158 12.68 12.68 42.61 3.32
813 859 2.107141 CCCAGGTACGCAGCTAGC 59.893 66.667 6.62 6.62 40.87 3.42
814 860 2.017559 GACCCCAGGTACGCAGCTAG 62.018 65.000 0.00 0.00 35.25 3.42
815 861 2.038329 ACCCCAGGTACGCAGCTA 59.962 61.111 0.00 0.00 32.11 3.32
974 1020 7.992608 TCCTGATTTTGCTAGTATATTTCTGCA 59.007 33.333 0.00 0.00 0.00 4.41
1146 1196 0.387878 CGATAGGGATGAGCACGAGC 60.388 60.000 0.00 0.00 42.56 5.03
1149 1199 0.032678 AAGCGATAGGGATGAGCACG 59.967 55.000 0.00 0.00 0.00 5.34
1192 1242 0.165944 GATCAAGGCGGTGTCAAACG 59.834 55.000 0.00 0.00 0.00 3.60
1218 1272 1.598130 GCCGGACAAGCAACAGACT 60.598 57.895 5.05 0.00 0.00 3.24
1222 1276 2.664851 CGAGCCGGACAAGCAACA 60.665 61.111 5.05 0.00 0.00 3.33
1223 1277 4.090057 GCGAGCCGGACAAGCAAC 62.090 66.667 5.05 0.00 0.00 4.17
1224 1278 4.314440 AGCGAGCCGGACAAGCAA 62.314 61.111 5.05 0.00 0.00 3.91
1252 1310 8.023021 AGAGAATCATGGTGCAGTAAGTATAA 57.977 34.615 0.00 0.00 37.82 0.98
1261 1323 4.554134 CGCAATAAGAGAATCATGGTGCAG 60.554 45.833 0.00 0.00 37.82 4.41
1264 1326 3.313249 TGCGCAATAAGAGAATCATGGTG 59.687 43.478 8.16 0.00 37.82 4.17
1394 1475 6.683090 TTCTGAAACAAAACAACAAACTCG 57.317 33.333 0.00 0.00 0.00 4.18
1400 1481 6.928492 AGCTTTCTTTCTGAAACAAAACAACA 59.072 30.769 0.00 0.00 39.50 3.33
1464 1580 6.767902 GCTTGATTATTATTCTCCACACAGGA 59.232 38.462 0.00 0.00 46.75 3.86
1465 1581 6.769822 AGCTTGATTATTATTCTCCACACAGG 59.230 38.462 0.00 0.00 39.47 4.00
1641 1761 9.434559 GTAAGTCATTTATAATCCGAAAGTTGC 57.565 33.333 0.00 0.00 0.00 4.17
1809 1957 6.485313 TGAATTACCCAATTATGACCGCTAAG 59.515 38.462 0.00 0.00 34.44 2.18
1810 1958 6.358178 TGAATTACCCAATTATGACCGCTAA 58.642 36.000 0.00 0.00 34.44 3.09
1812 1960 4.787551 TGAATTACCCAATTATGACCGCT 58.212 39.130 0.00 0.00 34.44 5.52
1847 1999 3.561143 AGTATCGAGCAGAGGTCAGAAT 58.439 45.455 0.00 0.00 0.00 2.40
1898 2052 4.782019 TGTACTGGTTGATTTTGATGGC 57.218 40.909 0.00 0.00 0.00 4.40
1904 2058 6.435277 AGAGAATGCATGTACTGGTTGATTTT 59.565 34.615 0.00 0.00 0.00 1.82
1913 2074 3.181503 GCCAACAGAGAATGCATGTACTG 60.182 47.826 18.92 18.92 0.00 2.74
1998 2165 2.158561 ATTGCAGCTTTTCCGCCCAC 62.159 55.000 0.00 0.00 0.00 4.61
2002 2169 1.067199 CGACATTGCAGCTTTTCCGC 61.067 55.000 0.00 0.00 0.00 5.54
2013 2180 4.473199 GAAAGGAAAGTAACCGACATTGC 58.527 43.478 0.00 0.00 0.00 3.56
2024 2191 9.074576 GAATTTGTTCTTAGGGAAAGGAAAGTA 57.925 33.333 0.00 0.00 35.51 2.24
2025 2192 7.015292 GGAATTTGTTCTTAGGGAAAGGAAAGT 59.985 37.037 0.00 0.00 35.51 2.66
2026 2193 7.378966 GGAATTTGTTCTTAGGGAAAGGAAAG 58.621 38.462 0.00 0.00 35.51 2.62
2029 2196 5.075900 AGGGAATTTGTTCTTAGGGAAAGGA 59.924 40.000 0.00 0.00 35.51 3.36
2031 2198 5.775195 ACAGGGAATTTGTTCTTAGGGAAAG 59.225 40.000 0.00 0.00 35.51 2.62
2034 2201 4.352595 TCACAGGGAATTTGTTCTTAGGGA 59.647 41.667 0.00 0.00 0.00 4.20
2232 2407 2.904434 GGTTCTTGGAGTAGGTTCCTGA 59.096 50.000 1.12 0.00 38.12 3.86
2237 2412 2.372172 CCACTGGTTCTTGGAGTAGGTT 59.628 50.000 0.00 0.00 34.46 3.50
2358 2534 0.248843 GTCAGGGTCTGAAGCTCTGG 59.751 60.000 0.00 0.00 42.46 3.86
2404 2590 1.306911 TCTATCAGTGGCCCCTGCA 60.307 57.895 10.85 0.00 40.13 4.41
2450 2636 1.881709 CGCGCATGAGATCTGCAGT 60.882 57.895 14.67 0.42 39.64 4.40
2498 2684 0.325671 TGGAGAAATCCCTCTCGGCT 60.326 55.000 0.00 0.00 42.46 5.52
2501 2687 2.419297 CCACTTGGAGAAATCCCTCTCG 60.419 54.545 0.00 0.00 42.46 4.04
2543 2729 1.807142 CTGTAGATGATAGCGGCGAGA 59.193 52.381 12.98 0.00 0.00 4.04
2574 2762 3.963665 TGAACATTGTTTTTGAGGCTCG 58.036 40.909 10.42 0.00 0.00 5.03
2614 2802 4.381292 CCCATGGAGAAGCAAATCAACTTC 60.381 45.833 15.22 0.00 42.13 3.01
2663 2851 0.454957 TGTAGTACGAAAGCGCGGTC 60.455 55.000 12.91 1.96 42.48 4.79
2738 2926 4.502016 TGATTGTGAAGATCAGAGTGAGC 58.498 43.478 0.00 0.00 31.96 4.26
2813 3001 1.209261 TCATGAGTAATTCTGGGCGCA 59.791 47.619 10.83 2.47 0.00 6.09
2814 3002 1.869767 CTCATGAGTAATTCTGGGCGC 59.130 52.381 14.95 0.00 0.00 6.53
2815 3003 3.126831 GTCTCATGAGTAATTCTGGGCG 58.873 50.000 21.92 0.00 0.00 6.13
2816 3004 4.414337 AGTCTCATGAGTAATTCTGGGC 57.586 45.455 21.92 0.00 0.00 5.36
2826 3014 6.175471 TGCACATTTATGAAGTCTCATGAGT 58.825 36.000 21.92 3.10 42.48 3.41
2834 3022 8.507249 AGAGTTTAGTTGCACATTTATGAAGTC 58.493 33.333 0.00 0.00 0.00 3.01
2965 3155 1.219213 TCCATGTTTTTCCCCCACAGT 59.781 47.619 0.00 0.00 0.00 3.55
2979 3169 2.557056 TCGTCGTCTTTTCTCTCCATGT 59.443 45.455 0.00 0.00 0.00 3.21
3139 3329 4.220821 CACAGTCTGGAACCAGTAGTATGT 59.779 45.833 18.60 13.87 43.96 2.29
3174 3368 2.174107 CAGTTCACGGTGCATGCG 59.826 61.111 14.09 0.76 0.00 4.73
3469 3690 4.656041 CAGTAGCCACTGTAGTACGTAAC 58.344 47.826 3.89 0.00 46.03 2.50
3534 3765 1.066358 TGATCTGGAGCTGACTTGCTG 60.066 52.381 0.00 0.00 44.17 4.41
3707 3938 1.453155 ATCAATCAACAGTGGGCGAC 58.547 50.000 0.00 0.00 0.00 5.19
3763 3997 4.499183 GAAACGTTCCACTGAGATGAGAT 58.501 43.478 0.00 0.00 0.00 2.75
3764 3998 3.914312 GAAACGTTCCACTGAGATGAGA 58.086 45.455 0.00 0.00 0.00 3.27
3780 4014 2.357327 TCTACACGACATGGGAAACG 57.643 50.000 0.00 0.00 0.00 3.60
3803 4037 0.391661 ACATGACATGCACGAGTCCC 60.392 55.000 15.49 0.00 33.89 4.46
3994 4234 0.109153 TGGCAGACAGACAGTTGCAT 59.891 50.000 0.00 0.00 36.56 3.96
4059 4299 1.133513 ACAAGGAAACAGGCATGGACA 60.134 47.619 2.31 0.00 0.00 4.02


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.