Multiple sequence alignment - TraesCS2A01G219400

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS2A01G219400 chr2A 100.000 6696 0 0 1 6696 206859188 206852493 0.000000e+00 12366.0
1 TraesCS2A01G219400 chr2B 96.662 3595 64 17 2499 6083 249211056 249207508 0.000000e+00 5923.0
2 TraesCS2A01G219400 chr2B 96.117 2395 77 13 112 2502 249213642 249211260 0.000000e+00 3893.0
3 TraesCS2A01G219400 chr2B 94.382 178 6 4 6202 6378 249202503 249202329 3.080000e-68 270.0
4 TraesCS2A01G219400 chr2B 90.598 117 7 2 6082 6195 249207349 249207234 1.160000e-32 152.0
5 TraesCS2A01G219400 chr2D 97.902 2574 39 5 2499 5061 192996960 192994391 0.000000e+00 4440.0
6 TraesCS2A01G219400 chr2D 97.623 2398 45 9 112 2502 192999554 192997162 0.000000e+00 4102.0
7 TraesCS2A01G219400 chr2D 97.828 1289 27 1 5077 6365 192994405 192993118 0.000000e+00 2224.0
8 TraesCS2A01G219400 chr5D 96.685 181 6 0 4178 4358 468170651 468170471 1.090000e-77 302.0
9 TraesCS2A01G219400 chr6A 96.667 180 6 0 4179 4358 153373069 153372890 3.930000e-77 300.0
10 TraesCS2A01G219400 chr4D 96.111 180 7 0 4179 4358 482703444 482703623 1.830000e-75 294.0
11 TraesCS2A01G219400 chr3D 96.111 180 7 0 4179 4358 422517613 422517792 1.830000e-75 294.0
12 TraesCS2A01G219400 chr5B 96.089 179 7 0 4180 4358 574956625 574956447 6.570000e-75 292.0
13 TraesCS2A01G219400 chr5B 91.176 204 17 1 4175 4377 126245084 126245287 6.610000e-70 276.0
14 TraesCS2A01G219400 chr7A 95.604 182 6 2 4179 4358 83785017 83784836 2.360000e-74 291.0
15 TraesCS2A01G219400 chr3A 96.053 76 3 0 6572 6647 117291506 117291431 2.540000e-24 124.0
16 TraesCS2A01G219400 chr7B 80.899 89 12 5 34 120 411044680 411044765 1.560000e-06 65.8


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS2A01G219400 chr2A 206852493 206859188 6695 True 12366.000000 12366 100.000000 1 6696 1 chr2A.!!$R1 6695
1 TraesCS2A01G219400 chr2B 249207234 249213642 6408 True 3322.666667 5923 94.459000 112 6195 3 chr2B.!!$R2 6083
2 TraesCS2A01G219400 chr2D 192993118 192999554 6436 True 3588.666667 4440 97.784333 112 6365 3 chr2D.!!$R1 6253

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
95 96 0.035458 AGAAAGACCTGTTGGGAGCG 59.965 55.000 0.00 0.0 38.76 5.03 F
345 346 0.106708 AGAGGCAGCGTGAAGAACAA 59.893 50.000 0.00 0.0 0.00 2.83 F
877 879 1.422531 TCCTGGTTTGCTTTTGCCAT 58.577 45.000 0.00 0.0 46.87 4.40 F
1565 1568 1.122019 AGAAGACAACCAGACCCGCT 61.122 55.000 0.00 0.0 0.00 5.52 F
2427 2436 2.001812 AGAGTGATGTCATCGTGTGC 57.998 50.000 8.29 0.0 0.00 4.57 F
3499 3717 2.403259 TGATGCGTAGATTGGTATGCG 58.597 47.619 0.00 0.0 37.69 4.73 F
4192 4413 1.780309 TCTTTTGAAGGGGAGCCTTGA 59.220 47.619 0.00 0.0 0.00 3.02 F
5072 5302 1.420138 GGACAAGGACAAGGACAAGGA 59.580 52.381 0.00 0.0 0.00 3.36 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1159 1161 4.828829 CCTAGAACCAGTACATTTCGGTT 58.171 43.478 0.00 0.0 44.34 4.44 R
1525 1528 7.872993 TCTTCTTTCTCTGATACAAAATGACGT 59.127 33.333 0.00 0.0 0.00 4.34 R
2406 2415 2.346847 GCACACGATGACATCACTCTTC 59.653 50.000 15.58 0.0 0.00 2.87 R
3333 3551 0.371645 GTGCAAGTCAGATGTAGCGC 59.628 55.000 0.00 0.0 0.00 5.92 R
3708 3926 1.379044 GGGGTCCAGCACCTGAATG 60.379 63.158 0.00 0.0 45.95 2.67 R
5070 5300 1.420138 TCCTTGTCCTTGTCCTTGTCC 59.580 52.381 0.00 0.0 0.00 4.02 R
5623 5859 2.435372 TTCTTTGCCAGTTCCAGTGT 57.565 45.000 0.00 0.0 0.00 3.55 R
6561 6960 0.035152 GTCCAGTGCATCCACATCCA 60.035 55.000 0.00 0.0 44.53 3.41 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
35 36 5.499139 AAAACAAGTTTCTGAAGATGCGA 57.501 34.783 0.00 0.00 31.45 5.10
36 37 4.474226 AACAAGTTTCTGAAGATGCGAC 57.526 40.909 0.00 0.00 0.00 5.19
37 38 3.733337 ACAAGTTTCTGAAGATGCGACT 58.267 40.909 0.00 0.00 0.00 4.18
38 39 3.496130 ACAAGTTTCTGAAGATGCGACTG 59.504 43.478 0.00 0.00 0.00 3.51
39 40 3.667497 AGTTTCTGAAGATGCGACTGA 57.333 42.857 0.00 0.00 0.00 3.41
40 41 3.995199 AGTTTCTGAAGATGCGACTGAA 58.005 40.909 0.00 0.00 0.00 3.02
41 42 3.743396 AGTTTCTGAAGATGCGACTGAAC 59.257 43.478 0.00 0.00 0.00 3.18
42 43 2.370281 TCTGAAGATGCGACTGAACC 57.630 50.000 0.00 0.00 0.00 3.62
43 44 0.994995 CTGAAGATGCGACTGAACCG 59.005 55.000 0.00 0.00 0.00 4.44
44 45 0.317160 TGAAGATGCGACTGAACCGT 59.683 50.000 0.00 0.00 0.00 4.83
45 46 1.270094 TGAAGATGCGACTGAACCGTT 60.270 47.619 0.00 0.00 0.00 4.44
46 47 1.798813 GAAGATGCGACTGAACCGTTT 59.201 47.619 0.00 0.00 0.00 3.60
47 48 1.878953 AGATGCGACTGAACCGTTTT 58.121 45.000 0.00 0.00 0.00 2.43
48 49 2.218603 AGATGCGACTGAACCGTTTTT 58.781 42.857 0.00 0.00 0.00 1.94
72 73 2.871828 CCGGCGCGGTAAAAATGT 59.128 55.556 8.83 0.00 42.73 2.71
73 74 1.210672 CCGGCGCGGTAAAAATGTT 59.789 52.632 8.83 0.00 42.73 2.71
74 75 0.387494 CCGGCGCGGTAAAAATGTTT 60.387 50.000 8.83 0.00 42.73 2.83
75 76 0.705639 CGGCGCGGTAAAAATGTTTG 59.294 50.000 8.83 0.00 0.00 2.93
76 77 1.663445 CGGCGCGGTAAAAATGTTTGA 60.663 47.619 8.83 0.00 0.00 2.69
77 78 1.982913 GGCGCGGTAAAAATGTTTGAG 59.017 47.619 8.83 0.00 0.00 3.02
78 79 2.350964 GGCGCGGTAAAAATGTTTGAGA 60.351 45.455 8.83 0.00 0.00 3.27
79 80 3.301706 GCGCGGTAAAAATGTTTGAGAA 58.698 40.909 8.83 0.00 0.00 2.87
80 81 3.731717 GCGCGGTAAAAATGTTTGAGAAA 59.268 39.130 8.83 0.00 0.00 2.52
81 82 4.143618 GCGCGGTAAAAATGTTTGAGAAAG 60.144 41.667 8.83 0.00 0.00 2.62
82 83 5.209240 CGCGGTAAAAATGTTTGAGAAAGA 58.791 37.500 0.00 0.00 0.00 2.52
83 84 5.115021 CGCGGTAAAAATGTTTGAGAAAGAC 59.885 40.000 0.00 0.00 0.00 3.01
84 85 5.401376 GCGGTAAAAATGTTTGAGAAAGACC 59.599 40.000 0.00 0.00 0.00 3.85
85 86 6.734871 GCGGTAAAAATGTTTGAGAAAGACCT 60.735 38.462 0.00 0.00 0.00 3.85
86 87 6.636850 CGGTAAAAATGTTTGAGAAAGACCTG 59.363 38.462 0.00 0.00 0.00 4.00
87 88 7.489160 GGTAAAAATGTTTGAGAAAGACCTGT 58.511 34.615 0.00 0.00 0.00 4.00
88 89 7.979537 GGTAAAAATGTTTGAGAAAGACCTGTT 59.020 33.333 0.00 0.00 0.00 3.16
89 90 7.832503 AAAAATGTTTGAGAAAGACCTGTTG 57.167 32.000 0.00 0.00 0.00 3.33
90 91 5.520376 AATGTTTGAGAAAGACCTGTTGG 57.480 39.130 0.00 0.00 39.83 3.77
91 92 3.287222 TGTTTGAGAAAGACCTGTTGGG 58.713 45.455 0.00 0.00 41.89 4.12
92 93 3.053991 TGTTTGAGAAAGACCTGTTGGGA 60.054 43.478 0.00 0.00 38.76 4.37
93 94 3.492102 TTGAGAAAGACCTGTTGGGAG 57.508 47.619 0.00 0.00 38.76 4.30
94 95 1.072331 TGAGAAAGACCTGTTGGGAGC 59.928 52.381 0.00 0.00 38.76 4.70
95 96 0.035458 AGAAAGACCTGTTGGGAGCG 59.965 55.000 0.00 0.00 38.76 5.03
96 97 1.578206 GAAAGACCTGTTGGGAGCGC 61.578 60.000 0.00 0.00 38.76 5.92
97 98 3.883744 AAGACCTGTTGGGAGCGCG 62.884 63.158 0.00 0.00 38.76 6.86
107 108 3.880846 GGAGCGCGGCTGGAAATG 61.881 66.667 8.83 0.00 39.88 2.32
108 109 4.543084 GAGCGCGGCTGGAAATGC 62.543 66.667 8.83 0.00 39.88 3.56
110 111 4.543084 GCGCGGCTGGAAATGCTC 62.543 66.667 8.83 0.00 0.00 4.26
111 112 2.821366 CGCGGCTGGAAATGCTCT 60.821 61.111 0.00 0.00 0.00 4.09
112 113 2.401766 CGCGGCTGGAAATGCTCTT 61.402 57.895 0.00 0.00 0.00 2.85
113 114 1.089481 CGCGGCTGGAAATGCTCTTA 61.089 55.000 0.00 0.00 0.00 2.10
114 115 0.659957 GCGGCTGGAAATGCTCTTAG 59.340 55.000 0.00 0.00 0.00 2.18
115 116 0.659957 CGGCTGGAAATGCTCTTAGC 59.340 55.000 0.00 0.00 42.82 3.09
116 117 1.028130 GGCTGGAAATGCTCTTAGCC 58.972 55.000 0.00 0.00 41.51 3.93
117 118 1.683011 GGCTGGAAATGCTCTTAGCCA 60.683 52.381 8.10 0.00 45.73 4.75
118 119 1.403323 GCTGGAAATGCTCTTAGCCAC 59.597 52.381 0.00 0.00 41.51 5.01
119 120 1.667724 CTGGAAATGCTCTTAGCCACG 59.332 52.381 0.00 0.00 41.51 4.94
120 121 1.003118 TGGAAATGCTCTTAGCCACGT 59.997 47.619 0.00 0.00 41.51 4.49
121 122 1.666189 GGAAATGCTCTTAGCCACGTC 59.334 52.381 0.00 0.00 41.51 4.34
122 123 1.666189 GAAATGCTCTTAGCCACGTCC 59.334 52.381 0.00 0.00 41.51 4.79
123 124 0.905357 AATGCTCTTAGCCACGTCCT 59.095 50.000 0.00 0.00 41.51 3.85
192 193 2.164865 CTCGTGAGGGCAGAGCAACT 62.165 60.000 0.00 0.00 0.00 3.16
234 235 2.315925 AGCAATGTAGACCGACATGG 57.684 50.000 0.00 0.00 39.99 3.66
335 336 2.086251 GATGGAGAGGAGAGGCAGCG 62.086 65.000 0.00 0.00 0.00 5.18
345 346 0.106708 AGAGGCAGCGTGAAGAACAA 59.893 50.000 0.00 0.00 0.00 2.83
367 368 3.355203 ATTTTGGGTGATGCGCGGC 62.355 57.895 8.83 0.00 0.00 6.53
877 879 1.422531 TCCTGGTTTGCTTTTGCCAT 58.577 45.000 0.00 0.00 46.87 4.40
1159 1161 2.434331 GTGGTAGCTGTTGGGCCA 59.566 61.111 0.00 0.00 0.00 5.36
1335 1337 8.742125 AATATGGAGAATCTAAGGGTGTATCA 57.258 34.615 0.00 0.00 33.73 2.15
1525 1528 3.635836 TCCTGAACACACATCAAAATGCA 59.364 39.130 0.00 0.00 36.26 3.96
1565 1568 1.122019 AGAAGACAACCAGACCCGCT 61.122 55.000 0.00 0.00 0.00 5.52
1629 1635 2.368311 ACCCGAAACAAAGGCCTAAA 57.632 45.000 5.16 0.00 0.00 1.85
2084 2091 3.079578 CTGATGGCTGTCTTGACATTGT 58.920 45.455 3.79 0.00 35.51 2.71
2170 2179 9.262472 GTTTCAAAATACGCTATTGTTAGACAG 57.738 33.333 0.00 0.00 0.00 3.51
2406 2415 2.455674 TGCTACTGCACACTACCTTG 57.544 50.000 0.00 0.00 45.31 3.61
2427 2436 2.001812 AGAGTGATGTCATCGTGTGC 57.998 50.000 8.29 0.00 0.00 4.57
2437 2446 3.431912 TGTCATCGTGTGCACATCTTAAC 59.568 43.478 24.69 18.16 0.00 2.01
2544 2760 3.508845 ACCAAACAGTAAGCATGGAGT 57.491 42.857 0.00 0.00 35.16 3.85
2545 2761 3.832527 ACCAAACAGTAAGCATGGAGTT 58.167 40.909 0.00 0.00 35.16 3.01
2936 3154 5.817816 GGATTCTCATGTTGGTAGTGGTAAG 59.182 44.000 0.00 0.00 0.00 2.34
2978 3196 4.219115 TCACTGAGGATGGAAGACCTATC 58.781 47.826 0.00 0.00 36.57 2.08
3081 3299 5.330455 TGAAGTAGACGAATCTGCAGAAT 57.670 39.130 22.50 13.38 39.88 2.40
3333 3551 4.389374 AGATGTTGGTTACTGTCAAGGTG 58.611 43.478 0.00 0.00 0.00 4.00
3499 3717 2.403259 TGATGCGTAGATTGGTATGCG 58.597 47.619 0.00 0.00 37.69 4.73
4139 4359 5.335897 GCTTAGGCAAAAGATCAACATGACA 60.336 40.000 0.00 0.00 38.54 3.58
4192 4413 1.780309 TCTTTTGAAGGGGAGCCTTGA 59.220 47.619 0.00 0.00 0.00 3.02
4734 4963 4.558296 GCTTGCTTCCTCTTGAGGAAAAAG 60.558 45.833 28.47 28.47 46.16 2.27
4823 5053 7.935338 AAATCTCACAAAATTGTAAGCACTG 57.065 32.000 0.00 0.00 39.91 3.66
4860 5090 5.517322 TTGGCAAACGTTAAGTGGTATTT 57.483 34.783 0.00 0.00 0.00 1.40
4865 5095 6.525280 GGCAAACGTTAAGTGGTATTTGTATG 59.475 38.462 0.00 0.00 31.27 2.39
5067 5297 3.370633 GGGATAAGGACAAGGACAAGGAC 60.371 52.174 0.00 0.00 0.00 3.85
5068 5298 3.263425 GGATAAGGACAAGGACAAGGACA 59.737 47.826 0.00 0.00 0.00 4.02
5069 5299 4.263331 GGATAAGGACAAGGACAAGGACAA 60.263 45.833 0.00 0.00 0.00 3.18
5070 5300 2.938956 AGGACAAGGACAAGGACAAG 57.061 50.000 0.00 0.00 0.00 3.16
5071 5301 1.421646 AGGACAAGGACAAGGACAAGG 59.578 52.381 0.00 0.00 0.00 3.61
5072 5302 1.420138 GGACAAGGACAAGGACAAGGA 59.580 52.381 0.00 0.00 0.00 3.36
5073 5303 2.495084 GACAAGGACAAGGACAAGGAC 58.505 52.381 0.00 0.00 0.00 3.85
5074 5304 1.843851 ACAAGGACAAGGACAAGGACA 59.156 47.619 0.00 0.00 0.00 4.02
5075 5305 2.241176 ACAAGGACAAGGACAAGGACAA 59.759 45.455 0.00 0.00 0.00 3.18
5076 5306 2.880890 CAAGGACAAGGACAAGGACAAG 59.119 50.000 0.00 0.00 0.00 3.16
5077 5307 1.421646 AGGACAAGGACAAGGACAAGG 59.578 52.381 0.00 0.00 0.00 3.61
5078 5308 1.420138 GGACAAGGACAAGGACAAGGA 59.580 52.381 0.00 0.00 0.00 3.36
5079 5309 2.495084 GACAAGGACAAGGACAAGGAC 58.505 52.381 0.00 0.00 0.00 3.85
5080 5310 1.843851 ACAAGGACAAGGACAAGGACA 59.156 47.619 0.00 0.00 0.00 4.02
5081 5311 2.241176 ACAAGGACAAGGACAAGGACAA 59.759 45.455 0.00 0.00 0.00 3.18
5082 5312 2.880890 CAAGGACAAGGACAAGGACAAG 59.119 50.000 0.00 0.00 0.00 3.16
5083 5313 1.421646 AGGACAAGGACAAGGACAAGG 59.578 52.381 0.00 0.00 0.00 3.61
5084 5314 1.420138 GGACAAGGACAAGGACAAGGA 59.580 52.381 0.00 0.00 0.00 3.36
5085 5315 2.495084 GACAAGGACAAGGACAAGGAC 58.505 52.381 0.00 0.00 0.00 3.85
5239 5469 6.208988 ACCAAAACCTGACTTTTCTTTCTC 57.791 37.500 0.00 0.00 0.00 2.87
5797 6033 1.620819 ACAGCGAGTGAAGGTTCTCAT 59.379 47.619 0.00 0.00 0.00 2.90
5866 6102 9.045223 GCAACTTCTGTATGTAATGATATCACA 57.955 33.333 7.78 2.01 0.00 3.58
5982 6218 2.040145 TGCATGTTGAGATTCACCTGGA 59.960 45.455 0.00 0.00 0.00 3.86
6057 6293 3.435327 CCTTACACTGCACGATTTTGCTA 59.565 43.478 0.00 0.00 43.41 3.49
6133 6532 2.693074 GACAAACAAGTCACCCCATTGT 59.307 45.455 0.00 0.00 38.76 2.71
6151 6550 7.561356 CCCCATTGTTCCACTTAAATTATCTCT 59.439 37.037 0.00 0.00 0.00 3.10
6280 6679 5.935945 TCACAAACTAATCCAAAGGAGTCA 58.064 37.500 0.00 0.00 34.05 3.41
6317 6716 2.917713 ATGAAATGGGGGTTGTGCTA 57.082 45.000 0.00 0.00 0.00 3.49
6324 6723 3.818295 TGGGGGTTGTGCTATAAAAGT 57.182 42.857 0.00 0.00 0.00 2.66
6332 6731 7.039574 GGGGTTGTGCTATAAAAGTAAGGAAAA 60.040 37.037 0.00 0.00 0.00 2.29
6333 6732 8.361889 GGGTTGTGCTATAAAAGTAAGGAAAAA 58.638 33.333 0.00 0.00 0.00 1.94
6371 6770 3.356529 AAACAGAGCTATCAGGTTGGG 57.643 47.619 0.00 0.00 0.00 4.12
6372 6771 1.958288 ACAGAGCTATCAGGTTGGGT 58.042 50.000 0.00 0.00 0.00 4.51
6373 6772 2.269940 ACAGAGCTATCAGGTTGGGTT 58.730 47.619 0.00 0.00 0.00 4.11
6374 6773 3.450904 ACAGAGCTATCAGGTTGGGTTA 58.549 45.455 0.00 0.00 0.00 2.85
6375 6774 3.844211 ACAGAGCTATCAGGTTGGGTTAA 59.156 43.478 0.00 0.00 0.00 2.01
6376 6775 4.288626 ACAGAGCTATCAGGTTGGGTTAAA 59.711 41.667 0.00 0.00 0.00 1.52
6377 6776 4.878397 CAGAGCTATCAGGTTGGGTTAAAG 59.122 45.833 0.00 0.00 0.00 1.85
6378 6777 4.783227 AGAGCTATCAGGTTGGGTTAAAGA 59.217 41.667 0.00 0.00 0.00 2.52
6379 6778 5.250774 AGAGCTATCAGGTTGGGTTAAAGAA 59.749 40.000 0.00 0.00 0.00 2.52
6380 6779 5.501156 AGCTATCAGGTTGGGTTAAAGAAG 58.499 41.667 0.00 0.00 0.00 2.85
6381 6780 5.250774 AGCTATCAGGTTGGGTTAAAGAAGA 59.749 40.000 0.00 0.00 0.00 2.87
6382 6781 5.586643 GCTATCAGGTTGGGTTAAAGAAGAG 59.413 44.000 0.00 0.00 0.00 2.85
6383 6782 5.584551 ATCAGGTTGGGTTAAAGAAGAGT 57.415 39.130 0.00 0.00 0.00 3.24
6384 6783 6.697641 ATCAGGTTGGGTTAAAGAAGAGTA 57.302 37.500 0.00 0.00 0.00 2.59
6385 6784 6.110411 TCAGGTTGGGTTAAAGAAGAGTAG 57.890 41.667 0.00 0.00 0.00 2.57
6386 6785 5.605488 TCAGGTTGGGTTAAAGAAGAGTAGT 59.395 40.000 0.00 0.00 0.00 2.73
6387 6786 6.100714 TCAGGTTGGGTTAAAGAAGAGTAGTT 59.899 38.462 0.00 0.00 0.00 2.24
6388 6787 6.427242 CAGGTTGGGTTAAAGAAGAGTAGTTC 59.573 42.308 0.00 0.00 0.00 3.01
6389 6788 5.407691 GGTTGGGTTAAAGAAGAGTAGTTCG 59.592 44.000 0.00 0.00 0.00 3.95
6390 6789 5.143376 TGGGTTAAAGAAGAGTAGTTCGG 57.857 43.478 0.00 0.00 0.00 4.30
6391 6790 4.590222 TGGGTTAAAGAAGAGTAGTTCGGT 59.410 41.667 0.00 0.00 0.00 4.69
6392 6791 5.070847 TGGGTTAAAGAAGAGTAGTTCGGTT 59.929 40.000 0.00 0.00 0.00 4.44
6393 6792 5.636965 GGGTTAAAGAAGAGTAGTTCGGTTC 59.363 44.000 0.00 0.00 0.00 3.62
6394 6793 5.636965 GGTTAAAGAAGAGTAGTTCGGTTCC 59.363 44.000 0.00 0.00 0.00 3.62
6395 6794 3.572604 AAGAAGAGTAGTTCGGTTCCG 57.427 47.619 4.74 4.74 0.00 4.30
6396 6795 2.787994 AGAAGAGTAGTTCGGTTCCGA 58.212 47.619 10.00 10.00 36.63 4.55
6397 6796 2.748532 AGAAGAGTAGTTCGGTTCCGAG 59.251 50.000 13.56 0.00 39.68 4.63
6398 6797 2.197283 AGAGTAGTTCGGTTCCGAGT 57.803 50.000 13.56 8.39 39.68 4.18
6399 6798 2.512705 AGAGTAGTTCGGTTCCGAGTT 58.487 47.619 13.56 8.91 39.68 3.01
6400 6799 2.487372 AGAGTAGTTCGGTTCCGAGTTC 59.513 50.000 13.56 8.92 39.68 3.01
6401 6800 2.227388 GAGTAGTTCGGTTCCGAGTTCA 59.773 50.000 13.56 0.00 39.68 3.18
6402 6801 2.624838 AGTAGTTCGGTTCCGAGTTCAA 59.375 45.455 13.56 0.00 39.68 2.69
6403 6802 2.607631 AGTTCGGTTCCGAGTTCAAA 57.392 45.000 13.56 0.00 39.68 2.69
6404 6803 2.908916 AGTTCGGTTCCGAGTTCAAAA 58.091 42.857 13.56 0.00 39.68 2.44
6405 6804 2.610833 AGTTCGGTTCCGAGTTCAAAAC 59.389 45.455 13.56 7.76 39.68 2.43
6406 6805 2.312722 TCGGTTCCGAGTTCAAAACA 57.687 45.000 10.00 0.00 34.24 2.83
6407 6806 2.206750 TCGGTTCCGAGTTCAAAACAG 58.793 47.619 10.00 0.00 34.24 3.16
6408 6807 2.159071 TCGGTTCCGAGTTCAAAACAGA 60.159 45.455 10.00 0.00 34.24 3.41
6409 6808 2.806244 CGGTTCCGAGTTCAAAACAGAT 59.194 45.455 5.19 0.00 0.00 2.90
6410 6809 3.250040 CGGTTCCGAGTTCAAAACAGATT 59.750 43.478 5.19 0.00 0.00 2.40
6411 6810 4.537015 GGTTCCGAGTTCAAAACAGATTG 58.463 43.478 0.00 0.00 0.00 2.67
6412 6811 4.274950 GGTTCCGAGTTCAAAACAGATTGA 59.725 41.667 0.00 0.00 37.53 2.57
6413 6812 5.220970 GGTTCCGAGTTCAAAACAGATTGAA 60.221 40.000 0.00 0.00 44.68 2.69
6419 6818 2.998772 TCAAAACAGATTGAACTGCGC 58.001 42.857 0.00 0.00 41.06 6.09
6420 6819 2.357323 TCAAAACAGATTGAACTGCGCA 59.643 40.909 10.98 10.98 41.06 6.09
6421 6820 2.693797 AAACAGATTGAACTGCGCAG 57.306 45.000 34.89 34.89 41.06 5.18
6422 6821 1.882912 AACAGATTGAACTGCGCAGA 58.117 45.000 42.03 21.72 41.06 4.26
6423 6822 1.436600 ACAGATTGAACTGCGCAGAG 58.563 50.000 42.03 20.13 41.06 3.35
6424 6823 0.725686 CAGATTGAACTGCGCAGAGG 59.274 55.000 42.03 19.32 0.00 3.69
6425 6824 0.610174 AGATTGAACTGCGCAGAGGA 59.390 50.000 42.03 23.94 0.00 3.71
6426 6825 1.209019 AGATTGAACTGCGCAGAGGAT 59.791 47.619 42.03 27.07 0.00 3.24
6427 6826 2.012673 GATTGAACTGCGCAGAGGATT 58.987 47.619 42.03 26.18 0.00 3.01
6428 6827 1.442769 TTGAACTGCGCAGAGGATTC 58.557 50.000 42.03 31.74 0.00 2.52
6429 6828 0.610174 TGAACTGCGCAGAGGATTCT 59.390 50.000 42.03 16.78 0.00 2.40
6430 6829 1.002430 TGAACTGCGCAGAGGATTCTT 59.998 47.619 42.03 24.29 0.00 2.52
6431 6830 1.396301 GAACTGCGCAGAGGATTCTTG 59.604 52.381 42.03 14.48 0.00 3.02
6432 6831 0.322975 ACTGCGCAGAGGATTCTTGT 59.677 50.000 42.03 15.20 0.00 3.16
6433 6832 0.725686 CTGCGCAGAGGATTCTTGTG 59.274 55.000 33.66 0.00 0.00 3.33
6434 6833 0.674581 TGCGCAGAGGATTCTTGTGG 60.675 55.000 5.66 0.00 0.00 4.17
6435 6834 1.372087 GCGCAGAGGATTCTTGTGGG 61.372 60.000 0.30 5.77 0.00 4.61
6436 6835 0.250234 CGCAGAGGATTCTTGTGGGA 59.750 55.000 4.34 0.00 0.00 4.37
6437 6836 1.339055 CGCAGAGGATTCTTGTGGGAA 60.339 52.381 4.34 0.00 0.00 3.97
6438 6837 2.363683 GCAGAGGATTCTTGTGGGAAG 58.636 52.381 0.00 0.00 0.00 3.46
6439 6838 2.943199 GCAGAGGATTCTTGTGGGAAGG 60.943 54.545 0.00 0.00 0.00 3.46
6440 6839 1.918957 AGAGGATTCTTGTGGGAAGGG 59.081 52.381 0.00 0.00 0.00 3.95
6441 6840 1.916181 GAGGATTCTTGTGGGAAGGGA 59.084 52.381 0.00 0.00 0.00 4.20
6442 6841 2.308866 GAGGATTCTTGTGGGAAGGGAA 59.691 50.000 0.00 0.00 0.00 3.97
6443 6842 2.310052 AGGATTCTTGTGGGAAGGGAAG 59.690 50.000 0.00 0.00 0.00 3.46
6444 6843 2.621668 GGATTCTTGTGGGAAGGGAAGG 60.622 54.545 0.00 0.00 0.00 3.46
6445 6844 1.827792 TTCTTGTGGGAAGGGAAGGA 58.172 50.000 0.00 0.00 0.00 3.36
6446 6845 1.362224 TCTTGTGGGAAGGGAAGGAG 58.638 55.000 0.00 0.00 0.00 3.69
6447 6846 0.322906 CTTGTGGGAAGGGAAGGAGC 60.323 60.000 0.00 0.00 0.00 4.70
6448 6847 0.772124 TTGTGGGAAGGGAAGGAGCT 60.772 55.000 0.00 0.00 0.00 4.09
6449 6848 1.201429 TGTGGGAAGGGAAGGAGCTC 61.201 60.000 4.71 4.71 0.00 4.09
6450 6849 1.990060 TGGGAAGGGAAGGAGCTCG 60.990 63.158 7.83 0.00 0.00 5.03
6451 6850 2.188207 GGAAGGGAAGGAGCTCGC 59.812 66.667 7.83 0.47 0.00 5.03
6452 6851 2.660064 GGAAGGGAAGGAGCTCGCA 61.660 63.158 7.83 0.00 0.00 5.10
6453 6852 1.296715 GAAGGGAAGGAGCTCGCAA 59.703 57.895 7.83 0.00 0.00 4.85
6454 6853 0.321653 GAAGGGAAGGAGCTCGCAAA 60.322 55.000 7.83 0.00 0.00 3.68
6455 6854 0.329596 AAGGGAAGGAGCTCGCAAAT 59.670 50.000 7.83 0.00 0.00 2.32
6456 6855 0.393537 AGGGAAGGAGCTCGCAAATG 60.394 55.000 7.83 0.00 0.00 2.32
6457 6856 1.379642 GGGAAGGAGCTCGCAAATGG 61.380 60.000 7.83 0.00 0.00 3.16
6458 6857 0.678048 GGAAGGAGCTCGCAAATGGT 60.678 55.000 7.83 0.00 0.00 3.55
6459 6858 0.449388 GAAGGAGCTCGCAAATGGTG 59.551 55.000 7.83 0.00 0.00 4.17
6460 6859 0.962356 AAGGAGCTCGCAAATGGTGG 60.962 55.000 7.83 0.00 0.00 4.61
6461 6860 2.409870 GGAGCTCGCAAATGGTGGG 61.410 63.158 7.83 0.00 41.50 4.61
6462 6861 1.377202 GAGCTCGCAAATGGTGGGA 60.377 57.895 0.00 0.00 46.26 4.37
6466 6865 2.639970 TCGCAAATGGTGGGAAGTG 58.360 52.632 0.00 0.00 45.52 3.16
6467 6866 1.080569 CGCAAATGGTGGGAAGTGC 60.081 57.895 0.00 0.00 42.76 4.40
6468 6867 1.293179 GCAAATGGTGGGAAGTGCC 59.707 57.895 0.00 0.00 0.00 5.01
6469 6868 1.187567 GCAAATGGTGGGAAGTGCCT 61.188 55.000 0.00 0.00 36.66 4.75
6470 6869 0.604578 CAAATGGTGGGAAGTGCCTG 59.395 55.000 0.00 0.00 36.66 4.85
6471 6870 0.542702 AAATGGTGGGAAGTGCCTGG 60.543 55.000 0.00 0.00 36.66 4.45
6472 6871 1.729267 AATGGTGGGAAGTGCCTGGT 61.729 55.000 0.00 0.00 36.66 4.00
6473 6872 1.729267 ATGGTGGGAAGTGCCTGGTT 61.729 55.000 0.00 0.00 36.66 3.67
6474 6873 1.063070 TGGTGGGAAGTGCCTGGTTA 61.063 55.000 0.00 0.00 36.66 2.85
6475 6874 0.322546 GGTGGGAAGTGCCTGGTTAG 60.323 60.000 0.00 0.00 36.66 2.34
6476 6875 0.960861 GTGGGAAGTGCCTGGTTAGC 60.961 60.000 0.00 0.00 36.66 3.09
6477 6876 1.133809 TGGGAAGTGCCTGGTTAGCT 61.134 55.000 0.00 0.00 36.66 3.32
6478 6877 0.678048 GGGAAGTGCCTGGTTAGCTG 60.678 60.000 0.00 0.00 36.66 4.24
6479 6878 0.678048 GGAAGTGCCTGGTTAGCTGG 60.678 60.000 0.00 2.89 0.00 4.85
6480 6879 0.324943 GAAGTGCCTGGTTAGCTGGA 59.675 55.000 11.46 0.00 0.00 3.86
6481 6880 0.771127 AAGTGCCTGGTTAGCTGGAA 59.229 50.000 11.46 0.00 0.00 3.53
6482 6881 0.771127 AGTGCCTGGTTAGCTGGAAA 59.229 50.000 11.46 0.00 0.00 3.13
6483 6882 1.168714 GTGCCTGGTTAGCTGGAAAG 58.831 55.000 11.46 0.00 0.00 2.62
6484 6883 0.771127 TGCCTGGTTAGCTGGAAAGT 59.229 50.000 11.46 0.00 0.00 2.66
6485 6884 1.168714 GCCTGGTTAGCTGGAAAGTG 58.831 55.000 11.46 0.00 0.00 3.16
6486 6885 1.826385 CCTGGTTAGCTGGAAAGTGG 58.174 55.000 0.00 0.00 0.00 4.00
6487 6886 1.073923 CCTGGTTAGCTGGAAAGTGGT 59.926 52.381 0.00 0.00 0.00 4.16
6488 6887 2.489073 CCTGGTTAGCTGGAAAGTGGTT 60.489 50.000 0.00 0.00 0.00 3.67
6489 6888 3.222603 CTGGTTAGCTGGAAAGTGGTTT 58.777 45.455 0.00 0.00 0.00 3.27
6490 6889 2.955660 TGGTTAGCTGGAAAGTGGTTTG 59.044 45.455 0.00 0.00 0.00 2.93
6491 6890 2.288213 GGTTAGCTGGAAAGTGGTTTGC 60.288 50.000 0.00 0.00 34.68 3.68
6492 6891 1.616159 TAGCTGGAAAGTGGTTTGCC 58.384 50.000 0.00 0.00 33.19 4.52
6493 6892 1.007387 GCTGGAAAGTGGTTTGCCG 60.007 57.895 0.00 0.00 37.67 5.69
6494 6893 1.659794 CTGGAAAGTGGTTTGCCGG 59.340 57.895 0.00 0.00 37.67 6.13
6495 6894 2.338620 GGAAAGTGGTTTGCCGGC 59.661 61.111 22.73 22.73 37.67 6.13
6496 6895 2.338620 GAAAGTGGTTTGCCGGCC 59.661 61.111 26.77 9.02 37.67 6.13
6497 6896 3.551887 GAAAGTGGTTTGCCGGCCG 62.552 63.158 26.77 21.04 37.67 6.13
6498 6897 4.572571 AAGTGGTTTGCCGGCCGA 62.573 61.111 30.73 10.22 37.67 5.54
6527 6926 2.350057 GGGGGCTAGGAATTTCAGAC 57.650 55.000 0.00 0.00 0.00 3.51
6528 6927 1.133761 GGGGGCTAGGAATTTCAGACC 60.134 57.143 0.80 0.80 36.67 3.85
6529 6928 1.847088 GGGGCTAGGAATTTCAGACCT 59.153 52.381 8.19 0.00 37.64 3.85
6530 6929 2.158740 GGGGCTAGGAATTTCAGACCTC 60.159 54.545 8.19 0.00 37.64 3.85
6531 6930 2.505819 GGGCTAGGAATTTCAGACCTCA 59.494 50.000 2.09 0.00 34.35 3.86
6532 6931 3.536570 GGCTAGGAATTTCAGACCTCAC 58.463 50.000 0.00 0.00 35.52 3.51
6533 6932 3.055094 GGCTAGGAATTTCAGACCTCACA 60.055 47.826 0.00 0.00 35.52 3.58
6534 6933 4.187694 GCTAGGAATTTCAGACCTCACAG 58.812 47.826 0.00 0.00 35.52 3.66
6535 6934 3.064900 AGGAATTTCAGACCTCACAGC 57.935 47.619 0.00 0.00 0.00 4.40
6536 6935 2.373169 AGGAATTTCAGACCTCACAGCA 59.627 45.455 0.00 0.00 0.00 4.41
6537 6936 2.485814 GGAATTTCAGACCTCACAGCAC 59.514 50.000 0.00 0.00 0.00 4.40
6538 6937 2.936919 ATTTCAGACCTCACAGCACA 57.063 45.000 0.00 0.00 0.00 4.57
6539 6938 2.245159 TTTCAGACCTCACAGCACAG 57.755 50.000 0.00 0.00 0.00 3.66
6540 6939 1.413118 TTCAGACCTCACAGCACAGA 58.587 50.000 0.00 0.00 0.00 3.41
6541 6940 0.964700 TCAGACCTCACAGCACAGAG 59.035 55.000 0.00 0.00 0.00 3.35
6542 6941 0.678395 CAGACCTCACAGCACAGAGT 59.322 55.000 0.00 0.00 0.00 3.24
6543 6942 1.889170 CAGACCTCACAGCACAGAGTA 59.111 52.381 0.00 0.00 0.00 2.59
6544 6943 2.495270 CAGACCTCACAGCACAGAGTAT 59.505 50.000 0.00 0.00 0.00 2.12
6545 6944 3.056250 CAGACCTCACAGCACAGAGTATT 60.056 47.826 0.00 0.00 0.00 1.89
6546 6945 3.056250 AGACCTCACAGCACAGAGTATTG 60.056 47.826 0.00 0.00 0.00 1.90
6547 6946 2.005451 CCTCACAGCACAGAGTATTGC 58.995 52.381 0.00 0.00 39.16 3.56
6548 6947 2.005451 CTCACAGCACAGAGTATTGCC 58.995 52.381 0.00 0.00 39.75 4.52
6549 6948 1.625315 TCACAGCACAGAGTATTGCCT 59.375 47.619 0.00 0.00 39.75 4.75
6550 6949 2.038952 TCACAGCACAGAGTATTGCCTT 59.961 45.455 0.00 0.00 39.75 4.35
6551 6950 2.161012 CACAGCACAGAGTATTGCCTTG 59.839 50.000 0.00 0.00 39.75 3.61
6552 6951 1.131883 CAGCACAGAGTATTGCCTTGC 59.868 52.381 0.00 0.00 39.75 4.01
6553 6952 0.097674 GCACAGAGTATTGCCTTGCG 59.902 55.000 0.00 0.00 32.21 4.85
6554 6953 0.729116 CACAGAGTATTGCCTTGCGG 59.271 55.000 0.00 0.00 0.00 5.69
6568 6967 3.945434 GCGGCTGCGATGGATGTG 61.945 66.667 0.00 0.00 0.00 3.21
6569 6968 3.274586 CGGCTGCGATGGATGTGG 61.275 66.667 0.00 0.00 0.00 4.17
6570 6969 2.190313 GGCTGCGATGGATGTGGA 59.810 61.111 0.00 0.00 0.00 4.02
6571 6970 1.228063 GGCTGCGATGGATGTGGAT 60.228 57.895 0.00 0.00 0.00 3.41
6572 6971 1.512996 GGCTGCGATGGATGTGGATG 61.513 60.000 0.00 0.00 0.00 3.51
6573 6972 1.947013 CTGCGATGGATGTGGATGC 59.053 57.895 0.00 0.00 0.00 3.91
6574 6973 0.816421 CTGCGATGGATGTGGATGCA 60.816 55.000 0.00 0.00 33.95 3.96
6575 6974 1.096967 TGCGATGGATGTGGATGCAC 61.097 55.000 10.90 10.90 31.94 4.57
6576 6975 0.816825 GCGATGGATGTGGATGCACT 60.817 55.000 18.75 4.00 31.94 4.40
6577 6976 0.942252 CGATGGATGTGGATGCACTG 59.058 55.000 18.75 0.00 31.94 3.66
6578 6977 1.315690 GATGGATGTGGATGCACTGG 58.684 55.000 18.75 0.00 31.94 4.00
6579 6978 0.921166 ATGGATGTGGATGCACTGGA 59.079 50.000 18.75 0.00 31.94 3.86
6580 6979 0.035152 TGGATGTGGATGCACTGGAC 60.035 55.000 18.75 6.90 0.00 4.02
6581 6980 0.254178 GGATGTGGATGCACTGGACT 59.746 55.000 18.75 0.00 0.00 3.85
6582 6981 1.376543 GATGTGGATGCACTGGACTG 58.623 55.000 18.75 0.00 0.00 3.51
6583 6982 0.986527 ATGTGGATGCACTGGACTGA 59.013 50.000 18.75 0.00 0.00 3.41
6584 6983 0.035317 TGTGGATGCACTGGACTGAC 59.965 55.000 18.75 0.00 0.00 3.51
6585 6984 0.674895 GTGGATGCACTGGACTGACC 60.675 60.000 10.51 0.00 39.54 4.02
6586 6985 1.078143 GGATGCACTGGACTGACCC 60.078 63.158 0.00 0.00 38.00 4.46
6587 6986 1.448540 GATGCACTGGACTGACCCG 60.449 63.158 0.00 0.00 38.00 5.28
6588 6987 2.859273 GATGCACTGGACTGACCCGG 62.859 65.000 0.00 0.00 38.00 5.73
6589 6988 3.311110 GCACTGGACTGACCCGGA 61.311 66.667 0.73 0.00 38.00 5.14
6590 6989 2.657237 CACTGGACTGACCCGGAC 59.343 66.667 0.73 0.00 38.00 4.79
6591 6990 2.200370 ACTGGACTGACCCGGACA 59.800 61.111 0.73 1.39 38.00 4.02
6592 6991 1.458777 ACTGGACTGACCCGGACAA 60.459 57.895 0.73 0.00 38.00 3.18
6593 6992 1.293498 CTGGACTGACCCGGACAAG 59.707 63.158 0.73 0.00 38.00 3.16
6594 6993 2.172483 CTGGACTGACCCGGACAAGG 62.172 65.000 0.73 0.00 38.00 3.61
6595 6994 2.047179 GACTGACCCGGACAAGGC 60.047 66.667 0.73 0.00 0.00 4.35
6596 6995 3.607370 GACTGACCCGGACAAGGCC 62.607 68.421 0.73 0.00 0.00 5.19
6597 6996 3.322466 CTGACCCGGACAAGGCCT 61.322 66.667 0.73 0.00 0.00 5.19
6598 6997 3.612247 CTGACCCGGACAAGGCCTG 62.612 68.421 5.69 2.82 0.00 4.85
6599 6998 4.410400 GACCCGGACAAGGCCTGG 62.410 72.222 5.69 5.45 38.20 4.45
6600 6999 4.974438 ACCCGGACAAGGCCTGGA 62.974 66.667 16.25 0.00 35.98 3.86
6601 7000 4.101448 CCCGGACAAGGCCTGGAG 62.101 72.222 16.25 6.33 34.50 3.86
6602 7001 3.322466 CCGGACAAGGCCTGGAGT 61.322 66.667 16.25 10.09 0.00 3.85
6603 7002 2.046892 CGGACAAGGCCTGGAGTG 60.047 66.667 16.25 7.50 0.00 3.51
6604 7003 2.352805 GGACAAGGCCTGGAGTGG 59.647 66.667 16.25 0.00 0.00 4.00
6620 7019 3.787001 GGCTTACCGCTGCCCTCT 61.787 66.667 0.00 0.00 43.11 3.69
6621 7020 2.512515 GCTTACCGCTGCCCTCTG 60.513 66.667 0.00 0.00 35.14 3.35
6622 7021 3.019003 GCTTACCGCTGCCCTCTGA 62.019 63.158 0.00 0.00 35.14 3.27
6623 7022 1.153549 CTTACCGCTGCCCTCTGAC 60.154 63.158 0.00 0.00 0.00 3.51
6624 7023 2.579684 CTTACCGCTGCCCTCTGACC 62.580 65.000 0.00 0.00 0.00 4.02
6628 7027 3.650950 GCTGCCCTCTGACCCCAA 61.651 66.667 0.00 0.00 0.00 4.12
6629 7028 2.673523 CTGCCCTCTGACCCCAAG 59.326 66.667 0.00 0.00 0.00 3.61
6630 7029 2.935481 TGCCCTCTGACCCCAAGG 60.935 66.667 0.00 0.00 40.04 3.61
6647 7046 3.996825 GGTGCTGAACCTATTTGCG 57.003 52.632 0.00 0.00 46.55 4.85
6648 7047 0.451783 GGTGCTGAACCTATTTGCGG 59.548 55.000 0.00 0.00 46.55 5.69
6649 7048 0.179163 GTGCTGAACCTATTTGCGGC 60.179 55.000 0.00 0.00 0.00 6.53
6650 7049 1.312371 TGCTGAACCTATTTGCGGCC 61.312 55.000 0.00 0.00 0.00 6.13
6651 7050 1.032114 GCTGAACCTATTTGCGGCCT 61.032 55.000 0.00 0.00 0.00 5.19
6652 7051 1.017387 CTGAACCTATTTGCGGCCTC 58.983 55.000 0.00 0.00 0.00 4.70
6653 7052 0.326595 TGAACCTATTTGCGGCCTCA 59.673 50.000 0.00 0.00 0.00 3.86
6654 7053 1.017387 GAACCTATTTGCGGCCTCAG 58.983 55.000 0.00 0.00 0.00 3.35
6655 7054 1.032114 AACCTATTTGCGGCCTCAGC 61.032 55.000 0.00 0.00 38.76 4.26
6665 7064 4.232310 GCCTCAGCCAGATTCCAC 57.768 61.111 0.00 0.00 0.00 4.02
6666 7065 1.452833 GCCTCAGCCAGATTCCACC 60.453 63.158 0.00 0.00 0.00 4.61
6667 7066 1.919600 GCCTCAGCCAGATTCCACCT 61.920 60.000 0.00 0.00 0.00 4.00
6668 7067 0.179936 CCTCAGCCAGATTCCACCTC 59.820 60.000 0.00 0.00 0.00 3.85
6669 7068 0.179089 CTCAGCCAGATTCCACCTCG 60.179 60.000 0.00 0.00 0.00 4.63
6670 7069 1.153289 CAGCCAGATTCCACCTCGG 60.153 63.158 0.00 0.00 0.00 4.63
6671 7070 2.514824 GCCAGATTCCACCTCGGC 60.515 66.667 0.00 0.00 33.14 5.54
6672 7071 2.202932 CCAGATTCCACCTCGGCG 60.203 66.667 0.00 0.00 33.14 6.46
6673 7072 2.721167 CCAGATTCCACCTCGGCGA 61.721 63.158 10.14 10.14 33.14 5.54
6674 7073 1.443407 CAGATTCCACCTCGGCGAT 59.557 57.895 11.27 0.00 33.14 4.58
6675 7074 0.877649 CAGATTCCACCTCGGCGATG 60.878 60.000 11.27 10.94 33.14 3.84
6676 7075 1.595382 GATTCCACCTCGGCGATGG 60.595 63.158 20.71 20.71 34.58 3.51
6677 7076 2.311688 GATTCCACCTCGGCGATGGT 62.312 60.000 24.33 22.33 36.96 3.55
6678 7077 2.311688 ATTCCACCTCGGCGATGGTC 62.312 60.000 24.33 0.00 33.75 4.02
6679 7078 3.770040 CCACCTCGGCGATGGTCA 61.770 66.667 22.39 0.00 33.75 4.02
6680 7079 2.264480 CACCTCGGCGATGGTCAA 59.736 61.111 22.39 0.00 33.75 3.18
6681 7080 2.100631 CACCTCGGCGATGGTCAAC 61.101 63.158 22.39 0.00 33.75 3.18
6682 7081 2.885644 CCTCGGCGATGGTCAACG 60.886 66.667 11.27 0.00 0.00 4.10
6683 7082 2.126071 CTCGGCGATGGTCAACGT 60.126 61.111 11.27 0.00 0.00 3.99
6684 7083 1.138036 CTCGGCGATGGTCAACGTA 59.862 57.895 11.27 0.00 0.00 3.57
6685 7084 0.248907 CTCGGCGATGGTCAACGTAT 60.249 55.000 11.27 0.00 0.00 3.06
6686 7085 0.248743 TCGGCGATGGTCAACGTATC 60.249 55.000 4.99 0.00 0.00 2.24
6687 7086 0.526739 CGGCGATGGTCAACGTATCA 60.527 55.000 0.00 0.00 0.00 2.15
6688 7087 1.209128 GGCGATGGTCAACGTATCAG 58.791 55.000 0.00 0.00 0.00 2.90
6689 7088 1.209128 GCGATGGTCAACGTATCAGG 58.791 55.000 0.00 0.00 0.00 3.86
6690 7089 1.470979 GCGATGGTCAACGTATCAGGT 60.471 52.381 0.00 0.00 0.00 4.00
6691 7090 2.888594 CGATGGTCAACGTATCAGGTT 58.111 47.619 0.00 0.00 0.00 3.50
6692 7091 2.858344 CGATGGTCAACGTATCAGGTTC 59.142 50.000 0.00 0.00 0.00 3.62
6693 7092 3.428999 CGATGGTCAACGTATCAGGTTCT 60.429 47.826 0.00 0.00 0.00 3.01
6694 7093 4.201980 CGATGGTCAACGTATCAGGTTCTA 60.202 45.833 0.00 0.00 0.00 2.10
6695 7094 4.713824 TGGTCAACGTATCAGGTTCTAG 57.286 45.455 0.00 0.00 0.00 2.43
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
12 13 5.743872 GTCGCATCTTCAGAAACTTGTTTTT 59.256 36.000 0.06 0.00 0.00 1.94
13 14 5.066505 AGTCGCATCTTCAGAAACTTGTTTT 59.933 36.000 0.06 0.00 0.00 2.43
14 15 4.576463 AGTCGCATCTTCAGAAACTTGTTT 59.424 37.500 0.00 0.00 0.00 2.83
15 16 4.024556 CAGTCGCATCTTCAGAAACTTGTT 60.025 41.667 0.00 0.00 0.00 2.83
16 17 3.496130 CAGTCGCATCTTCAGAAACTTGT 59.504 43.478 0.00 0.00 0.00 3.16
17 18 3.742882 TCAGTCGCATCTTCAGAAACTTG 59.257 43.478 0.00 0.00 0.00 3.16
18 19 3.995199 TCAGTCGCATCTTCAGAAACTT 58.005 40.909 0.00 0.00 0.00 2.66
19 20 3.667497 TCAGTCGCATCTTCAGAAACT 57.333 42.857 0.00 0.00 0.00 2.66
20 21 3.120511 GGTTCAGTCGCATCTTCAGAAAC 60.121 47.826 0.00 0.00 0.00 2.78
21 22 3.067106 GGTTCAGTCGCATCTTCAGAAA 58.933 45.455 0.00 0.00 0.00 2.52
22 23 2.688507 GGTTCAGTCGCATCTTCAGAA 58.311 47.619 0.00 0.00 0.00 3.02
23 24 1.402852 CGGTTCAGTCGCATCTTCAGA 60.403 52.381 0.00 0.00 0.00 3.27
24 25 0.994995 CGGTTCAGTCGCATCTTCAG 59.005 55.000 0.00 0.00 0.00 3.02
25 26 0.317160 ACGGTTCAGTCGCATCTTCA 59.683 50.000 0.00 0.00 0.00 3.02
26 27 1.429463 AACGGTTCAGTCGCATCTTC 58.571 50.000 0.00 0.00 0.00 2.87
27 28 1.878953 AAACGGTTCAGTCGCATCTT 58.121 45.000 0.00 0.00 0.00 2.40
28 29 1.878953 AAAACGGTTCAGTCGCATCT 58.121 45.000 0.00 0.00 0.00 2.90
29 30 2.681152 AAAAACGGTTCAGTCGCATC 57.319 45.000 0.00 0.00 0.00 3.91
56 57 0.705639 CAAACATTTTTACCGCGCCG 59.294 50.000 0.00 0.00 0.00 6.46
57 58 1.982913 CTCAAACATTTTTACCGCGCC 59.017 47.619 0.00 0.00 0.00 6.53
58 59 2.923643 TCTCAAACATTTTTACCGCGC 58.076 42.857 0.00 0.00 0.00 6.86
59 60 5.115021 GTCTTTCTCAAACATTTTTACCGCG 59.885 40.000 0.00 0.00 0.00 6.46
60 61 5.401376 GGTCTTTCTCAAACATTTTTACCGC 59.599 40.000 0.00 0.00 0.00 5.68
61 62 6.636850 CAGGTCTTTCTCAAACATTTTTACCG 59.363 38.462 0.00 0.00 0.00 4.02
62 63 7.489160 ACAGGTCTTTCTCAAACATTTTTACC 58.511 34.615 0.00 0.00 0.00 2.85
63 64 8.807581 CAACAGGTCTTTCTCAAACATTTTTAC 58.192 33.333 0.00 0.00 0.00 2.01
64 65 7.978975 CCAACAGGTCTTTCTCAAACATTTTTA 59.021 33.333 0.00 0.00 0.00 1.52
65 66 6.818142 CCAACAGGTCTTTCTCAAACATTTTT 59.182 34.615 0.00 0.00 0.00 1.94
66 67 6.340522 CCAACAGGTCTTTCTCAAACATTTT 58.659 36.000 0.00 0.00 0.00 1.82
67 68 5.163416 CCCAACAGGTCTTTCTCAAACATTT 60.163 40.000 0.00 0.00 0.00 2.32
68 69 4.342092 CCCAACAGGTCTTTCTCAAACATT 59.658 41.667 0.00 0.00 0.00 2.71
69 70 3.891366 CCCAACAGGTCTTTCTCAAACAT 59.109 43.478 0.00 0.00 0.00 2.71
70 71 3.053991 TCCCAACAGGTCTTTCTCAAACA 60.054 43.478 0.00 0.00 36.75 2.83
71 72 3.551846 TCCCAACAGGTCTTTCTCAAAC 58.448 45.455 0.00 0.00 36.75 2.93
72 73 3.820557 CTCCCAACAGGTCTTTCTCAAA 58.179 45.455 0.00 0.00 36.75 2.69
73 74 2.487265 GCTCCCAACAGGTCTTTCTCAA 60.487 50.000 0.00 0.00 36.75 3.02
74 75 1.072331 GCTCCCAACAGGTCTTTCTCA 59.928 52.381 0.00 0.00 36.75 3.27
75 76 1.814793 GCTCCCAACAGGTCTTTCTC 58.185 55.000 0.00 0.00 36.75 2.87
76 77 0.035458 CGCTCCCAACAGGTCTTTCT 59.965 55.000 0.00 0.00 36.75 2.52
77 78 1.578206 GCGCTCCCAACAGGTCTTTC 61.578 60.000 0.00 0.00 36.75 2.62
78 79 1.600916 GCGCTCCCAACAGGTCTTT 60.601 57.895 0.00 0.00 36.75 2.52
79 80 2.032681 GCGCTCCCAACAGGTCTT 59.967 61.111 0.00 0.00 36.75 3.01
80 81 4.379243 CGCGCTCCCAACAGGTCT 62.379 66.667 5.56 0.00 36.75 3.85
90 91 3.880846 CATTTCCAGCCGCGCTCC 61.881 66.667 5.56 0.00 36.40 4.70
91 92 4.543084 GCATTTCCAGCCGCGCTC 62.543 66.667 5.56 0.00 36.40 5.03
93 94 4.543084 GAGCATTTCCAGCCGCGC 62.543 66.667 0.00 0.00 0.00 6.86
94 95 1.089481 TAAGAGCATTTCCAGCCGCG 61.089 55.000 0.00 0.00 0.00 6.46
95 96 0.659957 CTAAGAGCATTTCCAGCCGC 59.340 55.000 0.00 0.00 0.00 6.53
96 97 0.659957 GCTAAGAGCATTTCCAGCCG 59.340 55.000 0.00 0.00 41.89 5.52
97 98 1.028130 GGCTAAGAGCATTTCCAGCC 58.972 55.000 0.21 0.00 44.75 4.85
98 99 1.403323 GTGGCTAAGAGCATTTCCAGC 59.597 52.381 0.21 0.00 44.75 4.85
99 100 1.667724 CGTGGCTAAGAGCATTTCCAG 59.332 52.381 0.21 0.00 44.75 3.86
100 101 1.003118 ACGTGGCTAAGAGCATTTCCA 59.997 47.619 0.21 0.00 44.75 3.53
101 102 1.666189 GACGTGGCTAAGAGCATTTCC 59.334 52.381 0.00 0.00 44.75 3.13
102 103 1.666189 GGACGTGGCTAAGAGCATTTC 59.334 52.381 0.00 0.00 44.75 2.17
103 104 1.279271 AGGACGTGGCTAAGAGCATTT 59.721 47.619 0.00 0.00 44.75 2.32
104 105 0.905357 AGGACGTGGCTAAGAGCATT 59.095 50.000 0.00 0.00 44.75 3.56
105 106 0.176680 CAGGACGTGGCTAAGAGCAT 59.823 55.000 0.00 0.00 44.75 3.79
106 107 1.591703 CAGGACGTGGCTAAGAGCA 59.408 57.895 0.00 0.00 44.75 4.26
107 108 1.811679 GCAGGACGTGGCTAAGAGC 60.812 63.158 0.00 0.00 41.46 4.09
108 109 0.459237 CAGCAGGACGTGGCTAAGAG 60.459 60.000 0.00 0.00 38.56 2.85
109 110 1.591703 CAGCAGGACGTGGCTAAGA 59.408 57.895 0.00 0.00 38.56 2.10
110 111 2.103042 GCAGCAGGACGTGGCTAAG 61.103 63.158 0.00 0.00 38.56 2.18
111 112 2.047274 GCAGCAGGACGTGGCTAA 60.047 61.111 0.00 0.00 38.56 3.09
112 113 2.997315 AGCAGCAGGACGTGGCTA 60.997 61.111 0.00 0.00 38.56 3.93
113 114 4.694233 CAGCAGCAGGACGTGGCT 62.694 66.667 0.00 0.00 42.06 4.75
156 157 3.224324 GTGGATAGCTCCGGGCGA 61.224 66.667 0.00 0.05 45.37 5.54
207 208 0.370273 GTCTACATTGCTTCGTGCCG 59.630 55.000 1.30 0.00 42.00 5.69
211 212 1.271379 TGTCGGTCTACATTGCTTCGT 59.729 47.619 0.00 0.00 0.00 3.85
234 235 3.312989 TTCCCCGTCCTCTCCTCCC 62.313 68.421 0.00 0.00 0.00 4.30
335 336 5.043248 CACCCAAAATCTGTTGTTCTTCAC 58.957 41.667 0.00 0.00 0.00 3.18
345 346 0.527565 GCGCATCACCCAAAATCTGT 59.472 50.000 0.30 0.00 0.00 3.41
416 417 0.389426 AACGACGATTTGGGTCTCCG 60.389 55.000 0.00 0.00 35.24 4.63
541 542 0.519077 GCCAAGAAGACTTCGCCTTG 59.481 55.000 9.53 8.73 34.94 3.61
558 559 2.734673 CGACGCTTGCTCTTCAGCC 61.735 63.158 0.00 0.00 46.26 4.85
1159 1161 4.828829 CCTAGAACCAGTACATTTCGGTT 58.171 43.478 0.00 0.00 44.34 4.44
1525 1528 7.872993 TCTTCTTTCTCTGATACAAAATGACGT 59.127 33.333 0.00 0.00 0.00 4.34
2170 2179 9.229784 CAATCACAATGCATATAAGAAGACAAC 57.770 33.333 0.00 0.00 0.00 3.32
2406 2415 2.346847 GCACACGATGACATCACTCTTC 59.653 50.000 15.58 0.00 0.00 2.87
2427 2436 4.637091 TGTCAGATGCATGGTTAAGATGTG 59.363 41.667 2.46 0.00 0.00 3.21
2437 2446 5.064325 CGTATAATGGATGTCAGATGCATGG 59.936 44.000 2.46 0.00 30.44 3.66
2587 2805 5.778750 GGGGATAGAGTACATTAAGTAGGCA 59.221 44.000 0.00 0.00 32.19 4.75
2624 2842 5.012328 ACGTTTATTGTTTTTGGAAGGCA 57.988 34.783 0.00 0.00 0.00 4.75
2936 3154 4.332819 GTGATAAGTGGTGCTGTGATAACC 59.667 45.833 0.00 0.00 34.38 2.85
2978 3196 6.294731 CCTCAAGTAAAACCAAAGGATCCTTG 60.295 42.308 27.71 17.97 36.26 3.61
3046 3264 4.437390 CGTCTACTTCAATTCCATTGTGGC 60.437 45.833 0.00 0.00 41.02 5.01
3333 3551 0.371645 GTGCAAGTCAGATGTAGCGC 59.628 55.000 0.00 0.00 0.00 5.92
3499 3717 2.238521 TGAGAAAACATGGAGGGCAAC 58.761 47.619 0.00 0.00 0.00 4.17
3708 3926 1.379044 GGGGTCCAGCACCTGAATG 60.379 63.158 0.00 0.00 45.95 2.67
4234 4455 2.372172 AGGTTGTTTCCAGGACTCGAAT 59.628 45.455 0.00 0.00 0.00 3.34
4734 4963 8.209917 AGATGGAAACGTGTTATTATCTTTCC 57.790 34.615 0.00 0.00 37.99 3.13
4823 5053 8.865590 ACGTTTGCCAATACCAAATAAATATC 57.134 30.769 0.00 0.00 34.99 1.63
4860 5090 7.016153 ACTAACAGAAACTCATTCCCATACA 57.984 36.000 0.00 0.00 38.94 2.29
4865 5095 4.762251 AGCAACTAACAGAAACTCATTCCC 59.238 41.667 0.00 0.00 38.94 3.97
5067 5297 2.638480 TGTCCTTGTCCTTGTCCTTG 57.362 50.000 0.00 0.00 0.00 3.61
5068 5298 2.158608 CCTTGTCCTTGTCCTTGTCCTT 60.159 50.000 0.00 0.00 0.00 3.36
5069 5299 1.421646 CCTTGTCCTTGTCCTTGTCCT 59.578 52.381 0.00 0.00 0.00 3.85
5070 5300 1.420138 TCCTTGTCCTTGTCCTTGTCC 59.580 52.381 0.00 0.00 0.00 4.02
5071 5301 2.930826 TCCTTGTCCTTGTCCTTGTC 57.069 50.000 0.00 0.00 0.00 3.18
5072 5302 2.443255 ACATCCTTGTCCTTGTCCTTGT 59.557 45.455 0.00 0.00 0.00 3.16
5073 5303 3.077359 GACATCCTTGTCCTTGTCCTTG 58.923 50.000 0.00 0.00 45.45 3.61
5074 5304 3.425162 GACATCCTTGTCCTTGTCCTT 57.575 47.619 0.00 0.00 45.45 3.36
5084 5314 3.906846 AGTTTCCTCAGAGACATCCTTGT 59.093 43.478 0.00 0.00 39.32 3.16
5085 5315 4.020751 TCAGTTTCCTCAGAGACATCCTTG 60.021 45.833 0.00 0.00 29.47 3.61
5239 5469 9.830294 GCTTAAAATTGATTGGGAATTTTGAAG 57.170 29.630 11.60 11.26 41.12 3.02
5623 5859 2.435372 TTCTTTGCCAGTTCCAGTGT 57.565 45.000 0.00 0.00 0.00 3.55
5797 6033 2.473070 TCTTCCGATTATGACCACCCA 58.527 47.619 0.00 0.00 0.00 4.51
5866 6102 7.437713 TGAACTTATGTGGGATACAGAGAAT 57.562 36.000 0.00 0.00 43.80 2.40
5982 6218 6.552445 ACTTCTGTGGCTACAATATTCTCT 57.448 37.500 3.88 0.00 36.14 3.10
6104 6503 5.181433 GGGGTGACTTGTTTGTCTCTTATTC 59.819 44.000 0.00 0.00 37.79 1.75
6112 6511 2.693074 ACAATGGGGTGACTTGTTTGTC 59.307 45.455 0.00 0.00 37.47 3.18
6113 6512 2.745968 ACAATGGGGTGACTTGTTTGT 58.254 42.857 0.00 0.00 29.06 2.83
6122 6521 3.885976 TTAAGTGGAACAATGGGGTGA 57.114 42.857 0.00 0.00 44.16 4.02
6280 6679 7.977853 CCATTTCATTAGCTTCTTTTACAGCAT 59.022 33.333 0.00 0.00 38.61 3.79
6317 6716 7.286087 ACAACCGGAGTTTTTCCTTACTTTTAT 59.714 33.333 9.46 0.00 44.41 1.40
6324 6723 3.479489 GGACAACCGGAGTTTTTCCTTA 58.521 45.455 9.46 0.00 44.41 2.69
6332 6731 3.581265 TTTTTAGGGACAACCGGAGTT 57.419 42.857 9.46 0.00 46.96 3.01
6365 6764 5.407691 CGAACTACTCTTCTTTAACCCAACC 59.592 44.000 0.00 0.00 0.00 3.77
6366 6765 5.407691 CCGAACTACTCTTCTTTAACCCAAC 59.592 44.000 0.00 0.00 0.00 3.77
6367 6766 5.070847 ACCGAACTACTCTTCTTTAACCCAA 59.929 40.000 0.00 0.00 0.00 4.12
6368 6767 4.590222 ACCGAACTACTCTTCTTTAACCCA 59.410 41.667 0.00 0.00 0.00 4.51
6369 6768 5.144692 ACCGAACTACTCTTCTTTAACCC 57.855 43.478 0.00 0.00 0.00 4.11
6370 6769 5.636965 GGAACCGAACTACTCTTCTTTAACC 59.363 44.000 0.00 0.00 0.00 2.85
6371 6770 5.344396 CGGAACCGAACTACTCTTCTTTAAC 59.656 44.000 7.53 0.00 42.83 2.01
6372 6771 5.241506 TCGGAACCGAACTACTCTTCTTTAA 59.758 40.000 13.65 0.00 46.01 1.52
6373 6772 4.761739 TCGGAACCGAACTACTCTTCTTTA 59.238 41.667 13.65 0.00 46.01 1.85
6374 6773 3.571401 TCGGAACCGAACTACTCTTCTTT 59.429 43.478 13.65 0.00 46.01 2.52
6375 6774 3.152341 TCGGAACCGAACTACTCTTCTT 58.848 45.455 13.65 0.00 46.01 2.52
6376 6775 2.787994 TCGGAACCGAACTACTCTTCT 58.212 47.619 13.65 0.00 46.01 2.85
6387 6786 2.159071 TCTGTTTTGAACTCGGAACCGA 60.159 45.455 15.13 15.13 46.87 4.69
6388 6787 2.206750 TCTGTTTTGAACTCGGAACCG 58.793 47.619 6.94 6.94 41.35 4.44
6389 6788 4.274950 TCAATCTGTTTTGAACTCGGAACC 59.725 41.667 0.00 0.00 32.82 3.62
6390 6789 5.418310 TCAATCTGTTTTGAACTCGGAAC 57.582 39.130 0.00 0.00 32.82 3.62
6398 6797 3.181492 TGCGCAGTTCAATCTGTTTTGAA 60.181 39.130 5.66 5.02 41.92 2.69
6399 6798 2.357323 TGCGCAGTTCAATCTGTTTTGA 59.643 40.909 5.66 0.00 37.70 2.69
6400 6799 2.722629 CTGCGCAGTTCAATCTGTTTTG 59.277 45.455 29.24 0.00 37.70 2.44
6401 6800 2.618241 TCTGCGCAGTTCAATCTGTTTT 59.382 40.909 34.70 0.00 37.70 2.43
6402 6801 2.221169 TCTGCGCAGTTCAATCTGTTT 58.779 42.857 34.70 0.00 37.70 2.83
6403 6802 1.802960 CTCTGCGCAGTTCAATCTGTT 59.197 47.619 34.70 0.00 37.70 3.16
6404 6803 1.436600 CTCTGCGCAGTTCAATCTGT 58.563 50.000 34.70 0.00 37.70 3.41
6405 6804 0.725686 CCTCTGCGCAGTTCAATCTG 59.274 55.000 34.70 15.63 38.35 2.90
6406 6805 0.610174 TCCTCTGCGCAGTTCAATCT 59.390 50.000 34.70 0.00 0.00 2.40
6407 6806 1.661341 ATCCTCTGCGCAGTTCAATC 58.339 50.000 34.70 0.00 0.00 2.67
6408 6807 2.012673 GAATCCTCTGCGCAGTTCAAT 58.987 47.619 34.70 20.96 0.00 2.57
6409 6808 1.002430 AGAATCCTCTGCGCAGTTCAA 59.998 47.619 34.70 19.74 0.00 2.69
6410 6809 0.610174 AGAATCCTCTGCGCAGTTCA 59.390 50.000 34.70 20.27 0.00 3.18
6411 6810 1.396301 CAAGAATCCTCTGCGCAGTTC 59.604 52.381 34.70 28.49 30.03 3.01
6412 6811 1.271054 ACAAGAATCCTCTGCGCAGTT 60.271 47.619 34.70 22.67 30.03 3.16
6413 6812 0.322975 ACAAGAATCCTCTGCGCAGT 59.677 50.000 34.70 17.37 30.03 4.40
6414 6813 0.725686 CACAAGAATCCTCTGCGCAG 59.274 55.000 31.53 31.53 30.03 5.18
6415 6814 0.674581 CCACAAGAATCCTCTGCGCA 60.675 55.000 10.98 10.98 30.03 6.09
6416 6815 1.372087 CCCACAAGAATCCTCTGCGC 61.372 60.000 0.00 0.00 30.03 6.09
6417 6816 0.250234 TCCCACAAGAATCCTCTGCG 59.750 55.000 0.00 0.00 30.03 5.18
6418 6817 2.363683 CTTCCCACAAGAATCCTCTGC 58.636 52.381 0.00 0.00 30.03 4.26
6419 6818 2.356535 CCCTTCCCACAAGAATCCTCTG 60.357 54.545 0.00 0.00 30.03 3.35
6420 6819 1.918957 CCCTTCCCACAAGAATCCTCT 59.081 52.381 0.00 0.00 0.00 3.69
6421 6820 1.916181 TCCCTTCCCACAAGAATCCTC 59.084 52.381 0.00 0.00 0.00 3.71
6422 6821 2.059756 TCCCTTCCCACAAGAATCCT 57.940 50.000 0.00 0.00 0.00 3.24
6423 6822 2.621668 CCTTCCCTTCCCACAAGAATCC 60.622 54.545 0.00 0.00 0.00 3.01
6424 6823 2.308866 TCCTTCCCTTCCCACAAGAATC 59.691 50.000 0.00 0.00 0.00 2.52
6425 6824 2.310052 CTCCTTCCCTTCCCACAAGAAT 59.690 50.000 0.00 0.00 0.00 2.40
6426 6825 1.705186 CTCCTTCCCTTCCCACAAGAA 59.295 52.381 0.00 0.00 0.00 2.52
6427 6826 1.362224 CTCCTTCCCTTCCCACAAGA 58.638 55.000 0.00 0.00 0.00 3.02
6428 6827 0.322906 GCTCCTTCCCTTCCCACAAG 60.323 60.000 0.00 0.00 0.00 3.16
6429 6828 0.772124 AGCTCCTTCCCTTCCCACAA 60.772 55.000 0.00 0.00 0.00 3.33
6430 6829 1.151810 AGCTCCTTCCCTTCCCACA 60.152 57.895 0.00 0.00 0.00 4.17
6431 6830 1.604915 GAGCTCCTTCCCTTCCCAC 59.395 63.158 0.87 0.00 0.00 4.61
6432 6831 1.990060 CGAGCTCCTTCCCTTCCCA 60.990 63.158 8.47 0.00 0.00 4.37
6433 6832 2.904131 CGAGCTCCTTCCCTTCCC 59.096 66.667 8.47 0.00 0.00 3.97
6434 6833 2.185310 TTGCGAGCTCCTTCCCTTCC 62.185 60.000 8.47 0.00 0.00 3.46
6435 6834 0.321653 TTTGCGAGCTCCTTCCCTTC 60.322 55.000 8.47 0.00 0.00 3.46
6436 6835 0.329596 ATTTGCGAGCTCCTTCCCTT 59.670 50.000 8.47 0.00 0.00 3.95
6437 6836 0.393537 CATTTGCGAGCTCCTTCCCT 60.394 55.000 8.47 0.00 0.00 4.20
6438 6837 1.379642 CCATTTGCGAGCTCCTTCCC 61.380 60.000 8.47 0.00 0.00 3.97
6439 6838 0.678048 ACCATTTGCGAGCTCCTTCC 60.678 55.000 8.47 0.00 0.00 3.46
6440 6839 0.449388 CACCATTTGCGAGCTCCTTC 59.551 55.000 8.47 0.00 0.00 3.46
6441 6840 0.962356 CCACCATTTGCGAGCTCCTT 60.962 55.000 8.47 0.00 0.00 3.36
6442 6841 1.377725 CCACCATTTGCGAGCTCCT 60.378 57.895 8.47 0.00 0.00 3.69
6443 6842 2.409870 CCCACCATTTGCGAGCTCC 61.410 63.158 8.47 1.40 0.00 4.70
6444 6843 0.960364 TTCCCACCATTTGCGAGCTC 60.960 55.000 2.73 2.73 0.00 4.09
6445 6844 0.962356 CTTCCCACCATTTGCGAGCT 60.962 55.000 0.00 0.00 0.00 4.09
6446 6845 1.244019 ACTTCCCACCATTTGCGAGC 61.244 55.000 0.00 0.00 0.00 5.03
6447 6846 0.523072 CACTTCCCACCATTTGCGAG 59.477 55.000 0.00 0.00 0.00 5.03
6448 6847 1.523154 GCACTTCCCACCATTTGCGA 61.523 55.000 0.00 0.00 0.00 5.10
6449 6848 1.080569 GCACTTCCCACCATTTGCG 60.081 57.895 0.00 0.00 0.00 4.85
6450 6849 1.187567 AGGCACTTCCCACCATTTGC 61.188 55.000 0.00 0.00 27.25 3.68
6451 6850 0.604578 CAGGCACTTCCCACCATTTG 59.395 55.000 0.00 0.00 34.60 2.32
6452 6851 0.542702 CCAGGCACTTCCCACCATTT 60.543 55.000 0.00 0.00 34.60 2.32
6453 6852 1.077265 CCAGGCACTTCCCACCATT 59.923 57.895 0.00 0.00 34.60 3.16
6454 6853 1.729267 AACCAGGCACTTCCCACCAT 61.729 55.000 0.00 0.00 34.60 3.55
6455 6854 1.063070 TAACCAGGCACTTCCCACCA 61.063 55.000 0.00 0.00 34.60 4.17
6456 6855 0.322546 CTAACCAGGCACTTCCCACC 60.323 60.000 0.00 0.00 34.60 4.61
6457 6856 0.960861 GCTAACCAGGCACTTCCCAC 60.961 60.000 0.00 0.00 34.60 4.61
6458 6857 1.133809 AGCTAACCAGGCACTTCCCA 61.134 55.000 0.00 0.00 34.60 4.37
6459 6858 0.678048 CAGCTAACCAGGCACTTCCC 60.678 60.000 0.00 0.00 34.60 3.97
6460 6859 0.678048 CCAGCTAACCAGGCACTTCC 60.678 60.000 0.00 0.00 34.60 3.46
6461 6860 0.324943 TCCAGCTAACCAGGCACTTC 59.675 55.000 0.00 0.00 34.60 3.01
6462 6861 0.771127 TTCCAGCTAACCAGGCACTT 59.229 50.000 0.00 0.00 34.60 3.16
6463 6862 0.771127 TTTCCAGCTAACCAGGCACT 59.229 50.000 0.00 0.00 43.88 4.40
6464 6863 1.168714 CTTTCCAGCTAACCAGGCAC 58.831 55.000 0.00 0.00 0.00 5.01
6465 6864 0.771127 ACTTTCCAGCTAACCAGGCA 59.229 50.000 0.00 0.00 0.00 4.75
6466 6865 1.168714 CACTTTCCAGCTAACCAGGC 58.831 55.000 0.00 0.00 0.00 4.85
6467 6866 1.073923 ACCACTTTCCAGCTAACCAGG 59.926 52.381 0.00 0.00 0.00 4.45
6468 6867 2.568623 ACCACTTTCCAGCTAACCAG 57.431 50.000 0.00 0.00 0.00 4.00
6469 6868 2.955660 CAAACCACTTTCCAGCTAACCA 59.044 45.455 0.00 0.00 0.00 3.67
6470 6869 2.288213 GCAAACCACTTTCCAGCTAACC 60.288 50.000 0.00 0.00 0.00 2.85
6471 6870 2.288213 GGCAAACCACTTTCCAGCTAAC 60.288 50.000 0.00 0.00 35.26 2.34
6472 6871 1.960689 GGCAAACCACTTTCCAGCTAA 59.039 47.619 0.00 0.00 35.26 3.09
6473 6872 1.616159 GGCAAACCACTTTCCAGCTA 58.384 50.000 0.00 0.00 35.26 3.32
6474 6873 1.455383 CGGCAAACCACTTTCCAGCT 61.455 55.000 0.00 0.00 34.57 4.24
6475 6874 1.007387 CGGCAAACCACTTTCCAGC 60.007 57.895 0.00 0.00 34.57 4.85
6476 6875 1.659794 CCGGCAAACCACTTTCCAG 59.340 57.895 0.00 0.00 34.57 3.86
6477 6876 2.494530 GCCGGCAAACCACTTTCCA 61.495 57.895 24.80 0.00 34.57 3.53
6478 6877 2.338620 GCCGGCAAACCACTTTCC 59.661 61.111 24.80 0.00 34.57 3.13
6479 6878 2.338620 GGCCGGCAAACCACTTTC 59.661 61.111 30.85 1.84 34.57 2.62
6480 6879 3.601685 CGGCCGGCAAACCACTTT 61.602 61.111 30.85 0.00 34.57 2.66
6481 6880 4.572571 TCGGCCGGCAAACCACTT 62.573 61.111 30.85 0.00 34.57 3.16
6508 6907 1.133761 GGTCTGAAATTCCTAGCCCCC 60.134 57.143 0.00 0.00 0.00 5.40
6509 6908 1.847088 AGGTCTGAAATTCCTAGCCCC 59.153 52.381 0.00 0.00 0.00 5.80
6510 6909 2.505819 TGAGGTCTGAAATTCCTAGCCC 59.494 50.000 0.00 0.00 0.00 5.19
6511 6910 3.055094 TGTGAGGTCTGAAATTCCTAGCC 60.055 47.826 0.00 0.00 0.00 3.93
6512 6911 4.187694 CTGTGAGGTCTGAAATTCCTAGC 58.812 47.826 0.00 0.00 0.00 3.42
6513 6912 4.187694 GCTGTGAGGTCTGAAATTCCTAG 58.812 47.826 0.00 0.00 0.00 3.02
6514 6913 3.582647 TGCTGTGAGGTCTGAAATTCCTA 59.417 43.478 0.00 0.00 0.00 2.94
6515 6914 2.373169 TGCTGTGAGGTCTGAAATTCCT 59.627 45.455 0.00 0.00 0.00 3.36
6516 6915 2.485814 GTGCTGTGAGGTCTGAAATTCC 59.514 50.000 0.00 0.00 0.00 3.01
6517 6916 3.141398 TGTGCTGTGAGGTCTGAAATTC 58.859 45.455 0.00 0.00 0.00 2.17
6518 6917 3.144506 CTGTGCTGTGAGGTCTGAAATT 58.855 45.455 0.00 0.00 0.00 1.82
6519 6918 2.369860 TCTGTGCTGTGAGGTCTGAAAT 59.630 45.455 0.00 0.00 0.00 2.17
6520 6919 1.762370 TCTGTGCTGTGAGGTCTGAAA 59.238 47.619 0.00 0.00 0.00 2.69
6521 6920 1.342496 CTCTGTGCTGTGAGGTCTGAA 59.658 52.381 0.00 0.00 0.00 3.02
6522 6921 0.964700 CTCTGTGCTGTGAGGTCTGA 59.035 55.000 0.00 0.00 0.00 3.27
6523 6922 0.678395 ACTCTGTGCTGTGAGGTCTG 59.322 55.000 0.00 0.00 34.84 3.51
6524 6923 2.294449 TACTCTGTGCTGTGAGGTCT 57.706 50.000 0.00 0.00 34.84 3.85
6525 6924 3.257393 CAATACTCTGTGCTGTGAGGTC 58.743 50.000 0.00 0.00 34.84 3.85
6526 6925 2.613977 GCAATACTCTGTGCTGTGAGGT 60.614 50.000 0.00 0.00 37.78 3.85
6527 6926 2.005451 GCAATACTCTGTGCTGTGAGG 58.995 52.381 0.00 0.00 37.78 3.86
6528 6927 2.005451 GGCAATACTCTGTGCTGTGAG 58.995 52.381 0.00 0.00 40.70 3.51
6529 6928 1.625315 AGGCAATACTCTGTGCTGTGA 59.375 47.619 0.00 0.00 40.70 3.58
6530 6929 2.105006 AGGCAATACTCTGTGCTGTG 57.895 50.000 0.00 0.00 40.70 3.66
6531 6930 2.430465 CAAGGCAATACTCTGTGCTGT 58.570 47.619 0.00 0.00 40.70 4.40
6532 6931 1.131883 GCAAGGCAATACTCTGTGCTG 59.868 52.381 0.00 0.00 40.70 4.41
6533 6932 1.457346 GCAAGGCAATACTCTGTGCT 58.543 50.000 0.00 0.00 40.70 4.40
6534 6933 0.097674 CGCAAGGCAATACTCTGTGC 59.902 55.000 0.00 0.00 40.14 4.57
6548 6947 2.898840 ATCCATCGCAGCCGCAAG 60.899 61.111 0.00 0.00 38.40 4.01
6549 6948 3.204119 CATCCATCGCAGCCGCAA 61.204 61.111 0.00 0.00 38.40 4.85
6550 6949 4.471908 ACATCCATCGCAGCCGCA 62.472 61.111 0.00 0.00 38.40 5.69
6551 6950 3.945434 CACATCCATCGCAGCCGC 61.945 66.667 0.00 0.00 0.00 6.53
6552 6951 3.274586 CCACATCCATCGCAGCCG 61.275 66.667 0.00 0.00 0.00 5.52
6553 6952 1.228063 ATCCACATCCATCGCAGCC 60.228 57.895 0.00 0.00 0.00 4.85
6554 6953 1.947013 CATCCACATCCATCGCAGC 59.053 57.895 0.00 0.00 0.00 5.25
6555 6954 0.816421 TGCATCCACATCCATCGCAG 60.816 55.000 0.00 0.00 0.00 5.18
6556 6955 1.096967 GTGCATCCACATCCATCGCA 61.097 55.000 0.00 0.00 41.67 5.10
6557 6956 0.816825 AGTGCATCCACATCCATCGC 60.817 55.000 0.00 0.00 44.53 4.58
6558 6957 0.942252 CAGTGCATCCACATCCATCG 59.058 55.000 0.00 0.00 44.53 3.84
6559 6958 1.134007 TCCAGTGCATCCACATCCATC 60.134 52.381 0.00 0.00 44.53 3.51
6560 6959 0.921166 TCCAGTGCATCCACATCCAT 59.079 50.000 0.00 0.00 44.53 3.41
6561 6960 0.035152 GTCCAGTGCATCCACATCCA 60.035 55.000 0.00 0.00 44.53 3.41
6562 6961 0.254178 AGTCCAGTGCATCCACATCC 59.746 55.000 0.00 0.00 44.53 3.51
6563 6962 1.065926 TCAGTCCAGTGCATCCACATC 60.066 52.381 0.00 0.00 44.53 3.06
6564 6963 0.986527 TCAGTCCAGTGCATCCACAT 59.013 50.000 0.00 0.00 44.53 3.21
6565 6964 0.035317 GTCAGTCCAGTGCATCCACA 59.965 55.000 0.00 0.00 44.53 4.17
6566 6965 0.674895 GGTCAGTCCAGTGCATCCAC 60.675 60.000 0.00 0.00 42.39 4.02
6567 6966 1.679311 GGTCAGTCCAGTGCATCCA 59.321 57.895 0.00 0.00 35.97 3.41
6568 6967 1.078143 GGGTCAGTCCAGTGCATCC 60.078 63.158 0.00 0.00 38.11 3.51
6569 6968 1.448540 CGGGTCAGTCCAGTGCATC 60.449 63.158 0.00 0.00 38.11 3.91
6570 6969 2.665000 CGGGTCAGTCCAGTGCAT 59.335 61.111 0.00 0.00 38.11 3.96
6571 6970 3.625897 CCGGGTCAGTCCAGTGCA 61.626 66.667 0.00 0.00 38.11 4.57
6572 6971 3.311110 TCCGGGTCAGTCCAGTGC 61.311 66.667 0.00 0.00 38.11 4.40
6573 6972 1.754380 TTGTCCGGGTCAGTCCAGTG 61.754 60.000 0.00 0.00 38.11 3.66
6574 6973 1.458777 TTGTCCGGGTCAGTCCAGT 60.459 57.895 0.00 0.00 38.11 4.00
6575 6974 1.293498 CTTGTCCGGGTCAGTCCAG 59.707 63.158 0.00 0.00 38.11 3.86
6576 6975 2.214216 CCTTGTCCGGGTCAGTCCA 61.214 63.158 0.00 0.00 38.11 4.02
6577 6976 2.663196 CCTTGTCCGGGTCAGTCC 59.337 66.667 0.00 0.00 0.00 3.85
6578 6977 2.047179 GCCTTGTCCGGGTCAGTC 60.047 66.667 0.00 0.00 0.00 3.51
6579 6978 3.637273 GGCCTTGTCCGGGTCAGT 61.637 66.667 0.00 0.00 0.00 3.41
6580 6979 3.322466 AGGCCTTGTCCGGGTCAG 61.322 66.667 0.00 0.00 0.00 3.51
6581 6980 3.636231 CAGGCCTTGTCCGGGTCA 61.636 66.667 0.00 0.00 0.00 4.02
6582 6981 4.410400 CCAGGCCTTGTCCGGGTC 62.410 72.222 0.00 0.00 36.81 4.46
6583 6982 4.974438 TCCAGGCCTTGTCCGGGT 62.974 66.667 0.00 0.00 41.47 5.28
6584 6983 4.101448 CTCCAGGCCTTGTCCGGG 62.101 72.222 0.00 0.00 42.01 5.73
6585 6984 3.322466 ACTCCAGGCCTTGTCCGG 61.322 66.667 0.00 0.00 0.00 5.14
6586 6985 2.046892 CACTCCAGGCCTTGTCCG 60.047 66.667 0.00 0.00 0.00 4.79
6587 6986 2.352805 CCACTCCAGGCCTTGTCC 59.647 66.667 0.00 0.00 0.00 4.02
6595 6994 2.125106 GCGGTAAGCCACTCCAGG 60.125 66.667 0.00 0.00 40.81 4.45
6605 7004 1.153549 GTCAGAGGGCAGCGGTAAG 60.154 63.158 0.00 0.00 0.00 2.34
6606 7005 2.656069 GGTCAGAGGGCAGCGGTAA 61.656 63.158 0.00 0.00 0.00 2.85
6607 7006 3.075005 GGTCAGAGGGCAGCGGTA 61.075 66.667 0.00 0.00 0.00 4.02
6611 7010 3.635268 CTTGGGGTCAGAGGGCAGC 62.635 68.421 0.00 0.00 0.00 5.25
6612 7011 2.673523 CTTGGGGTCAGAGGGCAG 59.326 66.667 0.00 0.00 0.00 4.85
6613 7012 2.935481 CCTTGGGGTCAGAGGGCA 60.935 66.667 0.00 0.00 0.00 5.36
6614 7013 2.936032 ACCTTGGGGTCAGAGGGC 60.936 66.667 0.00 0.00 43.38 5.19
6615 7014 3.081554 CACCTTGGGGTCAGAGGG 58.918 66.667 0.00 0.00 45.41 4.30
6616 7015 2.227036 AGCACCTTGGGGTCAGAGG 61.227 63.158 0.00 0.00 45.41 3.69
6617 7016 1.002868 CAGCACCTTGGGGTCAGAG 60.003 63.158 0.00 0.00 45.41 3.35
6618 7017 1.059584 TTCAGCACCTTGGGGTCAGA 61.060 55.000 0.00 0.00 45.41 3.27
6619 7018 0.890996 GTTCAGCACCTTGGGGTCAG 60.891 60.000 0.00 0.00 45.41 3.51
6620 7019 1.150536 GTTCAGCACCTTGGGGTCA 59.849 57.895 0.00 0.00 45.41 4.02
6621 7020 1.603739 GGTTCAGCACCTTGGGGTC 60.604 63.158 0.00 0.00 45.41 4.46
6630 7029 0.179163 GCCGCAAATAGGTTCAGCAC 60.179 55.000 0.00 0.00 0.00 4.40
6631 7030 1.312371 GGCCGCAAATAGGTTCAGCA 61.312 55.000 0.00 0.00 0.00 4.41
6632 7031 1.032114 AGGCCGCAAATAGGTTCAGC 61.032 55.000 0.00 0.00 0.00 4.26
6633 7032 1.017387 GAGGCCGCAAATAGGTTCAG 58.983 55.000 0.00 0.00 0.00 3.02
6634 7033 0.326595 TGAGGCCGCAAATAGGTTCA 59.673 50.000 6.75 0.00 0.00 3.18
6635 7034 1.017387 CTGAGGCCGCAAATAGGTTC 58.983 55.000 11.38 0.00 0.00 3.62
6636 7035 1.032114 GCTGAGGCCGCAAATAGGTT 61.032 55.000 11.38 0.00 0.00 3.50
6637 7036 1.452108 GCTGAGGCCGCAAATAGGT 60.452 57.895 11.38 0.00 0.00 3.08
6638 7037 3.425422 GCTGAGGCCGCAAATAGG 58.575 61.111 11.38 0.00 0.00 2.57
6648 7047 1.452833 GGTGGAATCTGGCTGAGGC 60.453 63.158 0.00 0.00 37.82 4.70
6649 7048 0.179936 GAGGTGGAATCTGGCTGAGG 59.820 60.000 0.00 0.00 0.00 3.86
6650 7049 0.179089 CGAGGTGGAATCTGGCTGAG 60.179 60.000 0.00 0.00 0.00 3.35
6651 7050 1.617018 CCGAGGTGGAATCTGGCTGA 61.617 60.000 0.00 0.00 42.00 4.26
6652 7051 1.153289 CCGAGGTGGAATCTGGCTG 60.153 63.158 0.00 0.00 42.00 4.85
6653 7052 3.036429 GCCGAGGTGGAATCTGGCT 62.036 63.158 0.00 0.00 42.00 4.75
6654 7053 2.514824 GCCGAGGTGGAATCTGGC 60.515 66.667 0.00 0.00 42.00 4.85
6655 7054 2.032860 ATCGCCGAGGTGGAATCTGG 62.033 60.000 2.57 0.00 42.00 3.86
6656 7055 0.877649 CATCGCCGAGGTGGAATCTG 60.878 60.000 2.57 0.00 42.00 2.90
6657 7056 1.443407 CATCGCCGAGGTGGAATCT 59.557 57.895 2.57 0.00 42.00 2.40
6658 7057 4.033894 CATCGCCGAGGTGGAATC 57.966 61.111 2.57 0.00 42.00 2.52
6663 7062 2.100631 GTTGACCATCGCCGAGGTG 61.101 63.158 11.99 0.00 38.50 4.00
6664 7063 2.264794 GTTGACCATCGCCGAGGT 59.735 61.111 7.77 7.77 41.83 3.85
6665 7064 2.274232 TACGTTGACCATCGCCGAGG 62.274 60.000 0.00 0.00 0.00 4.63
6666 7065 0.248907 ATACGTTGACCATCGCCGAG 60.249 55.000 0.00 0.00 0.00 4.63
6667 7066 0.248743 GATACGTTGACCATCGCCGA 60.249 55.000 0.00 0.00 0.00 5.54
6668 7067 0.526739 TGATACGTTGACCATCGCCG 60.527 55.000 0.00 0.00 0.00 6.46
6669 7068 1.209128 CTGATACGTTGACCATCGCC 58.791 55.000 0.00 0.00 0.00 5.54
6670 7069 1.209128 CCTGATACGTTGACCATCGC 58.791 55.000 0.00 0.00 0.00 4.58
6671 7070 2.579207 ACCTGATACGTTGACCATCG 57.421 50.000 0.00 0.00 0.00 3.84
6672 7071 4.124851 AGAACCTGATACGTTGACCATC 57.875 45.455 0.00 0.00 0.00 3.51
6673 7072 5.263968 CTAGAACCTGATACGTTGACCAT 57.736 43.478 0.00 0.00 0.00 3.55
6674 7073 4.713824 CTAGAACCTGATACGTTGACCA 57.286 45.455 0.00 0.00 0.00 4.02


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.