AutoCloner

Multiple sequence alignment - TraesCS2A01G219300

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Download Multiple Sequence Alignment: (Fasta) (Clustal)

BLAST Results

Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

	qseqid	sseqid	percentage.identical	alignment.length	no.mismatch	no.gap.openings	qstart	qend	sstart	send	evalue	bitscore
0	TraesCS2A01G219300	chr2A	100.000	6292	0	0	1	6292	206447530	206441239	0.000000e+00	11620.0
1	TraesCS2A01G219300	chr2A	95.745	94	4	0	6199	6292	677416248	677416341	1.090000e-32	152.0
2	TraesCS2A01G219300	chr2A	95.946	74	3	0	3774	3847	761552021	761551948	3.080000e-23	121.0
3	TraesCS2A01G219300	chr2B	97.571	1729	29	7	3835	5558	248693857	248692137	0.000000e+00	2948.0
4	TraesCS2A01G219300	chr2B	93.641	1321	53	10	782	2092	248697557	248696258	0.000000e+00	1945.0
5	TraesCS2A01G219300	chr2B	92.400	829	47	7	2090	2917	248695020	248694207	0.000000e+00	1168.0
6	TraesCS2A01G219300	chr2B	92.621	515	34	2	5556	6066	456622394	456621880	0.000000e+00	737.0
7	TraesCS2A01G219300	chr2B	92.445	503	34	2	5557	6056	20083375	20082874	0.000000e+00	715.0
8	TraesCS2A01G219300	chr2B	86.212	631	56	6	1	601	248698271	248697642	0.000000e+00	654.0
9	TraesCS2A01G219300	chr2B	93.681	364	18	5	3030	3389	248694209	248693847	2.000000e-149	540.0
10	TraesCS2A01G219300	chr2B	96.476	227	7	1	3370	3596	619397637	619397862	2.140000e-99	374.0
11	TraesCS2A01G219300	chr2B	96.891	193	3	3	3584	3774	694263446	694263255	2.830000e-83	320.0
12	TraesCS2A01G219300	chr2B	83.843	229	27	5	41	264	458628939	458629162	6.390000e-50	209.0
13	TraesCS2A01G219300	chr2B	89.441	161	15	2	626	785	627873559	627873718	1.070000e-47	202.0
14	TraesCS2A01G219300	chr2B	90.826	109	7	3	6187	6292	573942029	573942137	6.580000e-30	143.0
15	TraesCS2A01G219300	chr2D	97.131	1673	38	5	3835	5506	190998837	191000500	0.000000e+00	2815.0
16	TraesCS2A01G219300	chr2D	96.765	1051	33	1	911	1961	190993159	190994208	0.000000e+00	1751.0
17	TraesCS2A01G219300	chr2D	93.151	803	41	6	2013	2814	190994207	190994996	0.000000e+00	1166.0
18	TraesCS2A01G219300	chr2D	89.237	511	34	2	5558	6065	61763905	61763413	2.490000e-173	619.0
19	TraesCS2A01G219300	chr2D	93.146	321	17	2	3024	3344	190998511	190998826	3.440000e-127	466.0
20	TraesCS2A01G219300	chr2D	89.375	160	15	2	5556	5714	10528854	10528696	3.850000e-47	200.0
21	TraesCS2A01G219300	chr2D	96.610	118	4	0	2914	3031	377306008	377306125	4.980000e-46	196.0
22	TraesCS2A01G219300	chr2D	95.833	120	5	0	2914	3033	441576672	441576791	1.790000e-45	195.0
23	TraesCS2A01G219300	chr2D	83.333	210	28	4	41	245	387563884	387564091	2.990000e-43	187.0
24	TraesCS2A01G219300	chr2D	96.739	92	2	1	2826	2917	190998429	190998519	1.090000e-32	152.0
25	TraesCS2A01G219300	chr7A	96.055	507	17	1	5555	6058	63316777	63316271	0.000000e+00	822.0
26	TraesCS2A01G219300	chr7A	98.605	215	2	1	3382	3596	9210710	9210497	4.600000e-101	379.0
27	TraesCS2A01G219300	chr7A	98.592	71	0	1	3774	3844	9209002	9208933	2.380000e-24	124.0
28	TraesCS2A01G219300	chr7A	98.592	71	0	1	3774	3844	9210514	9210445	2.380000e-24	124.0
29	TraesCS2A01G219300	chr5B	90.945	508	37	3	5555	6058	273144718	273144216	0.000000e+00	675.0
30	TraesCS2A01G219300	chr5B	99.448	181	1	0	3593	3773	147439628	147439808	4.700000e-86	329.0
31	TraesCS2A01G219300	chr5B	96.392	194	4	2	3581	3774	275239655	275239845	3.660000e-82	316.0
32	TraesCS2A01G219300	chr5B	89.506	162	15	2	625	785	43067525	43067685	2.970000e-48	204.0
33	TraesCS2A01G219300	chr3B	88.713	505	33	7	5557	6058	805818610	805818127	4.200000e-166	595.0
34	TraesCS2A01G219300	chr3B	98.925	186	2	0	3589	3774	271822374	271822559	3.640000e-87	333.0
35	TraesCS2A01G219300	chr3B	90.506	158	14	1	628	785	191186706	191186550	2.300000e-49	207.0
36	TraesCS2A01G219300	chr3B	80.804	224	35	6	38	260	140134351	140134567	1.080000e-37	169.0
37	TraesCS2A01G219300	chr3B	88.462	52	4	2	5558	5608	429950178	429950228	1.890000e-05	62.1
38	TraesCS2A01G219300	chr4A	88.560	507	34	7	5555	6058	661540443	661540928	1.510000e-165	593.0
39	TraesCS2A01G219300	chr4A	98.174	219	3	1	3378	3596	450302	450519	1.280000e-101	381.0
40	TraesCS2A01G219300	chr4A	98.901	182	2	0	3596	3777	97981637	97981456	6.080000e-85	326.0
41	TraesCS2A01G219300	chr4A	99.438	178	1	0	3597	3774	420020558	420020381	2.190000e-84	324.0
42	TraesCS2A01G219300	chr4A	79.866	298	54	5	5763	6056	58558698	58558403	4.940000e-51	213.0
43	TraesCS2A01G219300	chr3A	99.074	216	2	0	3381	3596	394385385	394385170	7.650000e-104	388.0
44	TraesCS2A01G219300	chr3A	95.946	74	2	1	3774	3847	15125125	15125197	1.110000e-22	119.0
45	TraesCS2A01G219300	chr3A	95.946	74	2	1	3774	3847	15144863	15144935	1.110000e-22	119.0
46	TraesCS2A01G219300	chr3A	95.946	74	2	1	3774	3847	15148828	15148900	1.110000e-22	119.0
47	TraesCS2A01G219300	chr6A	98.174	219	3	1	3378	3596	510214464	510214681	1.280000e-101	381.0
48	TraesCS2A01G219300	chr6A	96.121	232	5	3	3367	3596	517573637	517573408	5.960000e-100	375.0
49	TraesCS2A01G219300	chr6A	80.731	301	49	8	5763	6058	86356991	86357287	6.350000e-55	226.0
50	TraesCS2A01G219300	chr6A	95.122	123	5	1	2914	3036	349230960	349230839	6.440000e-45	193.0
51	TraesCS2A01G219300	chr6A	100.000	67	0	0	3774	3840	503814304	503814370	2.380000e-24	124.0
52	TraesCS2A01G219300	chr6A	77.160	162	30	6	320	474	484274738	484274899	3.120000e-13	87.9
53	TraesCS2A01G219300	chr1A	98.611	216	2	1	3381	3596	358543554	358543340	1.280000e-101	381.0
54	TraesCS2A01G219300	chr1A	100.000	181	0	0	3594	3774	82525881	82526061	1.010000e-87	335.0
55	TraesCS2A01G219300	chr1A	90.446	157	14	1	628	784	246130882	246130727	8.270000e-49	206.0
56	TraesCS2A01G219300	chr1A	91.241	137	11	1	2915	3051	266770496	266770361	1.080000e-42	185.0
57	TraesCS2A01G219300	chr4B	97.706	218	4	1	3379	3596	567354286	567354070	2.140000e-99	374.0
58	TraesCS2A01G219300	chr4B	89.937	159	14	2	628	785	381377600	381377443	2.970000e-48	204.0
59	TraesCS2A01G219300	chr4B	89.873	158	15	1	628	785	814263	814107	1.070000e-47	202.0
60	TraesCS2A01G219300	chr4B	87.059	170	21	1	628	797	261894594	261894426	2.320000e-44	191.0
61	TraesCS2A01G219300	chr7B	96.087	230	5	4	3369	3596	608379624	608379397	7.700000e-99	372.0
62	TraesCS2A01G219300	chr7B	90.741	162	13	2	626	786	218525790	218525950	1.370000e-51	215.0
63	TraesCS2A01G219300	chr7B	91.195	159	12	2	628	785	746714378	746714535	1.370000e-51	215.0
64	TraesCS2A01G219300	chr7B	91.139	158	13	1	628	785	463037435	463037591	4.940000e-51	213.0
65	TraesCS2A01G219300	chr7B	91.139	158	13	1	628	785	652145300	652145144	4.940000e-51	213.0
66	TraesCS2A01G219300	chr7B	93.827	81	2	3	3774	3852	368160508	368160429	1.110000e-22	119.0
67	TraesCS2A01G219300	chr6B	100.000	180	0	0	3596	3775	281231168	281231347	3.640000e-87	333.0
68	TraesCS2A01G219300	chr6B	90.062	161	14	2	626	785	556794414	556794573	2.300000e-49	207.0
69	TraesCS2A01G219300	chr6B	97.753	89	2	0	6204	6292	314788980	314789068	3.040000e-33	154.0
70	TraesCS2A01G219300	chr3D	100.000	180	0	0	3595	3774	153512222	153512401	3.640000e-87	333.0
71	TraesCS2A01G219300	chr3D	97.436	117	3	0	2915	3031	337959625	337959509	3.850000e-47	200.0
72	TraesCS2A01G219300	chr3D	89.375	160	14	3	628	785	21444242	21444400	1.380000e-46	198.0
73	TraesCS2A01G219300	chr3D	96.639	119	4	0	2914	3032	607000537	607000655	1.380000e-46	198.0
74	TraesCS2A01G219300	chr3D	80.435	230	36	3	36	260	351359397	351359622	3.900000e-37	167.0
75	TraesCS2A01G219300	chr3D	96.703	91	3	0	6202	6292	317198144	317198234	1.090000e-32	152.0
76	TraesCS2A01G219300	chr5D	85.135	222	24	5	39	255	486559137	486559354	1.060000e-52	219.0
77	TraesCS2A01G219300	chr5D	89.937	159	14	2	628	785	52654198	52654355	2.970000e-48	204.0
78	TraesCS2A01G219300	chr5D	97.436	117	3	0	2915	3031	498400300	498400416	3.850000e-47	200.0
79	TraesCS2A01G219300	chr5D	87.425	167	17	3	628	794	15956969	15956807	8.330000e-44	189.0
80	TraesCS2A01G219300	chr5D	93.651	126	8	0	2911	3036	30459068	30459193	8.330000e-44	189.0
81	TraesCS2A01G219300	chr5D	81.197	234	36	4	39	267	41434532	41434302	1.390000e-41	182.0
82	TraesCS2A01G219300	chr5D	94.792	96	5	0	6197	6292	232835936	232836031	3.930000e-32	150.0
83	TraesCS2A01G219300	chr7D	84.141	227	28	3	38	259	171643852	171644075	4.940000e-51	213.0
84	TraesCS2A01G219300	chr7D	89.937	159	14	2	628	785	548022543	548022386	2.970000e-48	204.0
85	TraesCS2A01G219300	chr7D	96.667	120	4	0	2914	3033	241094240	241094121	3.850000e-47	200.0
86	TraesCS2A01G219300	chr7D	88.415	164	15	4	628	790	46324795	46324635	1.790000e-45	195.0
87	TraesCS2A01G219300	chr7D	87.425	167	18	3	631	797	613016404	613016241	8.330000e-44	189.0
88	TraesCS2A01G219300	chr7D	78.425	292	56	6	5772	6058	40691815	40692104	3.870000e-42	183.0
89	TraesCS2A01G219300	chr7D	95.745	94	3	1	6199	6292	133333228	133333136	3.930000e-32	150.0
90	TraesCS2A01G219300	chr7D	96.053	76	2	1	3774	3849	583596821	583596895	8.570000e-24	122.0
91	TraesCS2A01G219300	chr4D	84.141	227	29	3	39	260	301153574	301153798	4.940000e-51	213.0
92	TraesCS2A01G219300	chr4D	94.444	126	5	2	2908	3032	367722353	367722229	6.440000e-45	193.0
93	TraesCS2A01G219300	chr4D	95.082	122	5	1	2914	3034	500825035	500825156	2.320000e-44	191.0
94	TraesCS2A01G219300	chr4D	94.872	117	6	0	2915	3031	15768043	15768159	3.870000e-42	183.0
95	TraesCS2A01G219300	chr4D	88.356	146	14	2	37	182	233074779	233074637	8.390000e-39	172.0
96	TraesCS2A01G219300	chr4D	81.951	205	31	3	65	264	295857384	295857587	1.080000e-37	169.0
97	TraesCS2A01G219300	chr4D	87.586	145	16	2	39	183	432593016	432593158	3.900000e-37	167.0
98	TraesCS2A01G219300	chr4D	94.828	58	3	0	198	255	474651226	474651169	2.420000e-14	91.6
99	TraesCS2A01G219300	chr1B	90.000	160	15	1	626	785	669312961	669312803	8.270000e-49	206.0
100	TraesCS2A01G219300	chr1B	90.000	160	13	3	628	785	458384185	458384343	2.970000e-48	204.0
101	TraesCS2A01G219300	chr1B	89.937	159	14	2	628	785	668053257	668053100	2.970000e-48	204.0
102	TraesCS2A01G219300	chr1B	89.873	158	15	1	628	785	363450545	363450389	1.070000e-47	202.0
103	TraesCS2A01G219300	chr1B	81.364	220	32	4	41	255	412372450	412372235	3.020000e-38	171.0
104	TraesCS2A01G219300	chr1B	96.739	92	3	0	6201	6292	144933642	144933551	3.040000e-33	154.0
105	TraesCS2A01G219300	chr6D	96.721	122	4	0	2914	3035	348647455	348647334	2.970000e-48	204.0
106	TraesCS2A01G219300	chr6D	96.610	118	4	0	2915	3032	464607407	464607290	4.980000e-46	196.0
107	TraesCS2A01G219300	chr6D	95.833	120	5	0	2915	3034	400082968	400083087	1.790000e-45	195.0
108	TraesCS2A01G219300	chr6D	95.763	118	5	0	2915	3032	9063574	9063691	2.320000e-44	191.0
109	TraesCS2A01G219300	chr6D	87.349	166	18	3	626	790	60027968	60027805	2.990000e-43	187.0
110	TraesCS2A01G219300	chr6D	87.975	158	17	2	628	785	426371872	426372027	1.080000e-42	185.0
111	TraesCS2A01G219300	chr6D	87.500	160	18	2	626	785	318368741	318368898	3.870000e-42	183.0
112	TraesCS2A01G219300	chr6D	82.143	224	31	5	39	256	444606174	444606394	3.870000e-42	183.0
113	TraesCS2A01G219300	chr6D	94.118	119	7	0	2915	3033	7397465	7397347	1.390000e-41	182.0
114	TraesCS2A01G219300	chr6D	94.068	118	7	0	2914	3031	450559485	450559602	5.010000e-41	180.0
115	TraesCS2A01G219300	chr6D	94.068	118	6	1	2915	3032	470660635	470660519	1.800000e-40	178.0
116	TraesCS2A01G219300	chr6D	84.409	186	20	4	37	217	122687925	122687744	2.330000e-39	174.0
117	TraesCS2A01G219300	chr6D	91.339	127	10	1	2913	3038	304087970	304087844	8.390000e-39	172.0
118	TraesCS2A01G219300	chr6D	87.586	145	15	1	39	183	326973294	326973435	1.400000e-36	165.0
119	TraesCS2A01G219300	chr6D	81.592	201	31	3	64	259	126364781	126364582	1.820000e-35	161.0
120	TraesCS2A01G219300	chr6D	86.897	145	16	2	39	183	372830767	372830908	6.530000e-35	159.0
121	TraesCS2A01G219300	chr6D	86.014	143	16	1	41	183	461059970	461060108	3.930000e-32	150.0
122	TraesCS2A01G219300	chr5A	95.902	122	5	0	2914	3035	505594260	505594139	1.380000e-46	198.0
123	TraesCS2A01G219300	chr5A	81.624	234	34	4	39	267	29763974	29763745	1.080000e-42	185.0
124	TraesCS2A01G219300	chrUn	89.241	158	16	1	628	785	311940219	311940375	4.980000e-46	196.0
125	TraesCS2A01G219300	chrUn	90.000	150	14	1	636	785	17264618	17264470	6.440000e-45	193.0
126	TraesCS2A01G219300	chrUn	88.608	158	17	1	628	785	200950355	200950511	2.320000e-44	191.0
127	TraesCS2A01G219300	chrUn	88.125	160	16	3	628	786	29208114	29208271	2.990000e-43	187.0
128	TraesCS2A01G219300	chrUn	87.654	162	19	1	628	789	37160788	37160948	2.990000e-43	187.0
129	TraesCS2A01G219300	chrUn	87.975	158	17	2	628	785	112557274	112557429	1.080000e-42	185.0
130	TraesCS2A01G219300	chrUn	93.333	120	8	0	2914	3033	87827392	87827511	1.800000e-40	178.0
131	TraesCS2A01G219300	chrUn	85.882	170	20	3	628	797	280933079	280932914	1.800000e-40	178.0
132	TraesCS2A01G219300	chrUn	93.333	120	8	0	2914	3033	309972437	309972556	1.800000e-40	178.0
133	TraesCS2A01G219300	chrUn	87.500	152	17	2	626	777	87772043	87771894	2.330000e-39	174.0
134	TraesCS2A01G219300	chrUn	93.220	118	8	0	2915	3032	88642465	88642582	2.330000e-39	174.0
135	TraesCS2A01G219300	chrUn	93.220	118	8	0	2914	3031	97740066	97740183	2.330000e-39	174.0
136	TraesCS2A01G219300	chrUn	93.220	118	8	0	2915	3032	283732556	283732673	2.330000e-39	174.0
137	TraesCS2A01G219300	chrUn	93.220	118	8	0	2915	3032	323577960	323578077	2.330000e-39	174.0
138	TraesCS2A01G219300	chrUn	86.250	160	19	3	628	785	88533453	88533295	3.020000e-38	171.0
139	TraesCS2A01G219300	chrUn	92.373	118	9	0	2915	3032	45828287	45828170	1.080000e-37	169.0
140	TraesCS2A01G219300	chrUn	91.736	121	10	0	2911	3031	100620759	100620879	1.080000e-37	169.0
141	TraesCS2A01G219300	chrUn	91.057	123	11	0	2914	3036	33028294	33028172	3.900000e-37	167.0
142	TraesCS2A01G219300	chrUn	86.301	146	17	3	38	183	392944192	392944334	8.450000e-34	156.0
143	TraesCS2A01G219300	chrUn	95.699	93	4	0	6200	6292	252182055	252182147	3.930000e-32	150.0
144	TraesCS2A01G219300	chrUn	95.699	93	4	0	6200	6292	304197100	304197192	3.930000e-32	150.0
145	TraesCS2A01G219300	chrUn	81.283	187	26	3	39	220	245485766	245485584	6.580000e-30	143.0
146	TraesCS2A01G219300	chrUn	81.283	187	26	3	39	220	478377479	478377297	6.580000e-30	143.0
147	TraesCS2A01G219300	chrUn	86.869	99	13	0	85	183	13891410	13891508	1.850000e-20	111.0
148	TraesCS2A01G219300	chrUn	80.272	147	25	1	39	185	70986413	70986555	2.400000e-19	108.0
149	TraesCS2A01G219300	chrUn	80.851	141	22	4	44	183	329032871	329033007	8.630000e-19	106.0
150	TraesCS2A01G219300	chr1D	89.241	158	16	1	628	785	326788106	326788262	4.980000e-46	196.0
151	TraesCS2A01G219300	chr1D	88.750	160	16	2	626	785	461040373	461040530	1.790000e-45	195.0
152	TraesCS2A01G219300	chr1D	94.872	117	6	0	2915	3031	453708273	453708157	3.870000e-42	183.0
153	TraesCS2A01G219300	chr1D	85.965	171	21	3	631	801	456819324	456819157	5.010000e-41	180.0
154	TraesCS2A01G219300	chr1D	92.683	123	9	0	2914	3036	471126606	471126484	1.800000e-40	178.0
155	TraesCS2A01G219300	chr1D	92.063	126	9	1	2914	3038	442675524	442675649	6.480000e-40	176.0
156	TraesCS2A01G219300	chr1D	87.755	147	16	1	37	183	355753814	355753958	3.020000e-38	171.0
157	TraesCS2A01G219300	chr1D	90.226	133	10	2	51	183	465776323	465776452	3.020000e-38	171.0
158	TraesCS2A01G219300	chr1D	87.586	145	15	2	39	183	31678960	31679101	1.400000e-36	165.0
159	TraesCS2A01G219300	chr1D	87.586	145	14	2	39	183	238030489	238030349	1.400000e-36	165.0
160	TraesCS2A01G219300	chr1D	86.897	145	18	1	39	183	115552140	115552283	1.820000e-35	161.0
161	TraesCS2A01G219300	chr1D	86.239	109	13	2	41	149	374144230	374144336	3.990000e-22	117.0
162	TraesCS2A01G219300	chr1D	84.545	110	14	1	39	148	480244607	480244713	8.630000e-19	106.0
163	TraesCS2A01G219300	chr1D	88.571	70	8	0	191	260	324356263	324356194	1.120000e-12	86.1

These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

	query	scaffold	start	end	length	rev.comp	avg.bitscore	max.bitscore	avg.percent.identical	query.start	query.end	num_hsp	groupid	homo_length
0	TraesCS2A01G219300	chr2A	206441239	206447530	6291	True	11620	11620	100.000000	1	6292	1	chr2A.!!$R1	6291
1	TraesCS2A01G219300	chr2B	248692137	248698271	6134	True	1451	2948	92.701000	1	5558	5	chr2B.!!$R4	5557
2	TraesCS2A01G219300	chr2B	456621880	456622394	514	True	737	737	92.621000	5556	6066	1	chr2B.!!$R2	510
3	TraesCS2A01G219300	chr2B	20082874	20083375	501	True	715	715	92.445000	5557	6056	1	chr2B.!!$R1	499
4	TraesCS2A01G219300	chr2D	190993159	191000500	7341	False	1270	2815	95.386400	911	5506	5	chr2D.!!$F4	4595
5	TraesCS2A01G219300	chr7A	63316271	63316777	506	True	822	822	96.055000	5555	6058	1	chr7A.!!$R1	503
6	TraesCS2A01G219300	chr7A	9208933	9210710	1777	True	209	379	98.596333	3382	3844	3	chr7A.!!$R2	462
7	TraesCS2A01G219300	chr5B	273144216	273144718	502	True	675	675	90.945000	5555	6058	1	chr5B.!!$R1	503

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)

Position	MSA Position	Penalty	Sequence	TM	GC	Self any TH	Self end TH	Hairpin	End Stability	Orientation
697	791	0.102481	GTCTTTCGGAGGCGCTCATA	59.898	55.0	7.64	0.0	31.08	2.15	F
847	941	0.330267	ATTAAACCACCGGGGGACAG	59.670	55.0	34.83	1.8	42.91	3.51	F
2065	2168	0.548197	TTGGGTTCGGGGTATCTGGT	60.548	55.0	0.00	0.0	0.00	4.00	F
2932	7697	0.032813	ATACTCCCTCCGTCCGGAAA	60.033	55.0	5.23	0.0	44.66	3.13	F
2936	7701	0.032813	TCCCTCCGTCCGGAAATACT	60.033	55.0	5.23	0.0	44.66	2.12	F
3029	7794	0.032813	TATTTCCGGACGGAGGGAGT	60.033	55.0	13.64	0.0	46.06	3.85	F
3030	7795	0.032813	ATTTCCGGACGGAGGGAGTA	60.033	55.0	13.64	0.0	46.06	2.59	F
3657	8424	0.036164	CCATGAGGTCACGGGTTCAA	59.964	55.0	0.00	0.0	0.00	2.69	F

Position	MSA Position	Penalty	Sequence	TM	GC	Self any TH	Self end TH	Hairpin	End Stability	Orientation
2256	3600	0.528684	GTCTCATGAGCCGCACTACC	60.529	60.0	18.36	0.00	0.00	3.18	R
2491	3835	0.602905	AAGTTCTCCGCCAAGTTCCG	60.603	55.0	0.00	0.00	0.00	4.30	R
2917	7682	0.032813	AGTATTTCCGGACGGAGGGA	60.033	55.0	13.64	4.95	46.06	4.20	R
4613	10698	0.249120	TGAAATGATCCAGGCGACGT	59.751	50.0	0.00	0.00	0.00	4.34	R
4754	10839	1.415672	ATATGGTGCCACCGGGTAGG	61.416	60.0	9.78	5.86	42.58	3.18	R
5036	11121	1.308047	TGCATACCACAATGGCGATC	58.692	50.0	0.00	0.00	42.67	3.69	R
5126	11211	0.897863	TCCACCCCAATCGCCTTTTG	60.898	55.0	0.00	0.00	0.00	2.44	R
5465	11553	0.179032	TTTGATGTCCCGTGCACTGT	60.179	50.0	16.19	0.00	0.00	3.55	R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)

Position	MSA Position	Penalty	Sequence	TM	GC	Self any TH	Self end TH	Hairpin	End Stability
62	63	7.883391	TGTTGGGAAACATAGTAGAAAACAA	57.117	32.000	0.00	0.00	0.00	2.83
64	65	8.750298	TGTTGGGAAACATAGTAGAAAACAAAA	58.250	29.630	0.00	0.00	0.00	2.44
105	106	6.947733	ACAAACACCCAAGATCAATATGAAGA	59.052	34.615	0.00	0.00	0.00	2.87
114	115	7.961283	CCAAGATCAATATGAAGATGCATAACG	59.039	37.037	0.00	0.00	34.67	3.18
119	120	7.220740	TCAATATGAAGATGCATAACGGGTTA	58.779	34.615	0.00	0.00	34.67	2.85
120	121	7.717436	TCAATATGAAGATGCATAACGGGTTAA	59.283	33.333	0.00	0.00	34.67	2.01
129	130	3.244579	GCATAACGGGTTAAGATCACGAC	59.755	47.826	0.00	0.00	35.55	4.34
131	132	1.259609	ACGGGTTAAGATCACGACCA	58.740	50.000	11.84	0.00	35.55	4.02
164	165	4.560128	CGAGTTGAAGAGGAAGATGAACA	58.440	43.478	0.00	0.00	0.00	3.18
166	167	6.333416	CGAGTTGAAGAGGAAGATGAACATA	58.667	40.000	0.00	0.00	0.00	2.29
182	183	5.993891	TGAACATATCGGTGTAGATCGTAC	58.006	41.667	0.00	0.00	32.39	3.67
183	184	5.528320	TGAACATATCGGTGTAGATCGTACA	59.472	40.000	0.00	2.15	32.39	2.90
185	186	6.179504	ACATATCGGTGTAGATCGTACATC	57.820	41.667	7.86	6.82	32.39	3.06
186	187	5.123502	ACATATCGGTGTAGATCGTACATCC	59.876	44.000	7.86	9.35	32.39	3.51
187	188	2.224606	TCGGTGTAGATCGTACATCCC	58.775	52.381	7.86	5.60	0.00	3.85
189	190	1.335689	GGTGTAGATCGTACATCCCGC	60.336	57.143	7.86	0.00	0.00	6.13
190	191	0.589708	TGTAGATCGTACATCCCGCG	59.410	55.000	0.00	0.00	0.00	6.46
221	250	2.541178	CGAATAGTCCCTCGAACCGAAG	60.541	54.545	0.00	0.00	37.23	3.79
236	265	1.803289	GAAGACCGAAAGCATGGCC	59.197	57.895	0.00	0.00	0.00	5.36
237	266	1.657751	GAAGACCGAAAGCATGGCCC	61.658	60.000	0.00	0.00	0.00	5.80
280	309	3.165318	CATTTGCGTCGTTGCGGC	61.165	61.111	0.00	0.00	37.81	6.53
340	369	2.028130	CTCTCGCCTCAGGTGACTAAT	58.972	52.381	1.57	0.00	40.21	1.73
341	370	2.025155	TCTCGCCTCAGGTGACTAATC	58.975	52.381	1.57	0.00	40.21	1.75
347	376	3.215151	CCTCAGGTGACTAATCTCGCTA	58.785	50.000	0.00	0.00	40.21	4.26
353	382	6.096987	TCAGGTGACTAATCTCGCTAGAAAAT	59.903	38.462	0.00	0.00	40.21	1.82
360	389	3.953712	TCTCGCTAGAAAATGACACCA	57.046	42.857	0.00	0.00	0.00	4.17
361	390	3.849911	TCTCGCTAGAAAATGACACCAG	58.150	45.455	0.00	0.00	0.00	4.00
396	425	1.226916	CGCCAAAGTGCAAGCAACA	60.227	52.632	0.00	0.00	0.00	3.33
400	429	1.269206	CCAAAGTGCAAGCAACACGAT	60.269	47.619	0.00	0.00	42.94	3.73
424	453	2.853077	AGGTTAATGGAGGAAAGAGGGG	59.147	50.000	0.00	0.00	0.00	4.79
434	463	2.821679	GAAAGAGGGGTGGGAAGCCG	62.822	65.000	0.00	0.00	0.00	5.52
445	474	1.078708	GGAAGCCGAAATCGTCCCA	60.079	57.895	1.79	0.00	37.74	4.37
471	500	2.124903	GGCATATATACCGGAATCGCG	58.875	52.381	9.46	0.00	34.56	5.87
472	501	2.124903	GCATATATACCGGAATCGCGG	58.875	52.381	9.46	8.29	34.56	6.46
473	502	2.223641	GCATATATACCGGAATCGCGGA	60.224	50.000	9.46	0.00	34.56	5.54
483	512	0.798009	GAATCGCGGACGGTTTACGA	60.798	55.000	6.13	4.35	44.27	3.43
504	533	4.510571	GAGCCTCCCGTAAAGATTTTACA	58.489	43.478	11.07	0.00	0.00	2.41
505	534	4.514401	AGCCTCCCGTAAAGATTTTACAG	58.486	43.478	11.07	1.49	0.00	2.74
507	536	4.840271	CCTCCCGTAAAGATTTTACAGGT	58.160	43.478	11.64	0.00	0.00	4.00
514	543	0.988832	AGATTTTACAGGTCGGGCCA	59.011	50.000	4.39	0.00	40.61	5.36
532	561	3.376234	GGCCATTTTTACCGAACCTAGTC	59.624	47.826	0.00	0.00	0.00	2.59
533	562	3.063045	GCCATTTTTACCGAACCTAGTCG	59.937	47.826	0.00	0.00	40.77	4.18
550	579	0.668096	TCGGGTCGGATGTTTTGACG	60.668	55.000	0.00	0.00	33.45	4.35
551	580	0.947180	CGGGTCGGATGTTTTGACGT	60.947	55.000	0.00	0.00	33.45	4.34
552	581	0.794473	GGGTCGGATGTTTTGACGTC	59.206	55.000	9.11	9.11	33.45	4.34
554	583	1.607251	GGTCGGATGTTTTGACGTCCT	60.607	52.381	14.12	0.00	42.22	3.85
555	584	1.459592	GTCGGATGTTTTGACGTCCTG	59.540	52.381	14.12	0.41	42.22	3.86
556	585	1.069513	TCGGATGTTTTGACGTCCTGT	59.930	47.619	14.12	0.00	42.22	4.00
557	586	2.296752	TCGGATGTTTTGACGTCCTGTA	59.703	45.455	14.12	0.00	42.22	2.74
559	588	3.495377	CGGATGTTTTGACGTCCTGTAAA	59.505	43.478	14.12	3.77	42.22	2.01
561	590	5.209977	GGATGTTTTGACGTCCTGTAAAAC	58.790	41.667	24.22	24.22	41.41	2.43
563	592	3.063725	TGTTTTGACGTCCTGTAAAACCG	59.936	43.478	26.24	0.00	40.47	4.44
564	593	2.600470	TTGACGTCCTGTAAAACCGT	57.400	45.000	14.12	0.00	0.00	4.83
566	595	3.724508	TGACGTCCTGTAAAACCGTTA	57.275	42.857	14.12	0.00	0.00	3.18
567	596	3.641648	TGACGTCCTGTAAAACCGTTAG	58.358	45.455	14.12	0.00	0.00	2.34
582	613	2.413634	CCGTTAGAAAATGCGACCCAAC	60.414	50.000	0.00	0.00	0.00	3.77
583	614	2.224549	CGTTAGAAAATGCGACCCAACA	59.775	45.455	0.00	0.00	0.00	3.33
585	616	4.226761	GTTAGAAAATGCGACCCAACAAG	58.773	43.478	0.00	0.00	0.00	3.16
601	632	5.806406	CCCAACAAGGTTATACAGGATGTGT	60.806	44.000	0.00	0.00	43.70	3.72
602	633	7.572481	CCCAACAAGGTTATACAGGATGTGTC	61.572	46.154	0.00	0.00	43.70	3.67
611	705	0.608130	CAGGATGTGTCACGGAAGGA	59.392	55.000	0.00	0.00	0.00	3.36
622	716	3.093814	TCACGGAAGGAAGTACATAGCA	58.906	45.455	0.00	0.00	0.00	3.49
623	717	3.512329	TCACGGAAGGAAGTACATAGCAA	59.488	43.478	0.00	0.00	0.00	3.91
624	718	4.020928	TCACGGAAGGAAGTACATAGCAAA	60.021	41.667	0.00	0.00	0.00	3.68
625	719	4.693566	CACGGAAGGAAGTACATAGCAAAA	59.306	41.667	0.00	0.00	0.00	2.44
626	720	5.354234	CACGGAAGGAAGTACATAGCAAAAT	59.646	40.000	0.00	0.00	0.00	1.82
627	721	5.354234	ACGGAAGGAAGTACATAGCAAAATG	59.646	40.000	0.00	0.00	0.00	2.32
628	722	5.584649	CGGAAGGAAGTACATAGCAAAATGA	59.415	40.000	0.00	0.00	0.00	2.57
629	723	6.456988	CGGAAGGAAGTACATAGCAAAATGAC	60.457	42.308	0.00	0.00	0.00	3.06
630	724	6.422776	AAGGAAGTACATAGCAAAATGACG	57.577	37.500	0.00	0.00	0.00	4.35
631	725	5.730550	AGGAAGTACATAGCAAAATGACGA	58.269	37.500	0.00	0.00	0.00	4.20
632	726	5.812642	AGGAAGTACATAGCAAAATGACGAG	59.187	40.000	0.00	0.00	0.00	4.18
633	727	5.810587	GGAAGTACATAGCAAAATGACGAGA	59.189	40.000	0.00	0.00	0.00	4.04
634	728	6.480320	GGAAGTACATAGCAAAATGACGAGAT	59.520	38.462	0.00	0.00	0.00	2.75
635	729	6.834959	AGTACATAGCAAAATGACGAGATG	57.165	37.500	0.00	0.00	0.00	2.90
636	730	4.542662	ACATAGCAAAATGACGAGATGC	57.457	40.909	0.00	0.00	37.28	3.91
637	731	3.313526	ACATAGCAAAATGACGAGATGCC	59.686	43.478	0.00	0.00	37.73	4.40
638	732	2.119801	AGCAAAATGACGAGATGCCT	57.880	45.000	0.00	0.00	37.73	4.75
639	733	3.266510	AGCAAAATGACGAGATGCCTA	57.733	42.857	0.00	0.00	37.73	3.93
640	734	2.939103	AGCAAAATGACGAGATGCCTAC	59.061	45.455	0.00	0.00	37.73	3.18
641	735	2.285834	GCAAAATGACGAGATGCCTACG	60.286	50.000	0.00	0.00	0.00	3.51
642	736	2.225068	AAATGACGAGATGCCTACGG	57.775	50.000	0.00	0.00	0.00	4.02
652	746	2.793946	GCCTACGGCGACTTCGTA	59.206	61.111	16.62	0.00	39.62	3.43
653	747	1.137404	GCCTACGGCGACTTCGTAA	59.863	57.895	16.62	0.00	41.62	3.18
654	748	0.456653	GCCTACGGCGACTTCGTAAA	60.457	55.000	16.62	0.00	41.62	2.01
655	749	1.800286	GCCTACGGCGACTTCGTAAAT	60.800	52.381	16.62	0.00	41.62	1.40
656	750	2.533266	CCTACGGCGACTTCGTAAATT	58.467	47.619	16.62	0.00	41.62	1.82
657	751	3.694734	CCTACGGCGACTTCGTAAATTA	58.305	45.455	16.62	0.00	41.62	1.40
658	752	3.483558	CCTACGGCGACTTCGTAAATTAC	59.516	47.826	16.62	0.00	41.62	1.89
659	753	2.945278	ACGGCGACTTCGTAAATTACA	58.055	42.857	16.62	0.00	42.22	2.41
660	754	3.316283	ACGGCGACTTCGTAAATTACAA	58.684	40.909	16.62	0.00	42.22	2.41
661	755	3.365820	ACGGCGACTTCGTAAATTACAAG	59.634	43.478	16.62	8.38	42.22	3.16
662	756	3.609373	CGGCGACTTCGTAAATTACAAGA	59.391	43.478	0.00	1.06	42.22	3.02
663	757	4.266976	CGGCGACTTCGTAAATTACAAGAT	59.733	41.667	0.00	6.38	42.22	2.40
664	758	5.490213	GGCGACTTCGTAAATTACAAGATG	58.510	41.667	16.42	11.25	42.22	2.90
665	759	5.290158	GGCGACTTCGTAAATTACAAGATGA	59.710	40.000	16.42	0.00	42.22	2.92
666	760	6.018994	GGCGACTTCGTAAATTACAAGATGAT	60.019	38.462	16.42	1.64	42.22	2.45
667	761	7.168637	GGCGACTTCGTAAATTACAAGATGATA	59.831	37.037	16.42	0.00	42.22	2.15
668	762	8.700644	GCGACTTCGTAAATTACAAGATGATAT	58.299	33.333	16.42	0.00	42.22	1.63
669	763	9.995379	CGACTTCGTAAATTACAAGATGATATG	57.005	33.333	16.42	0.00	34.11	1.78
670	764	9.798885	GACTTCGTAAATTACAAGATGATATGC	57.201	33.333	16.42	0.00	0.00	3.14
671	765	8.774586	ACTTCGTAAATTACAAGATGATATGCC	58.225	33.333	16.42	0.00	0.00	4.40
672	766	7.346208	TCGTAAATTACAAGATGATATGCCG	57.654	36.000	3.91	0.00	0.00	5.69
673	767	6.367695	TCGTAAATTACAAGATGATATGCCGG	59.632	38.462	0.00	0.00	0.00	6.13
674	768	5.376854	AAATTACAAGATGATATGCCGGC	57.623	39.130	22.73	22.73	0.00	6.13
675	769	3.769739	TTACAAGATGATATGCCGGCT	57.230	42.857	29.70	15.76	0.00	5.52
676	770	2.175878	ACAAGATGATATGCCGGCTC	57.824	50.000	29.70	17.89	0.00	4.70
677	771	1.417517	ACAAGATGATATGCCGGCTCA	59.582	47.619	29.70	23.34	0.00	4.26
678	772	2.074576	CAAGATGATATGCCGGCTCAG	58.925	52.381	29.70	7.35	0.00	3.35
679	773	1.346062	AGATGATATGCCGGCTCAGT	58.654	50.000	29.70	13.44	0.00	3.41
680	774	1.274728	AGATGATATGCCGGCTCAGTC	59.725	52.381	29.70	19.55	0.00	3.51
681	775	1.274728	GATGATATGCCGGCTCAGTCT	59.725	52.381	29.70	8.26	0.00	3.24
682	776	1.123077	TGATATGCCGGCTCAGTCTT	58.877	50.000	29.70	5.10	0.00	3.01
683	777	1.486310	TGATATGCCGGCTCAGTCTTT	59.514	47.619	29.70	3.35	0.00	2.52
684	778	2.139118	GATATGCCGGCTCAGTCTTTC	58.861	52.381	29.70	9.22	0.00	2.62
685	779	0.179111	TATGCCGGCTCAGTCTTTCG	60.179	55.000	29.70	0.00	0.00	3.46
686	780	2.815647	GCCGGCTCAGTCTTTCGG	60.816	66.667	22.15	0.00	43.13	4.30
687	781	2.970639	CCGGCTCAGTCTTTCGGA	59.029	61.111	0.00	0.00	42.94	4.55
688	782	1.153745	CCGGCTCAGTCTTTCGGAG	60.154	63.158	0.00	0.00	42.94	4.63
689	783	1.153745	CGGCTCAGTCTTTCGGAGG	60.154	63.158	0.00	0.00	38.48	4.30
690	784	4.193653	GCTCAGTCTTTCGGAGGC	57.806	61.111	0.00	0.00	38.48	4.70
691	785	1.807573	GCTCAGTCTTTCGGAGGCG	60.808	63.158	0.00	0.00	38.48	5.52
692	786	1.807573	CTCAGTCTTTCGGAGGCGC	60.808	63.158	0.00	0.00	35.32	6.53
693	787	2.219325	CTCAGTCTTTCGGAGGCGCT	62.219	60.000	7.64	0.00	35.32	5.92
694	788	1.807573	CAGTCTTTCGGAGGCGCTC	60.808	63.158	7.64	2.45	34.31	5.03
695	789	2.261671	GTCTTTCGGAGGCGCTCA	59.738	61.111	7.64	0.00	31.08	4.26
696	790	1.153549	GTCTTTCGGAGGCGCTCAT	60.154	57.895	7.64	0.00	31.08	2.90
697	791	0.102481	GTCTTTCGGAGGCGCTCATA	59.898	55.000	7.64	0.00	31.08	2.15
698	792	0.385751	TCTTTCGGAGGCGCTCATAG	59.614	55.000	7.64	0.00	31.08	2.23
699	793	0.598680	CTTTCGGAGGCGCTCATAGG	60.599	60.000	7.64	0.00	31.08	2.57
700	794	2.028125	TTTCGGAGGCGCTCATAGGG	62.028	60.000	7.64	0.00	31.08	3.53
701	795	3.996124	CGGAGGCGCTCATAGGGG	61.996	72.222	7.64	0.00	31.08	4.79
702	796	2.844839	GGAGGCGCTCATAGGGGT	60.845	66.667	7.64	0.00	31.08	4.95
703	797	1.533273	GGAGGCGCTCATAGGGGTA	60.533	63.158	7.64	0.00	31.08	3.69
704	798	1.536943	GGAGGCGCTCATAGGGGTAG	61.537	65.000	7.64	0.00	31.08	3.18
705	799	1.534235	AGGCGCTCATAGGGGTAGG	60.534	63.158	7.64	0.00	0.00	3.18
706	800	2.584391	GGCGCTCATAGGGGTAGGG	61.584	68.421	7.64	0.00	0.00	3.53
707	801	1.837499	GCGCTCATAGGGGTAGGGT	60.837	63.158	0.00	0.00	0.00	4.34
708	802	2.050269	CGCTCATAGGGGTAGGGTG	58.950	63.158	0.00	0.00	0.00	4.61
709	803	0.759436	CGCTCATAGGGGTAGGGTGT	60.759	60.000	0.00	0.00	0.00	4.16
710	804	0.759346	GCTCATAGGGGTAGGGTGTG	59.241	60.000	0.00	0.00	0.00	3.82
711	805	0.759346	CTCATAGGGGTAGGGTGTGC	59.241	60.000	0.00	0.00	0.00	4.57
712	806	1.046472	TCATAGGGGTAGGGTGTGCG	61.046	60.000	0.00	0.00	0.00	5.34
713	807	1.002533	ATAGGGGTAGGGTGTGCGT	59.997	57.895	0.00	0.00	0.00	5.24
714	808	1.335132	ATAGGGGTAGGGTGTGCGTG	61.335	60.000	0.00	0.00	0.00	5.34
715	809	2.735151	TAGGGGTAGGGTGTGCGTGT	62.735	60.000	0.00	0.00	0.00	4.49
716	810	2.285024	GGGGTAGGGTGTGCGTGTA	61.285	63.158	0.00	0.00	0.00	2.90
717	811	1.619807	GGGGTAGGGTGTGCGTGTAT	61.620	60.000	0.00	0.00	0.00	2.29
718	812	0.461339	GGGTAGGGTGTGCGTGTATG	60.461	60.000	0.00	0.00	0.00	2.39
719	813	1.087771	GGTAGGGTGTGCGTGTATGC	61.088	60.000	0.00	0.00	0.00	3.14
720	814	0.390603	GTAGGGTGTGCGTGTATGCA	60.391	55.000	0.00	0.00	43.95	3.96
731	825	5.809719	TGCGTGTATGCATTCATAGAAAA	57.190	34.783	3.54	0.00	40.62	2.29
732	826	6.375945	TGCGTGTATGCATTCATAGAAAAT	57.624	33.333	3.54	0.00	40.62	1.82
733	827	6.200808	TGCGTGTATGCATTCATAGAAAATG	58.799	36.000	3.54	0.00	40.62	2.32
734	828	6.038050	TGCGTGTATGCATTCATAGAAAATGA	59.962	34.615	3.54	0.00	40.62	2.57
735	829	6.576313	GCGTGTATGCATTCATAGAAAATGAG	59.424	38.462	3.54	0.00	36.43	2.90
736	830	7.633621	CGTGTATGCATTCATAGAAAATGAGT	58.366	34.615	3.54	0.00	36.43	3.41
737	831	7.585210	CGTGTATGCATTCATAGAAAATGAGTG	59.415	37.037	3.54	6.23	38.35	3.51
738	832	8.400947	GTGTATGCATTCATAGAAAATGAGTGT	58.599	33.333	3.54	0.00	37.84	3.55
739	833	9.612066	TGTATGCATTCATAGAAAATGAGTGTA	57.388	29.630	3.54	7.70	37.84	2.90
743	837	9.612066	TGCATTCATAGAAAATGAGTGTATACA	57.388	29.630	0.08	0.08	37.84	2.29
744	838	9.869844	GCATTCATAGAAAATGAGTGTATACAC	57.130	33.333	25.51	25.51	39.27	2.90
757	851	5.969970	GTGTATACACGTGTATATGAGCG	57.030	43.478	37.57	6.21	43.11	5.03
758	852	5.446709	GTGTATACACGTGTATATGAGCGT	58.553	41.667	37.57	21.01	43.11	5.07
759	853	5.911280	GTGTATACACGTGTATATGAGCGTT	59.089	40.000	37.57	20.40	43.11	4.84
760	854	6.415867	GTGTATACACGTGTATATGAGCGTTT	59.584	38.462	37.57	19.79	43.11	3.60
761	855	7.587392	GTGTATACACGTGTATATGAGCGTTTA	59.413	37.037	37.57	19.75	43.11	2.01
762	856	8.291740	TGTATACACGTGTATATGAGCGTTTAT	58.708	33.333	37.57	20.03	43.11	1.40
763	857	5.883328	ACACGTGTATATGAGCGTTTATG	57.117	39.130	21.98	0.00	35.25	1.90
764	858	5.345702	ACACGTGTATATGAGCGTTTATGT	58.654	37.500	21.98	0.00	35.25	2.29
765	859	5.457799	ACACGTGTATATGAGCGTTTATGTC	59.542	40.000	21.98	0.00	35.25	3.06
766	860	5.685954	CACGTGTATATGAGCGTTTATGTCT	59.314	40.000	7.58	0.00	35.25	3.41
767	861	6.854381	CACGTGTATATGAGCGTTTATGTCTA	59.146	38.462	7.58	0.00	35.25	2.59
768	862	7.537649	CACGTGTATATGAGCGTTTATGTCTAT	59.462	37.037	7.58	0.00	35.25	1.98
769	863	8.724229	ACGTGTATATGAGCGTTTATGTCTATA	58.276	33.333	0.00	0.00	33.54	1.31
770	864	8.996933	CGTGTATATGAGCGTTTATGTCTATAC	58.003	37.037	0.00	0.00	0.00	1.47
775	869	9.794685	ATATGAGCGTTTATGTCTATACTGATG	57.205	33.333	0.00	0.00	0.00	3.07
776	870	7.039313	TGAGCGTTTATGTCTATACTGATGT	57.961	36.000	0.00	0.00	0.00	3.06
777	871	7.489160	TGAGCGTTTATGTCTATACTGATGTT	58.511	34.615	0.00	0.00	0.00	2.71
778	872	8.626526	TGAGCGTTTATGTCTATACTGATGTTA	58.373	33.333	0.00	0.00	0.00	2.41
779	873	9.459640	GAGCGTTTATGTCTATACTGATGTTAA	57.540	33.333	0.00	0.00	0.00	2.01
780	874	9.811995	AGCGTTTATGTCTATACTGATGTTAAA	57.188	29.630	0.00	0.00	0.00	1.52
803	897	0.531311	ACGAAAGGAAGAACGCGGTT	60.531	50.000	12.47	1.69	0.00	4.44
847	941	0.330267	ATTAAACCACCGGGGGACAG	59.670	55.000	34.83	1.80	42.91	3.51
869	963	8.246430	ACAGATAGGAAAATGGTATCGACTTA	57.754	34.615	0.00	0.00	0.00	2.24
891	985	3.769300	AGTTTTGCCTCCTCACTGTTTTT	59.231	39.130	0.00	0.00	0.00	1.94
933	1027	2.126071	CACCGATCGCCACTTCGT	60.126	61.111	10.32	0.00	33.60	3.85
990	1084	4.078516	CCCCTCGTCCCAACCGAC	62.079	72.222	0.00	0.00	0.00	4.79
1314	1410	2.260434	GACACGCCGCTCCACTTA	59.740	61.111	0.00	0.00	0.00	2.24
1371	1467	1.764054	CATCGCTTCCTCCCCCTCT	60.764	63.158	0.00	0.00	0.00	3.69
1372	1468	1.764054	ATCGCTTCCTCCCCCTCTG	60.764	63.158	0.00	0.00	0.00	3.35
1595	1691	7.675270	TTCTTATCAAGTCGTATAAGAACGC	57.325	36.000	11.54	0.00	44.14	4.84
1622	1718	1.079503	GACGAAGATGAGGTGCCAAC	58.920	55.000	0.00	0.00	0.00	3.77
1722	1818	3.370978	CGAGACATCGCCTTGTGTATTTT	59.629	43.478	0.00	0.00	42.97	1.82
1767	1863	1.665161	GCAACTCTGCAAGATGTGTGC	60.665	52.381	3.37	0.00	45.62	4.57
1800	1896	7.873719	TTTTCTTCACCTGTAATTGACTGAA	57.126	32.000	0.00	0.00	0.00	3.02
1881	1978	4.262765	CGGTAGGGTACTCTTTCTTGGTTT	60.263	45.833	0.00	0.00	0.00	3.27
1931	2028	7.867403	TCAGGTGATTCTGTTTTGAATTTTAGC	59.133	33.333	0.00	0.00	36.86	3.09
1935	2032	9.176181	GTGATTCTGTTTTGAATTTTAGCGTAA	57.824	29.630	0.00	0.00	36.86	3.18
1967	2064	5.764686	TCTGCTCTGTTTGATTCTGCTTTAA	59.235	36.000	0.00	0.00	0.00	1.52
2005	2105	5.517322	AGAAGTTATAGGCTAGGTTCACG	57.483	43.478	0.00	0.00	0.00	4.35
2065	2168	0.548197	TTGGGTTCGGGGTATCTGGT	60.548	55.000	0.00	0.00	0.00	4.00
2074	2177	1.166531	GGGTATCTGGTTCGCATGGC	61.167	60.000	0.00	0.00	0.00	4.40
2093	2196	1.803334	CGCAAGCTGTAAGGGTAACA	58.197	50.000	0.00	0.00	39.74	2.41
2094	2197	2.356135	CGCAAGCTGTAAGGGTAACAT	58.644	47.619	0.00	0.00	39.74	2.71
2095	2198	2.095853	CGCAAGCTGTAAGGGTAACATG	59.904	50.000	0.00	0.00	39.74	3.21
2137	3481	4.393990	GGTATGTGTTGGTAGGCACTTTAC	59.606	45.833	0.00	0.00	41.75	2.01
2154	3498	5.064707	CACTTTACTGTTTGTGGCGCTATAT	59.935	40.000	7.64	0.00	0.00	0.86
2256	3600	7.565680	AGTTTGGGATAGTACTACTGAAATGG	58.434	38.462	4.31	0.00	0.00	3.16
2416	3760	3.738982	TGTAATTATGGGATCTGCGTGG	58.261	45.455	0.00	0.00	0.00	4.94
2463	3807	8.585145	ATCAAAGGATAGGATGGGGTTTTCCC	62.585	46.154	0.00	0.00	45.24	3.97
2491	3835	5.018809	AGGATCAGGATCAGAAGATAGAGC	58.981	45.833	11.12	0.00	39.54	4.09
2505	3849	1.945354	TAGAGCGGAACTTGGCGGAG	61.945	60.000	0.00	0.00	0.00	4.63
2529	3873	9.783256	GAGAACTTTACAAAACATGTAGTTGTT	57.217	29.630	24.76	16.21	45.00	2.83
2658	4002	4.458708	GCTGTGACTTCTGAACGATTTTC	58.541	43.478	0.00	0.00	0.00	2.29
2665	4009	9.267096	GTGACTTCTGAACGATTTTCATATTTC	57.733	33.333	0.00	0.00	0.00	2.17
2730	4074	2.587307	AGCCACCCCCTCTAATTTCATT	59.413	45.455	0.00	0.00	0.00	2.57
2814	4158	5.493809	TGGTAACTATACAGTTTTCCTGCC	58.506	41.667	0.00	0.00	42.51	4.85
2819	4163	6.969993	ACTATACAGTTTTCCTGCCAAAAA	57.030	33.333	0.00	0.00	45.68	1.94
2917	7682	9.924010	AGTTTGTAGTAGAAGATAGGACATACT	57.076	33.333	0.00	0.00	0.00	2.12
2919	7684	8.921353	TTGTAGTAGAAGATAGGACATACTCC	57.079	38.462	0.00	0.00	39.81	3.85
2920	7685	7.460071	TGTAGTAGAAGATAGGACATACTCCC	58.540	42.308	0.00	0.00	40.53	4.30
2921	7686	6.790177	AGTAGAAGATAGGACATACTCCCT	57.210	41.667	0.00	0.00	40.53	4.20
2922	7687	6.786122	AGTAGAAGATAGGACATACTCCCTC	58.214	44.000	0.00	0.00	40.53	4.30
2923	7688	5.005628	AGAAGATAGGACATACTCCCTCC	57.994	47.826	0.00	0.00	40.53	4.30
2924	7689	3.443145	AGATAGGACATACTCCCTCCG	57.557	52.381	0.00	0.00	40.53	4.63
2925	7690	2.717515	AGATAGGACATACTCCCTCCGT	59.282	50.000	0.00	0.00	40.53	4.69
2926	7691	2.653234	TAGGACATACTCCCTCCGTC	57.347	55.000	0.00	0.00	40.53	4.79
2927	7692	0.106116	AGGACATACTCCCTCCGTCC	60.106	60.000	0.00	0.00	45.34	4.79
2928	7693	1.453762	GGACATACTCCCTCCGTCCG	61.454	65.000	0.00	0.00	37.04	4.79
2929	7694	1.453762	GACATACTCCCTCCGTCCGG	61.454	65.000	0.00	0.00	0.00	5.14
2930	7695	1.152819	CATACTCCCTCCGTCCGGA	60.153	63.158	0.00	0.00	42.90	5.14
2931	7696	0.754217	CATACTCCCTCCGTCCGGAA	60.754	60.000	5.23	0.00	44.66	4.30
2932	7697	0.032813	ATACTCCCTCCGTCCGGAAA	60.033	55.000	5.23	0.00	44.66	3.13
2933	7698	0.032813	TACTCCCTCCGTCCGGAAAT	60.033	55.000	5.23	0.00	44.66	2.17
2934	7699	0.032813	ACTCCCTCCGTCCGGAAATA	60.033	55.000	5.23	0.00	44.66	1.40
2935	7700	0.388294	CTCCCTCCGTCCGGAAATAC	59.612	60.000	5.23	0.00	44.66	1.89
2936	7701	0.032813	TCCCTCCGTCCGGAAATACT	60.033	55.000	5.23	0.00	44.66	2.12
2937	7702	0.828677	CCCTCCGTCCGGAAATACTT	59.171	55.000	5.23	0.00	44.66	2.24
2938	7703	1.472728	CCCTCCGTCCGGAAATACTTG	60.473	57.143	5.23	0.00	44.66	3.16
2939	7704	1.206371	CCTCCGTCCGGAAATACTTGT	59.794	52.381	5.23	0.00	44.66	3.16
2940	7705	2.537401	CTCCGTCCGGAAATACTTGTC	58.463	52.381	5.23	0.00	44.66	3.18
2941	7706	1.135315	TCCGTCCGGAAATACTTGTCG	60.135	52.381	5.23	1.25	42.05	4.35
2942	7707	1.403249	CCGTCCGGAAATACTTGTCGT	60.403	52.381	5.23	0.00	37.50	4.34
2943	7708	1.652124	CGTCCGGAAATACTTGTCGTG	59.348	52.381	5.23	0.00	0.00	4.35
2944	7709	1.997606	GTCCGGAAATACTTGTCGTGG	59.002	52.381	5.23	0.00	0.00	4.94
2945	7710	1.894466	TCCGGAAATACTTGTCGTGGA	59.106	47.619	0.00	0.00	0.00	4.02
2946	7711	2.299582	TCCGGAAATACTTGTCGTGGAA	59.700	45.455	0.00	0.00	0.00	3.53
2947	7712	3.068560	CCGGAAATACTTGTCGTGGAAA	58.931	45.455	0.00	0.00	0.00	3.13
2948	7713	3.687698	CCGGAAATACTTGTCGTGGAAAT	59.312	43.478	0.00	0.00	0.00	2.17
2949	7714	4.436852	CCGGAAATACTTGTCGTGGAAATG	60.437	45.833	0.00	0.00	0.00	2.32
2950	7715	4.436852	CGGAAATACTTGTCGTGGAAATGG	60.437	45.833	0.00	0.00	0.00	3.16
2951	7716	4.698304	GGAAATACTTGTCGTGGAAATGGA	59.302	41.667	0.00	0.00	0.00	3.41
2952	7717	5.357032	GGAAATACTTGTCGTGGAAATGGAT	59.643	40.000	0.00	0.00	0.00	3.41
2953	7718	6.540914	GGAAATACTTGTCGTGGAAATGGATA	59.459	38.462	0.00	0.00	0.00	2.59
2954	7719	6.920569	AATACTTGTCGTGGAAATGGATAC	57.079	37.500	0.00	0.00	0.00	2.24
3003	7768	6.522625	ACATCTAGATACATCCATTCCTCG	57.477	41.667	4.54	0.00	0.00	4.63
3004	7769	5.420421	ACATCTAGATACATCCATTCCTCGG	59.580	44.000	4.54	0.00	0.00	4.63
3005	7770	5.256806	TCTAGATACATCCATTCCTCGGA	57.743	43.478	0.00	0.00	36.84	4.55
3006	7771	5.010933	TCTAGATACATCCATTCCTCGGAC	58.989	45.833	0.00	0.00	34.69	4.79
3007	7772	3.576861	AGATACATCCATTCCTCGGACA	58.423	45.455	0.00	0.00	34.69	4.02
3008	7773	3.967326	AGATACATCCATTCCTCGGACAA	59.033	43.478	0.00	0.00	34.69	3.18
3009	7774	2.698855	ACATCCATTCCTCGGACAAG	57.301	50.000	0.00	0.00	34.69	3.16
3010	7775	1.909302	ACATCCATTCCTCGGACAAGT	59.091	47.619	0.00	0.00	34.69	3.16
3011	7776	3.104512	ACATCCATTCCTCGGACAAGTA	58.895	45.455	0.00	0.00	34.69	2.24
3012	7777	3.711704	ACATCCATTCCTCGGACAAGTAT	59.288	43.478	0.00	0.00	34.69	2.12
3013	7778	4.164221	ACATCCATTCCTCGGACAAGTATT	59.836	41.667	0.00	0.00	34.69	1.89
3014	7779	4.837093	TCCATTCCTCGGACAAGTATTT	57.163	40.909	0.00	0.00	0.00	1.40
3015	7780	4.766375	TCCATTCCTCGGACAAGTATTTC	58.234	43.478	0.00	0.00	0.00	2.17
3016	7781	3.877508	CCATTCCTCGGACAAGTATTTCC	59.122	47.826	0.00	0.00	0.00	3.13
3022	7787	1.648504	GGACAAGTATTTCCGGACGG	58.351	55.000	1.83	3.96	0.00	4.79
3023	7788	1.205417	GGACAAGTATTTCCGGACGGA	59.795	52.381	1.83	9.76	43.52	4.69
3024	7789	2.537401	GACAAGTATTTCCGGACGGAG	58.463	52.381	13.64	3.15	46.06	4.63
3025	7790	1.206371	ACAAGTATTTCCGGACGGAGG	59.794	52.381	13.64	0.00	46.06	4.30
3026	7791	0.828677	AAGTATTTCCGGACGGAGGG	59.171	55.000	13.64	0.00	46.06	4.30
3027	7792	0.032813	AGTATTTCCGGACGGAGGGA	60.033	55.000	13.64	4.95	46.06	4.20
3028	7793	0.388294	GTATTTCCGGACGGAGGGAG	59.612	60.000	13.64	0.00	46.06	4.30
3029	7794	0.032813	TATTTCCGGACGGAGGGAGT	60.033	55.000	13.64	0.00	46.06	3.85
3030	7795	0.032813	ATTTCCGGACGGAGGGAGTA	60.033	55.000	13.64	0.00	46.06	2.59
3031	7796	0.967380	TTTCCGGACGGAGGGAGTAC	60.967	60.000	13.64	0.00	46.06	2.73
3040	7805	1.269102	CGGAGGGAGTACATGTAAGCG	60.269	57.143	7.25	0.00	0.00	4.68
3049	7814	5.149054	AGTACATGTAAGCGTACGTAGTC	57.851	43.478	17.90	6.44	43.93	2.59
3090	7855	9.965902	ATTATTTACCTCAGAACTCTGTTCATT	57.034	29.630	12.16	0.00	44.12	2.57
3154	7919	3.750371	TCGTCATTGTTCCTGATTGGTT	58.250	40.909	0.00	0.00	37.07	3.67
3206	7971	5.871539	ACTTTTGCTTTGTTTGCATCTTTG	58.128	33.333	0.00	0.00	40.34	2.77
3554	8321	5.687770	TGGTGTTGTTATGTGAATGTCTG	57.312	39.130	0.00	0.00	0.00	3.51
3558	8325	7.446931	TGGTGTTGTTATGTGAATGTCTGTAAT	59.553	33.333	0.00	0.00	0.00	1.89
3596	8363	4.081406	TGGTCAAAGTTGGATGAGATTGG	58.919	43.478	0.00	0.00	0.00	3.16
3597	8364	4.202556	TGGTCAAAGTTGGATGAGATTGGA	60.203	41.667	0.00	0.00	0.00	3.53
3598	8365	4.766891	GGTCAAAGTTGGATGAGATTGGAA	59.233	41.667	0.00	0.00	0.00	3.53
3599	8366	5.105997	GGTCAAAGTTGGATGAGATTGGAAG	60.106	44.000	0.00	0.00	0.00	3.46
3600	8367	5.012239	TCAAAGTTGGATGAGATTGGAAGG	58.988	41.667	0.00	0.00	0.00	3.46
3604	8371	2.130193	TGGATGAGATTGGAAGGGGAG	58.870	52.381	0.00	0.00	0.00	4.30
3605	8372	1.202867	GGATGAGATTGGAAGGGGAGC	60.203	57.143	0.00	0.00	0.00	4.70
3606	8373	0.849417	ATGAGATTGGAAGGGGAGCC	59.151	55.000	0.00	0.00	0.00	4.70
3607	8374	0.253347	TGAGATTGGAAGGGGAGCCT	60.253	55.000	0.00	0.00	0.00	4.58
3608	8375	0.922626	GAGATTGGAAGGGGAGCCTT	59.077	55.000	0.00	0.00	0.00	4.35
3609	8376	0.627986	AGATTGGAAGGGGAGCCTTG	59.372	55.000	0.00	0.00	0.00	3.61
3610	8377	0.396278	GATTGGAAGGGGAGCCTTGG	60.396	60.000	0.00	0.00	0.00	3.61
3611	8378	2.520657	ATTGGAAGGGGAGCCTTGGC	62.521	60.000	2.97	2.97	0.00	4.52
3612	8379	4.803908	GGAAGGGGAGCCTTGGCG	62.804	72.222	5.95	0.00	0.00	5.69
3621	8388	2.671619	GCCTTGGCGCAGTGGTAA	60.672	61.111	10.83	0.00	0.00	2.85
3622	8389	2.265182	GCCTTGGCGCAGTGGTAAA	61.265	57.895	10.83	0.00	0.00	2.01
3623	8390	1.875963	CCTTGGCGCAGTGGTAAAG	59.124	57.895	10.83	0.71	0.00	1.85
3624	8391	1.210155	CTTGGCGCAGTGGTAAAGC	59.790	57.895	10.83	0.00	0.00	3.51
3625	8392	1.228124	TTGGCGCAGTGGTAAAGCT	60.228	52.632	10.83	0.00	0.00	3.74
3626	8393	1.514678	TTGGCGCAGTGGTAAAGCTG	61.515	55.000	10.83	0.00	35.93	4.24
3632	8399	0.607489	CAGTGGTAAAGCTGCTGCCT	60.607	55.000	12.44	2.45	40.80	4.75
3633	8400	0.111253	AGTGGTAAAGCTGCTGCCTT	59.889	50.000	12.44	8.34	40.80	4.35
3635	8402	0.178992	TGGTAAAGCTGCTGCCTTGT	60.179	50.000	12.44	0.00	40.80	3.16
3637	8404	1.238439	GTAAAGCTGCTGCCTTGTGA	58.762	50.000	12.44	0.00	40.80	3.58
3638	8405	1.068954	GTAAAGCTGCTGCCTTGTGAC	60.069	52.381	12.44	0.00	40.80	3.67
3639	8406	1.458639	AAAGCTGCTGCCTTGTGACC	61.459	55.000	12.44	0.00	40.80	4.02
3640	8407	2.595463	GCTGCTGCCTTGTGACCA	60.595	61.111	3.85	0.00	0.00	4.02
3642	8409	1.880894	CTGCTGCCTTGTGACCATG	59.119	57.895	0.00	0.00	0.00	3.66
3643	8410	0.607217	CTGCTGCCTTGTGACCATGA	60.607	55.000	0.00	0.00	0.00	3.07
3644	8411	0.607217	TGCTGCCTTGTGACCATGAG	60.607	55.000	0.00	0.00	0.00	2.90
3645	8412	1.310933	GCTGCCTTGTGACCATGAGG	61.311	60.000	0.00	0.00	42.21	3.86
3655	8422	4.617875	CCATGAGGTCACGGGTTC	57.382	61.111	0.00	0.00	0.00	3.62
3656	8423	1.676968	CCATGAGGTCACGGGTTCA	59.323	57.895	0.00	0.00	0.00	3.18
3657	8424	0.036164	CCATGAGGTCACGGGTTCAA	59.964	55.000	0.00	0.00	0.00	2.69
3658	8425	1.442769	CATGAGGTCACGGGTTCAAG	58.557	55.000	0.00	0.00	0.00	3.02
3661	8428	0.320508	GAGGTCACGGGTTCAAGTCC	60.321	60.000	0.00	0.00	0.00	3.85
3662	8429	0.763223	AGGTCACGGGTTCAAGTCCT	60.763	55.000	0.00	0.00	0.00	3.85
3665	8432	0.761323	TCACGGGTTCAAGTCCTGGA	60.761	55.000	0.00	0.00	35.79	3.86
3666	8433	0.107831	CACGGGTTCAAGTCCTGGAA	59.892	55.000	0.00	0.00	35.79	3.53
3667	8434	0.841289	ACGGGTTCAAGTCCTGGAAA	59.159	50.000	0.00	0.00	35.79	3.13
3668	8435	1.235724	CGGGTTCAAGTCCTGGAAAC	58.764	55.000	0.00	0.00	0.00	2.78
3683	8450	4.431416	TGGAAACAGCCTCTTACAGAAA	57.569	40.909	0.00	0.00	35.01	2.52
3685	8452	4.761739	TGGAAACAGCCTCTTACAGAAATG	59.238	41.667	0.00	0.00	35.01	2.32
3686	8453	4.762251	GGAAACAGCCTCTTACAGAAATGT	59.238	41.667	0.00	0.00	0.00	2.71
3687	8454	5.938125	GGAAACAGCCTCTTACAGAAATGTA	59.062	40.000	0.00	0.00	0.00	2.29
3689	8456	5.091261	ACAGCCTCTTACAGAAATGTAGG	57.909	43.478	0.00	0.00	0.00	3.18
3690	8457	4.080863	ACAGCCTCTTACAGAAATGTAGGG	60.081	45.833	0.00	0.66	0.00	3.53
3691	8458	4.162320	CAGCCTCTTACAGAAATGTAGGGA	59.838	45.833	0.00	0.00	0.00	4.20
3692	8459	4.783227	AGCCTCTTACAGAAATGTAGGGAA	59.217	41.667	0.00	0.00	0.00	3.97
3693	8460	5.250774	AGCCTCTTACAGAAATGTAGGGAAA	59.749	40.000	0.00	0.00	0.00	3.13
3695	8462	6.116126	CCTCTTACAGAAATGTAGGGAAAGG	58.884	44.000	0.00	0.00	0.00	3.11
3697	8464	5.250774	TCTTACAGAAATGTAGGGAAAGGCT	59.749	40.000	0.00	0.00	0.00	4.58
3698	8465	3.690460	ACAGAAATGTAGGGAAAGGCTG	58.310	45.455	0.00	0.00	0.00	4.85
3699	8466	2.424956	CAGAAATGTAGGGAAAGGCTGC	59.575	50.000	0.00	0.00	0.00	5.25
3700	8467	1.401905	GAAATGTAGGGAAAGGCTGCG	59.598	52.381	0.00	0.00	0.00	5.18
3701	8468	0.328258	AATGTAGGGAAAGGCTGCGT	59.672	50.000	0.00	0.00	0.00	5.24
3702	8469	1.200519	ATGTAGGGAAAGGCTGCGTA	58.799	50.000	0.00	0.00	0.00	4.42
3703	8470	0.248289	TGTAGGGAAAGGCTGCGTAC	59.752	55.000	0.00	0.00	37.28	3.67
3706	8473	1.497161	AGGGAAAGGCTGCGTACTAT	58.503	50.000	0.00	0.00	0.00	2.12
3707	8474	2.674420	AGGGAAAGGCTGCGTACTATA	58.326	47.619	0.00	0.00	0.00	1.31
3708	8475	2.628657	AGGGAAAGGCTGCGTACTATAG	59.371	50.000	0.00	0.00	0.00	1.31
3709	8476	2.626743	GGGAAAGGCTGCGTACTATAGA	59.373	50.000	6.78	0.00	0.00	1.98
3711	8478	3.552478	GGAAAGGCTGCGTACTATAGACC	60.552	52.174	6.78	0.00	0.00	3.85
3713	8480	1.133575	AGGCTGCGTACTATAGACCCA	60.134	52.381	6.78	0.00	0.00	4.51
3715	8482	2.101917	GGCTGCGTACTATAGACCCAAA	59.898	50.000	6.78	0.00	0.00	3.28
3716	8483	3.381949	GCTGCGTACTATAGACCCAAAG	58.618	50.000	6.78	0.00	0.00	2.77
3717	8484	3.181478	GCTGCGTACTATAGACCCAAAGT	60.181	47.826	6.78	0.00	0.00	2.66
3719	8486	3.131577	TGCGTACTATAGACCCAAAGTGG	59.868	47.826	6.78	0.00	37.25	4.00
3720	8487	3.131755	GCGTACTATAGACCCAAAGTGGT	59.868	47.826	6.78	0.00	42.79	4.16
3725	8492	4.373771	GACCCAAAGTGGTCGGAC	57.626	61.111	0.00	0.00	44.98	4.79
3726	8493	1.302271	GACCCAAAGTGGTCGGACC	60.302	63.158	20.36	20.36	44.98	4.46
3728	8495	2.526046	CCCAAAGTGGTCGGACCCT	61.526	63.158	23.81	16.82	37.50	4.34
3730	8497	0.605589	CCAAAGTGGTCGGACCCTTC	60.606	60.000	23.81	13.97	37.50	3.46
3732	8499	1.775934	AAAGTGGTCGGACCCTTCCC	61.776	60.000	23.81	7.17	38.99	3.97
3733	8500	3.714001	GTGGTCGGACCCTTCCCC	61.714	72.222	23.81	0.00	38.99	4.81
3740	8507	4.735599	GACCCTTCCCCGGACCCT	62.736	72.222	0.73	0.00	0.00	4.34
3767	8534	2.203070	GGAGCTACATGCACCGGG	60.203	66.667	6.32	0.00	42.21	5.73
3768	8535	2.897350	GAGCTACATGCACCGGGC	60.897	66.667	6.32	7.25	45.94	6.13
3769	8536	3.391665	GAGCTACATGCACCGGGCT	62.392	63.158	6.32	0.81	45.94	5.19
3770	8537	3.204827	GCTACATGCACCGGGCTG	61.205	66.667	6.32	9.21	45.15	4.85
3772	8539	4.794648	TACATGCACCGGGCTGCC	62.795	66.667	11.05	11.05	45.15	4.85
3878	9962	8.592105	AAATTGGATTTTGTGTAGTTGACATG	57.408	30.769	0.00	0.00	41.14	3.21
4172	10256	5.198602	AGCTTGATGGTAAAGGAAGGAAT	57.801	39.130	0.00	0.00	0.00	3.01
4251	10335	1.208052	CCCCAGAGCTCGAAAGAATGA	59.792	52.381	8.37	0.00	41.32	2.57
4453	10537	5.026790	ACTGGTAATCTTCTTGAGCCTACT	58.973	41.667	0.00	0.00	0.00	2.57
4583	10668	3.246226	CACAGGTCATTATACTTCGCTGC	59.754	47.826	0.00	0.00	0.00	5.25
4754	10839	1.535462	ACGTTTGCAGCAGTATTCACC	59.465	47.619	0.00	0.00	0.00	4.02
5036	11121	1.153549	GAGCCCAGTTAGTGAGCGG	60.154	63.158	0.00	0.00	0.00	5.52
5126	11211	1.604278	GGCTTCCTGTTTATGCCGATC	59.396	52.381	0.00	0.00	33.96	3.69
5204	11289	5.753716	AGGAGTCGTCTTACAGTAGGTATT	58.246	41.667	0.00	0.00	0.00	1.89
5232	11317	4.987912	CCAATTTTGCGTGTTTAATCCTGT	59.012	37.500	0.00	0.00	0.00	4.00
5428	11516	8.169268	GTGACATAGTTCGAACTTTATTCAAGG	58.831	37.037	33.82	18.65	40.37	3.61
5446	11534	0.035056	GGGTCTCCAATGGTGTGAGG	60.035	60.000	0.00	0.00	0.00	3.86
5461	11549	3.125316	GTGTGAGGAAAGCAATTCTACCG	59.875	47.826	2.79	0.00	38.18	4.02
5462	11550	3.244422	TGTGAGGAAAGCAATTCTACCGT	60.244	43.478	2.79	0.00	38.18	4.83
5463	11551	3.125316	GTGAGGAAAGCAATTCTACCGTG	59.875	47.826	2.79	0.00	38.18	4.94
5464	11552	2.084546	AGGAAAGCAATTCTACCGTGC	58.915	47.619	2.79	0.00	38.18	5.34
5465	11553	1.810151	GGAAAGCAATTCTACCGTGCA	59.190	47.619	0.00	0.00	40.83	4.57
5466	11554	2.414161	GGAAAGCAATTCTACCGTGCAC	60.414	50.000	6.82	6.82	40.83	4.57
5467	11555	1.890876	AAGCAATTCTACCGTGCACA	58.109	45.000	18.64	0.00	40.83	4.57
5482	11570	1.301637	CACAGTGCACGGGACATCA	60.302	57.895	21.15	0.00	0.00	3.07
5488	11576	1.226379	GCACGGGACATCAAATGCG	60.226	57.895	0.00	0.00	0.00	4.73
5515	11603	1.549203	AACCATCCATTTGCTTCGCT	58.451	45.000	0.00	0.00	0.00	4.93
5529	11617	3.867493	TGCTTCGCTTTCAGATCTGTATG	59.133	43.478	21.92	15.32	0.00	2.39
5665	11754	2.886862	TCAGAAAACCGTTCGGTGTA	57.113	45.000	17.59	0.00	38.70	2.90
5853	11946	5.789710	TCTTCTGACGAAACGTTTTCTTT	57.210	34.783	15.89	0.00	41.37	2.52
5908	12001	3.253432	GGAACTCCAACTCTTGCGATTTT	59.747	43.478	0.00	0.00	35.64	1.82
5911	12004	3.882888	ACTCCAACTCTTGCGATTTTTGA	59.117	39.130	0.00	0.00	0.00	2.69
5916	12009	5.106396	CCAACTCTTGCGATTTTTGAGATCT	60.106	40.000	0.00	0.00	0.00	2.75
5977	12070	1.077429	GATCCGGGAAGCCAGCTTT	60.077	57.895	6.31	0.00	36.26	3.51
6060	12153	2.103601	GCTACCGAACAGGCCCTTATTA	59.896	50.000	0.00	0.00	46.52	0.98
6061	12154	3.802675	GCTACCGAACAGGCCCTTATTAG	60.803	52.174	0.00	0.00	46.52	1.73
6066	12159	4.451900	CGAACAGGCCCTTATTAGACAAT	58.548	43.478	0.00	0.00	0.00	2.71
6067	12160	4.881850	CGAACAGGCCCTTATTAGACAATT	59.118	41.667	0.00	0.00	0.00	2.32
6068	12161	5.220854	CGAACAGGCCCTTATTAGACAATTG	60.221	44.000	3.24	3.24	0.00	2.32
6069	12162	3.954258	ACAGGCCCTTATTAGACAATTGC	59.046	43.478	5.05	0.00	0.00	3.56
6070	12163	4.210331	CAGGCCCTTATTAGACAATTGCT	58.790	43.478	5.05	6.49	0.00	3.91
6071	12164	4.276926	CAGGCCCTTATTAGACAATTGCTC	59.723	45.833	5.05	2.73	0.00	4.26
6072	12165	3.251004	GGCCCTTATTAGACAATTGCTCG	59.749	47.826	5.05	0.00	0.00	5.03
6073	12166	3.877508	GCCCTTATTAGACAATTGCTCGT	59.122	43.478	5.05	0.00	0.00	4.18
6074	12167	4.260784	GCCCTTATTAGACAATTGCTCGTG	60.261	45.833	5.05	0.00	0.00	4.35
6075	12168	4.260784	CCCTTATTAGACAATTGCTCGTGC	60.261	45.833	5.05	1.71	40.20	5.34
6076	12169	4.508971	CTTATTAGACAATTGCTCGTGCG	58.491	43.478	5.05	0.00	43.34	5.34
6077	12170	1.790755	TTAGACAATTGCTCGTGCGT	58.209	45.000	5.05	0.00	43.34	5.24
6078	12171	1.790755	TAGACAATTGCTCGTGCGTT	58.209	45.000	5.05	0.00	43.34	4.84
6079	12172	0.235665	AGACAATTGCTCGTGCGTTG	59.764	50.000	19.34	19.34	43.34	4.10
6080	12173	1.330080	GACAATTGCTCGTGCGTTGC	61.330	55.000	20.29	12.91	43.34	4.17
6081	12174	1.370293	CAATTGCTCGTGCGTTGCA	60.370	52.632	12.35	9.75	43.34	4.08
6083	12176	2.024022	TTGCTCGTGCGTTGCAAC	59.976	55.556	19.89	19.89	41.47	4.17
6094	12187	3.554962	GTTGCAACGGGGGTATACA	57.445	52.632	14.90	0.00	0.00	2.29
6095	12188	2.047002	GTTGCAACGGGGGTATACAT	57.953	50.000	14.90	0.00	0.00	2.29
6096	12189	3.196939	GTTGCAACGGGGGTATACATA	57.803	47.619	14.90	0.00	0.00	2.29
6097	12190	3.746940	GTTGCAACGGGGGTATACATAT	58.253	45.455	14.90	0.00	0.00	1.78
6098	12191	3.688694	TGCAACGGGGGTATACATATC	57.311	47.619	5.01	0.00	0.00	1.63
6099	12192	3.244582	TGCAACGGGGGTATACATATCT	58.755	45.455	5.01	0.00	0.00	1.98
6100	12193	3.649023	TGCAACGGGGGTATACATATCTT	59.351	43.478	5.01	0.00	0.00	2.40
6101	12194	4.839550	TGCAACGGGGGTATACATATCTTA	59.160	41.667	5.01	0.00	0.00	2.10
6102	12195	5.307456	TGCAACGGGGGTATACATATCTTAA	59.693	40.000	5.01	0.00	0.00	1.85
6103	12196	6.013206	TGCAACGGGGGTATACATATCTTAAT	60.013	38.462	5.01	0.00	0.00	1.40
6104	12197	6.315393	GCAACGGGGGTATACATATCTTAATG	59.685	42.308	5.01	0.00	0.00	1.90
6105	12198	7.617225	CAACGGGGGTATACATATCTTAATGA	58.383	38.462	5.01	0.00	0.00	2.57
6106	12199	7.989947	ACGGGGGTATACATATCTTAATGAT	57.010	36.000	5.01	0.00	39.11	2.45
6107	12200	8.388656	ACGGGGGTATACATATCTTAATGATT	57.611	34.615	5.01	0.00	36.65	2.57
6108	12201	8.832735	ACGGGGGTATACATATCTTAATGATTT	58.167	33.333	5.01	0.00	36.65	2.17
6122	12215	6.962678	TCTTAATGATTTAACTTTAACCGCGC	59.037	34.615	0.00	0.00	0.00	6.86
6123	12216	4.957759	ATGATTTAACTTTAACCGCGCT	57.042	36.364	5.56	0.00	0.00	5.92
6124	12217	6.425577	AATGATTTAACTTTAACCGCGCTA	57.574	33.333	5.56	0.00	0.00	4.26
6125	12218	5.859521	TGATTTAACTTTAACCGCGCTAA	57.140	34.783	5.56	0.00	0.00	3.09
6126	12219	6.238610	TGATTTAACTTTAACCGCGCTAAA	57.761	33.333	5.56	6.02	0.00	1.85
6127	12220	6.079120	TGATTTAACTTTAACCGCGCTAAAC	58.921	36.000	5.56	0.00	0.00	2.01
6128	12221	5.671742	TTTAACTTTAACCGCGCTAAACT	57.328	34.783	5.56	0.00	0.00	2.66
6129	12222	5.671742	TTAACTTTAACCGCGCTAAACTT	57.328	34.783	5.56	5.07	0.00	2.66
6130	12223	6.777526	TTAACTTTAACCGCGCTAAACTTA	57.222	33.333	5.56	4.18	0.00	2.24
6131	12224	5.868043	AACTTTAACCGCGCTAAACTTAT	57.132	34.783	5.56	0.00	0.00	1.73
6132	12225	6.966435	AACTTTAACCGCGCTAAACTTATA	57.034	33.333	5.56	0.00	0.00	0.98
6133	12226	6.336514	ACTTTAACCGCGCTAAACTTATAC	57.663	37.500	5.56	0.00	0.00	1.47
6134	12227	5.291858	ACTTTAACCGCGCTAAACTTATACC	59.708	40.000	5.56	0.00	0.00	2.73
6135	12228	3.531934	AACCGCGCTAAACTTATACCT	57.468	42.857	5.56	0.00	0.00	3.08
6136	12229	3.531934	ACCGCGCTAAACTTATACCTT	57.468	42.857	5.56	0.00	0.00	3.50
6137	12230	3.865446	ACCGCGCTAAACTTATACCTTT	58.135	40.909	5.56	0.00	0.00	3.11
6138	12231	5.009854	ACCGCGCTAAACTTATACCTTTA	57.990	39.130	5.56	0.00	0.00	1.85
6139	12232	5.045872	ACCGCGCTAAACTTATACCTTTAG	58.954	41.667	5.56	4.79	34.39	1.85
6140	12233	4.446719	CCGCGCTAAACTTATACCTTTAGG	59.553	45.833	5.56	0.00	42.17	2.69
6141	12234	5.284079	CGCGCTAAACTTATACCTTTAGGA	58.716	41.667	5.56	0.00	38.94	2.94
6142	12235	5.750067	CGCGCTAAACTTATACCTTTAGGAA	59.250	40.000	5.56	0.00	38.94	3.36
6143	12236	6.292008	CGCGCTAAACTTATACCTTTAGGAAC	60.292	42.308	5.56	0.00	38.94	3.62
6144	12237	6.536224	GCGCTAAACTTATACCTTTAGGAACA	59.464	38.462	0.00	0.00	38.94	3.18
6145	12238	7.226128	GCGCTAAACTTATACCTTTAGGAACAT	59.774	37.037	0.00	0.00	38.94	2.71
6146	12239	8.548721	CGCTAAACTTATACCTTTAGGAACATG	58.451	37.037	2.06	0.00	38.94	3.21
6147	12240	9.392259	GCTAAACTTATACCTTTAGGAACATGT	57.608	33.333	2.06	0.00	38.94	3.21
6149	12242	7.625828	AACTTATACCTTTAGGAACATGTGC	57.374	36.000	0.00	0.00	38.94	4.57
6150	12243	6.717289	ACTTATACCTTTAGGAACATGTGCA	58.283	36.000	6.08	0.00	38.94	4.57
6151	12244	7.346471	ACTTATACCTTTAGGAACATGTGCAT	58.654	34.615	6.08	0.00	38.94	3.96
6152	12245	7.834181	ACTTATACCTTTAGGAACATGTGCATT	59.166	33.333	6.08	0.00	38.94	3.56
6153	12246	4.789012	ACCTTTAGGAACATGTGCATTG	57.211	40.909	6.08	0.00	38.94	2.82
6154	12247	3.056607	ACCTTTAGGAACATGTGCATTGC	60.057	43.478	6.08	0.46	38.94	3.56
6155	12248	3.194116	CCTTTAGGAACATGTGCATTGCT	59.806	43.478	6.08	0.00	37.39	3.91
6156	12249	4.398988	CCTTTAGGAACATGTGCATTGCTA	59.601	41.667	6.08	0.00	37.39	3.49
6157	12250	4.963276	TTAGGAACATGTGCATTGCTAC	57.037	40.909	6.08	7.17	29.61	3.58
6158	12251	2.794103	AGGAACATGTGCATTGCTACA	58.206	42.857	6.08	12.38	0.00	2.74
6159	12252	3.156293	AGGAACATGTGCATTGCTACAA	58.844	40.909	6.08	0.00	0.00	2.41
6160	12253	3.057315	AGGAACATGTGCATTGCTACAAC	60.057	43.478	6.08	0.00	0.00	3.32
6161	12254	3.057315	GGAACATGTGCATTGCTACAACT	60.057	43.478	6.08	2.49	0.00	3.16
6162	12255	3.837213	ACATGTGCATTGCTACAACTC	57.163	42.857	10.49	0.00	0.00	3.01
6163	12256	3.148412	ACATGTGCATTGCTACAACTCA	58.852	40.909	10.49	0.00	0.00	3.41
6164	12257	3.058016	ACATGTGCATTGCTACAACTCAC	60.058	43.478	10.49	0.00	0.00	3.51
6165	12258	2.570135	TGTGCATTGCTACAACTCACA	58.430	42.857	10.49	10.52	0.00	3.58
6166	12259	2.948315	TGTGCATTGCTACAACTCACAA	59.052	40.909	10.49	0.00	31.12	3.33
6167	12260	3.379688	TGTGCATTGCTACAACTCACAAA	59.620	39.130	10.49	0.00	31.12	2.83
6168	12261	4.037803	TGTGCATTGCTACAACTCACAAAT	59.962	37.500	10.49	0.00	31.12	2.32
6169	12262	4.618489	GTGCATTGCTACAACTCACAAATC	59.382	41.667	10.49	0.00	0.00	2.17
6170	12263	4.277921	TGCATTGCTACAACTCACAAATCA	59.722	37.500	10.49	0.00	0.00	2.57
6171	12264	5.221204	TGCATTGCTACAACTCACAAATCAA	60.221	36.000	10.49	0.00	0.00	2.57
6172	12265	5.865552	GCATTGCTACAACTCACAAATCAAT	59.134	36.000	0.16	0.00	0.00	2.57
6173	12266	7.028962	GCATTGCTACAACTCACAAATCAATA	58.971	34.615	0.16	0.00	0.00	1.90
6174	12267	7.703621	GCATTGCTACAACTCACAAATCAATAT	59.296	33.333	0.16	0.00	0.00	1.28
6201	12294	6.865834	ATGACTGTATTTCCACTCTTCTCT	57.134	37.500	0.00	0.00	0.00	3.10
6202	12295	6.274157	TGACTGTATTTCCACTCTTCTCTC	57.726	41.667	0.00	0.00	0.00	3.20
6203	12296	6.013379	TGACTGTATTTCCACTCTTCTCTCT	58.987	40.000	0.00	0.00	0.00	3.10
6204	12297	6.495181	TGACTGTATTTCCACTCTTCTCTCTT	59.505	38.462	0.00	0.00	0.00	2.85
6205	12298	7.670140	TGACTGTATTTCCACTCTTCTCTCTTA	59.330	37.037	0.00	0.00	0.00	2.10
6206	12299	8.062065	ACTGTATTTCCACTCTTCTCTCTTAG	57.938	38.462	0.00	0.00	0.00	2.18
6207	12300	7.123547	ACTGTATTTCCACTCTTCTCTCTTAGG	59.876	40.741	0.00	0.00	0.00	2.69
6208	12301	4.810191	TTTCCACTCTTCTCTCTTAGGC	57.190	45.455	0.00	0.00	0.00	3.93
6209	12302	3.748645	TCCACTCTTCTCTCTTAGGCT	57.251	47.619	0.00	0.00	0.00	4.58
6210	12303	3.360867	TCCACTCTTCTCTCTTAGGCTG	58.639	50.000	0.00	0.00	0.00	4.85
6211	12304	2.430332	CCACTCTTCTCTCTTAGGCTGG	59.570	54.545	0.00	0.00	0.00	4.85
6212	12305	3.096092	CACTCTTCTCTCTTAGGCTGGT	58.904	50.000	0.00	0.00	0.00	4.00
6213	12306	3.130340	CACTCTTCTCTCTTAGGCTGGTC	59.870	52.174	0.00	0.00	0.00	4.02
6214	12307	3.245443	ACTCTTCTCTCTTAGGCTGGTCA	60.245	47.826	0.00	0.00	0.00	4.02
6215	12308	3.960102	CTCTTCTCTCTTAGGCTGGTCAT	59.040	47.826	0.00	0.00	0.00	3.06
6216	12309	5.130705	TCTTCTCTCTTAGGCTGGTCATA	57.869	43.478	0.00	0.00	0.00	2.15
6217	12310	5.136828	TCTTCTCTCTTAGGCTGGTCATAG	58.863	45.833	0.00	0.00	0.00	2.23
6218	12311	4.528076	TCTCTCTTAGGCTGGTCATAGT	57.472	45.455	0.00	0.00	0.00	2.12
6219	12312	4.211125	TCTCTCTTAGGCTGGTCATAGTG	58.789	47.826	0.00	0.00	0.00	2.74
6220	12313	4.079730	TCTCTCTTAGGCTGGTCATAGTGA	60.080	45.833	0.00	0.00	0.00	3.41
6221	12314	4.211125	TCTCTTAGGCTGGTCATAGTGAG	58.789	47.826	0.00	0.00	0.00	3.51
6222	12315	3.300388	TCTTAGGCTGGTCATAGTGAGG	58.700	50.000	0.00	0.00	0.00	3.86
6223	12316	3.052869	TCTTAGGCTGGTCATAGTGAGGA	60.053	47.826	0.00	0.00	0.00	3.71
6224	12317	1.786937	AGGCTGGTCATAGTGAGGAG	58.213	55.000	0.00	0.00	0.00	3.69
6225	12318	1.007721	AGGCTGGTCATAGTGAGGAGT	59.992	52.381	0.00	0.00	0.00	3.85
6226	12319	2.245028	AGGCTGGTCATAGTGAGGAGTA	59.755	50.000	0.00	0.00	0.00	2.59
6227	12320	3.031736	GGCTGGTCATAGTGAGGAGTAA	58.968	50.000	0.00	0.00	0.00	2.24
6228	12321	3.181474	GGCTGGTCATAGTGAGGAGTAAC	60.181	52.174	0.00	0.00	0.00	2.50
6229	12322	3.702045	GCTGGTCATAGTGAGGAGTAACT	59.298	47.826	0.00	0.00	0.00	2.24
6230	12323	4.160626	GCTGGTCATAGTGAGGAGTAACTT	59.839	45.833	0.00	0.00	0.00	2.66
6231	12324	5.360144	GCTGGTCATAGTGAGGAGTAACTTA	59.640	44.000	0.00	0.00	0.00	2.24
6232	12325	6.041069	GCTGGTCATAGTGAGGAGTAACTTAT	59.959	42.308	0.00	0.00	0.00	1.73
6233	12326	7.230913	GCTGGTCATAGTGAGGAGTAACTTATA	59.769	40.741	0.00	0.00	0.00	0.98
6234	12327	8.461249	TGGTCATAGTGAGGAGTAACTTATAC	57.539	38.462	0.00	0.00	0.00	1.47
6235	12328	8.280084	TGGTCATAGTGAGGAGTAACTTATACT	58.720	37.037	0.00	0.00	0.00	2.12
6236	12329	9.790344	GGTCATAGTGAGGAGTAACTTATACTA	57.210	37.037	0.00	0.00	0.00	1.82
6241	12334	8.735692	AGTGAGGAGTAACTTATACTAGTGTC	57.264	38.462	5.39	0.00	0.00	3.67
6242	12335	8.327271	AGTGAGGAGTAACTTATACTAGTGTCA	58.673	37.037	5.39	0.00	0.00	3.58
6243	12336	9.122779	GTGAGGAGTAACTTATACTAGTGTCAT	57.877	37.037	5.39	0.00	0.00	3.06
6244	12337	9.121658	TGAGGAGTAACTTATACTAGTGTCATG	57.878	37.037	5.39	0.00	0.00	3.07
6245	12338	7.942990	AGGAGTAACTTATACTAGTGTCATGC	58.057	38.462	5.39	0.00	0.00	4.06
6246	12339	7.560262	AGGAGTAACTTATACTAGTGTCATGCA	59.440	37.037	5.39	0.00	0.00	3.96
6247	12340	8.361139	GGAGTAACTTATACTAGTGTCATGCAT	58.639	37.037	5.39	0.00	0.00	3.96
6264	12357	7.588497	TCATGCATATGACACTAGTCTAAGT	57.412	36.000	6.97	0.00	45.20	2.24
6265	12358	8.011844	TCATGCATATGACACTAGTCTAAGTT	57.988	34.615	6.97	0.00	45.20	2.66
6266	12359	9.131791	TCATGCATATGACACTAGTCTAAGTTA	57.868	33.333	6.97	0.00	45.20	2.24
6267	12360	9.404348	CATGCATATGACACTAGTCTAAGTTAG	57.596	37.037	6.97	3.29	45.20	2.34
6268	12361	8.521170	TGCATATGACACTAGTCTAAGTTAGT	57.479	34.615	6.97	0.00	45.20	2.24
6269	12362	9.623000	TGCATATGACACTAGTCTAAGTTAGTA	57.377	33.333	6.97	0.00	45.20	1.82
6270	12363	9.881529	GCATATGACACTAGTCTAAGTTAGTAC	57.118	37.037	6.97	7.00	45.20	2.73
6275	12368	9.565090	TGACACTAGTCTAAGTTAGTACTTTCA	57.435	33.333	15.58	11.83	42.33	2.69
6282	12375	9.021807	AGTCTAAGTTAGTACTTTCATAGTGCA	57.978	33.333	9.71	0.00	41.85	4.57
6283	12376	9.635520	GTCTAAGTTAGTACTTTCATAGTGCAA	57.364	33.333	9.71	0.00	41.85	4.08
6286	12379	8.904099	AAGTTAGTACTTTCATAGTGCAAAGT	57.096	30.769	0.00	4.73	41.85	2.66
6287	12380	9.991906	AAGTTAGTACTTTCATAGTGCAAAGTA	57.008	29.630	0.00	2.94	41.85	2.24
6288	12381	9.991906	AGTTAGTACTTTCATAGTGCAAAGTAA	57.008	29.630	0.00	0.00	43.43	2.24
6290	12383	9.767228	TTAGTACTTTCATAGTGCAAAGTAACA	57.233	29.630	0.00	0.00	43.43	2.41
6291	12384	8.848474	AGTACTTTCATAGTGCAAAGTAACAT	57.152	30.769	7.76	0.00	43.43	2.71

Position	MSA Position	Penalty	Sequence	TM	GC	Self any TH	Self end TH	Hairpin	End Stability
12	13	7.212976	ACACATTAGGACATCTACAATGCTAG	58.787	38.462	0.00	0.00	0.00	3.42
14	15	5.994250	ACACATTAGGACATCTACAATGCT	58.006	37.500	0.00	0.00	0.00	3.79
27	28	4.537751	TGTTTCCCAACAACACATTAGGA	58.462	39.130	0.00	0.00	40.10	2.94
75	76	1.737793	GATCTTGGGTGTTTGTAGGCG	59.262	52.381	0.00	0.00	0.00	5.52
82	83	7.417116	GCATCTTCATATTGATCTTGGGTGTTT	60.417	37.037	0.00	0.00	0.00	2.83
83	84	6.040166	GCATCTTCATATTGATCTTGGGTGTT	59.960	38.462	0.00	0.00	0.00	3.32
105	106	3.807622	CGTGATCTTAACCCGTTATGCAT	59.192	43.478	3.79	3.79	0.00	3.96
114	115	4.124970	GGTAATGGTCGTGATCTTAACCC	58.875	47.826	8.03	0.00	0.00	4.11
119	120	2.494471	TGACGGTAATGGTCGTGATCTT	59.506	45.455	0.00	0.00	39.88	2.40
120	121	2.097036	TGACGGTAATGGTCGTGATCT	58.903	47.619	0.00	0.00	39.88	2.75
164	165	4.639310	GGGATGTACGATCTACACCGATAT	59.361	45.833	7.04	0.00	0.00	1.63
166	167	2.818432	GGGATGTACGATCTACACCGAT	59.182	50.000	7.04	0.00	0.00	4.18
182	183	2.100631	GTGGACAGTTCGCGGGATG	61.101	63.158	6.13	4.94	0.00	3.51
183	184	2.264794	GTGGACAGTTCGCGGGAT	59.735	61.111	6.13	0.00	0.00	3.85
185	186	3.734682	TATTCGTGGACAGTTCGCGGG	62.735	57.143	14.91	0.00	38.48	6.13
186	187	0.457166	TATTCGTGGACAGTTCGCGG	60.457	55.000	14.91	0.00	38.48	6.46
187	188	0.914551	CTATTCGTGGACAGTTCGCG	59.085	55.000	8.64	8.64	39.20	5.87
189	190	2.527100	GGACTATTCGTGGACAGTTCG	58.473	52.381	0.00	0.00	0.00	3.95
190	191	2.496470	AGGGACTATTCGTGGACAGTTC	59.504	50.000	0.00	0.00	36.02	3.01
221	250	3.140814	GGGGCCATGCTTTCGGTC	61.141	66.667	4.39	0.00	0.00	4.79
340	369	3.509967	TCTGGTGTCATTTTCTAGCGAGA	59.490	43.478	0.00	0.00	0.00	4.04
341	370	3.849911	TCTGGTGTCATTTTCTAGCGAG	58.150	45.455	0.00	0.00	0.00	5.03
347	376	2.808543	GCGACTTCTGGTGTCATTTTCT	59.191	45.455	0.00	0.00	34.37	2.52
353	382	1.170290	TCGAGCGACTTCTGGTGTCA	61.170	55.000	0.00	0.00	34.37	3.58
396	425	4.837093	TTCCTCCATTAACCTTCATCGT	57.163	40.909	0.00	0.00	0.00	3.73
400	429	4.018415	CCCTCTTTCCTCCATTAACCTTCA	60.018	45.833	0.00	0.00	0.00	3.02
424	453	2.087344	GACGATTTCGGCTTCCCAC	58.913	57.895	4.84	0.00	45.57	4.61
463	492	1.745768	CGTAAACCGTCCGCGATTCC	61.746	60.000	8.23	0.00	41.33	3.01
471	500	1.153686	GGAGGCTCGTAAACCGTCC	60.154	63.158	8.69	0.00	37.94	4.79
472	501	1.153686	GGGAGGCTCGTAAACCGTC	60.154	63.158	8.69	0.00	37.94	4.79
473	502	2.976356	GGGAGGCTCGTAAACCGT	59.024	61.111	8.69	0.00	37.94	4.83
483	512	4.514401	CTGTAAAATCTTTACGGGAGGCT	58.486	43.478	9.36	0.00	0.00	4.58
495	524	0.988832	TGGCCCGACCTGTAAAATCT	59.011	50.000	0.00	0.00	40.22	2.40
504	533	0.678684	CGGTAAAAATGGCCCGACCT	60.679	55.000	0.00	0.00	43.01	3.85
505	534	0.677414	TCGGTAAAAATGGCCCGACC	60.677	55.000	0.00	0.00	43.99	4.79
507	536	1.166989	GTTCGGTAAAAATGGCCCGA	58.833	50.000	0.00	0.00	46.90	5.14
524	553	0.324091	ACATCCGACCCGACTAGGTT	60.324	55.000	0.00	0.00	41.42	3.50
532	561	0.947180	ACGTCAAAACATCCGACCCG	60.947	55.000	0.00	0.00	0.00	5.28
533	562	0.794473	GACGTCAAAACATCCGACCC	59.206	55.000	11.55	0.00	0.00	4.46
534	563	0.794473	GGACGTCAAAACATCCGACC	59.206	55.000	18.91	0.00	26.21	4.79
536	565	1.069513	ACAGGACGTCAAAACATCCGA	59.930	47.619	18.91	0.00	42.67	4.55
550	579	5.854866	GCATTTTCTAACGGTTTTACAGGAC	59.145	40.000	0.00	0.00	0.00	3.85
551	580	5.334260	CGCATTTTCTAACGGTTTTACAGGA	60.334	40.000	0.00	0.00	0.00	3.86
552	581	4.849383	CGCATTTTCTAACGGTTTTACAGG	59.151	41.667	0.00	0.00	0.00	4.00
554	583	5.442402	GTCGCATTTTCTAACGGTTTTACA	58.558	37.500	0.00	0.00	0.00	2.41
555	584	4.847757	GGTCGCATTTTCTAACGGTTTTAC	59.152	41.667	0.00	0.00	0.00	2.01
556	585	4.083377	GGGTCGCATTTTCTAACGGTTTTA	60.083	41.667	0.00	0.00	0.00	1.52
557	586	3.304861	GGGTCGCATTTTCTAACGGTTTT	60.305	43.478	0.00	0.00	0.00	2.43
559	588	1.808343	GGGTCGCATTTTCTAACGGTT	59.192	47.619	0.00	0.00	0.00	4.44
561	590	1.444836	TGGGTCGCATTTTCTAACGG	58.555	50.000	0.00	0.00	0.00	4.44
563	592	3.907894	TGTTGGGTCGCATTTTCTAAC	57.092	42.857	0.00	0.00	0.00	2.34
564	593	3.254657	CCTTGTTGGGTCGCATTTTCTAA	59.745	43.478	0.00	0.00	0.00	2.10
566	595	1.613437	CCTTGTTGGGTCGCATTTTCT	59.387	47.619	0.00	0.00	0.00	2.52
567	596	1.339929	ACCTTGTTGGGTCGCATTTTC	59.660	47.619	0.00	0.00	41.11	2.29
582	613	4.566759	CGTGACACATCCTGTATAACCTTG	59.433	45.833	6.37	0.00	31.03	3.61
583	614	4.382685	CCGTGACACATCCTGTATAACCTT	60.383	45.833	6.37	0.00	31.03	3.50
585	616	3.131577	TCCGTGACACATCCTGTATAACC	59.868	47.826	6.37	0.00	31.03	2.85
601	632	3.093814	TGCTATGTACTTCCTTCCGTGA	58.906	45.455	0.00	0.00	0.00	4.35
602	633	3.520290	TGCTATGTACTTCCTTCCGTG	57.480	47.619	0.00	0.00	0.00	4.94
604	635	5.584649	TCATTTTGCTATGTACTTCCTTCCG	59.415	40.000	0.00	0.00	0.00	4.30
605	636	6.456988	CGTCATTTTGCTATGTACTTCCTTCC	60.457	42.308	0.00	0.00	0.00	3.46
611	705	6.238211	GCATCTCGTCATTTTGCTATGTACTT	60.238	38.462	0.00	0.00	0.00	2.24
622	716	2.550978	CCGTAGGCATCTCGTCATTTT	58.449	47.619	0.00	0.00	46.14	1.82
623	717	2.225068	CCGTAGGCATCTCGTCATTT	57.775	50.000	0.00	0.00	46.14	2.32
624	718	3.967886	CCGTAGGCATCTCGTCATT	57.032	52.632	0.00	0.00	46.14	2.57
637	731	4.097714	TGTAATTTACGAAGTCGCCGTAG	58.902	43.478	0.00	0.00	43.93	3.51
638	732	4.090138	TGTAATTTACGAAGTCGCCGTA	57.910	40.909	0.00	0.00	43.93	4.02
639	733	2.945278	TGTAATTTACGAAGTCGCCGT	58.055	42.857	0.00	0.00	43.93	5.68
640	734	3.609373	TCTTGTAATTTACGAAGTCGCCG	59.391	43.478	0.00	0.00	43.93	6.46
641	735	5.290158	TCATCTTGTAATTTACGAAGTCGCC	59.710	40.000	0.00	0.00	43.93	5.54
642	736	6.327177	TCATCTTGTAATTTACGAAGTCGC	57.673	37.500	0.00	0.00	43.93	5.19
643	737	9.995379	CATATCATCTTGTAATTTACGAAGTCG	57.005	33.333	0.00	0.00	43.93	4.18
644	738	9.798885	GCATATCATCTTGTAATTTACGAAGTC	57.201	33.333	13.54	0.00	43.93	3.01
646	740	7.952101	CGGCATATCATCTTGTAATTTACGAAG	59.048	37.037	2.30	7.08	0.00	3.79
647	741	7.095397	CCGGCATATCATCTTGTAATTTACGAA	60.095	37.037	0.00	0.00	0.00	3.85
648	742	6.367695	CCGGCATATCATCTTGTAATTTACGA	59.632	38.462	0.00	0.00	0.00	3.43
649	743	6.534059	CCGGCATATCATCTTGTAATTTACG	58.466	40.000	0.00	0.00	0.00	3.18
650	744	6.149474	AGCCGGCATATCATCTTGTAATTTAC	59.851	38.462	31.54	0.00	0.00	2.01
651	745	6.237901	AGCCGGCATATCATCTTGTAATTTA	58.762	36.000	31.54	0.00	0.00	1.40
652	746	5.072741	AGCCGGCATATCATCTTGTAATTT	58.927	37.500	31.54	0.00	0.00	1.82
653	747	4.655963	AGCCGGCATATCATCTTGTAATT	58.344	39.130	31.54	0.00	0.00	1.40
654	748	4.256920	GAGCCGGCATATCATCTTGTAAT	58.743	43.478	31.54	0.06	0.00	1.89
655	749	3.070878	TGAGCCGGCATATCATCTTGTAA	59.929	43.478	31.54	0.00	0.00	2.41
656	750	2.632512	TGAGCCGGCATATCATCTTGTA	59.367	45.455	31.54	0.00	0.00	2.41
657	751	1.417517	TGAGCCGGCATATCATCTTGT	59.582	47.619	31.54	1.71	0.00	3.16
658	752	2.074576	CTGAGCCGGCATATCATCTTG	58.925	52.381	31.54	7.95	0.00	3.02
659	753	1.696336	ACTGAGCCGGCATATCATCTT	59.304	47.619	31.54	3.33	0.00	2.40
660	754	1.274728	GACTGAGCCGGCATATCATCT	59.725	52.381	31.54	11.40	0.00	2.90
661	755	1.274728	AGACTGAGCCGGCATATCATC	59.725	52.381	31.54	19.98	0.00	2.92
662	756	1.346062	AGACTGAGCCGGCATATCAT	58.654	50.000	31.54	13.17	0.00	2.45
663	757	1.123077	AAGACTGAGCCGGCATATCA	58.877	50.000	31.54	22.44	0.00	2.15
664	758	2.139118	GAAAGACTGAGCCGGCATATC	58.861	52.381	31.54	18.63	0.00	1.63
665	759	1.539065	CGAAAGACTGAGCCGGCATAT	60.539	52.381	31.54	8.11	0.00	1.78
666	760	0.179111	CGAAAGACTGAGCCGGCATA	60.179	55.000	31.54	16.21	0.00	3.14
667	761	1.448540	CGAAAGACTGAGCCGGCAT	60.449	57.895	31.54	14.28	0.00	4.40
668	762	2.048222	CGAAAGACTGAGCCGGCA	60.048	61.111	31.54	7.98	0.00	5.69
669	763	2.815647	CCGAAAGACTGAGCCGGC	60.816	66.667	21.89	21.89	33.47	6.13
670	764	1.153745	CTCCGAAAGACTGAGCCGG	60.154	63.158	0.00	0.00	41.36	6.13
671	765	1.153745	CCTCCGAAAGACTGAGCCG	60.154	63.158	0.00	0.00	0.00	5.52
672	766	1.448717	GCCTCCGAAAGACTGAGCC	60.449	63.158	0.00	0.00	0.00	4.70
673	767	1.807573	CGCCTCCGAAAGACTGAGC	60.808	63.158	0.00	0.00	36.29	4.26
674	768	1.807573	GCGCCTCCGAAAGACTGAG	60.808	63.158	0.00	0.00	36.29	3.35
675	769	2.214181	GAGCGCCTCCGAAAGACTGA	62.214	60.000	2.29	0.00	36.29	3.41
676	770	1.807573	GAGCGCCTCCGAAAGACTG	60.808	63.158	2.29	0.00	36.29	3.51
677	771	1.608717	ATGAGCGCCTCCGAAAGACT	61.609	55.000	2.29	0.00	36.29	3.24
678	772	0.102481	TATGAGCGCCTCCGAAAGAC	59.898	55.000	2.29	0.00	36.29	3.01
679	773	0.385751	CTATGAGCGCCTCCGAAAGA	59.614	55.000	2.29	0.00	36.29	2.52
680	774	0.598680	CCTATGAGCGCCTCCGAAAG	60.599	60.000	2.29	0.00	36.29	2.62
681	775	1.441729	CCTATGAGCGCCTCCGAAA	59.558	57.895	2.29	0.00	36.29	3.46
682	776	2.498941	CCCTATGAGCGCCTCCGAA	61.499	63.158	2.29	0.00	36.29	4.30
683	777	2.912542	CCCTATGAGCGCCTCCGA	60.913	66.667	2.29	0.00	36.29	4.55
684	778	3.996124	CCCCTATGAGCGCCTCCG	61.996	72.222	2.29	0.00	37.57	4.63
685	779	1.533273	TACCCCTATGAGCGCCTCC	60.533	63.158	2.29	0.00	0.00	4.30
686	780	1.536943	CCTACCCCTATGAGCGCCTC	61.537	65.000	2.29	1.22	0.00	4.70
687	781	1.534235	CCTACCCCTATGAGCGCCT	60.534	63.158	2.29	0.00	0.00	5.52
688	782	2.584391	CCCTACCCCTATGAGCGCC	61.584	68.421	2.29	0.00	0.00	6.53
689	783	1.837499	ACCCTACCCCTATGAGCGC	60.837	63.158	0.00	0.00	0.00	5.92
690	784	0.759436	ACACCCTACCCCTATGAGCG	60.759	60.000	0.00	0.00	0.00	5.03
691	785	0.759346	CACACCCTACCCCTATGAGC	59.241	60.000	0.00	0.00	0.00	4.26
692	786	0.759346	GCACACCCTACCCCTATGAG	59.241	60.000	0.00	0.00	0.00	2.90
693	787	1.046472	CGCACACCCTACCCCTATGA	61.046	60.000	0.00	0.00	0.00	2.15
694	788	1.335132	ACGCACACCCTACCCCTATG	61.335	60.000	0.00	0.00	0.00	2.23
695	789	1.002533	ACGCACACCCTACCCCTAT	59.997	57.895	0.00	0.00	0.00	2.57
696	790	1.985662	CACGCACACCCTACCCCTA	60.986	63.158	0.00	0.00	0.00	3.53
697	791	2.735151	TACACGCACACCCTACCCCT	62.735	60.000	0.00	0.00	0.00	4.79
698	792	1.619807	ATACACGCACACCCTACCCC	61.620	60.000	0.00	0.00	0.00	4.95
699	793	0.461339	CATACACGCACACCCTACCC	60.461	60.000	0.00	0.00	0.00	3.69
700	794	1.087771	GCATACACGCACACCCTACC	61.088	60.000	0.00	0.00	0.00	3.18
701	795	0.390603	TGCATACACGCACACCCTAC	60.391	55.000	0.00	0.00	36.86	3.18
702	796	0.539518	ATGCATACACGCACACCCTA	59.460	50.000	0.00	0.00	46.56	3.53
703	797	0.322456	AATGCATACACGCACACCCT	60.322	50.000	0.00	0.00	46.56	4.34
704	798	0.098728	GAATGCATACACGCACACCC	59.901	55.000	0.00	0.00	46.56	4.61
705	799	0.801872	TGAATGCATACACGCACACC	59.198	50.000	0.00	0.00	46.56	4.16
706	800	2.830772	ATGAATGCATACACGCACAC	57.169	45.000	0.00	0.00	46.56	3.82
707	801	3.791245	TCTATGAATGCATACACGCACA	58.209	40.909	0.00	0.00	46.56	4.57
708	802	4.794248	TTCTATGAATGCATACACGCAC	57.206	40.909	0.00	0.00	46.56	5.34
710	804	6.429624	TCATTTTCTATGAATGCATACACGC	58.570	36.000	0.00	0.00	35.94	5.34
711	805	7.585210	CACTCATTTTCTATGAATGCATACACG	59.415	37.037	0.00	0.00	35.94	4.49
712	806	8.400947	ACACTCATTTTCTATGAATGCATACAC	58.599	33.333	0.00	0.00	35.94	2.90
713	807	8.510243	ACACTCATTTTCTATGAATGCATACA	57.490	30.769	0.00	0.00	35.94	2.29
717	811	9.612066	TGTATACACTCATTTTCTATGAATGCA	57.388	29.630	0.08	0.00	35.10	3.96
718	812	9.869844	GTGTATACACTCATTTTCTATGAATGC	57.130	33.333	25.56	0.00	43.25	3.56
720	814	9.817809	ACGTGTATACACTCATTTTCTATGAAT	57.182	29.630	28.53	0.00	44.34	2.57
721	815	9.083080	CACGTGTATACACTCATTTTCTATGAA	57.917	33.333	28.53	0.00	44.34	2.57
722	816	8.248253	ACACGTGTATACACTCATTTTCTATGA	58.752	33.333	28.53	0.00	44.34	2.15
723	817	8.407457	ACACGTGTATACACTCATTTTCTATG	57.593	34.615	28.53	13.89	44.34	2.23
729	823	9.678941	CTCATATACACGTGTATACACTCATTT	57.321	33.333	37.81	23.05	43.74	2.32
730	824	7.808381	GCTCATATACACGTGTATACACTCATT	59.192	37.037	37.81	23.64	43.74	2.57
731	825	7.306213	GCTCATATACACGTGTATACACTCAT	58.694	38.462	37.81	25.04	43.74	2.90
732	826	6.565247	CGCTCATATACACGTGTATACACTCA	60.565	42.308	37.81	24.13	43.74	3.41
733	827	5.789021	CGCTCATATACACGTGTATACACTC	59.211	44.000	37.81	27.41	43.74	3.51
734	828	5.237996	ACGCTCATATACACGTGTATACACT	59.762	40.000	37.81	25.40	43.74	3.55
735	829	5.446709	ACGCTCATATACACGTGTATACAC	58.553	41.667	37.81	27.49	43.74	2.90
736	830	5.678132	ACGCTCATATACACGTGTATACA	57.322	39.130	37.81	28.45	43.74	2.29
737	831	6.981379	AAACGCTCATATACACGTGTATAC	57.019	37.500	37.81	27.20	43.74	1.47
738	832	8.291740	ACATAAACGCTCATATACACGTGTATA	58.708	33.333	37.33	37.33	44.66	1.47
739	833	7.143340	ACATAAACGCTCATATACACGTGTAT	58.857	34.615	35.90	35.90	39.00	2.29
740	834	6.497437	ACATAAACGCTCATATACACGTGTA	58.503	36.000	29.15	29.15	39.00	2.90
741	835	5.345702	ACATAAACGCTCATATACACGTGT	58.654	37.500	26.52	26.52	39.00	4.49
742	836	5.685954	AGACATAAACGCTCATATACACGTG	59.314	40.000	15.48	15.48	39.00	4.49
743	837	5.828747	AGACATAAACGCTCATATACACGT	58.171	37.500	0.00	0.00	41.16	4.49
744	838	8.996933	GTATAGACATAAACGCTCATATACACG	58.003	37.037	0.00	0.00	0.00	4.49
749	843	9.794685	CATCAGTATAGACATAAACGCTCATAT	57.205	33.333	0.00	0.00	0.00	1.78
750	844	8.793592	ACATCAGTATAGACATAAACGCTCATA	58.206	33.333	0.00	0.00	0.00	2.15
751	845	7.661968	ACATCAGTATAGACATAAACGCTCAT	58.338	34.615	0.00	0.00	0.00	2.90
752	846	7.039313	ACATCAGTATAGACATAAACGCTCA	57.961	36.000	0.00	0.00	0.00	4.26
753	847	7.932120	AACATCAGTATAGACATAAACGCTC	57.068	36.000	0.00	0.00	0.00	5.03
754	848	9.811995	TTTAACATCAGTATAGACATAAACGCT	57.188	29.630	0.00	0.00	0.00	5.07
780	874	2.540157	CCGCGTTCTTCCTTTCGTTTTT	60.540	45.455	4.92	0.00	0.00	1.94
803	897	2.380064	ACACATGCCCCTTTTCTTCA	57.620	45.000	0.00	0.00	0.00	3.02
847	941	9.543783	AAACTAAGTCGATACCATTTTCCTATC	57.456	33.333	0.00	0.00	0.00	2.08
869	963	2.736670	AACAGTGAGGAGGCAAAACT	57.263	45.000	0.00	0.00	0.00	2.66
898	992	2.661718	GTGACTTCCACCCCTCAAAAA	58.338	47.619	0.00	0.00	39.86	1.94
899	993	2.358322	GTGACTTCCACCCCTCAAAA	57.642	50.000	0.00	0.00	39.86	2.44
908	1002	1.810030	GGCGATCGGTGACTTCCAC	60.810	63.158	18.30	0.00	44.95	4.02
909	1003	2.279810	TGGCGATCGGTGACTTCCA	61.280	57.895	18.30	10.70	0.00	3.53
933	1027	4.021104	ACTTCGGAAGATTCATGTCACTGA	60.021	41.667	23.74	0.00	41.60	3.41
985	1079	2.733218	CATCGTGTGCGTGTCGGT	60.733	61.111	0.00	0.00	39.49	4.69
986	1080	2.716828	GACATCGTGTGCGTGTCGG	61.717	63.158	0.00	0.00	38.38	4.79
987	1081	2.716828	GGACATCGTGTGCGTGTCG	61.717	63.158	12.54	0.00	43.32	4.35
988	1082	1.344942	GAGGACATCGTGTGCGTGTC	61.345	60.000	11.33	11.33	43.86	3.67
989	1083	1.372997	GAGGACATCGTGTGCGTGT	60.373	57.895	4.56	0.00	43.86	4.49
990	1084	2.436539	CGAGGACATCGTGTGCGTG	61.437	63.158	0.41	0.00	43.86	5.34
1404	1500	2.807895	GTCTCGCCGCGCTTGTTA	60.808	61.111	8.21	0.00	0.00	2.41
1539	1635	3.665675	AAGTGATCCTGCGGCCGTC	62.666	63.158	28.70	19.46	0.00	4.79
1595	1691	2.949678	CATCTTCGTCGGCGTCGG	60.950	66.667	24.52	11.06	39.49	4.79
1622	1718	1.082169	CCCGTGCACGAACACAATG	60.082	57.895	39.10	19.65	43.02	2.82
1931	2028	2.164624	ACAGAGCAGAACCTAGCTTACG	59.835	50.000	0.00	0.00	42.04	3.18
1935	2032	2.634940	TCAAACAGAGCAGAACCTAGCT	59.365	45.455	0.00	0.00	45.25	3.32
1937	2034	5.350914	CAGAATCAAACAGAGCAGAACCTAG	59.649	44.000	0.00	0.00	0.00	3.02
2005	2105	6.884187	TGTTCGAATTTAGTTGAGTACAAGC	58.116	36.000	0.00	0.00	36.64	4.01
2074	2177	1.803334	TGTTACCCTTACAGCTTGCG	58.197	50.000	0.00	0.00	0.00	4.85
2084	2187	4.162131	GCCCAAATCAATCATGTTACCCTT	59.838	41.667	0.00	0.00	0.00	3.95
2086	2189	3.706086	AGCCCAAATCAATCATGTTACCC	59.294	43.478	0.00	0.00	0.00	3.69
2089	2192	5.593909	CCACTAGCCCAAATCAATCATGTTA	59.406	40.000	0.00	0.00	0.00	2.41
2090	2193	4.403432	CCACTAGCCCAAATCAATCATGTT	59.597	41.667	0.00	0.00	0.00	2.71
2092	2195	3.319972	CCCACTAGCCCAAATCAATCATG	59.680	47.826	0.00	0.00	0.00	3.07
2093	2196	3.569491	CCCACTAGCCCAAATCAATCAT	58.431	45.455	0.00	0.00	0.00	2.45
2094	2197	2.358090	CCCCACTAGCCCAAATCAATCA	60.358	50.000	0.00	0.00	0.00	2.57
2095	2198	2.310538	CCCCACTAGCCCAAATCAATC	58.689	52.381	0.00	0.00	0.00	2.67
2137	3481	4.060900	AGATCATATAGCGCCACAAACAG	58.939	43.478	2.29	0.00	0.00	3.16
2154	3498	7.429374	AGAAGGAATCATTACAGTCAGATCA	57.571	36.000	0.00	0.00	0.00	2.92
2256	3600	0.528684	GTCTCATGAGCCGCACTACC	60.529	60.000	18.36	0.00	0.00	3.18
2293	3637	9.893634	TCAATCGGAATATAGGTTCTTTTTACA	57.106	29.630	0.00	0.00	0.00	2.41
2392	3736	5.241506	CCACGCAGATCCCATAATTACATTT	59.758	40.000	0.00	0.00	0.00	2.32
2463	3807	5.611128	TCTTCTGATCCTGATCCTGAAAG	57.389	43.478	4.76	3.98	37.02	2.62
2467	3811	5.105635	GCTCTATCTTCTGATCCTGATCCTG	60.106	48.000	4.76	0.00	37.02	3.86
2468	3812	5.018809	GCTCTATCTTCTGATCCTGATCCT	58.981	45.833	4.76	0.00	37.02	3.24
2469	3813	4.142403	CGCTCTATCTTCTGATCCTGATCC	60.142	50.000	4.76	0.00	37.02	3.36
2470	3814	4.142403	CCGCTCTATCTTCTGATCCTGATC	60.142	50.000	0.06	0.06	38.29	2.92
2471	3815	3.763360	CCGCTCTATCTTCTGATCCTGAT	59.237	47.826	0.00	0.00	34.32	2.90
2472	3816	3.153130	CCGCTCTATCTTCTGATCCTGA	58.847	50.000	0.00	0.00	34.32	3.86
2473	3817	3.153130	TCCGCTCTATCTTCTGATCCTG	58.847	50.000	0.00	0.00	34.32	3.86
2491	3835	0.602905	AAGTTCTCCGCCAAGTTCCG	60.603	55.000	0.00	0.00	0.00	4.30
2629	3973	2.863739	TCAGAAGTCACAGCGAATACG	58.136	47.619	0.00	0.00	42.93	3.06
2658	4002	9.750882	CGCATACTCAAATGTAGATGAAATATG	57.249	33.333	0.00	0.00	32.77	1.78
2665	4009	7.954248	GCTATTTCGCATACTCAAATGTAGATG	59.046	37.037	0.00	0.00	0.00	2.90
2683	4027	0.759346	AGGGGTAGCAGGCTATTTCG	59.241	55.000	4.06	0.00	0.00	3.46
2819	4163	9.965902	ACAACCAAGAAGATTTATCAACTCTAT	57.034	29.630	0.00	0.00	0.00	1.98
2917	7682	0.032813	AGTATTTCCGGACGGAGGGA	60.033	55.000	13.64	4.95	46.06	4.20
2918	7683	0.828677	AAGTATTTCCGGACGGAGGG	59.171	55.000	13.64	0.00	46.06	4.30
2919	7684	1.206371	ACAAGTATTTCCGGACGGAGG	59.794	52.381	13.64	0.00	46.06	4.30
2920	7685	2.537401	GACAAGTATTTCCGGACGGAG	58.463	52.381	13.64	3.15	46.06	4.63
2921	7686	1.135315	CGACAAGTATTTCCGGACGGA	60.135	52.381	1.83	9.76	43.52	4.69
2922	7687	1.274596	CGACAAGTATTTCCGGACGG	58.725	55.000	1.83	3.96	0.00	4.79
2923	7688	1.652124	CACGACAAGTATTTCCGGACG	59.348	52.381	1.83	3.25	0.00	4.79
2924	7689	1.997606	CCACGACAAGTATTTCCGGAC	59.002	52.381	1.83	0.00	0.00	4.79
2925	7690	1.894466	TCCACGACAAGTATTTCCGGA	59.106	47.619	0.00	0.00	0.00	5.14
2926	7691	2.373540	TCCACGACAAGTATTTCCGG	57.626	50.000	0.00	0.00	0.00	5.14
2927	7692	4.436852	CCATTTCCACGACAAGTATTTCCG	60.437	45.833	0.00	0.00	0.00	4.30
2928	7693	4.698304	TCCATTTCCACGACAAGTATTTCC	59.302	41.667	0.00	0.00	0.00	3.13
2929	7694	5.873179	TCCATTTCCACGACAAGTATTTC	57.127	39.130	0.00	0.00	0.00	2.17
2930	7695	6.882140	TGTATCCATTTCCACGACAAGTATTT	59.118	34.615	0.00	0.00	0.00	1.40
2931	7696	6.411376	TGTATCCATTTCCACGACAAGTATT	58.589	36.000	0.00	0.00	0.00	1.89
2932	7697	5.984725	TGTATCCATTTCCACGACAAGTAT	58.015	37.500	0.00	0.00	0.00	2.12
2933	7698	5.408880	TGTATCCATTTCCACGACAAGTA	57.591	39.130	0.00	0.00	0.00	2.24
2934	7699	4.280436	TGTATCCATTTCCACGACAAGT	57.720	40.909	0.00	0.00	0.00	3.16
2935	7700	6.705825	TCATATGTATCCATTTCCACGACAAG	59.294	38.462	1.90	0.00	32.29	3.16
2936	7701	6.587273	TCATATGTATCCATTTCCACGACAA	58.413	36.000	1.90	0.00	32.29	3.18
2937	7702	6.168270	TCATATGTATCCATTTCCACGACA	57.832	37.500	1.90	0.00	32.29	4.35
2938	7703	7.173218	ACATTCATATGTATCCATTTCCACGAC	59.827	37.037	1.90	0.00	43.12	4.34
2939	7704	7.223584	ACATTCATATGTATCCATTTCCACGA	58.776	34.615	1.90	0.00	43.12	4.35
2940	7705	7.439157	ACATTCATATGTATCCATTTCCACG	57.561	36.000	1.90	0.00	43.12	4.94
2977	7742	8.690884	CGAGGAATGGATGTATCTAGATGTATT	58.309	37.037	15.79	6.57	0.00	1.89
2978	7743	7.286546	CCGAGGAATGGATGTATCTAGATGTAT	59.713	40.741	15.79	9.11	0.00	2.29
2979	7744	6.603599	CCGAGGAATGGATGTATCTAGATGTA	59.396	42.308	15.79	4.44	0.00	2.29
2980	7745	5.420421	CCGAGGAATGGATGTATCTAGATGT	59.580	44.000	15.79	1.25	0.00	3.06
2981	7746	5.654209	TCCGAGGAATGGATGTATCTAGATG	59.346	44.000	15.79	0.00	0.00	2.90
2982	7747	5.654650	GTCCGAGGAATGGATGTATCTAGAT	59.345	44.000	10.73	10.73	37.93	1.98
2983	7748	5.010933	GTCCGAGGAATGGATGTATCTAGA	58.989	45.833	0.00	0.00	37.93	2.43
2984	7749	4.767409	TGTCCGAGGAATGGATGTATCTAG	59.233	45.833	0.00	0.00	37.93	2.43
2985	7750	4.736473	TGTCCGAGGAATGGATGTATCTA	58.264	43.478	0.00	0.00	37.93	1.98
2986	7751	3.576861	TGTCCGAGGAATGGATGTATCT	58.423	45.455	0.00	0.00	37.93	1.98
2987	7752	4.202264	ACTTGTCCGAGGAATGGATGTATC	60.202	45.833	0.00	0.00	37.93	2.24
2988	7753	3.711704	ACTTGTCCGAGGAATGGATGTAT	59.288	43.478	0.00	0.00	37.93	2.29
2989	7754	3.104512	ACTTGTCCGAGGAATGGATGTA	58.895	45.455	0.00	0.00	37.93	2.29
2990	7755	1.909302	ACTTGTCCGAGGAATGGATGT	59.091	47.619	0.00	0.00	37.93	3.06
2991	7756	2.698855	ACTTGTCCGAGGAATGGATG	57.301	50.000	0.00	0.00	37.93	3.51
2992	7757	5.368989	GAAATACTTGTCCGAGGAATGGAT	58.631	41.667	0.00	0.00	37.93	3.41
2993	7758	4.383770	GGAAATACTTGTCCGAGGAATGGA	60.384	45.833	0.00	0.00	0.00	3.41
2994	7759	3.877508	GGAAATACTTGTCCGAGGAATGG	59.122	47.826	0.00	0.00	0.00	3.16
3003	7768	1.205417	TCCGTCCGGAAATACTTGTCC	59.795	52.381	5.23	0.00	42.05	4.02
3004	7769	2.537401	CTCCGTCCGGAAATACTTGTC	58.463	52.381	5.23	0.00	44.66	3.18
3005	7770	1.206371	CCTCCGTCCGGAAATACTTGT	59.794	52.381	5.23	0.00	44.66	3.16
3006	7771	1.472728	CCCTCCGTCCGGAAATACTTG	60.473	57.143	5.23	0.00	44.66	3.16
3007	7772	0.828677	CCCTCCGTCCGGAAATACTT	59.171	55.000	5.23	0.00	44.66	2.24
3008	7773	0.032813	TCCCTCCGTCCGGAAATACT	60.033	55.000	5.23	0.00	44.66	2.12
3009	7774	0.388294	CTCCCTCCGTCCGGAAATAC	59.612	60.000	5.23	0.00	44.66	1.89
3010	7775	0.032813	ACTCCCTCCGTCCGGAAATA	60.033	55.000	5.23	0.00	44.66	1.40
3011	7776	0.032813	TACTCCCTCCGTCCGGAAAT	60.033	55.000	5.23	0.00	44.66	2.17
3012	7777	0.967380	GTACTCCCTCCGTCCGGAAA	60.967	60.000	5.23	0.00	44.66	3.13
3013	7778	1.379044	GTACTCCCTCCGTCCGGAA	60.379	63.158	5.23	0.00	44.66	4.30
3014	7779	1.929860	ATGTACTCCCTCCGTCCGGA	61.930	60.000	0.00	0.00	42.90	5.14
3015	7780	1.455217	ATGTACTCCCTCCGTCCGG	60.455	63.158	0.00	0.00	0.00	5.14
3016	7781	1.035932	ACATGTACTCCCTCCGTCCG	61.036	60.000	0.00	0.00	0.00	4.79
3017	7782	2.062971	TACATGTACTCCCTCCGTCC	57.937	55.000	0.08	0.00	0.00	4.79
3018	7783	2.223758	GCTTACATGTACTCCCTCCGTC	60.224	54.545	4.68	0.00	0.00	4.79
3019	7784	1.755380	GCTTACATGTACTCCCTCCGT	59.245	52.381	4.68	0.00	0.00	4.69
3020	7785	1.269102	CGCTTACATGTACTCCCTCCG	60.269	57.143	4.68	0.00	0.00	4.63
3021	7786	1.755380	ACGCTTACATGTACTCCCTCC	59.245	52.381	4.68	0.00	0.00	4.30
3022	7787	3.547613	CGTACGCTTACATGTACTCCCTC	60.548	52.174	4.68	0.00	38.99	4.30
3023	7788	2.357009	CGTACGCTTACATGTACTCCCT	59.643	50.000	4.68	0.00	38.99	4.20
3024	7789	2.098117	ACGTACGCTTACATGTACTCCC	59.902	50.000	16.72	0.00	38.99	4.30
3025	7790	3.411415	ACGTACGCTTACATGTACTCC	57.589	47.619	16.72	0.00	38.99	3.85
3026	7791	5.149054	ACTACGTACGCTTACATGTACTC	57.851	43.478	16.72	0.00	38.99	2.59
3027	7792	4.631377	TGACTACGTACGCTTACATGTACT	59.369	41.667	16.72	0.00	38.99	2.73
3028	7793	4.897224	TGACTACGTACGCTTACATGTAC	58.103	43.478	16.72	0.00	38.03	2.90
3029	7794	5.351189	TCTTGACTACGTACGCTTACATGTA	59.649	40.000	16.72	0.08	0.00	2.29
3030	7795	4.154737	TCTTGACTACGTACGCTTACATGT	59.845	41.667	16.72	2.69	0.00	3.21
3031	7796	4.655027	TCTTGACTACGTACGCTTACATG	58.345	43.478	16.72	12.56	0.00	3.21
3040	7805	5.888105	ACACATGGTATCTTGACTACGTAC	58.112	41.667	0.00	0.00	0.00	3.67
3154	7919	9.371136	GTAACTGATCAAATATGTCACTCAAGA	57.629	33.333	0.00	0.00	0.00	3.02
3237	8002	7.392113	AGGATATTCAACGTGAACCAAACAATA	59.608	33.333	0.00	0.00	39.45	1.90
3604	8371	2.200170	CTTTACCACTGCGCCAAGGC	62.200	60.000	4.18	0.00	37.85	4.35
3605	8372	1.875963	CTTTACCACTGCGCCAAGG	59.124	57.895	4.18	6.21	0.00	3.61
3606	8373	1.210155	GCTTTACCACTGCGCCAAG	59.790	57.895	4.18	0.00	0.00	3.61
3607	8374	1.228124	AGCTTTACCACTGCGCCAA	60.228	52.632	4.18	0.00	0.00	4.52
3608	8375	1.965930	CAGCTTTACCACTGCGCCA	60.966	57.895	4.18	0.00	0.00	5.69
3609	8376	2.870372	CAGCTTTACCACTGCGCC	59.130	61.111	4.18	0.00	0.00	6.53
3613	8380	0.607489	AGGCAGCAGCTTTACCACTG	60.607	55.000	0.00	0.00	41.70	3.66
3615	8382	0.242017	CAAGGCAGCAGCTTTACCAC	59.758	55.000	0.00	0.00	38.07	4.16
3616	8383	0.178992	ACAAGGCAGCAGCTTTACCA	60.179	50.000	0.00	0.00	38.07	3.25
3617	8384	0.242017	CACAAGGCAGCAGCTTTACC	59.758	55.000	0.00	0.00	38.07	2.85
3618	8385	1.068954	GTCACAAGGCAGCAGCTTTAC	60.069	52.381	0.00	0.00	38.07	2.01
3619	8386	1.238439	GTCACAAGGCAGCAGCTTTA	58.762	50.000	0.00	0.00	38.07	1.85
3621	8388	1.900498	GGTCACAAGGCAGCAGCTT	60.900	57.895	0.00	0.00	41.70	3.74
3622	8389	2.282040	GGTCACAAGGCAGCAGCT	60.282	61.111	0.00	0.00	41.70	4.24
3623	8390	1.975407	ATGGTCACAAGGCAGCAGC	60.975	57.895	0.00	0.00	41.10	5.25
3624	8391	0.607217	TCATGGTCACAAGGCAGCAG	60.607	55.000	0.00	0.00	0.00	4.24
3625	8392	0.607217	CTCATGGTCACAAGGCAGCA	60.607	55.000	0.00	0.00	0.00	4.41
3626	8393	1.310933	CCTCATGGTCACAAGGCAGC	61.311	60.000	0.00	0.00	0.00	5.25
3627	8394	0.037303	ACCTCATGGTCACAAGGCAG	59.963	55.000	0.00	0.00	44.78	4.85
3628	8395	2.154139	ACCTCATGGTCACAAGGCA	58.846	52.632	0.00	0.00	44.78	4.75
3639	8406	1.270839	ACTTGAACCCGTGACCTCATG	60.271	52.381	0.00	0.00	0.00	3.07
3640	8407	1.002087	GACTTGAACCCGTGACCTCAT	59.998	52.381	0.00	0.00	0.00	2.90
3642	8409	0.320508	GGACTTGAACCCGTGACCTC	60.321	60.000	0.00	0.00	0.00	3.85
3643	8410	0.763223	AGGACTTGAACCCGTGACCT	60.763	55.000	0.00	0.00	0.00	3.85
3644	8411	0.602905	CAGGACTTGAACCCGTGACC	60.603	60.000	0.00	0.00	0.00	4.02
3645	8412	0.602905	CCAGGACTTGAACCCGTGAC	60.603	60.000	0.00	0.00	0.00	3.67
3646	8413	0.761323	TCCAGGACTTGAACCCGTGA	60.761	55.000	0.00	0.00	0.00	4.35
3648	8415	0.841289	TTTCCAGGACTTGAACCCGT	59.159	50.000	0.00	0.00	0.00	5.28
3649	8416	1.235724	GTTTCCAGGACTTGAACCCG	58.764	55.000	0.00	0.00	0.00	5.28
3650	8417	2.230660	CTGTTTCCAGGACTTGAACCC	58.769	52.381	0.00	0.00	34.90	4.11
3651	8418	1.609072	GCTGTTTCCAGGACTTGAACC	59.391	52.381	0.00	0.00	39.22	3.62
3653	8420	1.494721	AGGCTGTTTCCAGGACTTGAA	59.505	47.619	0.00	0.00	39.22	2.69
3654	8421	1.072331	GAGGCTGTTTCCAGGACTTGA	59.928	52.381	0.00	0.00	39.22	3.02
3655	8422	1.072965	AGAGGCTGTTTCCAGGACTTG	59.927	52.381	0.00	0.00	39.22	3.16
3656	8423	1.439543	AGAGGCTGTTTCCAGGACTT	58.560	50.000	0.00	0.00	39.22	3.01
3657	8424	1.439543	AAGAGGCTGTTTCCAGGACT	58.560	50.000	0.00	0.00	39.22	3.85
3658	8425	2.038557	TGTAAGAGGCTGTTTCCAGGAC	59.961	50.000	0.90	0.00	39.22	3.85
3661	8428	3.685139	TCTGTAAGAGGCTGTTTCCAG	57.315	47.619	0.90	9.48	38.67	3.86
3673	8440	5.250774	AGCCTTTCCCTACATTTCTGTAAGA	59.749	40.000	0.00	0.00	44.68	2.10
3674	8441	5.355350	CAGCCTTTCCCTACATTTCTGTAAG	59.645	44.000	0.00	0.00	37.41	2.34
3675	8442	5.253330	CAGCCTTTCCCTACATTTCTGTAA	58.747	41.667	0.00	0.00	37.41	2.41
3676	8443	4.843728	CAGCCTTTCCCTACATTTCTGTA	58.156	43.478	0.00	0.00	36.79	2.74
3677	8444	3.690460	CAGCCTTTCCCTACATTTCTGT	58.310	45.455	0.00	0.00	39.49	3.41
3678	8445	2.424956	GCAGCCTTTCCCTACATTTCTG	59.575	50.000	0.00	0.00	0.00	3.02
3680	8447	1.401905	CGCAGCCTTTCCCTACATTTC	59.598	52.381	0.00	0.00	0.00	2.17
3681	8448	1.271926	ACGCAGCCTTTCCCTACATTT	60.272	47.619	0.00	0.00	0.00	2.32
3682	8449	0.328258	ACGCAGCCTTTCCCTACATT	59.672	50.000	0.00	0.00	0.00	2.71
3683	8450	1.134491	GTACGCAGCCTTTCCCTACAT	60.134	52.381	0.00	0.00	0.00	2.29
3685	8452	0.535797	AGTACGCAGCCTTTCCCTAC	59.464	55.000	0.00	0.00	0.00	3.18
3686	8453	2.148446	TAGTACGCAGCCTTTCCCTA	57.852	50.000	0.00	0.00	0.00	3.53
3687	8454	1.497161	ATAGTACGCAGCCTTTCCCT	58.503	50.000	0.00	0.00	0.00	4.20
3689	8456	3.552478	GGTCTATAGTACGCAGCCTTTCC	60.552	52.174	0.00	0.00	0.00	3.13
3690	8457	3.552478	GGGTCTATAGTACGCAGCCTTTC	60.552	52.174	0.00	0.00	0.00	2.62
3691	8458	2.364647	GGGTCTATAGTACGCAGCCTTT	59.635	50.000	0.00	0.00	0.00	3.11
3692	8459	1.962100	GGGTCTATAGTACGCAGCCTT	59.038	52.381	0.00	0.00	0.00	4.35
3693	8460	1.133575	TGGGTCTATAGTACGCAGCCT	60.134	52.381	13.98	0.00	35.18	4.58
3695	8462	3.181478	ACTTTGGGTCTATAGTACGCAGC	60.181	47.826	16.00	2.07	40.36	5.25
3697	8464	3.131577	CCACTTTGGGTCTATAGTACGCA	59.868	47.826	13.98	13.98	37.94	5.24
3698	8465	3.131755	ACCACTTTGGGTCTATAGTACGC	59.868	47.826	0.00	6.13	43.37	4.42
3699	8466	4.996788	ACCACTTTGGGTCTATAGTACG	57.003	45.455	0.00	0.00	43.37	3.67
3709	8476	2.826003	GGGTCCGACCACTTTGGGT	61.826	63.158	19.43	0.00	43.37	4.51
3711	8478	0.605589	GAAGGGTCCGACCACTTTGG	60.606	60.000	19.43	0.00	41.02	3.28
3713	8480	1.759236	GGAAGGGTCCGACCACTTT	59.241	57.895	19.43	9.96	41.02	2.66
3715	8482	2.606826	GGGAAGGGTCCGACCACT	60.607	66.667	19.43	10.80	46.04	4.00
3716	8483	3.714001	GGGGAAGGGTCCGACCAC	61.714	72.222	19.43	8.70	46.04	4.16
3723	8490	4.735599	AGGGTCCGGGGAAGGGTC	62.736	72.222	0.00	0.00	0.00	4.46
3742	8509	2.202932	ATGTAGCTCCCGCTTGCG	60.203	61.111	8.14	8.14	46.47	4.85
3743	8510	2.828128	GCATGTAGCTCCCGCTTGC	61.828	63.158	0.00	0.00	46.47	4.01
3744	8511	1.450134	TGCATGTAGCTCCCGCTTG	60.450	57.895	0.00	0.00	46.47	4.01
3751	8518	2.897350	GCCCGGTGCATGTAGCTC	60.897	66.667	11.25	0.00	45.94	4.09
3752	8519	3.402681	AGCCCGGTGCATGTAGCT	61.403	61.111	15.92	4.82	45.94	3.32
3753	8520	3.204827	CAGCCCGGTGCATGTAGC	61.205	66.667	15.92	2.56	44.83	3.58
3754	8521	3.204827	GCAGCCCGGTGCATGTAG	61.205	66.667	13.70	0.91	43.41	2.74
4251	10335	6.855667	TCCCTTCATAATCCATGACATTCAT	58.144	36.000	0.00	0.00	43.49	2.57
4453	10537	9.733556	TTAAACTGTGCCAAGAAGAATAGATTA	57.266	29.630	0.00	0.00	0.00	1.75
4583	10668	1.209019	ACAGCTCCTGTCCATGCTAAG	59.791	52.381	0.00	0.00	41.21	2.18
4613	10698	0.249120	TGAAATGATCCAGGCGACGT	59.751	50.000	0.00	0.00	0.00	4.34
4754	10839	1.415672	ATATGGTGCCACCGGGTAGG	61.416	60.000	9.78	5.86	42.58	3.18
5036	11121	1.308047	TGCATACCACAATGGCGATC	58.692	50.000	0.00	0.00	42.67	3.69
5126	11211	0.897863	TCCACCCCAATCGCCTTTTG	60.898	55.000	0.00	0.00	0.00	2.44
5204	11289	0.749649	AACACGCAAAATTGGAGCCA	59.250	45.000	0.00	0.00	0.00	4.75
5232	11317	1.216064	AGCATACCAAGCATCCTCCA	58.784	50.000	0.00	0.00	0.00	3.86
5293	11378	1.005867	CAAGGCACACCCATTGCAC	60.006	57.895	0.00	0.00	42.12	4.57
5428	11516	0.984230	TCCTCACACCATTGGAGACC	59.016	55.000	10.37	0.00	0.00	3.85
5446	11534	2.225491	TGTGCACGGTAGAATTGCTTTC	59.775	45.455	13.13	0.00	37.16	2.62
5463	11551	2.669569	ATGTCCCGTGCACTGTGC	60.670	61.111	25.15	25.15	45.29	4.57
5464	11552	0.884259	TTGATGTCCCGTGCACTGTG	60.884	55.000	16.19	2.76	0.00	3.66
5465	11553	0.179032	TTTGATGTCCCGTGCACTGT	60.179	50.000	16.19	0.00	0.00	3.55
5466	11554	1.135603	CATTTGATGTCCCGTGCACTG	60.136	52.381	16.19	8.49	0.00	3.66
5467	11555	1.167851	CATTTGATGTCCCGTGCACT	58.832	50.000	16.19	0.00	0.00	4.40
5512	11600	5.536554	ACAAACATACAGATCTGAAAGCG	57.463	39.130	29.27	13.83	0.00	4.68
5515	11603	9.208022	CAAGACTACAAACATACAGATCTGAAA	57.792	33.333	29.27	16.32	0.00	2.69
5549	11637	2.167662	CCGAACAGGCCCTAAACAATT	58.832	47.619	0.00	0.00	0.00	2.32
5665	11754	1.001406	CGAGAGAAAACTGGAGCTGGT	59.999	52.381	0.00	0.00	0.00	4.00
5826	11916	4.531659	AACGTTTCGTCAGAAGAAAAGG	57.468	40.909	21.97	15.32	39.99	3.11
5908	12001	4.883083	AGCTTGTGTTTCGTAGATCTCAA	58.117	39.130	0.00	0.00	35.04	3.02
5911	12004	3.368531	GGGAGCTTGTGTTTCGTAGATCT	60.369	47.826	0.00	0.00	35.04	2.75
5916	12009	1.414919	ACTGGGAGCTTGTGTTTCGTA	59.585	47.619	0.00	0.00	0.00	3.43
5949	12042	2.511600	CCCGGATCGAACCAGCAC	60.512	66.667	12.66	0.00	0.00	4.40
6060	12153	0.235665	CAACGCACGAGCAATTGTCT	59.764	50.000	7.40	4.71	42.27	3.41
6061	12154	1.330080	GCAACGCACGAGCAATTGTC	61.330	55.000	16.41	2.90	42.27	3.18
6066	12159	2.024022	GTTGCAACGCACGAGCAA	59.976	55.556	14.90	18.28	45.07	3.91
6067	12160	4.292208	CGTTGCAACGCACGAGCA	62.292	61.111	35.89	9.96	46.06	4.26
6076	12169	2.047002	ATGTATACCCCCGTTGCAAC	57.953	50.000	19.89	19.89	0.00	4.17
6077	12170	3.649023	AGATATGTATACCCCCGTTGCAA	59.351	43.478	0.00	0.00	0.00	4.08
6078	12171	3.244582	AGATATGTATACCCCCGTTGCA	58.755	45.455	0.00	0.00	0.00	4.08
6079	12172	3.975168	AGATATGTATACCCCCGTTGC	57.025	47.619	0.00	0.00	0.00	4.17
6080	12173	7.617225	TCATTAAGATATGTATACCCCCGTTG	58.383	38.462	0.00	0.00	0.00	4.10
6081	12174	7.801893	TCATTAAGATATGTATACCCCCGTT	57.198	36.000	0.00	0.00	0.00	4.44
6082	12175	7.989947	ATCATTAAGATATGTATACCCCCGT	57.010	36.000	0.00	0.00	34.43	5.28
6096	12189	7.642586	GCGCGGTTAAAGTTAAATCATTAAGAT	59.357	33.333	8.83	0.00	39.09	2.40
6097	12190	6.962678	GCGCGGTTAAAGTTAAATCATTAAGA	59.037	34.615	8.83	0.00	31.81	2.10
6098	12191	6.964934	AGCGCGGTTAAAGTTAAATCATTAAG	59.035	34.615	4.23	0.00	31.81	1.85
6099	12192	6.844254	AGCGCGGTTAAAGTTAAATCATTAA	58.156	32.000	4.23	0.00	0.00	1.40
6100	12193	6.425577	AGCGCGGTTAAAGTTAAATCATTA	57.574	33.333	4.23	0.00	0.00	1.90
6101	12194	5.305139	AGCGCGGTTAAAGTTAAATCATT	57.695	34.783	4.23	0.00	0.00	2.57
6102	12195	4.957759	AGCGCGGTTAAAGTTAAATCAT	57.042	36.364	4.23	0.00	0.00	2.45
6103	12196	5.859521	TTAGCGCGGTTAAAGTTAAATCA	57.140	34.783	19.09	0.00	0.00	2.57
6104	12197	6.309436	AGTTTAGCGCGGTTAAAGTTAAATC	58.691	36.000	19.09	0.97	0.00	2.17
6105	12198	6.245115	AGTTTAGCGCGGTTAAAGTTAAAT	57.755	33.333	19.09	0.00	0.00	1.40
6106	12199	5.671742	AGTTTAGCGCGGTTAAAGTTAAA	57.328	34.783	19.09	6.04	0.00	1.52
6107	12200	5.671742	AAGTTTAGCGCGGTTAAAGTTAA	57.328	34.783	19.09	0.00	32.79	2.01
6108	12201	6.966435	ATAAGTTTAGCGCGGTTAAAGTTA	57.034	33.333	25.03	25.03	37.96	2.24
6109	12202	5.868043	ATAAGTTTAGCGCGGTTAAAGTT	57.132	34.783	19.09	22.22	36.42	2.66
6110	12203	5.291858	GGTATAAGTTTAGCGCGGTTAAAGT	59.708	40.000	19.09	14.31	0.00	2.66
6111	12204	5.521372	AGGTATAAGTTTAGCGCGGTTAAAG	59.479	40.000	19.09	0.00	0.00	1.85
6112	12205	5.418676	AGGTATAAGTTTAGCGCGGTTAAA	58.581	37.500	19.09	12.13	0.00	1.52
6113	12206	5.009854	AGGTATAAGTTTAGCGCGGTTAA	57.990	39.130	19.09	11.73	0.00	2.01
6114	12207	4.654091	AGGTATAAGTTTAGCGCGGTTA	57.346	40.909	19.09	3.77	0.00	2.85
6115	12208	3.531934	AGGTATAAGTTTAGCGCGGTT	57.468	42.857	19.09	0.00	0.00	4.44
6116	12209	3.531934	AAGGTATAAGTTTAGCGCGGT	57.468	42.857	17.70	17.70	0.00	5.68
6117	12210	4.446719	CCTAAAGGTATAAGTTTAGCGCGG	59.553	45.833	8.83	0.00	35.68	6.46
6118	12211	5.284079	TCCTAAAGGTATAAGTTTAGCGCG	58.716	41.667	0.00	0.00	35.68	6.86
6119	12212	6.536224	TGTTCCTAAAGGTATAAGTTTAGCGC	59.464	38.462	0.00	0.00	35.68	5.92
6120	12213	8.548721	CATGTTCCTAAAGGTATAAGTTTAGCG	58.451	37.037	8.62	4.62	35.68	4.26
6121	12214	9.392259	ACATGTTCCTAAAGGTATAAGTTTAGC	57.608	33.333	0.00	0.00	35.68	3.09
6123	12216	9.169592	GCACATGTTCCTAAAGGTATAAGTTTA	57.830	33.333	0.00	0.00	36.34	2.01
6124	12217	7.668052	TGCACATGTTCCTAAAGGTATAAGTTT	59.332	33.333	0.00	0.00	36.34	2.66
6125	12218	7.172342	TGCACATGTTCCTAAAGGTATAAGTT	58.828	34.615	0.00	0.00	36.34	2.66
6126	12219	6.717289	TGCACATGTTCCTAAAGGTATAAGT	58.283	36.000	0.00	0.00	36.34	2.24
6127	12220	7.807977	ATGCACATGTTCCTAAAGGTATAAG	57.192	36.000	0.00	0.00	36.34	1.73
6128	12221	7.416213	GCAATGCACATGTTCCTAAAGGTATAA	60.416	37.037	0.00	0.00	36.34	0.98
6129	12222	6.039270	GCAATGCACATGTTCCTAAAGGTATA	59.961	38.462	0.00	0.00	36.34	1.47
6130	12223	5.163519	GCAATGCACATGTTCCTAAAGGTAT	60.164	40.000	0.00	0.00	36.34	2.73
6131	12224	4.157656	GCAATGCACATGTTCCTAAAGGTA	59.842	41.667	0.00	0.00	36.34	3.08
6132	12225	3.056607	GCAATGCACATGTTCCTAAAGGT	60.057	43.478	0.00	0.00	36.34	3.50
6133	12226	3.194116	AGCAATGCACATGTTCCTAAAGG	59.806	43.478	8.35	0.00	0.00	3.11
6134	12227	4.445452	AGCAATGCACATGTTCCTAAAG	57.555	40.909	8.35	0.00	0.00	1.85
6135	12228	4.764308	TGTAGCAATGCACATGTTCCTAAA	59.236	37.500	8.35	0.00	0.00	1.85
6136	12229	4.331108	TGTAGCAATGCACATGTTCCTAA	58.669	39.130	8.35	0.00	0.00	2.69
6137	12230	3.949132	TGTAGCAATGCACATGTTCCTA	58.051	40.909	8.35	0.00	0.00	2.94
6138	12231	2.794103	TGTAGCAATGCACATGTTCCT	58.206	42.857	8.35	0.00	0.00	3.36
6139	12232	3.057315	AGTTGTAGCAATGCACATGTTCC	60.057	43.478	8.35	0.00	0.00	3.62
6140	12233	4.161333	GAGTTGTAGCAATGCACATGTTC	58.839	43.478	8.35	0.00	0.00	3.18
6141	12234	3.569277	TGAGTTGTAGCAATGCACATGTT	59.431	39.130	8.35	0.00	0.00	2.71
6142	12235	3.058016	GTGAGTTGTAGCAATGCACATGT	60.058	43.478	8.35	0.00	0.00	3.21
6143	12236	3.058085	TGTGAGTTGTAGCAATGCACATG	60.058	43.478	8.35	0.00	30.73	3.21
6144	12237	3.148412	TGTGAGTTGTAGCAATGCACAT	58.852	40.909	8.35	0.00	30.73	3.21
6145	12238	2.570135	TGTGAGTTGTAGCAATGCACA	58.430	42.857	8.35	7.20	32.98	4.57
6146	12239	3.624326	TTGTGAGTTGTAGCAATGCAC	57.376	42.857	8.35	4.43	0.00	4.57
6147	12240	4.277921	TGATTTGTGAGTTGTAGCAATGCA	59.722	37.500	8.35	0.00	0.00	3.96
6148	12241	4.797471	TGATTTGTGAGTTGTAGCAATGC	58.203	39.130	0.00	0.00	0.00	3.56
6175	12268	8.986991	AGAGAAGAGTGGAAATACAGTCATATT	58.013	33.333	3.40	0.00	42.05	1.28
6176	12269	8.546083	AGAGAAGAGTGGAAATACAGTCATAT	57.454	34.615	3.40	0.00	42.05	1.78
6177	12270	7.836685	AGAGAGAAGAGTGGAAATACAGTCATA	59.163	37.037	3.40	0.00	42.05	2.15
6178	12271	6.667414	AGAGAGAAGAGTGGAAATACAGTCAT	59.333	38.462	3.40	0.00	42.05	3.06
6179	12272	6.013379	AGAGAGAAGAGTGGAAATACAGTCA	58.987	40.000	3.40	0.00	42.05	3.41
6180	12273	6.524101	AGAGAGAAGAGTGGAAATACAGTC	57.476	41.667	0.00	0.00	40.35	3.51
6181	12274	6.926630	AAGAGAGAAGAGTGGAAATACAGT	57.073	37.500	0.00	0.00	0.00	3.55
6182	12275	7.488322	CCTAAGAGAGAAGAGTGGAAATACAG	58.512	42.308	0.00	0.00	0.00	2.74
6183	12276	6.127310	GCCTAAGAGAGAAGAGTGGAAATACA	60.127	42.308	0.00	0.00	0.00	2.29
6184	12277	6.097696	AGCCTAAGAGAGAAGAGTGGAAATAC	59.902	42.308	0.00	0.00	0.00	1.89
6185	12278	6.097554	CAGCCTAAGAGAGAAGAGTGGAAATA	59.902	42.308	0.00	0.00	0.00	1.40
6186	12279	5.029474	AGCCTAAGAGAGAAGAGTGGAAAT	58.971	41.667	0.00	0.00	0.00	2.17
6187	12280	4.221703	CAGCCTAAGAGAGAAGAGTGGAAA	59.778	45.833	0.00	0.00	0.00	3.13
6188	12281	3.766591	CAGCCTAAGAGAGAAGAGTGGAA	59.233	47.826	0.00	0.00	0.00	3.53
6189	12282	3.360867	CAGCCTAAGAGAGAAGAGTGGA	58.639	50.000	0.00	0.00	0.00	4.02
6190	12283	2.430332	CCAGCCTAAGAGAGAAGAGTGG	59.570	54.545	0.00	0.00	0.00	4.00
6191	12284	3.096092	ACCAGCCTAAGAGAGAAGAGTG	58.904	50.000	0.00	0.00	0.00	3.51
6192	12285	3.245443	TGACCAGCCTAAGAGAGAAGAGT	60.245	47.826	0.00	0.00	0.00	3.24
6193	12286	3.360867	TGACCAGCCTAAGAGAGAAGAG	58.639	50.000	0.00	0.00	0.00	2.85
6194	12287	3.458044	TGACCAGCCTAAGAGAGAAGA	57.542	47.619	0.00	0.00	0.00	2.87
6195	12288	4.892934	ACTATGACCAGCCTAAGAGAGAAG	59.107	45.833	0.00	0.00	0.00	2.85
6196	12289	4.646945	CACTATGACCAGCCTAAGAGAGAA	59.353	45.833	0.00	0.00	0.00	2.87
6197	12290	4.079730	TCACTATGACCAGCCTAAGAGAGA	60.080	45.833	0.00	0.00	0.00	3.10
6198	12291	4.211125	TCACTATGACCAGCCTAAGAGAG	58.789	47.826	0.00	0.00	0.00	3.20
6199	12292	4.211125	CTCACTATGACCAGCCTAAGAGA	58.789	47.826	0.00	0.00	0.00	3.10
6200	12293	3.320541	CCTCACTATGACCAGCCTAAGAG	59.679	52.174	0.00	0.00	0.00	2.85
6201	12294	3.052869	TCCTCACTATGACCAGCCTAAGA	60.053	47.826	0.00	0.00	0.00	2.10
6202	12295	3.300388	TCCTCACTATGACCAGCCTAAG	58.700	50.000	0.00	0.00	0.00	2.18
6203	12296	3.300388	CTCCTCACTATGACCAGCCTAA	58.700	50.000	0.00	0.00	0.00	2.69
6204	12297	2.245028	ACTCCTCACTATGACCAGCCTA	59.755	50.000	0.00	0.00	0.00	3.93
6205	12298	1.007721	ACTCCTCACTATGACCAGCCT	59.992	52.381	0.00	0.00	0.00	4.58
6206	12299	1.490574	ACTCCTCACTATGACCAGCC	58.509	55.000	0.00	0.00	0.00	4.85
6207	12300	3.702045	AGTTACTCCTCACTATGACCAGC	59.298	47.826	0.00	0.00	0.00	4.85
6208	12301	5.923733	AAGTTACTCCTCACTATGACCAG	57.076	43.478	0.00	0.00	0.00	4.00
6209	12302	8.280084	AGTATAAGTTACTCCTCACTATGACCA	58.720	37.037	0.00	0.00	0.00	4.02
6210	12303	8.694581	AGTATAAGTTACTCCTCACTATGACC	57.305	38.462	0.00	0.00	0.00	4.02
6215	12308	9.829507	GACACTAGTATAAGTTACTCCTCACTA	57.170	37.037	0.00	0.00	0.00	2.74
6216	12309	8.327271	TGACACTAGTATAAGTTACTCCTCACT	58.673	37.037	0.00	0.00	0.00	3.41
6217	12310	8.503458	TGACACTAGTATAAGTTACTCCTCAC	57.497	38.462	0.00	0.00	0.00	3.51
6218	12311	9.121658	CATGACACTAGTATAAGTTACTCCTCA	57.878	37.037	0.00	0.00	0.00	3.86
6219	12312	8.077386	GCATGACACTAGTATAAGTTACTCCTC	58.923	40.741	0.00	0.00	0.00	3.71
6220	12313	7.560262	TGCATGACACTAGTATAAGTTACTCCT	59.440	37.037	0.00	0.00	0.00	3.69
6221	12314	7.713750	TGCATGACACTAGTATAAGTTACTCC	58.286	38.462	0.00	0.00	0.00	3.85
6240	12333	7.588497	ACTTAGACTAGTGTCATATGCATGA	57.412	36.000	10.16	0.00	45.20	3.07
6241	12334	9.404348	CTAACTTAGACTAGTGTCATATGCATG	57.596	37.037	10.16	0.00	45.20	4.06
6242	12335	9.137459	ACTAACTTAGACTAGTGTCATATGCAT	57.863	33.333	3.79	3.79	45.20	3.96
6243	12336	8.521170	ACTAACTTAGACTAGTGTCATATGCA	57.479	34.615	0.00	0.00	45.20	3.96
6244	12337	9.881529	GTACTAACTTAGACTAGTGTCATATGC	57.118	37.037	0.00	0.00	45.20	3.14
6249	12342	9.565090	TGAAAGTACTAACTTAGACTAGTGTCA	57.435	33.333	0.00	0.00	45.37	3.58
6256	12349	9.021807	TGCACTATGAAAGTACTAACTTAGACT	57.978	33.333	19.30	0.13	45.37	3.24
6257	12350	9.635520	TTGCACTATGAAAGTACTAACTTAGAC	57.364	33.333	19.30	14.13	45.37	2.59
6260	12353	9.991906	ACTTTGCACTATGAAAGTACTAACTTA	57.008	29.630	0.00	0.00	45.37	2.24
6262	12355	9.991906	TTACTTTGCACTATGAAAGTACTAACT	57.008	29.630	6.03	0.00	41.90	2.24
6264	12357	9.767228	TGTTACTTTGCACTATGAAAGTACTAA	57.233	29.630	6.03	0.00	41.90	2.24
6265	12358	9.938280	ATGTTACTTTGCACTATGAAAGTACTA	57.062	29.630	6.03	0.60	41.90	1.82
6266	12359	8.848474	ATGTTACTTTGCACTATGAAAGTACT	57.152	30.769	6.03	0.00	41.90	2.73

Based at the University of Bristol with support from BBSRC.

AutoCloner maintained by Alex Coulton.