Multiple sequence alignment - TraesCS2A01G217900

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS2A01G217900 chr2A 100.000 3089 0 0 1 3089 204992325 204995413 0.000000e+00 5705.0
1 TraesCS2A01G217900 chr2A 90.541 74 6 1 237 309 773024330 773024257 2.540000e-16 97.1
2 TraesCS2A01G217900 chr2A 79.339 121 16 7 1052 1168 204930132 204930247 3.300000e-10 76.8
3 TraesCS2A01G217900 chr2A 95.745 47 2 0 2242 2288 614704880 614704834 3.300000e-10 76.8
4 TraesCS2A01G217900 chr2D 91.582 1960 96 30 226 2136 190436502 190438441 0.000000e+00 2641.0
5 TraesCS2A01G217900 chr2D 91.100 618 37 6 2408 3009 184108329 184107714 0.000000e+00 821.0
6 TraesCS2A01G217900 chr2D 80.165 121 15 7 1052 1168 190369917 190370032 7.100000e-12 82.4
7 TraesCS2A01G217900 chr2B 93.973 1543 59 8 593 2102 247559730 247561271 0.000000e+00 2303.0
8 TraesCS2A01G217900 chr2B 81.911 293 29 8 268 560 247559284 247559552 3.100000e-55 226.0
9 TraesCS2A01G217900 chr2B 87.500 128 13 1 2 129 773091127 773091003 8.930000e-31 145.0
10 TraesCS2A01G217900 chr2B 87.912 91 11 0 219 309 752945027 752945117 1.170000e-19 108.0
11 TraesCS2A01G217900 chr2B 79.339 121 16 7 1052 1168 247517958 247518073 3.300000e-10 76.8
12 TraesCS2A01G217900 chr6B 89.211 621 39 7 2405 3009 460719765 460720373 0.000000e+00 750.0
13 TraesCS2A01G217900 chr6B 81.111 270 31 10 2676 2938 46419887 46419631 6.760000e-47 198.0
14 TraesCS2A01G217900 chr6B 93.617 47 3 0 2242 2288 683261685 683261639 1.540000e-08 71.3
15 TraesCS2A01G217900 chr7A 85.439 570 57 9 2408 2961 396495692 396495133 1.240000e-158 569.0
16 TraesCS2A01G217900 chr7A 80.240 167 18 7 2242 2404 396495895 396495740 9.050000e-21 111.0
17 TraesCS2A01G217900 chr7B 87.948 307 23 5 2436 2729 577679592 577679897 1.760000e-92 350.0
18 TraesCS2A01G217900 chr7B 86.957 138 8 4 2269 2405 577679354 577679482 2.480000e-31 147.0
19 TraesCS2A01G217900 chr7B 90.476 84 8 0 226 309 220875557 220875640 9.050000e-21 111.0
20 TraesCS2A01G217900 chr7B 95.745 47 2 0 581 627 271166366 271166412 3.300000e-10 76.8
21 TraesCS2A01G217900 chr7B 92.157 51 3 1 2244 2294 442969154 442969105 1.540000e-08 71.3
22 TraesCS2A01G217900 chr3A 87.565 193 23 1 2 193 731845825 731845633 4.010000e-54 222.0
23 TraesCS2A01G217900 chr3A 89.796 98 10 0 1777 1874 661841806 661841709 3.230000e-25 126.0
24 TraesCS2A01G217900 chr3A 89.744 78 7 1 1515 1591 661841890 661841813 7.050000e-17 99.0
25 TraesCS2A01G217900 chr1A 86.486 148 12 3 2819 2960 547407834 547407689 4.120000e-34 156.0
26 TraesCS2A01G217900 chr1D 93.182 88 5 1 222 309 246954958 246954872 8.990000e-26 128.0
27 TraesCS2A01G217900 chr5B 89.130 92 10 0 226 317 644596602 644596693 7.000000e-22 115.0
28 TraesCS2A01G217900 chrUn 91.463 82 5 1 226 307 255062663 255062742 9.050000e-21 111.0
29 TraesCS2A01G217900 chrUn 91.463 82 5 1 226 307 269239669 269239748 9.050000e-21 111.0
30 TraesCS2A01G217900 chr3D 88.636 88 10 0 225 312 348132865 348132778 1.170000e-19 108.0
31 TraesCS2A01G217900 chr3B 87.912 91 11 0 226 316 192959834 192959924 1.170000e-19 108.0
32 TraesCS2A01G217900 chr4B 92.958 71 5 0 2238 2308 511810592 511810662 1.520000e-18 104.0
33 TraesCS2A01G217900 chr4B 93.617 47 3 0 2242 2288 9848935 9848889 1.540000e-08 71.3
34 TraesCS2A01G217900 chr4B 100.000 29 0 0 2242 2270 562578090 562578118 2.000000e-03 54.7
35 TraesCS2A01G217900 chr5D 76.875 160 31 6 1035 1193 350703977 350704131 5.490000e-13 86.1
36 TraesCS2A01G217900 chr5D 85.000 80 6 5 1051 1128 350676207 350676282 3.300000e-10 76.8
37 TraesCS2A01G217900 chr5A 76.875 160 31 6 1035 1193 451248292 451248446 5.490000e-13 86.1
38 TraesCS2A01G217900 chr5A 85.000 80 6 5 1051 1128 451138377 451138452 3.300000e-10 76.8


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS2A01G217900 chr2A 204992325 204995413 3088 False 5705.0 5705 100.0000 1 3089 1 chr2A.!!$F2 3088
1 TraesCS2A01G217900 chr2D 190436502 190438441 1939 False 2641.0 2641 91.5820 226 2136 1 chr2D.!!$F2 1910
2 TraesCS2A01G217900 chr2D 184107714 184108329 615 True 821.0 821 91.1000 2408 3009 1 chr2D.!!$R1 601
3 TraesCS2A01G217900 chr2B 247559284 247561271 1987 False 1264.5 2303 87.9420 268 2102 2 chr2B.!!$F3 1834
4 TraesCS2A01G217900 chr6B 460719765 460720373 608 False 750.0 750 89.2110 2405 3009 1 chr6B.!!$F1 604
5 TraesCS2A01G217900 chr7A 396495133 396495895 762 True 340.0 569 82.8395 2242 2961 2 chr7A.!!$R1 719
6 TraesCS2A01G217900 chr7B 577679354 577679897 543 False 248.5 350 87.4525 2269 2729 2 chr7B.!!$F3 460

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
86 87 0.031994 GGAAAAAGCCAGCTTCGCAA 59.968 50.0 5.17 0.0 34.84 4.85 F
569 587 0.033366 AAACGGATTTGCCAAGTGCC 59.967 50.0 0.00 0.0 40.16 5.01 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1887 2091 3.666253 TCCGCGCTGTCGAAGTGA 61.666 61.111 5.56 0.0 38.83 3.41 R
2147 2351 0.179076 TAGCCGTCACCTCGTCGATA 60.179 55.000 0.00 0.0 0.00 2.92 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
18 19 1.517832 AGACTCACATAGCGGTGGC 59.482 57.895 0.00 0.00 39.27 5.01
19 20 1.218047 GACTCACATAGCGGTGGCA 59.782 57.895 0.00 0.00 43.41 4.92
20 21 0.807667 GACTCACATAGCGGTGGCAG 60.808 60.000 0.00 1.35 43.41 4.85
21 22 2.125147 TCACATAGCGGTGGCAGC 60.125 61.111 6.62 6.62 43.41 5.25
23 24 2.124983 ACATAGCGGTGGCAGCTG 60.125 61.111 15.48 10.11 45.60 4.24
24 25 2.898840 CATAGCGGTGGCAGCTGG 60.899 66.667 17.12 0.00 45.60 4.85
25 26 3.402681 ATAGCGGTGGCAGCTGGT 61.403 61.111 17.12 15.21 45.60 4.00
26 27 2.971598 ATAGCGGTGGCAGCTGGTT 61.972 57.895 17.12 0.00 45.60 3.67
27 28 3.899981 TAGCGGTGGCAGCTGGTTG 62.900 63.158 17.12 0.00 45.60 3.77
29 30 2.031919 CGGTGGCAGCTGGTTGTA 59.968 61.111 17.12 0.00 0.00 2.41
30 31 1.599518 CGGTGGCAGCTGGTTGTAA 60.600 57.895 17.12 0.00 0.00 2.41
31 32 0.960364 CGGTGGCAGCTGGTTGTAAT 60.960 55.000 17.12 0.00 0.00 1.89
32 33 1.677518 CGGTGGCAGCTGGTTGTAATA 60.678 52.381 17.12 0.00 0.00 0.98
33 34 2.654863 GGTGGCAGCTGGTTGTAATAT 58.345 47.619 17.12 0.00 0.00 1.28
34 35 2.358898 GGTGGCAGCTGGTTGTAATATG 59.641 50.000 17.12 0.00 0.00 1.78
35 36 3.016736 GTGGCAGCTGGTTGTAATATGT 58.983 45.455 17.12 0.00 0.00 2.29
36 37 3.443681 GTGGCAGCTGGTTGTAATATGTT 59.556 43.478 17.12 0.00 0.00 2.71
37 38 4.082245 GTGGCAGCTGGTTGTAATATGTTT 60.082 41.667 17.12 0.00 0.00 2.83
38 39 4.157656 TGGCAGCTGGTTGTAATATGTTTC 59.842 41.667 17.12 0.00 0.00 2.78
39 40 4.157656 GGCAGCTGGTTGTAATATGTTTCA 59.842 41.667 17.12 0.00 0.00 2.69
40 41 5.336372 GGCAGCTGGTTGTAATATGTTTCAA 60.336 40.000 17.12 0.00 0.00 2.69
41 42 5.572896 GCAGCTGGTTGTAATATGTTTCAAC 59.427 40.000 17.12 13.83 41.87 3.18
42 43 6.570378 GCAGCTGGTTGTAATATGTTTCAACT 60.570 38.462 17.12 2.75 42.10 3.16
43 44 7.023575 CAGCTGGTTGTAATATGTTTCAACTC 58.976 38.462 19.08 12.35 42.10 3.01
44 45 6.151144 AGCTGGTTGTAATATGTTTCAACTCC 59.849 38.462 19.08 8.64 42.10 3.85
45 46 6.625081 GCTGGTTGTAATATGTTTCAACTCCC 60.625 42.308 19.08 8.10 42.10 4.30
46 47 5.413213 TGGTTGTAATATGTTTCAACTCCCG 59.587 40.000 19.08 0.00 42.10 5.14
47 48 5.329493 GTTGTAATATGTTTCAACTCCCGC 58.671 41.667 14.61 0.00 40.42 6.13
48 49 4.839121 TGTAATATGTTTCAACTCCCGCT 58.161 39.130 0.00 0.00 0.00 5.52
49 50 5.250200 TGTAATATGTTTCAACTCCCGCTT 58.750 37.500 0.00 0.00 0.00 4.68
50 51 4.965119 AATATGTTTCAACTCCCGCTTC 57.035 40.909 0.00 0.00 0.00 3.86
51 52 2.568623 ATGTTTCAACTCCCGCTTCT 57.431 45.000 0.00 0.00 0.00 2.85
52 53 2.341846 TGTTTCAACTCCCGCTTCTT 57.658 45.000 0.00 0.00 0.00 2.52
53 54 2.218603 TGTTTCAACTCCCGCTTCTTC 58.781 47.619 0.00 0.00 0.00 2.87
54 55 1.535896 GTTTCAACTCCCGCTTCTTCC 59.464 52.381 0.00 0.00 0.00 3.46
55 56 0.320421 TTCAACTCCCGCTTCTTCCG 60.320 55.000 0.00 0.00 0.00 4.30
56 57 1.004918 CAACTCCCGCTTCTTCCGT 60.005 57.895 0.00 0.00 0.00 4.69
57 58 0.602905 CAACTCCCGCTTCTTCCGTT 60.603 55.000 0.00 0.00 0.00 4.44
58 59 0.108019 AACTCCCGCTTCTTCCGTTT 59.892 50.000 0.00 0.00 0.00 3.60
59 60 0.108019 ACTCCCGCTTCTTCCGTTTT 59.892 50.000 0.00 0.00 0.00 2.43
60 61 0.796927 CTCCCGCTTCTTCCGTTTTC 59.203 55.000 0.00 0.00 0.00 2.29
61 62 0.107081 TCCCGCTTCTTCCGTTTTCA 59.893 50.000 0.00 0.00 0.00 2.69
62 63 0.517316 CCCGCTTCTTCCGTTTTCAG 59.483 55.000 0.00 0.00 0.00 3.02
63 64 1.508632 CCGCTTCTTCCGTTTTCAGA 58.491 50.000 0.00 0.00 0.00 3.27
64 65 1.461127 CCGCTTCTTCCGTTTTCAGAG 59.539 52.381 0.00 0.00 0.00 3.35
65 66 1.136224 CGCTTCTTCCGTTTTCAGAGC 60.136 52.381 0.00 0.00 0.00 4.09
66 67 2.147150 GCTTCTTCCGTTTTCAGAGCT 58.853 47.619 0.00 0.00 0.00 4.09
67 68 2.096019 GCTTCTTCCGTTTTCAGAGCTG 60.096 50.000 0.00 0.00 0.00 4.24
68 69 2.169832 TCTTCCGTTTTCAGAGCTGG 57.830 50.000 0.00 0.00 0.00 4.85
69 70 1.691976 TCTTCCGTTTTCAGAGCTGGA 59.308 47.619 0.00 0.00 0.00 3.86
70 71 2.104111 TCTTCCGTTTTCAGAGCTGGAA 59.896 45.455 0.00 0.00 34.54 3.53
71 72 2.631160 TCCGTTTTCAGAGCTGGAAA 57.369 45.000 0.00 0.00 35.81 3.13
72 73 2.925724 TCCGTTTTCAGAGCTGGAAAA 58.074 42.857 15.38 15.38 39.55 2.29
73 74 3.283751 TCCGTTTTCAGAGCTGGAAAAA 58.716 40.909 19.12 8.08 43.52 1.94
74 75 3.315191 TCCGTTTTCAGAGCTGGAAAAAG 59.685 43.478 19.12 19.56 43.52 2.27
75 76 3.045688 CGTTTTCAGAGCTGGAAAAAGC 58.954 45.455 19.12 10.60 43.52 3.51
76 77 3.384668 GTTTTCAGAGCTGGAAAAAGCC 58.615 45.455 19.12 8.25 43.52 4.35
77 78 2.363306 TTCAGAGCTGGAAAAAGCCA 57.637 45.000 0.00 0.00 44.68 4.75
84 85 1.659794 TGGAAAAAGCCAGCTTCGC 59.340 52.632 5.17 0.00 34.84 4.70
85 86 1.106351 TGGAAAAAGCCAGCTTCGCA 61.106 50.000 5.17 0.00 34.84 5.10
86 87 0.031994 GGAAAAAGCCAGCTTCGCAA 59.968 50.000 5.17 0.00 34.84 4.85
87 88 1.131771 GAAAAAGCCAGCTTCGCAAC 58.868 50.000 5.17 0.00 34.84 4.17
88 89 0.746659 AAAAAGCCAGCTTCGCAACT 59.253 45.000 5.17 0.00 34.84 3.16
89 90 0.312102 AAAAGCCAGCTTCGCAACTC 59.688 50.000 5.17 0.00 34.84 3.01
90 91 1.518903 AAAGCCAGCTTCGCAACTCC 61.519 55.000 5.17 0.00 34.84 3.85
91 92 2.359230 GCCAGCTTCGCAACTCCT 60.359 61.111 0.00 0.00 0.00 3.69
92 93 2.394563 GCCAGCTTCGCAACTCCTC 61.395 63.158 0.00 0.00 0.00 3.71
93 94 1.743252 CCAGCTTCGCAACTCCTCC 60.743 63.158 0.00 0.00 0.00 4.30
94 95 2.097038 CAGCTTCGCAACTCCTCCG 61.097 63.158 0.00 0.00 0.00 4.63
95 96 2.048127 GCTTCGCAACTCCTCCGT 60.048 61.111 0.00 0.00 0.00 4.69
96 97 1.214589 GCTTCGCAACTCCTCCGTA 59.785 57.895 0.00 0.00 0.00 4.02
97 98 0.179108 GCTTCGCAACTCCTCCGTAT 60.179 55.000 0.00 0.00 0.00 3.06
98 99 1.739371 GCTTCGCAACTCCTCCGTATT 60.739 52.381 0.00 0.00 0.00 1.89
99 100 2.618053 CTTCGCAACTCCTCCGTATTT 58.382 47.619 0.00 0.00 0.00 1.40
100 101 3.777478 CTTCGCAACTCCTCCGTATTTA 58.223 45.455 0.00 0.00 0.00 1.40
101 102 3.155093 TCGCAACTCCTCCGTATTTAC 57.845 47.619 0.00 0.00 0.00 2.01
102 103 2.492881 TCGCAACTCCTCCGTATTTACA 59.507 45.455 0.00 0.00 0.00 2.41
103 104 2.601763 CGCAACTCCTCCGTATTTACAC 59.398 50.000 0.00 0.00 0.00 2.90
104 105 3.675228 CGCAACTCCTCCGTATTTACACT 60.675 47.826 0.00 0.00 0.00 3.55
105 106 4.439153 CGCAACTCCTCCGTATTTACACTA 60.439 45.833 0.00 0.00 0.00 2.74
106 107 4.802563 GCAACTCCTCCGTATTTACACTAC 59.197 45.833 0.00 0.00 0.00 2.73
107 108 4.889832 ACTCCTCCGTATTTACACTACG 57.110 45.455 0.00 0.00 41.17 3.51
108 109 3.065925 ACTCCTCCGTATTTACACTACGC 59.934 47.826 0.00 0.00 40.39 4.42
109 110 2.032054 TCCTCCGTATTTACACTACGCG 59.968 50.000 3.53 3.53 40.39 6.01
110 111 2.378806 CTCCGTATTTACACTACGCGG 58.621 52.381 12.47 0.00 40.39 6.46
111 112 1.065401 TCCGTATTTACACTACGCGGG 59.935 52.381 12.47 5.29 40.39 6.13
112 113 0.848305 CGTATTTACACTACGCGGGC 59.152 55.000 12.47 0.00 35.99 6.13
113 114 1.798446 CGTATTTACACTACGCGGGCA 60.798 52.381 12.47 0.00 35.99 5.36
114 115 1.856597 GTATTTACACTACGCGGGCAG 59.143 52.381 12.47 7.11 0.00 4.85
115 116 1.087771 ATTTACACTACGCGGGCAGC 61.088 55.000 12.47 0.00 43.95 5.25
116 117 2.162338 TTTACACTACGCGGGCAGCT 62.162 55.000 12.47 0.00 45.59 4.24
117 118 2.829043 TTACACTACGCGGGCAGCTG 62.829 60.000 12.47 10.11 45.59 4.24
125 126 4.399395 CGGGCAGCTGGCTTCTCA 62.399 66.667 35.64 0.00 44.01 3.27
126 127 2.034687 GGGCAGCTGGCTTCTCAA 59.965 61.111 35.64 0.00 44.01 3.02
127 128 1.379576 GGGCAGCTGGCTTCTCAAT 60.380 57.895 35.64 0.00 44.01 2.57
128 129 0.969409 GGGCAGCTGGCTTCTCAATT 60.969 55.000 35.64 0.00 44.01 2.32
129 130 0.455005 GGCAGCTGGCTTCTCAATTC 59.545 55.000 31.40 1.90 44.01 2.17
130 131 0.455005 GCAGCTGGCTTCTCAATTCC 59.545 55.000 17.12 0.00 40.25 3.01
131 132 0.731417 CAGCTGGCTTCTCAATTCCG 59.269 55.000 5.57 0.00 0.00 4.30
132 133 0.326264 AGCTGGCTTCTCAATTCCGT 59.674 50.000 0.00 0.00 0.00 4.69
133 134 1.555075 AGCTGGCTTCTCAATTCCGTA 59.445 47.619 0.00 0.00 0.00 4.02
134 135 1.666189 GCTGGCTTCTCAATTCCGTAC 59.334 52.381 0.00 0.00 0.00 3.67
135 136 2.678190 GCTGGCTTCTCAATTCCGTACT 60.678 50.000 0.00 0.00 0.00 2.73
136 137 3.190874 CTGGCTTCTCAATTCCGTACTC 58.809 50.000 0.00 0.00 0.00 2.59
137 138 2.093658 TGGCTTCTCAATTCCGTACTCC 60.094 50.000 0.00 0.00 0.00 3.85
138 139 2.194271 GCTTCTCAATTCCGTACTCCG 58.806 52.381 0.00 0.00 0.00 4.63
139 140 2.194271 CTTCTCAATTCCGTACTCCGC 58.806 52.381 0.00 0.00 34.38 5.54
140 141 0.099968 TCTCAATTCCGTACTCCGCG 59.900 55.000 0.00 0.00 34.38 6.46
155 156 2.876645 GCGGAGTCAGAGCGTTCG 60.877 66.667 0.00 0.00 0.00 3.95
156 157 2.202492 CGGAGTCAGAGCGTTCGG 60.202 66.667 0.00 0.00 0.00 4.30
157 158 2.507324 GGAGTCAGAGCGTTCGGC 60.507 66.667 0.00 0.00 44.05 5.54
166 167 3.491652 GCGTTCGGCTCAGCTTCC 61.492 66.667 0.00 0.00 39.11 3.46
167 168 2.048222 CGTTCGGCTCAGCTTCCA 60.048 61.111 0.00 0.00 0.00 3.53
168 169 1.448540 CGTTCGGCTCAGCTTCCAT 60.449 57.895 0.00 0.00 0.00 3.41
169 170 1.424493 CGTTCGGCTCAGCTTCCATC 61.424 60.000 0.00 0.00 0.00 3.51
170 171 0.107945 GTTCGGCTCAGCTTCCATCT 60.108 55.000 0.00 0.00 0.00 2.90
171 172 0.615331 TTCGGCTCAGCTTCCATCTT 59.385 50.000 0.00 0.00 0.00 2.40
172 173 0.107993 TCGGCTCAGCTTCCATCTTG 60.108 55.000 0.00 0.00 0.00 3.02
173 174 1.094073 CGGCTCAGCTTCCATCTTGG 61.094 60.000 0.00 0.00 39.43 3.61
174 175 0.254178 GGCTCAGCTTCCATCTTGGA 59.746 55.000 0.00 0.00 46.61 3.53
184 185 3.988976 TCCATCTTGGAGTTGGAGAAG 57.011 47.619 4.11 0.00 42.67 2.85
185 186 2.026822 TCCATCTTGGAGTTGGAGAAGC 60.027 50.000 4.11 0.00 42.67 3.86
186 187 2.026449 CCATCTTGGAGTTGGAGAAGCT 60.026 50.000 0.00 0.00 40.96 3.74
187 188 2.847327 TCTTGGAGTTGGAGAAGCTG 57.153 50.000 0.00 0.00 0.00 4.24
188 189 1.349026 TCTTGGAGTTGGAGAAGCTGG 59.651 52.381 0.00 0.00 0.00 4.85
189 190 0.250901 TTGGAGTTGGAGAAGCTGGC 60.251 55.000 0.00 0.00 0.00 4.85
190 191 1.130054 TGGAGTTGGAGAAGCTGGCT 61.130 55.000 0.00 0.00 0.00 4.75
191 192 0.676151 GGAGTTGGAGAAGCTGGCTG 60.676 60.000 0.00 0.00 0.00 4.85
192 193 1.303155 AGTTGGAGAAGCTGGCTGC 60.303 57.895 8.47 8.47 43.29 5.25
207 208 4.617520 TGCTGGAGCGTTGCCGAA 62.618 61.111 0.00 0.00 45.83 4.30
208 209 3.127533 GCTGGAGCGTTGCCGAAT 61.128 61.111 0.00 0.00 35.63 3.34
209 210 1.813753 GCTGGAGCGTTGCCGAATA 60.814 57.895 0.00 0.00 35.63 1.75
210 211 2.006772 CTGGAGCGTTGCCGAATAC 58.993 57.895 0.00 0.00 35.63 1.89
211 212 1.752501 CTGGAGCGTTGCCGAATACG 61.753 60.000 0.00 0.00 40.55 3.06
215 216 2.510691 CGTTGCCGAATACGCCCT 60.511 61.111 0.00 0.00 38.29 5.19
216 217 1.227031 CGTTGCCGAATACGCCCTA 60.227 57.895 0.00 0.00 38.29 3.53
217 218 1.485032 CGTTGCCGAATACGCCCTAC 61.485 60.000 0.00 0.00 38.29 3.18
218 219 0.460635 GTTGCCGAATACGCCCTACA 60.461 55.000 0.00 0.00 38.29 2.74
219 220 0.460635 TTGCCGAATACGCCCTACAC 60.461 55.000 0.00 0.00 38.29 2.90
220 221 1.593479 GCCGAATACGCCCTACACC 60.593 63.158 0.00 0.00 38.29 4.16
221 222 2.024590 GCCGAATACGCCCTACACCT 62.025 60.000 0.00 0.00 38.29 4.00
222 223 0.462789 CCGAATACGCCCTACACCTT 59.537 55.000 0.00 0.00 38.29 3.50
223 224 1.682854 CCGAATACGCCCTACACCTTA 59.317 52.381 0.00 0.00 38.29 2.69
224 225 2.101249 CCGAATACGCCCTACACCTTAA 59.899 50.000 0.00 0.00 38.29 1.85
235 236 6.205270 CGCCCTACACCTTAAAGTTCTTTTTA 59.795 38.462 3.12 0.00 0.00 1.52
242 243 7.713507 ACACCTTAAAGTTCTTTTTAAATGGGC 59.286 33.333 3.12 0.00 33.48 5.36
243 244 7.931407 CACCTTAAAGTTCTTTTTAAATGGGCT 59.069 33.333 3.12 0.00 33.48 5.19
244 245 8.491134 ACCTTAAAGTTCTTTTTAAATGGGCTT 58.509 29.630 3.12 0.00 33.48 4.35
246 247 9.764363 CTTAAAGTTCTTTTTAAATGGGCTTCT 57.236 29.630 3.12 0.00 33.48 2.85
247 248 9.541143 TTAAAGTTCTTTTTAAATGGGCTTCTG 57.459 29.630 3.12 0.00 31.50 3.02
251 252 8.264347 AGTTCTTTTTAAATGGGCTTCTGAAAA 58.736 29.630 0.00 0.00 0.00 2.29
302 303 9.026121 GTAGTCTATCATTCCTATTAAGCCAGA 57.974 37.037 0.00 0.00 0.00 3.86
309 310 6.384015 TCATTCCTATTAAGCCAGACTCTCAA 59.616 38.462 0.00 0.00 0.00 3.02
317 318 0.764890 CCAGACTCTCAAACCACCCA 59.235 55.000 0.00 0.00 0.00 4.51
373 374 2.060050 TGCTTTTGAGAAACCCGGAA 57.940 45.000 0.73 0.00 0.00 4.30
389 390 2.504367 CGGAAAACAAGTCCACATCCT 58.496 47.619 0.00 0.00 34.56 3.24
399 400 4.213564 AGTCCACATCCTGAATCAAGAC 57.786 45.455 0.00 0.00 0.00 3.01
403 404 2.094894 CACATCCTGAATCAAGACGCAC 59.905 50.000 0.00 0.00 0.00 5.34
432 433 9.932207 AAGATTATGAATTTTCTGCACATGAAA 57.068 25.926 0.00 0.00 0.00 2.69
440 441 6.638096 TTTTCTGCACATGAAAGAGAATCA 57.362 33.333 0.00 0.00 37.82 2.57
449 467 4.128925 TGAAAGAGAATCACCGAGATGG 57.871 45.455 0.00 0.00 46.41 3.51
460 478 0.460987 CCGAGATGGTCTTGTGGAGC 60.461 60.000 0.00 0.00 42.27 4.70
524 542 5.814188 TGAATTGTGCACTTTAAATGTTGCA 59.186 32.000 19.41 12.75 0.00 4.08
527 545 3.493877 TGTGCACTTTAAATGTTGCATGC 59.506 39.130 19.41 11.82 34.72 4.06
528 546 3.065655 TGCACTTTAAATGTTGCATGCC 58.934 40.909 16.68 0.28 0.00 4.40
535 553 0.538118 AATGTTGCATGCCCATGACC 59.462 50.000 16.68 0.00 41.20 4.02
567 585 2.064573 GGAAACGGATTTGCCAAGTG 57.935 50.000 0.00 0.00 35.94 3.16
568 586 1.418373 GAAACGGATTTGCCAAGTGC 58.582 50.000 0.00 0.00 41.77 4.40
569 587 0.033366 AAACGGATTTGCCAAGTGCC 59.967 50.000 0.00 0.00 40.16 5.01
570 588 1.112315 AACGGATTTGCCAAGTGCCA 61.112 50.000 0.00 0.00 40.16 4.92
571 589 1.112315 ACGGATTTGCCAAGTGCCAA 61.112 50.000 0.00 0.00 40.16 4.52
572 590 0.388907 CGGATTTGCCAAGTGCCAAG 60.389 55.000 0.00 0.00 40.16 3.61
573 591 0.681175 GGATTTGCCAAGTGCCAAGT 59.319 50.000 0.00 0.00 40.16 3.16
574 592 1.892474 GGATTTGCCAAGTGCCAAGTA 59.108 47.619 0.00 0.00 40.16 2.24
575 593 2.094545 GGATTTGCCAAGTGCCAAGTAG 60.095 50.000 0.00 0.00 40.16 2.57
714 890 8.827177 AACAGTTCTCATTCGTCAAGTATAAA 57.173 30.769 0.00 0.00 0.00 1.40
723 899 9.825109 TCATTCGTCAAGTATAAATGTATCCAA 57.175 29.630 0.00 0.00 0.00 3.53
813 1014 0.676151 CCTCTGGTTGCTCCTCTTGC 60.676 60.000 0.80 0.00 37.07 4.01
1005 1209 1.219124 AGCGACGGTGCTGATGAAT 59.781 52.632 0.00 0.00 45.28 2.57
1056 1260 3.471244 CTCGTCGACCTCGCCATCC 62.471 68.421 10.58 0.00 39.60 3.51
1057 1261 3.518998 CGTCGACCTCGCCATCCT 61.519 66.667 10.58 0.00 39.60 3.24
1290 1494 3.315749 GCTGTGCGTACTACTTCTCCTAT 59.684 47.826 4.97 0.00 0.00 2.57
1302 1506 2.758327 TCCTATGGCGACGGCACT 60.758 61.111 27.40 17.24 41.84 4.40
1305 1509 1.883084 CTATGGCGACGGCACTTCC 60.883 63.158 27.40 2.81 41.84 3.46
1897 2101 1.948104 CCTGGTGTTTCACTTCGACA 58.052 50.000 0.00 0.00 34.40 4.35
2102 2306 4.438148 GAGCTCTAGGATTGGTGAAAGTC 58.562 47.826 6.43 0.00 0.00 3.01
2104 2308 5.273208 AGCTCTAGGATTGGTGAAAGTCTA 58.727 41.667 0.00 0.00 0.00 2.59
2149 2353 9.816354 AAAAAGATTGTTGCAAGTTAGTTGTAT 57.184 25.926 0.00 0.00 38.55 2.29
2150 2354 9.463443 AAAAGATTGTTGCAAGTTAGTTGTATC 57.537 29.630 0.00 0.00 38.55 2.24
2151 2355 6.831769 AGATTGTTGCAAGTTAGTTGTATCG 58.168 36.000 0.00 0.00 38.55 2.92
2152 2356 6.649141 AGATTGTTGCAAGTTAGTTGTATCGA 59.351 34.615 0.00 0.00 38.55 3.59
2153 2357 5.585500 TGTTGCAAGTTAGTTGTATCGAC 57.415 39.130 0.00 0.00 38.55 4.20
2154 2358 4.149221 TGTTGCAAGTTAGTTGTATCGACG 59.851 41.667 0.00 0.00 38.55 5.12
2155 2359 4.163458 TGCAAGTTAGTTGTATCGACGA 57.837 40.909 0.00 0.00 38.55 4.20
2156 2360 4.163552 TGCAAGTTAGTTGTATCGACGAG 58.836 43.478 3.01 0.00 38.55 4.18
2157 2361 3.546670 GCAAGTTAGTTGTATCGACGAGG 59.453 47.826 3.01 0.00 38.55 4.63
2158 2362 4.730657 CAAGTTAGTTGTATCGACGAGGT 58.269 43.478 3.01 0.00 0.00 3.85
2159 2363 4.352600 AGTTAGTTGTATCGACGAGGTG 57.647 45.455 3.01 0.00 0.00 4.00
2160 2364 4.005650 AGTTAGTTGTATCGACGAGGTGA 58.994 43.478 3.01 0.00 0.00 4.02
2161 2365 2.915738 AGTTGTATCGACGAGGTGAC 57.084 50.000 3.01 0.07 0.00 3.67
2162 2366 1.129998 AGTTGTATCGACGAGGTGACG 59.870 52.381 3.01 0.00 37.08 4.35
2163 2367 0.448990 TTGTATCGACGAGGTGACGG 59.551 55.000 3.01 0.00 36.39 4.79
2164 2368 1.298190 GTATCGACGAGGTGACGGC 60.298 63.158 3.01 0.00 36.39 5.68
2165 2369 1.450848 TATCGACGAGGTGACGGCT 60.451 57.895 3.01 0.00 39.34 5.52
2166 2370 0.179076 TATCGACGAGGTGACGGCTA 60.179 55.000 3.01 0.00 39.34 3.93
2167 2371 1.437772 ATCGACGAGGTGACGGCTAG 61.438 60.000 3.01 0.00 39.34 3.42
2168 2372 2.396955 CGACGAGGTGACGGCTAGT 61.397 63.158 0.00 0.00 39.34 2.57
2169 2373 1.881602 GACGAGGTGACGGCTAGTT 59.118 57.895 0.00 0.00 38.37 2.24
2170 2374 0.243095 GACGAGGTGACGGCTAGTTT 59.757 55.000 0.00 0.00 38.37 2.66
2171 2375 0.677842 ACGAGGTGACGGCTAGTTTT 59.322 50.000 0.00 0.00 37.61 2.43
2172 2376 1.069668 ACGAGGTGACGGCTAGTTTTT 59.930 47.619 0.00 0.00 37.61 1.94
2197 2401 4.929819 TTTAGCAAAAGAGGGTTTCCAC 57.070 40.909 0.00 0.00 34.83 4.02
2198 2402 1.318576 AGCAAAAGAGGGTTTCCACG 58.681 50.000 0.00 0.00 34.83 4.94
2199 2403 0.318699 GCAAAAGAGGGTTTCCACGC 60.319 55.000 0.00 0.00 36.07 5.34
2200 2404 1.028905 CAAAAGAGGGTTTCCACGCA 58.971 50.000 0.00 0.00 38.34 5.24
2201 2405 1.001378 CAAAAGAGGGTTTCCACGCAG 60.001 52.381 0.00 0.00 38.34 5.18
2203 2407 0.182775 AAGAGGGTTTCCACGCAGTT 59.817 50.000 0.00 0.00 41.61 3.16
2204 2408 0.535102 AGAGGGTTTCCACGCAGTTG 60.535 55.000 0.00 0.00 41.61 3.16
2205 2409 0.818040 GAGGGTTTCCACGCAGTTGT 60.818 55.000 0.00 0.00 41.61 3.32
2206 2410 0.395173 AGGGTTTCCACGCAGTTGTT 60.395 50.000 0.00 0.00 41.61 2.83
2207 2411 1.134037 AGGGTTTCCACGCAGTTGTTA 60.134 47.619 0.00 0.00 41.61 2.41
2208 2412 1.883926 GGGTTTCCACGCAGTTGTTAT 59.116 47.619 0.00 0.00 41.61 1.89
2209 2413 2.351350 GGGTTTCCACGCAGTTGTTATG 60.351 50.000 0.00 0.00 41.61 1.90
2210 2414 2.550606 GGTTTCCACGCAGTTGTTATGA 59.449 45.455 0.00 0.00 41.61 2.15
2211 2415 3.190535 GGTTTCCACGCAGTTGTTATGAT 59.809 43.478 0.00 0.00 41.61 2.45
2212 2416 4.403453 GTTTCCACGCAGTTGTTATGATC 58.597 43.478 0.00 0.00 41.61 2.92
2213 2417 2.627945 TCCACGCAGTTGTTATGATCC 58.372 47.619 0.00 0.00 41.61 3.36
2214 2418 1.670811 CCACGCAGTTGTTATGATCCC 59.329 52.381 0.00 0.00 41.61 3.85
2215 2419 1.327460 CACGCAGTTGTTATGATCCCG 59.673 52.381 0.00 0.00 41.61 5.14
2216 2420 1.206132 ACGCAGTTGTTATGATCCCGA 59.794 47.619 0.00 0.00 37.78 5.14
2217 2421 1.860950 CGCAGTTGTTATGATCCCGAG 59.139 52.381 0.00 0.00 0.00 4.63
2218 2422 1.599542 GCAGTTGTTATGATCCCGAGC 59.400 52.381 0.00 0.00 0.00 5.03
2219 2423 2.743183 GCAGTTGTTATGATCCCGAGCT 60.743 50.000 0.00 0.00 0.00 4.09
2220 2424 3.535561 CAGTTGTTATGATCCCGAGCTT 58.464 45.455 0.00 0.00 0.00 3.74
2221 2425 4.693283 CAGTTGTTATGATCCCGAGCTTA 58.307 43.478 0.00 0.00 0.00 3.09
2222 2426 4.508124 CAGTTGTTATGATCCCGAGCTTAC 59.492 45.833 0.00 0.00 0.00 2.34
2223 2427 4.161565 AGTTGTTATGATCCCGAGCTTACA 59.838 41.667 0.00 0.00 0.00 2.41
2224 2428 4.955811 TGTTATGATCCCGAGCTTACAT 57.044 40.909 0.00 0.00 0.00 2.29
2225 2429 4.631131 TGTTATGATCCCGAGCTTACATG 58.369 43.478 0.00 0.00 0.00 3.21
2226 2430 4.343814 TGTTATGATCCCGAGCTTACATGA 59.656 41.667 0.00 0.00 0.00 3.07
2227 2431 3.674528 ATGATCCCGAGCTTACATGAG 57.325 47.619 0.00 0.00 0.00 2.90
2228 2432 1.069204 TGATCCCGAGCTTACATGAGC 59.931 52.381 0.00 0.00 43.02 4.26
2237 2441 3.543680 GCTTACATGAGCTTGGGTAGA 57.456 47.619 0.00 0.00 39.57 2.59
2238 2442 3.198872 GCTTACATGAGCTTGGGTAGAC 58.801 50.000 0.00 0.00 39.57 2.59
2239 2443 3.369471 GCTTACATGAGCTTGGGTAGACA 60.369 47.826 0.00 0.00 39.57 3.41
2240 2444 4.437239 CTTACATGAGCTTGGGTAGACAG 58.563 47.826 0.00 0.00 0.00 3.51
2296 2500 1.831736 CCCGTCTTATGTTGGTCCTCT 59.168 52.381 0.00 0.00 0.00 3.69
2299 2503 3.684788 CCGTCTTATGTTGGTCCTCTTTG 59.315 47.826 0.00 0.00 0.00 2.77
2317 2521 3.787001 GTCCGCCTCCCCTTCCAG 61.787 72.222 0.00 0.00 0.00 3.86
2320 2524 3.330720 CGCCTCCCCTTCCAGGTT 61.331 66.667 0.00 0.00 31.93 3.50
2321 2525 2.907179 CGCCTCCCCTTCCAGGTTT 61.907 63.158 0.00 0.00 31.93 3.27
2322 2526 1.465172 GCCTCCCCTTCCAGGTTTT 59.535 57.895 0.00 0.00 31.93 2.43
2325 2529 1.272147 CCTCCCCTTCCAGGTTTTCAG 60.272 57.143 0.00 0.00 31.93 3.02
2330 2534 2.818970 CCCTTCCAGGTTTTCAGCATGA 60.819 50.000 0.00 0.00 37.12 3.07
2402 2610 4.455877 CCGGTAATCAATCCTTTCCATAGC 59.544 45.833 0.00 0.00 0.00 2.97
2420 2722 1.597461 CCTGTTTCCTCTCCCGTCC 59.403 63.158 0.00 0.00 0.00 4.79
2421 2723 0.905337 CCTGTTTCCTCTCCCGTCCT 60.905 60.000 0.00 0.00 0.00 3.85
2439 2760 1.230149 TACATGCTCCCACCCCCTT 60.230 57.895 0.00 0.00 0.00 3.95
2476 2797 5.246203 TCTCCTCCCGATCAATATTTGGTAG 59.754 44.000 0.00 0.00 0.00 3.18
2494 2815 4.179298 GGTAGGTCAGTCAATTAACGGAC 58.821 47.826 3.59 3.59 41.72 4.79
2554 2878 6.375174 CCACAACTAATTCAGGTCAATCATGA 59.625 38.462 0.00 0.00 34.96 3.07
2586 2910 7.749377 TCTCTCATATTCCTTCCTTTAACCA 57.251 36.000 0.00 0.00 0.00 3.67
2597 2921 5.191921 CCTTCCTTTAACCATTCCCTCTACT 59.808 44.000 0.00 0.00 0.00 2.57
2616 2953 2.223688 ACTTCGCATCTTCTCGATCCTG 60.224 50.000 0.00 0.00 34.48 3.86
2668 3005 1.134521 GTACAATGCTCGATGGGGTCA 60.135 52.381 0.00 0.00 0.00 4.02
2733 3070 1.026718 GGCACAAGAAGATGGGGTCG 61.027 60.000 0.00 0.00 0.00 4.79
2801 3138 1.617947 GCTTCCCACCGGTGATCTCT 61.618 60.000 36.07 0.00 0.00 3.10
2837 3176 0.547712 TTGCTTAGGAGGAGGGCACT 60.548 55.000 0.00 0.00 32.47 4.40
2985 3324 1.434555 TCAATTCCCGTGCTGTAACG 58.565 50.000 0.00 0.00 43.20 3.18
2997 3336 2.857748 TGCTGTAACGTGCGATCTAATG 59.142 45.455 0.00 0.00 0.00 1.90
3006 3345 3.242944 CGTGCGATCTAATGTAACCACTG 59.757 47.826 0.00 0.00 0.00 3.66
3007 3346 3.001330 GTGCGATCTAATGTAACCACTGC 59.999 47.826 0.00 0.00 0.00 4.40
3008 3347 3.118775 TGCGATCTAATGTAACCACTGCT 60.119 43.478 0.00 0.00 0.00 4.24
3009 3348 3.246226 GCGATCTAATGTAACCACTGCTG 59.754 47.826 0.00 0.00 0.00 4.41
3010 3349 4.682787 CGATCTAATGTAACCACTGCTGA 58.317 43.478 0.00 0.00 0.00 4.26
3011 3350 5.109210 CGATCTAATGTAACCACTGCTGAA 58.891 41.667 0.00 0.00 0.00 3.02
3012 3351 5.755375 CGATCTAATGTAACCACTGCTGAAT 59.245 40.000 0.00 0.00 0.00 2.57
3013 3352 6.923508 CGATCTAATGTAACCACTGCTGAATA 59.076 38.462 0.00 0.00 0.00 1.75
3014 3353 7.600375 CGATCTAATGTAACCACTGCTGAATAT 59.400 37.037 0.00 0.00 0.00 1.28
3015 3354 9.277783 GATCTAATGTAACCACTGCTGAATATT 57.722 33.333 0.00 0.00 0.00 1.28
3017 3356 9.764363 TCTAATGTAACCACTGCTGAATATTAG 57.236 33.333 0.00 0.00 0.00 1.73
3018 3357 9.547753 CTAATGTAACCACTGCTGAATATTAGT 57.452 33.333 0.00 0.00 0.00 2.24
3019 3358 8.807948 AATGTAACCACTGCTGAATATTAGTT 57.192 30.769 0.00 0.00 0.00 2.24
3020 3359 7.609760 TGTAACCACTGCTGAATATTAGTTG 57.390 36.000 0.00 0.00 0.00 3.16
3021 3360 6.597672 TGTAACCACTGCTGAATATTAGTTGG 59.402 38.462 0.00 0.00 0.00 3.77
3022 3361 5.435686 ACCACTGCTGAATATTAGTTGGA 57.564 39.130 0.00 0.00 0.00 3.53
3023 3362 5.186198 ACCACTGCTGAATATTAGTTGGAC 58.814 41.667 0.00 0.00 0.00 4.02
3024 3363 5.045578 ACCACTGCTGAATATTAGTTGGACT 60.046 40.000 0.00 0.00 0.00 3.85
3025 3364 6.156256 ACCACTGCTGAATATTAGTTGGACTA 59.844 38.462 0.00 0.00 0.00 2.59
3026 3365 6.480320 CCACTGCTGAATATTAGTTGGACTAC 59.520 42.308 0.00 0.00 28.93 2.73
3027 3366 7.041721 CACTGCTGAATATTAGTTGGACTACA 58.958 38.462 0.00 0.00 28.93 2.74
3028 3367 7.223582 CACTGCTGAATATTAGTTGGACTACAG 59.776 40.741 0.00 0.00 28.93 2.74
3029 3368 7.124298 ACTGCTGAATATTAGTTGGACTACAGA 59.876 37.037 0.00 0.00 28.93 3.41
3030 3369 7.265673 TGCTGAATATTAGTTGGACTACAGAC 58.734 38.462 0.00 0.00 28.93 3.51
3031 3370 6.702282 GCTGAATATTAGTTGGACTACAGACC 59.298 42.308 0.00 0.00 28.93 3.85
3032 3371 7.120923 TGAATATTAGTTGGACTACAGACCC 57.879 40.000 0.00 0.00 28.93 4.46
3033 3372 6.670464 TGAATATTAGTTGGACTACAGACCCA 59.330 38.462 0.00 0.00 28.93 4.51
3034 3373 7.347222 TGAATATTAGTTGGACTACAGACCCAT 59.653 37.037 0.00 0.00 28.93 4.00
3035 3374 7.691993 ATATTAGTTGGACTACAGACCCATT 57.308 36.000 0.00 0.00 28.93 3.16
3036 3375 5.836024 TTAGTTGGACTACAGACCCATTT 57.164 39.130 0.00 0.00 28.93 2.32
3037 3376 6.938698 TTAGTTGGACTACAGACCCATTTA 57.061 37.500 0.00 0.00 28.93 1.40
3038 3377 5.836024 AGTTGGACTACAGACCCATTTAA 57.164 39.130 0.00 0.00 0.00 1.52
3039 3378 5.557866 AGTTGGACTACAGACCCATTTAAC 58.442 41.667 0.00 0.00 0.00 2.01
3040 3379 5.072600 AGTTGGACTACAGACCCATTTAACA 59.927 40.000 0.00 0.00 0.00 2.41
3041 3380 5.570205 TGGACTACAGACCCATTTAACAA 57.430 39.130 0.00 0.00 0.00 2.83
3042 3381 6.134535 TGGACTACAGACCCATTTAACAAT 57.865 37.500 0.00 0.00 0.00 2.71
3043 3382 6.548321 TGGACTACAGACCCATTTAACAATT 58.452 36.000 0.00 0.00 0.00 2.32
3044 3383 7.007723 TGGACTACAGACCCATTTAACAATTT 58.992 34.615 0.00 0.00 0.00 1.82
3045 3384 7.175990 TGGACTACAGACCCATTTAACAATTTC 59.824 37.037 0.00 0.00 0.00 2.17
3046 3385 7.175990 GGACTACAGACCCATTTAACAATTTCA 59.824 37.037 0.00 0.00 0.00 2.69
3047 3386 8.110860 ACTACAGACCCATTTAACAATTTCAG 57.889 34.615 0.00 0.00 0.00 3.02
3048 3387 7.942341 ACTACAGACCCATTTAACAATTTCAGA 59.058 33.333 0.00 0.00 0.00 3.27
3049 3388 7.595819 ACAGACCCATTTAACAATTTCAGAA 57.404 32.000 0.00 0.00 0.00 3.02
3050 3389 8.017418 ACAGACCCATTTAACAATTTCAGAAA 57.983 30.769 0.00 0.00 0.00 2.52
3051 3390 8.482128 ACAGACCCATTTAACAATTTCAGAAAA 58.518 29.630 0.00 0.00 0.00 2.29
3052 3391 9.492973 CAGACCCATTTAACAATTTCAGAAAAT 57.507 29.630 0.00 0.00 36.64 1.82
3055 3394 9.719355 ACCCATTTAACAATTTCAGAAAATACC 57.281 29.630 0.00 0.00 33.93 2.73
3056 3395 9.942850 CCCATTTAACAATTTCAGAAAATACCT 57.057 29.630 0.00 0.00 33.93 3.08
3063 3402 7.602753 ACAATTTCAGAAAATACCTAAGTGCC 58.397 34.615 0.00 0.00 33.93 5.01
3064 3403 6.775594 ATTTCAGAAAATACCTAAGTGCCC 57.224 37.500 0.00 0.00 33.27 5.36
3065 3404 4.919774 TCAGAAAATACCTAAGTGCCCA 57.080 40.909 0.00 0.00 0.00 5.36
3066 3405 5.450818 TCAGAAAATACCTAAGTGCCCAT 57.549 39.130 0.00 0.00 0.00 4.00
3067 3406 5.192927 TCAGAAAATACCTAAGTGCCCATG 58.807 41.667 0.00 0.00 0.00 3.66
3068 3407 3.954258 AGAAAATACCTAAGTGCCCATGC 59.046 43.478 0.00 0.00 38.26 4.06
3069 3408 3.669939 AAATACCTAAGTGCCCATGCT 57.330 42.857 0.00 0.00 38.71 3.79
3070 3409 2.645838 ATACCTAAGTGCCCATGCTG 57.354 50.000 0.00 0.00 38.71 4.41
3071 3410 1.285280 TACCTAAGTGCCCATGCTGT 58.715 50.000 0.00 0.00 38.71 4.40
3072 3411 1.285280 ACCTAAGTGCCCATGCTGTA 58.715 50.000 0.00 0.00 38.71 2.74
3073 3412 1.633432 ACCTAAGTGCCCATGCTGTAA 59.367 47.619 0.00 0.00 38.71 2.41
3074 3413 2.041081 ACCTAAGTGCCCATGCTGTAAA 59.959 45.455 0.00 0.00 38.71 2.01
3075 3414 3.290710 CCTAAGTGCCCATGCTGTAAAT 58.709 45.455 0.00 0.00 38.71 1.40
3076 3415 3.701040 CCTAAGTGCCCATGCTGTAAATT 59.299 43.478 0.00 0.00 38.71 1.82
3077 3416 4.887071 CCTAAGTGCCCATGCTGTAAATTA 59.113 41.667 0.00 0.00 38.71 1.40
3078 3417 5.359576 CCTAAGTGCCCATGCTGTAAATTAA 59.640 40.000 0.00 0.00 38.71 1.40
3079 3418 4.989279 AGTGCCCATGCTGTAAATTAAG 57.011 40.909 0.00 0.00 38.71 1.85
3080 3419 4.344104 AGTGCCCATGCTGTAAATTAAGT 58.656 39.130 0.00 0.00 38.71 2.24
3081 3420 5.505780 AGTGCCCATGCTGTAAATTAAGTA 58.494 37.500 0.00 0.00 38.71 2.24
3082 3421 5.590259 AGTGCCCATGCTGTAAATTAAGTAG 59.410 40.000 0.00 0.00 38.71 2.57
3083 3422 5.357032 GTGCCCATGCTGTAAATTAAGTAGT 59.643 40.000 0.00 0.00 38.71 2.73
3084 3423 5.356751 TGCCCATGCTGTAAATTAAGTAGTG 59.643 40.000 0.00 0.00 38.71 2.74
3085 3424 5.221048 GCCCATGCTGTAAATTAAGTAGTGG 60.221 44.000 0.00 0.00 33.53 4.00
3086 3425 5.299279 CCCATGCTGTAAATTAAGTAGTGGG 59.701 44.000 0.00 0.00 35.86 4.61
3087 3426 6.119536 CCATGCTGTAAATTAAGTAGTGGGA 58.880 40.000 0.00 0.00 0.00 4.37
3088 3427 6.601613 CCATGCTGTAAATTAAGTAGTGGGAA 59.398 38.462 0.00 0.00 0.00 3.97
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 1.257750 TGCCACCGCTATGTGAGTCT 61.258 55.000 0.00 0.00 38.55 3.24
1 2 0.807667 CTGCCACCGCTATGTGAGTC 60.808 60.000 0.00 0.00 38.55 3.36
3 4 2.176273 GCTGCCACCGCTATGTGAG 61.176 63.158 0.00 0.00 38.55 3.51
5 6 2.124983 AGCTGCCACCGCTATGTG 60.125 61.111 0.00 0.00 35.63 3.21
6 7 2.124983 CAGCTGCCACCGCTATGT 60.125 61.111 0.00 0.00 35.63 2.29
7 8 2.898840 CCAGCTGCCACCGCTATG 60.899 66.667 8.66 0.00 35.63 2.23
8 9 2.971598 AACCAGCTGCCACCGCTAT 61.972 57.895 8.66 0.00 35.63 2.97
9 10 3.636231 AACCAGCTGCCACCGCTA 61.636 61.111 8.66 0.00 35.63 4.26
12 13 0.960364 ATTACAACCAGCTGCCACCG 60.960 55.000 8.66 0.00 0.00 4.94
13 14 2.122783 TATTACAACCAGCTGCCACC 57.877 50.000 8.66 0.00 0.00 4.61
14 15 3.016736 ACATATTACAACCAGCTGCCAC 58.983 45.455 8.66 0.00 0.00 5.01
15 16 3.364460 ACATATTACAACCAGCTGCCA 57.636 42.857 8.66 0.00 0.00 4.92
16 17 4.157656 TGAAACATATTACAACCAGCTGCC 59.842 41.667 8.66 0.00 0.00 4.85
17 18 5.309323 TGAAACATATTACAACCAGCTGC 57.691 39.130 8.66 0.00 0.00 5.25
18 19 6.913170 AGTTGAAACATATTACAACCAGCTG 58.087 36.000 6.78 6.78 42.05 4.24
19 20 6.151144 GGAGTTGAAACATATTACAACCAGCT 59.849 38.462 0.00 0.00 42.05 4.24
20 21 6.322491 GGAGTTGAAACATATTACAACCAGC 58.678 40.000 0.00 0.00 42.05 4.85
21 22 6.403200 CGGGAGTTGAAACATATTACAACCAG 60.403 42.308 0.00 0.00 42.05 4.00
22 23 5.413213 CGGGAGTTGAAACATATTACAACCA 59.587 40.000 0.00 0.00 42.05 3.67
23 24 5.675323 GCGGGAGTTGAAACATATTACAACC 60.675 44.000 0.00 0.00 42.05 3.77
24 25 5.123344 AGCGGGAGTTGAAACATATTACAAC 59.877 40.000 0.00 0.00 41.61 3.32
25 26 5.250200 AGCGGGAGTTGAAACATATTACAA 58.750 37.500 0.00 0.00 0.00 2.41
26 27 4.839121 AGCGGGAGTTGAAACATATTACA 58.161 39.130 0.00 0.00 0.00 2.41
27 28 5.585047 AGAAGCGGGAGTTGAAACATATTAC 59.415 40.000 0.00 0.00 0.00 1.89
28 29 5.741011 AGAAGCGGGAGTTGAAACATATTA 58.259 37.500 0.00 0.00 0.00 0.98
29 30 4.589908 AGAAGCGGGAGTTGAAACATATT 58.410 39.130 0.00 0.00 0.00 1.28
30 31 4.222124 AGAAGCGGGAGTTGAAACATAT 57.778 40.909 0.00 0.00 0.00 1.78
31 32 3.695830 AGAAGCGGGAGTTGAAACATA 57.304 42.857 0.00 0.00 0.00 2.29
32 33 2.568623 AGAAGCGGGAGTTGAAACAT 57.431 45.000 0.00 0.00 0.00 2.71
33 34 2.218603 GAAGAAGCGGGAGTTGAAACA 58.781 47.619 0.00 0.00 0.00 2.83
34 35 1.535896 GGAAGAAGCGGGAGTTGAAAC 59.464 52.381 0.00 0.00 0.00 2.78
35 36 1.876416 CGGAAGAAGCGGGAGTTGAAA 60.876 52.381 0.00 0.00 0.00 2.69
36 37 0.320421 CGGAAGAAGCGGGAGTTGAA 60.320 55.000 0.00 0.00 0.00 2.69
37 38 1.292223 CGGAAGAAGCGGGAGTTGA 59.708 57.895 0.00 0.00 0.00 3.18
38 39 0.602905 AACGGAAGAAGCGGGAGTTG 60.603 55.000 0.00 0.00 0.00 3.16
39 40 0.108019 AAACGGAAGAAGCGGGAGTT 59.892 50.000 0.00 0.00 0.00 3.01
40 41 0.108019 AAAACGGAAGAAGCGGGAGT 59.892 50.000 0.00 0.00 0.00 3.85
41 42 0.796927 GAAAACGGAAGAAGCGGGAG 59.203 55.000 0.00 0.00 0.00 4.30
42 43 0.107081 TGAAAACGGAAGAAGCGGGA 59.893 50.000 0.00 0.00 0.00 5.14
43 44 0.517316 CTGAAAACGGAAGAAGCGGG 59.483 55.000 0.00 0.00 0.00 6.13
44 45 1.461127 CTCTGAAAACGGAAGAAGCGG 59.539 52.381 0.00 0.00 0.00 5.52
45 46 1.136224 GCTCTGAAAACGGAAGAAGCG 60.136 52.381 0.00 0.00 0.00 4.68
46 47 2.096019 CAGCTCTGAAAACGGAAGAAGC 60.096 50.000 0.00 0.00 0.00 3.86
47 48 2.481952 CCAGCTCTGAAAACGGAAGAAG 59.518 50.000 0.00 0.00 0.00 2.85
48 49 2.104111 TCCAGCTCTGAAAACGGAAGAA 59.896 45.455 0.00 0.00 0.00 2.52
49 50 1.691976 TCCAGCTCTGAAAACGGAAGA 59.308 47.619 0.00 0.00 0.00 2.87
50 51 2.169832 TCCAGCTCTGAAAACGGAAG 57.830 50.000 0.00 0.00 0.00 3.46
51 52 2.631160 TTCCAGCTCTGAAAACGGAA 57.369 45.000 0.00 0.00 0.00 4.30
52 53 2.631160 TTTCCAGCTCTGAAAACGGA 57.369 45.000 5.65 0.00 0.00 4.69
53 54 3.632189 CTTTTTCCAGCTCTGAAAACGG 58.368 45.455 16.46 10.74 0.00 4.44
54 55 3.045688 GCTTTTTCCAGCTCTGAAAACG 58.954 45.455 16.46 15.71 36.79 3.60
55 56 3.181476 TGGCTTTTTCCAGCTCTGAAAAC 60.181 43.478 16.46 9.01 39.97 2.43
56 57 3.030291 TGGCTTTTTCCAGCTCTGAAAA 58.970 40.909 13.92 13.92 39.97 2.29
57 58 2.624838 CTGGCTTTTTCCAGCTCTGAAA 59.375 45.455 4.25 4.25 46.11 2.69
58 59 2.233271 CTGGCTTTTTCCAGCTCTGAA 58.767 47.619 0.00 0.00 46.11 3.02
59 60 1.901591 CTGGCTTTTTCCAGCTCTGA 58.098 50.000 0.00 0.00 46.11 3.27
79 80 2.295253 AATACGGAGGAGTTGCGAAG 57.705 50.000 0.00 0.00 44.18 3.79
80 81 2.754946 AAATACGGAGGAGTTGCGAA 57.245 45.000 0.00 0.00 44.18 4.70
81 82 2.492881 TGTAAATACGGAGGAGTTGCGA 59.507 45.455 0.00 0.00 44.18 5.10
83 84 3.858247 AGTGTAAATACGGAGGAGTTGC 58.142 45.455 0.00 0.00 0.00 4.17
94 95 1.856597 CTGCCCGCGTAGTGTAAATAC 59.143 52.381 4.92 0.00 35.45 1.89
95 96 1.803625 GCTGCCCGCGTAGTGTAAATA 60.804 52.381 4.92 0.00 35.45 1.40
96 97 1.087771 GCTGCCCGCGTAGTGTAAAT 61.088 55.000 4.92 0.00 35.45 1.40
97 98 1.738830 GCTGCCCGCGTAGTGTAAA 60.739 57.895 4.92 0.00 35.45 2.01
98 99 2.125832 GCTGCCCGCGTAGTGTAA 60.126 61.111 4.92 0.00 35.45 2.41
99 100 3.066190 AGCTGCCCGCGTAGTGTA 61.066 61.111 4.92 0.00 45.59 2.90
100 101 4.742201 CAGCTGCCCGCGTAGTGT 62.742 66.667 4.92 0.00 45.59 3.55
108 109 3.907260 TTGAGAAGCCAGCTGCCCG 62.907 63.158 8.66 0.00 42.71 6.13
109 110 0.969409 AATTGAGAAGCCAGCTGCCC 60.969 55.000 8.66 0.77 42.71 5.36
110 111 0.455005 GAATTGAGAAGCCAGCTGCC 59.545 55.000 8.66 0.00 42.71 4.85
111 112 0.455005 GGAATTGAGAAGCCAGCTGC 59.545 55.000 8.66 3.91 41.71 5.25
112 113 0.731417 CGGAATTGAGAAGCCAGCTG 59.269 55.000 6.78 6.78 0.00 4.24
113 114 0.326264 ACGGAATTGAGAAGCCAGCT 59.674 50.000 0.00 0.00 0.00 4.24
114 115 1.666189 GTACGGAATTGAGAAGCCAGC 59.334 52.381 0.00 0.00 0.00 4.85
115 116 3.190874 GAGTACGGAATTGAGAAGCCAG 58.809 50.000 0.00 0.00 0.00 4.85
116 117 2.093658 GGAGTACGGAATTGAGAAGCCA 60.094 50.000 0.00 0.00 0.00 4.75
117 118 2.552031 GGAGTACGGAATTGAGAAGCC 58.448 52.381 0.00 0.00 0.00 4.35
118 119 2.194271 CGGAGTACGGAATTGAGAAGC 58.806 52.381 0.00 0.00 39.42 3.86
119 120 2.194271 GCGGAGTACGGAATTGAGAAG 58.806 52.381 0.00 0.00 44.51 2.85
120 121 1.468565 CGCGGAGTACGGAATTGAGAA 60.469 52.381 0.00 0.00 44.51 2.87
121 122 0.099968 CGCGGAGTACGGAATTGAGA 59.900 55.000 0.00 0.00 44.51 3.27
122 123 2.578369 CGCGGAGTACGGAATTGAG 58.422 57.895 0.00 0.00 44.51 3.02
123 124 4.798288 CGCGGAGTACGGAATTGA 57.202 55.556 0.00 0.00 44.51 2.57
134 135 4.544689 CGCTCTGACTCCGCGGAG 62.545 72.222 45.26 45.26 46.91 4.63
138 139 2.876645 CGAACGCTCTGACTCCGC 60.877 66.667 0.00 0.00 0.00 5.54
139 140 2.202492 CCGAACGCTCTGACTCCG 60.202 66.667 0.00 0.00 0.00 4.63
140 141 2.507324 GCCGAACGCTCTGACTCC 60.507 66.667 0.00 0.00 0.00 3.85
149 150 3.491652 GGAAGCTGAGCCGAACGC 61.492 66.667 0.00 0.00 37.98 4.84
150 151 1.424493 GATGGAAGCTGAGCCGAACG 61.424 60.000 0.00 0.00 0.00 3.95
151 152 0.107945 AGATGGAAGCTGAGCCGAAC 60.108 55.000 0.00 0.00 0.00 3.95
152 153 0.615331 AAGATGGAAGCTGAGCCGAA 59.385 50.000 0.00 0.00 24.31 4.30
153 154 0.107993 CAAGATGGAAGCTGAGCCGA 60.108 55.000 0.00 0.00 24.31 5.54
154 155 1.094073 CCAAGATGGAAGCTGAGCCG 61.094 60.000 0.00 0.00 40.96 5.52
155 156 0.254178 TCCAAGATGGAAGCTGAGCC 59.746 55.000 0.00 0.00 45.00 4.70
156 157 3.869623 TCCAAGATGGAAGCTGAGC 57.130 52.632 0.00 0.00 45.00 4.26
164 165 2.026822 GCTTCTCCAACTCCAAGATGGA 60.027 50.000 5.91 5.91 43.73 3.41
165 166 2.026449 AGCTTCTCCAACTCCAAGATGG 60.026 50.000 0.00 0.00 39.29 3.51
166 167 3.008330 CAGCTTCTCCAACTCCAAGATG 58.992 50.000 0.00 0.00 0.00 2.90
167 168 2.026449 CCAGCTTCTCCAACTCCAAGAT 60.026 50.000 0.00 0.00 0.00 2.40
168 169 1.349026 CCAGCTTCTCCAACTCCAAGA 59.651 52.381 0.00 0.00 0.00 3.02
169 170 1.818642 CCAGCTTCTCCAACTCCAAG 58.181 55.000 0.00 0.00 0.00 3.61
170 171 0.250901 GCCAGCTTCTCCAACTCCAA 60.251 55.000 0.00 0.00 0.00 3.53
171 172 1.130054 AGCCAGCTTCTCCAACTCCA 61.130 55.000 0.00 0.00 0.00 3.86
172 173 0.676151 CAGCCAGCTTCTCCAACTCC 60.676 60.000 0.00 0.00 0.00 3.85
173 174 1.304509 GCAGCCAGCTTCTCCAACTC 61.305 60.000 0.00 0.00 41.15 3.01
174 175 1.303155 GCAGCCAGCTTCTCCAACT 60.303 57.895 0.00 0.00 41.15 3.16
175 176 3.272031 GCAGCCAGCTTCTCCAAC 58.728 61.111 0.00 0.00 41.15 3.77
185 186 3.429141 CAACGCTCCAGCAGCCAG 61.429 66.667 0.00 0.00 46.74 4.85
203 204 0.462789 AAGGTGTAGGGCGTATTCGG 59.537 55.000 0.00 0.00 37.56 4.30
204 205 3.441496 TTAAGGTGTAGGGCGTATTCG 57.559 47.619 0.00 0.00 40.37 3.34
205 206 4.763073 ACTTTAAGGTGTAGGGCGTATTC 58.237 43.478 0.00 0.00 0.00 1.75
206 207 4.831674 ACTTTAAGGTGTAGGGCGTATT 57.168 40.909 0.00 0.00 0.00 1.89
207 208 4.468868 AGAACTTTAAGGTGTAGGGCGTAT 59.531 41.667 0.00 0.00 0.00 3.06
208 209 3.834231 AGAACTTTAAGGTGTAGGGCGTA 59.166 43.478 0.00 0.00 0.00 4.42
209 210 2.636403 AGAACTTTAAGGTGTAGGGCGT 59.364 45.455 0.00 0.00 0.00 5.68
210 211 3.329929 AGAACTTTAAGGTGTAGGGCG 57.670 47.619 0.00 0.00 0.00 6.13
211 212 6.401047 AAAAAGAACTTTAAGGTGTAGGGC 57.599 37.500 0.00 0.00 31.63 5.19
216 217 7.713507 GCCCATTTAAAAAGAACTTTAAGGTGT 59.286 33.333 0.00 0.00 33.48 4.16
217 218 7.931407 AGCCCATTTAAAAAGAACTTTAAGGTG 59.069 33.333 0.00 0.00 33.48 4.00
218 219 8.029782 AGCCCATTTAAAAAGAACTTTAAGGT 57.970 30.769 0.00 0.00 33.48 3.50
219 220 8.902540 AAGCCCATTTAAAAAGAACTTTAAGG 57.097 30.769 0.00 0.00 33.48 2.69
220 221 9.764363 AGAAGCCCATTTAAAAAGAACTTTAAG 57.236 29.630 0.14 0.00 33.48 1.85
221 222 9.541143 CAGAAGCCCATTTAAAAAGAACTTTAA 57.459 29.630 0.14 0.00 31.63 1.52
222 223 8.919145 TCAGAAGCCCATTTAAAAAGAACTTTA 58.081 29.630 0.14 0.00 31.63 1.85
223 224 7.791029 TCAGAAGCCCATTTAAAAAGAACTTT 58.209 30.769 0.00 0.00 0.00 2.66
224 225 7.360113 TCAGAAGCCCATTTAAAAAGAACTT 57.640 32.000 0.00 0.00 0.00 2.66
298 299 0.764890 TGGGTGGTTTGAGAGTCTGG 59.235 55.000 0.00 0.00 0.00 3.86
302 303 2.276732 CACATGGGTGGTTTGAGAGT 57.723 50.000 0.00 0.00 41.45 3.24
373 374 4.728772 TGATTCAGGATGTGGACTTGTTT 58.271 39.130 0.00 0.00 37.40 2.83
389 390 7.710475 TCATAATCTTATGTGCGTCTTGATTCA 59.290 33.333 9.20 0.00 40.97 2.57
399 400 7.644945 TGCAGAAAATTCATAATCTTATGTGCG 59.355 33.333 9.20 0.00 40.97 5.34
460 478 8.795513 TGGATTTTCATTGTAGGTGCATATATG 58.204 33.333 8.45 8.45 0.00 1.78
463 481 6.266103 CCTGGATTTTCATTGTAGGTGCATAT 59.734 38.462 0.00 0.00 0.00 1.78
465 483 4.403432 CCTGGATTTTCATTGTAGGTGCAT 59.597 41.667 0.00 0.00 0.00 3.96
468 486 5.256474 ACTCCTGGATTTTCATTGTAGGTG 58.744 41.667 0.00 0.00 0.00 4.00
485 503 8.863049 GTGCACAATTCAAATATTAAACTCCTG 58.137 33.333 13.17 0.00 0.00 3.86
524 542 4.856801 GTCCGCGGTCATGGGCAT 62.857 66.667 27.15 0.00 0.00 4.40
527 545 2.839043 TAAACGTCCGCGGTCATGGG 62.839 60.000 27.15 9.28 43.45 4.00
528 546 1.418342 CTAAACGTCCGCGGTCATGG 61.418 60.000 27.15 13.08 43.45 3.66
535 553 1.783434 GTTTCCCTAAACGTCCGCG 59.217 57.895 0.00 0.00 44.93 6.46
560 578 0.539669 AACCCTACTTGGCACTTGGC 60.540 55.000 0.00 0.00 43.74 4.52
562 580 1.981256 ACAACCCTACTTGGCACTTG 58.019 50.000 0.00 0.00 0.00 3.16
564 582 2.616524 TCTACAACCCTACTTGGCACT 58.383 47.619 0.00 0.00 0.00 4.40
565 583 3.270877 CATCTACAACCCTACTTGGCAC 58.729 50.000 0.00 0.00 0.00 5.01
567 585 2.092914 AGCATCTACAACCCTACTTGGC 60.093 50.000 0.00 0.00 0.00 4.52
568 586 3.798202 GAGCATCTACAACCCTACTTGG 58.202 50.000 0.00 0.00 0.00 3.61
613 784 1.421382 GCACGTCGCTACAACCTTTA 58.579 50.000 0.00 0.00 37.77 1.85
671 843 9.886132 AGAACTGTTCTCGGTGTTATTATTATT 57.114 29.630 17.00 0.00 34.07 1.40
673 845 8.922058 GAGAACTGTTCTCGGTGTTATTATTA 57.078 34.615 28.73 0.00 45.85 0.98
723 899 5.305585 AGGTGTTCATGTTTTAGATCGTGT 58.694 37.500 0.00 0.00 0.00 4.49
813 1014 0.729140 GAAATGGCAAACGACGGCAG 60.729 55.000 0.00 0.00 42.76 4.85
991 1195 1.815421 GCCGATTCATCAGCACCGT 60.815 57.895 0.00 0.00 30.73 4.83
1290 1494 4.980805 GTGGAAGTGCCGTCGCCA 62.981 66.667 0.00 0.00 40.66 5.69
1887 2091 3.666253 TCCGCGCTGTCGAAGTGA 61.666 61.111 5.56 0.00 38.83 3.41
2128 2332 6.736853 GTCGATACAACTAACTTGCAACAATC 59.263 38.462 0.00 0.00 32.41 2.67
2129 2333 6.599437 GTCGATACAACTAACTTGCAACAAT 58.401 36.000 0.00 0.00 32.41 2.71
2130 2334 5.332732 CGTCGATACAACTAACTTGCAACAA 60.333 40.000 0.00 0.00 32.41 2.83
2132 2336 4.383649 TCGTCGATACAACTAACTTGCAAC 59.616 41.667 0.00 0.00 32.41 4.17
2133 2337 4.548494 TCGTCGATACAACTAACTTGCAA 58.452 39.130 0.00 0.00 32.41 4.08
2134 2338 4.163458 TCGTCGATACAACTAACTTGCA 57.837 40.909 0.00 0.00 32.41 4.08
2135 2339 3.546670 CCTCGTCGATACAACTAACTTGC 59.453 47.826 0.00 0.00 32.41 4.01
2136 2340 4.557690 CACCTCGTCGATACAACTAACTTG 59.442 45.833 0.00 0.00 35.77 3.16
2137 2341 4.456911 TCACCTCGTCGATACAACTAACTT 59.543 41.667 0.00 0.00 0.00 2.66
2138 2342 4.005650 TCACCTCGTCGATACAACTAACT 58.994 43.478 0.00 0.00 0.00 2.24
2139 2343 4.094212 GTCACCTCGTCGATACAACTAAC 58.906 47.826 0.00 0.00 0.00 2.34
2140 2344 3.181517 CGTCACCTCGTCGATACAACTAA 60.182 47.826 0.00 0.00 0.00 2.24
2141 2345 2.349580 CGTCACCTCGTCGATACAACTA 59.650 50.000 0.00 0.00 0.00 2.24
2142 2346 1.129998 CGTCACCTCGTCGATACAACT 59.870 52.381 0.00 0.00 0.00 3.16
2143 2347 1.531912 CGTCACCTCGTCGATACAAC 58.468 55.000 0.00 0.00 0.00 3.32
2144 2348 0.448990 CCGTCACCTCGTCGATACAA 59.551 55.000 0.00 0.00 0.00 2.41
2145 2349 1.985447 GCCGTCACCTCGTCGATACA 61.985 60.000 0.00 0.00 0.00 2.29
2146 2350 1.298190 GCCGTCACCTCGTCGATAC 60.298 63.158 0.00 0.00 0.00 2.24
2147 2351 0.179076 TAGCCGTCACCTCGTCGATA 60.179 55.000 0.00 0.00 0.00 2.92
2148 2352 1.437772 CTAGCCGTCACCTCGTCGAT 61.438 60.000 0.00 0.00 0.00 3.59
2149 2353 2.046988 TAGCCGTCACCTCGTCGA 60.047 61.111 0.00 0.00 0.00 4.20
2150 2354 1.919956 AACTAGCCGTCACCTCGTCG 61.920 60.000 0.00 0.00 0.00 5.12
2151 2355 0.243095 AAACTAGCCGTCACCTCGTC 59.757 55.000 0.00 0.00 0.00 4.20
2152 2356 0.677842 AAAACTAGCCGTCACCTCGT 59.322 50.000 0.00 0.00 0.00 4.18
2153 2357 1.792006 AAAAACTAGCCGTCACCTCG 58.208 50.000 0.00 0.00 0.00 4.63
2175 2379 4.202070 CGTGGAAACCCTCTTTTGCTAAAA 60.202 41.667 0.00 0.00 0.00 1.52
2176 2380 3.316868 CGTGGAAACCCTCTTTTGCTAAA 59.683 43.478 0.00 0.00 0.00 1.85
2177 2381 2.882137 CGTGGAAACCCTCTTTTGCTAA 59.118 45.455 0.00 0.00 0.00 3.09
2178 2382 2.500229 CGTGGAAACCCTCTTTTGCTA 58.500 47.619 0.00 0.00 0.00 3.49
2179 2383 1.318576 CGTGGAAACCCTCTTTTGCT 58.681 50.000 0.00 0.00 0.00 3.91
2180 2384 0.318699 GCGTGGAAACCCTCTTTTGC 60.319 55.000 0.00 0.00 0.00 3.68
2181 2385 1.001378 CTGCGTGGAAACCCTCTTTTG 60.001 52.381 0.00 0.00 0.00 2.44
2182 2386 1.318576 CTGCGTGGAAACCCTCTTTT 58.681 50.000 0.00 0.00 0.00 2.27
2183 2387 0.182775 ACTGCGTGGAAACCCTCTTT 59.817 50.000 0.00 0.00 0.00 2.52
2184 2388 0.182775 AACTGCGTGGAAACCCTCTT 59.817 50.000 0.00 0.00 0.00 2.85
2185 2389 0.535102 CAACTGCGTGGAAACCCTCT 60.535 55.000 0.00 0.00 0.00 3.69
2186 2390 0.818040 ACAACTGCGTGGAAACCCTC 60.818 55.000 0.00 0.00 0.00 4.30
2187 2391 0.395173 AACAACTGCGTGGAAACCCT 60.395 50.000 0.00 0.00 0.00 4.34
2188 2392 1.310904 TAACAACTGCGTGGAAACCC 58.689 50.000 0.00 0.00 0.00 4.11
2189 2393 2.550606 TCATAACAACTGCGTGGAAACC 59.449 45.455 0.00 0.00 0.00 3.27
2190 2394 3.889196 TCATAACAACTGCGTGGAAAC 57.111 42.857 0.00 0.00 0.00 2.78
2191 2395 3.438781 GGATCATAACAACTGCGTGGAAA 59.561 43.478 0.00 0.00 0.00 3.13
2192 2396 3.006940 GGATCATAACAACTGCGTGGAA 58.993 45.455 0.00 0.00 0.00 3.53
2193 2397 2.627945 GGATCATAACAACTGCGTGGA 58.372 47.619 0.00 0.00 0.00 4.02
2194 2398 1.670811 GGGATCATAACAACTGCGTGG 59.329 52.381 0.00 0.00 0.00 4.94
2195 2399 1.327460 CGGGATCATAACAACTGCGTG 59.673 52.381 0.00 0.00 0.00 5.34
2196 2400 1.206132 TCGGGATCATAACAACTGCGT 59.794 47.619 0.00 0.00 0.00 5.24
2197 2401 1.860950 CTCGGGATCATAACAACTGCG 59.139 52.381 0.00 0.00 0.00 5.18
2198 2402 1.599542 GCTCGGGATCATAACAACTGC 59.400 52.381 0.00 0.00 0.00 4.40
2199 2403 3.185246 AGCTCGGGATCATAACAACTG 57.815 47.619 0.00 0.00 0.00 3.16
2200 2404 3.914426 AAGCTCGGGATCATAACAACT 57.086 42.857 0.00 0.00 0.00 3.16
2201 2405 4.439057 TGTAAGCTCGGGATCATAACAAC 58.561 43.478 0.00 0.00 0.00 3.32
2202 2406 4.746535 TGTAAGCTCGGGATCATAACAA 57.253 40.909 0.00 0.00 0.00 2.83
2203 2407 4.343814 TCATGTAAGCTCGGGATCATAACA 59.656 41.667 0.00 0.00 0.00 2.41
2204 2408 4.883083 TCATGTAAGCTCGGGATCATAAC 58.117 43.478 0.00 0.00 0.00 1.89
2205 2409 4.561530 GCTCATGTAAGCTCGGGATCATAA 60.562 45.833 0.00 0.00 39.27 1.90
2206 2410 3.056536 GCTCATGTAAGCTCGGGATCATA 60.057 47.826 0.00 0.00 39.27 2.15
2207 2411 2.289320 GCTCATGTAAGCTCGGGATCAT 60.289 50.000 0.00 0.00 39.27 2.45
2208 2412 1.069204 GCTCATGTAAGCTCGGGATCA 59.931 52.381 0.00 0.00 39.27 2.92
2209 2413 1.789506 GCTCATGTAAGCTCGGGATC 58.210 55.000 0.00 0.00 39.27 3.36
2210 2414 3.997672 GCTCATGTAAGCTCGGGAT 57.002 52.632 0.00 0.00 39.27 3.85
2217 2421 3.198872 GTCTACCCAAGCTCATGTAAGC 58.801 50.000 0.00 0.00 42.82 3.09
2218 2422 4.081420 ACTGTCTACCCAAGCTCATGTAAG 60.081 45.833 0.00 0.00 0.00 2.34
2219 2423 3.838317 ACTGTCTACCCAAGCTCATGTAA 59.162 43.478 0.00 0.00 0.00 2.41
2220 2424 3.441101 ACTGTCTACCCAAGCTCATGTA 58.559 45.455 0.00 0.00 0.00 2.29
2221 2425 2.234908 GACTGTCTACCCAAGCTCATGT 59.765 50.000 0.00 0.00 0.00 3.21
2222 2426 2.499289 AGACTGTCTACCCAAGCTCATG 59.501 50.000 8.91 0.00 0.00 3.07
2223 2427 2.763448 GAGACTGTCTACCCAAGCTCAT 59.237 50.000 10.86 0.00 0.00 2.90
2224 2428 2.171840 GAGACTGTCTACCCAAGCTCA 58.828 52.381 10.86 0.00 0.00 4.26
2225 2429 2.452505 AGAGACTGTCTACCCAAGCTC 58.547 52.381 10.86 0.00 31.71 4.09
2226 2430 2.614134 AGAGACTGTCTACCCAAGCT 57.386 50.000 10.86 0.00 31.71 3.74
2234 2438 9.447157 GTTCTTTTAGGTAGTAGAGACTGTCTA 57.553 37.037 10.86 0.00 36.28 2.59
2235 2439 7.394077 GGTTCTTTTAGGTAGTAGAGACTGTCT 59.606 40.741 10.66 10.66 36.28 3.41
2236 2440 7.176340 TGGTTCTTTTAGGTAGTAGAGACTGTC 59.824 40.741 0.00 0.00 36.28 3.51
2237 2441 7.008941 TGGTTCTTTTAGGTAGTAGAGACTGT 58.991 38.462 0.00 0.00 36.28 3.55
2238 2442 7.463961 TGGTTCTTTTAGGTAGTAGAGACTG 57.536 40.000 0.00 0.00 36.28 3.51
2239 2443 9.765295 TTATGGTTCTTTTAGGTAGTAGAGACT 57.235 33.333 0.00 0.00 39.92 3.24
2296 2500 2.856988 AAGGGGAGGCGGACCAAA 60.857 61.111 0.00 0.00 39.06 3.28
2315 2519 1.815003 GAGGGTCATGCTGAAAACCTG 59.185 52.381 0.00 0.00 30.57 4.00
2316 2520 1.272147 GGAGGGTCATGCTGAAAACCT 60.272 52.381 0.00 0.00 32.30 3.50
2317 2521 1.177401 GGAGGGTCATGCTGAAAACC 58.823 55.000 0.00 0.00 0.00 3.27
2318 2522 2.087646 GAGGAGGGTCATGCTGAAAAC 58.912 52.381 0.00 0.00 0.00 2.43
2319 2523 1.704628 TGAGGAGGGTCATGCTGAAAA 59.295 47.619 0.00 0.00 0.00 2.29
2320 2524 1.361204 TGAGGAGGGTCATGCTGAAA 58.639 50.000 0.00 0.00 0.00 2.69
2321 2525 1.487976 GATGAGGAGGGTCATGCTGAA 59.512 52.381 0.00 0.00 37.29 3.02
2322 2526 1.126488 GATGAGGAGGGTCATGCTGA 58.874 55.000 0.00 0.00 37.29 4.26
2325 2529 2.653234 ATTGATGAGGAGGGTCATGC 57.347 50.000 0.00 0.00 37.29 4.06
2330 2534 5.672194 ACATACCTAAATTGATGAGGAGGGT 59.328 40.000 0.00 0.00 34.24 4.34
2373 2581 5.359860 GGAAAGGATTGATTACCGGTGAAAT 59.640 40.000 19.93 10.25 0.00 2.17
2378 2586 4.519906 ATGGAAAGGATTGATTACCGGT 57.480 40.909 13.98 13.98 0.00 5.28
2402 2610 0.905337 AGGACGGGAGAGGAAACAGG 60.905 60.000 0.00 0.00 0.00 4.00
2420 2722 1.281925 AAGGGGGTGGGAGCATGTAG 61.282 60.000 0.00 0.00 0.00 2.74
2421 2723 1.230149 AAGGGGGTGGGAGCATGTA 60.230 57.895 0.00 0.00 0.00 2.29
2439 2760 1.414181 GGAGGAGATGGAAATCGCTGA 59.586 52.381 0.00 0.00 0.00 4.26
2476 2797 1.997606 CCGTCCGTTAATTGACTGACC 59.002 52.381 15.91 3.17 32.26 4.02
2488 2809 7.739498 ATAAAGATATTAATTGCCGTCCGTT 57.261 32.000 0.00 0.00 0.00 4.44
2522 2846 7.913789 TGACCTGAATTAGTTGTGGTATAAGT 58.086 34.615 0.00 0.00 0.00 2.24
2535 2859 5.586243 ACCGTTCATGATTGACCTGAATTAG 59.414 40.000 0.00 0.00 36.06 1.73
2554 2878 6.555360 AGGAAGGAATATGAGAGATTACCGTT 59.445 38.462 0.00 0.00 0.00 4.44
2586 2910 3.964031 AGAAGATGCGAAGTAGAGGGAAT 59.036 43.478 0.00 0.00 0.00 3.01
2688 3025 1.166129 CTCCCTCTGAGTTCGAACGA 58.834 55.000 21.87 12.63 36.27 3.85
2801 3138 7.039714 TCCTAAGCAATAGCAGATTCTTCGATA 60.040 37.037 0.00 0.00 45.49 2.92
2837 3176 1.366111 GCTCACGGAAAGCGGCAATA 61.366 55.000 1.45 0.00 0.00 1.90
2870 3209 1.140312 TGGTTGTCAGGAAGAAGGCT 58.860 50.000 0.00 0.00 0.00 4.58
2985 3324 3.001330 GCAGTGGTTACATTAGATCGCAC 59.999 47.826 0.00 0.00 0.00 5.34
2997 3336 6.821665 TCCAACTAATATTCAGCAGTGGTTAC 59.178 38.462 0.00 0.00 0.00 2.50
3006 3345 6.702282 GGTCTGTAGTCCAACTAATATTCAGC 59.298 42.308 0.00 0.00 31.62 4.26
3007 3346 7.147724 TGGGTCTGTAGTCCAACTAATATTCAG 60.148 40.741 0.00 0.00 31.62 3.02
3008 3347 6.670464 TGGGTCTGTAGTCCAACTAATATTCA 59.330 38.462 0.00 0.00 31.62 2.57
3009 3348 7.120923 TGGGTCTGTAGTCCAACTAATATTC 57.879 40.000 0.00 0.00 31.62 1.75
3010 3349 7.691993 ATGGGTCTGTAGTCCAACTAATATT 57.308 36.000 0.00 0.00 31.62 1.28
3011 3350 7.691993 AATGGGTCTGTAGTCCAACTAATAT 57.308 36.000 0.00 0.00 31.62 1.28
3012 3351 7.504926 AAATGGGTCTGTAGTCCAACTAATA 57.495 36.000 0.00 0.00 31.62 0.98
3013 3352 6.388619 AAATGGGTCTGTAGTCCAACTAAT 57.611 37.500 0.00 0.00 31.62 1.73
3014 3353 5.836024 AAATGGGTCTGTAGTCCAACTAA 57.164 39.130 0.00 0.00 31.62 2.24
3015 3354 6.270463 TGTTAAATGGGTCTGTAGTCCAACTA 59.730 38.462 0.00 0.00 33.90 2.24
3016 3355 5.072600 TGTTAAATGGGTCTGTAGTCCAACT 59.927 40.000 0.00 0.00 33.90 3.16
3017 3356 5.310451 TGTTAAATGGGTCTGTAGTCCAAC 58.690 41.667 0.00 0.00 33.90 3.77
3018 3357 5.570205 TGTTAAATGGGTCTGTAGTCCAA 57.430 39.130 0.00 0.00 33.90 3.53
3019 3358 5.570205 TTGTTAAATGGGTCTGTAGTCCA 57.430 39.130 0.00 0.00 34.79 4.02
3020 3359 7.175990 TGAAATTGTTAAATGGGTCTGTAGTCC 59.824 37.037 0.00 0.00 0.00 3.85
3021 3360 8.106247 TGAAATTGTTAAATGGGTCTGTAGTC 57.894 34.615 0.00 0.00 0.00 2.59
3022 3361 7.942341 TCTGAAATTGTTAAATGGGTCTGTAGT 59.058 33.333 0.00 0.00 0.00 2.73
3023 3362 8.335532 TCTGAAATTGTTAAATGGGTCTGTAG 57.664 34.615 0.00 0.00 0.00 2.74
3024 3363 8.698973 TTCTGAAATTGTTAAATGGGTCTGTA 57.301 30.769 0.00 0.00 0.00 2.74
3025 3364 7.595819 TTCTGAAATTGTTAAATGGGTCTGT 57.404 32.000 0.00 0.00 0.00 3.41
3026 3365 8.885494 TTTTCTGAAATTGTTAAATGGGTCTG 57.115 30.769 3.31 0.00 0.00 3.51
3029 3368 9.719355 GGTATTTTCTGAAATTGTTAAATGGGT 57.281 29.630 3.31 0.00 36.82 4.51
3030 3369 9.942850 AGGTATTTTCTGAAATTGTTAAATGGG 57.057 29.630 3.31 0.00 36.82 4.00
3037 3376 8.088365 GGCACTTAGGTATTTTCTGAAATTGTT 58.912 33.333 3.31 0.00 36.82 2.83
3038 3377 7.309805 GGGCACTTAGGTATTTTCTGAAATTGT 60.310 37.037 3.31 0.00 36.82 2.71
3039 3378 7.035612 GGGCACTTAGGTATTTTCTGAAATTG 58.964 38.462 3.31 0.00 36.82 2.32
3040 3379 6.723977 TGGGCACTTAGGTATTTTCTGAAATT 59.276 34.615 3.31 3.36 36.82 1.82
3041 3380 6.252995 TGGGCACTTAGGTATTTTCTGAAAT 58.747 36.000 3.31 0.00 38.88 2.17
3042 3381 5.636123 TGGGCACTTAGGTATTTTCTGAAA 58.364 37.500 0.00 0.00 0.00 2.69
3043 3382 5.249780 TGGGCACTTAGGTATTTTCTGAA 57.750 39.130 0.00 0.00 0.00 3.02
3044 3383 4.919774 TGGGCACTTAGGTATTTTCTGA 57.080 40.909 0.00 0.00 0.00 3.27
3045 3384 4.202050 GCATGGGCACTTAGGTATTTTCTG 60.202 45.833 0.00 0.00 40.72 3.02
3046 3385 3.954258 GCATGGGCACTTAGGTATTTTCT 59.046 43.478 0.00 0.00 40.72 2.52
3047 3386 3.954258 AGCATGGGCACTTAGGTATTTTC 59.046 43.478 0.00 0.00 44.61 2.29
3048 3387 3.701040 CAGCATGGGCACTTAGGTATTTT 59.299 43.478 0.00 0.00 44.61 1.82
3049 3388 3.290710 CAGCATGGGCACTTAGGTATTT 58.709 45.455 0.00 0.00 44.61 1.40
3050 3389 2.242196 ACAGCATGGGCACTTAGGTATT 59.758 45.455 0.00 0.00 43.62 1.89
3051 3390 1.846439 ACAGCATGGGCACTTAGGTAT 59.154 47.619 0.00 0.00 43.62 2.73
3052 3391 1.285280 ACAGCATGGGCACTTAGGTA 58.715 50.000 0.00 0.00 43.62 3.08
3053 3392 1.285280 TACAGCATGGGCACTTAGGT 58.715 50.000 0.00 0.00 43.62 3.08
3054 3393 2.418368 TTACAGCATGGGCACTTAGG 57.582 50.000 0.00 0.00 43.62 2.69
3055 3394 4.989279 AATTTACAGCATGGGCACTTAG 57.011 40.909 0.00 0.00 43.62 2.18
3056 3395 5.949354 ACTTAATTTACAGCATGGGCACTTA 59.051 36.000 0.00 0.00 43.62 2.24
3057 3396 4.772100 ACTTAATTTACAGCATGGGCACTT 59.228 37.500 0.00 0.00 43.62 3.16
3058 3397 4.344104 ACTTAATTTACAGCATGGGCACT 58.656 39.130 0.00 0.00 43.62 4.40
3059 3398 4.718940 ACTTAATTTACAGCATGGGCAC 57.281 40.909 0.00 0.00 43.62 5.01
3060 3399 5.356751 CACTACTTAATTTACAGCATGGGCA 59.643 40.000 0.00 0.00 43.62 5.36
3061 3400 5.221048 CCACTACTTAATTTACAGCATGGGC 60.221 44.000 0.00 0.00 43.62 5.36
3062 3401 5.299279 CCCACTACTTAATTTACAGCATGGG 59.701 44.000 0.00 0.00 43.62 4.00
3063 3402 6.119536 TCCCACTACTTAATTTACAGCATGG 58.880 40.000 0.00 0.00 43.62 3.66
3064 3403 7.624360 TTCCCACTACTTAATTTACAGCATG 57.376 36.000 0.00 0.00 46.00 4.06


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.