Multiple sequence alignment - TraesCS2A01G216300

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS2A01G216300 chr2A 100.000 5281 0 0 1 5281 203259164 203253884 0.000000e+00 9753.0
1 TraesCS2A01G216300 chr2A 89.338 544 45 7 4749 5281 611780437 611780978 0.000000e+00 671.0
2 TraesCS2A01G216300 chr2A 85.740 547 69 4 4743 5281 427585026 427585571 2.130000e-158 569.0
3 TraesCS2A01G216300 chr2A 94.565 92 4 1 72 163 2337401 2337491 1.980000e-29 141.0
4 TraesCS2A01G216300 chr2A 89.091 110 7 5 2913 3020 38968417 38968523 1.190000e-26 132.0
5 TraesCS2A01G216300 chr2A 75.500 200 23 17 1571 1754 203288305 203288116 2.040000e-09 75.0
6 TraesCS2A01G216300 chr2B 92.263 1874 117 15 877 2736 245320568 245318709 0.000000e+00 2632.0
7 TraesCS2A01G216300 chr2B 87.677 1550 134 48 3118 4640 245318400 245316881 0.000000e+00 1751.0
8 TraesCS2A01G216300 chr2B 81.119 286 36 8 152 425 245322924 245322645 4.140000e-51 213.0
9 TraesCS2A01G216300 chr2B 94.505 91 3 2 73 163 134243730 134243642 7.130000e-29 139.0
10 TraesCS2A01G216300 chr2B 76.119 201 22 16 1571 1755 245691189 245690999 1.220000e-11 82.4
11 TraesCS2A01G216300 chr2D 92.301 1195 64 16 869 2042 189298283 189297096 0.000000e+00 1672.0
12 TraesCS2A01G216300 chr2D 94.658 805 35 3 2044 2841 189296930 189296127 0.000000e+00 1242.0
13 TraesCS2A01G216300 chr2D 94.879 703 27 4 2995 3691 189296085 189295386 0.000000e+00 1090.0
14 TraesCS2A01G216300 chr2D 89.974 778 50 17 3690 4454 189295295 189294533 0.000000e+00 979.0
15 TraesCS2A01G216300 chr2D 91.713 543 27 8 4749 5281 335129674 335129140 0.000000e+00 737.0
16 TraesCS2A01G216300 chr2D 91.193 545 40 4 4745 5281 382336523 382337067 0.000000e+00 734.0
17 TraesCS2A01G216300 chr2D 94.215 242 11 2 422 662 189298926 189298687 3.010000e-97 366.0
18 TraesCS2A01G216300 chr2D 91.176 102 6 3 61 161 125502857 125502956 9.230000e-28 135.0
19 TraesCS2A01G216300 chr2D 88.991 109 9 1 4645 4750 289110747 289110639 1.190000e-26 132.0
20 TraesCS2A01G216300 chr2D 91.489 94 4 2 769 861 189298536 189298446 5.550000e-25 126.0
21 TraesCS2A01G216300 chr2D 98.333 60 1 0 644 703 189298668 189298609 7.230000e-19 106.0
22 TraesCS2A01G216300 chr2D 97.959 49 1 0 2866 2914 189296133 189296085 9.420000e-13 86.1
23 TraesCS2A01G216300 chr2D 75.500 200 29 13 1571 1754 189376260 189376065 4.380000e-11 80.5
24 TraesCS2A01G216300 chr2D 82.895 76 13 0 1815 1890 189376001 189375926 9.490000e-08 69.4
25 TraesCS2A01G216300 chr7D 90.433 554 40 8 4739 5281 566445163 566445714 0.000000e+00 717.0
26 TraesCS2A01G216300 chr3D 90.758 541 37 10 4752 5281 578440163 578439625 0.000000e+00 710.0
27 TraesCS2A01G216300 chr3D 89.522 544 45 7 4749 5281 239595028 239595570 0.000000e+00 678.0
28 TraesCS2A01G216300 chr3D 96.591 88 2 1 2913 3000 22679060 22679146 1.530000e-30 145.0
29 TraesCS2A01G216300 chr3D 87.037 108 9 4 4645 4750 141835323 141835219 3.340000e-22 117.0
30 TraesCS2A01G216300 chr7A 87.207 555 47 11 4749 5281 172231071 172230519 1.260000e-170 610.0
31 TraesCS2A01G216300 chr7A 81.801 544 64 23 4754 5281 380855014 380855538 1.760000e-114 424.0
32 TraesCS2A01G216300 chr7A 94.444 90 5 0 72 161 93500536 93500447 7.130000e-29 139.0
33 TraesCS2A01G216300 chr7A 88.119 101 7 1 4655 4750 636067110 636067210 1.200000e-21 115.0
34 TraesCS2A01G216300 chr4B 87.067 549 52 12 4750 5281 281604768 281605314 2.100000e-168 603.0
35 TraesCS2A01G216300 chr4B 85.185 108 13 3 4645 4750 414952606 414952712 2.010000e-19 108.0
36 TraesCS2A01G216300 chr4A 84.712 556 59 16 4749 5281 215247371 215246819 2.800000e-147 532.0
37 TraesCS2A01G216300 chr4A 85.682 440 41 13 4858 5281 701319502 701319069 1.350000e-120 444.0
38 TraesCS2A01G216300 chr4A 94.444 90 4 1 70 159 576036367 576036455 2.560000e-28 137.0
39 TraesCS2A01G216300 chr4A 92.000 100 4 3 2910 3007 634348179 634348276 2.560000e-28 137.0
40 TraesCS2A01G216300 chr5A 81.455 550 69 21 4749 5281 455472564 455473097 2.270000e-113 420.0
41 TraesCS2A01G216300 chr5A 78.481 237 45 6 3739 3972 546306463 546306230 3.290000e-32 150.0
42 TraesCS2A01G216300 chr5A 76.080 301 54 12 4349 4643 130083240 130082952 1.980000e-29 141.0
43 TraesCS2A01G216300 chr5A 86.275 102 13 1 4650 4750 428272849 428272748 5.590000e-20 110.0
44 TraesCS2A01G216300 chr1D 81.530 536 72 15 4758 5279 43200718 43201240 2.940000e-112 416.0
45 TraesCS2A01G216300 chr1D 87.892 223 27 0 2486 2708 481482003 481482225 4.060000e-66 263.0
46 TraesCS2A01G216300 chr1D 87.892 223 24 1 2504 2723 481558033 481557811 5.250000e-65 259.0
47 TraesCS2A01G216300 chr1D 85.259 251 35 2 3174 3423 481557628 481557379 1.890000e-64 257.0
48 TraesCS2A01G216300 chr1D 83.665 251 39 2 3174 3423 481482476 481482725 8.840000e-58 235.0
49 TraesCS2A01G216300 chr1D 93.617 94 5 1 2913 3006 340456244 340456152 7.130000e-29 139.0
50 TraesCS2A01G216300 chr1D 94.444 90 4 1 72 161 191339205 191339117 2.560000e-28 137.0
51 TraesCS2A01G216300 chr1D 93.478 92 5 1 70 161 154902161 154902251 9.230000e-28 135.0
52 TraesCS2A01G216300 chr3A 88.889 279 23 2 5011 5281 340833267 340833545 2.360000e-88 337.0
53 TraesCS2A01G216300 chr1B 74.852 676 125 28 2078 2721 670154953 670154291 1.130000e-66 265.0
54 TraesCS2A01G216300 chr1B 87.069 116 13 2 2902 3017 603510540 603510653 4.290000e-26 130.0
55 TraesCS2A01G216300 chr1A 83.665 251 39 2 3174 3423 578015621 578015372 8.840000e-58 235.0
56 TraesCS2A01G216300 chr1A 87.850 107 12 1 4645 4750 140752775 140752669 2.000000e-24 124.0
57 TraesCS2A01G216300 chrUn 82.400 250 42 2 3175 3423 34767690 34767938 3.200000e-52 217.0
58 TraesCS2A01G216300 chrUn 86.538 104 13 1 4648 4750 75255940 75255837 4.320000e-21 113.0
59 TraesCS2A01G216300 chr6B 95.699 93 3 1 2913 3005 458503484 458503575 1.180000e-31 148.0
60 TraesCS2A01G216300 chr5D 94.624 93 4 1 2913 3005 128577588 128577679 5.510000e-30 143.0
61 TraesCS2A01G216300 chr5D 86.111 108 10 4 4645 4750 321680504 321680608 1.550000e-20 111.0
62 TraesCS2A01G216300 chr5B 94.624 93 4 1 2913 3005 140965930 140966021 5.510000e-30 143.0
63 TraesCS2A01G216300 chr5B 91.346 104 6 3 2910 3010 123689222 123689119 7.130000e-29 139.0
64 TraesCS2A01G216300 chr3B 91.176 102 6 3 73 174 251277924 251277826 9.230000e-28 135.0
65 TraesCS2A01G216300 chr3B 91.837 98 7 1 66 163 459410200 459410296 9.230000e-28 135.0
66 TraesCS2A01G216300 chr3B 100.000 29 0 0 4352 4380 664174 664146 3.000000e-03 54.7
67 TraesCS2A01G216300 chr6D 88.889 108 10 1 4645 4750 18905424 18905531 1.190000e-26 132.0
68 TraesCS2A01G216300 chr6D 75.265 283 54 13 4361 4638 251240039 251240310 2.580000e-23 121.0
69 TraesCS2A01G216300 chr6A 75.972 283 52 12 4361 4638 344180903 344180632 1.190000e-26 132.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS2A01G216300 chr2A 203253884 203259164 5280 True 9753.0000 9753 100.000000 1 5281 1 chr2A.!!$R1 5280
1 TraesCS2A01G216300 chr2A 611780437 611780978 541 False 671.0000 671 89.338000 4749 5281 1 chr2A.!!$F4 532
2 TraesCS2A01G216300 chr2A 427585026 427585571 545 False 569.0000 569 85.740000 4743 5281 1 chr2A.!!$F3 538
3 TraesCS2A01G216300 chr2B 245316881 245322924 6043 True 1532.0000 2632 87.019667 152 4640 3 chr2B.!!$R3 4488
4 TraesCS2A01G216300 chr2D 335129140 335129674 534 True 737.0000 737 91.713000 4749 5281 1 chr2D.!!$R2 532
5 TraesCS2A01G216300 chr2D 382336523 382337067 544 False 734.0000 734 91.193000 4745 5281 1 chr2D.!!$F2 536
6 TraesCS2A01G216300 chr2D 189294533 189298926 4393 True 708.3875 1672 94.226000 422 4454 8 chr2D.!!$R3 4032
7 TraesCS2A01G216300 chr7D 566445163 566445714 551 False 717.0000 717 90.433000 4739 5281 1 chr7D.!!$F1 542
8 TraesCS2A01G216300 chr3D 578439625 578440163 538 True 710.0000 710 90.758000 4752 5281 1 chr3D.!!$R2 529
9 TraesCS2A01G216300 chr3D 239595028 239595570 542 False 678.0000 678 89.522000 4749 5281 1 chr3D.!!$F2 532
10 TraesCS2A01G216300 chr7A 172230519 172231071 552 True 610.0000 610 87.207000 4749 5281 1 chr7A.!!$R2 532
11 TraesCS2A01G216300 chr7A 380855014 380855538 524 False 424.0000 424 81.801000 4754 5281 1 chr7A.!!$F1 527
12 TraesCS2A01G216300 chr4B 281604768 281605314 546 False 603.0000 603 87.067000 4750 5281 1 chr4B.!!$F1 531
13 TraesCS2A01G216300 chr4A 215246819 215247371 552 True 532.0000 532 84.712000 4749 5281 1 chr4A.!!$R1 532
14 TraesCS2A01G216300 chr5A 455472564 455473097 533 False 420.0000 420 81.455000 4749 5281 1 chr5A.!!$F1 532
15 TraesCS2A01G216300 chr1D 43200718 43201240 522 False 416.0000 416 81.530000 4758 5279 1 chr1D.!!$F1 521
16 TraesCS2A01G216300 chr1D 481557379 481558033 654 True 258.0000 259 86.575500 2504 3423 2 chr1D.!!$R3 919
17 TraesCS2A01G216300 chr1D 481482003 481482725 722 False 249.0000 263 85.778500 2486 3423 2 chr1D.!!$F3 937
18 TraesCS2A01G216300 chr1B 670154291 670154953 662 True 265.0000 265 74.852000 2078 2721 1 chr1B.!!$R1 643

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
131 132 0.035152 CATTACACCCAGCCTCTGCA 60.035 55.0 0.00 0.00 41.13 4.41 F
769 1070 0.035152 AATCTCGCAACCTCCATGCA 60.035 50.0 0.00 0.00 44.01 3.96 F
771 1072 0.035152 TCTCGCAACCTCCATGCATT 60.035 50.0 0.00 0.00 44.01 3.56 F
775 1076 0.108520 GCAACCTCCATGCATTGTGG 60.109 55.0 15.34 15.34 43.29 4.17 F
1810 3641 0.179009 CAAGCCCCGATGGATCATGT 60.179 55.0 0.00 0.00 35.39 3.21 F
2844 4893 0.105224 TGCAGCAAAGCAAAGCATGT 59.895 45.0 0.00 0.00 42.46 3.21 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2496 4523 0.107017 TTTCCTGCCCATCTGCTAGC 60.107 55.000 8.10 8.10 0.00 3.42 R
2796 4831 4.987963 ATGTTCTCATCCATGGCAGATA 57.012 40.909 6.96 0.00 0.00 1.98 R
2799 4834 3.697542 TCAAATGTTCTCATCCATGGCAG 59.302 43.478 6.96 2.69 32.56 4.85 R
2803 4838 6.038936 TGCATAGTCAAATGTTCTCATCCATG 59.961 38.462 0.00 0.00 32.56 3.66 R
3485 5623 0.392193 ACCTCTGCAAAGGATGAGCG 60.392 55.000 14.57 0.00 38.87 5.03 R
4644 6890 0.036306 CCAAGACCCAACCGTAAGCT 59.964 55.000 0.00 0.00 0.00 3.74 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
33 34 9.775854 AAGAGATATTAGGAAATGTGACTGATG 57.224 33.333 0.00 0.00 0.00 3.07
34 35 7.877097 AGAGATATTAGGAAATGTGACTGATGC 59.123 37.037 0.00 0.00 0.00 3.91
35 36 7.743749 AGATATTAGGAAATGTGACTGATGCT 58.256 34.615 0.00 0.00 0.00 3.79
36 37 7.877097 AGATATTAGGAAATGTGACTGATGCTC 59.123 37.037 0.00 0.00 0.00 4.26
37 38 2.996631 AGGAAATGTGACTGATGCTCC 58.003 47.619 0.00 0.00 0.00 4.70
38 39 2.575279 AGGAAATGTGACTGATGCTCCT 59.425 45.455 0.00 0.00 0.00 3.69
39 40 2.941720 GGAAATGTGACTGATGCTCCTC 59.058 50.000 0.00 0.00 0.00 3.71
40 41 2.306341 AATGTGACTGATGCTCCTCG 57.694 50.000 0.00 0.00 0.00 4.63
41 42 1.189752 ATGTGACTGATGCTCCTCGT 58.810 50.000 0.00 0.00 0.00 4.18
42 43 0.244721 TGTGACTGATGCTCCTCGTG 59.755 55.000 0.00 0.00 0.00 4.35
43 44 0.528017 GTGACTGATGCTCCTCGTGA 59.472 55.000 0.00 0.00 0.00 4.35
44 45 1.135915 GTGACTGATGCTCCTCGTGAT 59.864 52.381 0.00 0.00 0.00 3.06
45 46 1.406898 TGACTGATGCTCCTCGTGATC 59.593 52.381 0.00 0.00 0.00 2.92
46 47 0.383590 ACTGATGCTCCTCGTGATCG 59.616 55.000 0.00 0.00 38.55 3.69
47 48 0.383590 CTGATGCTCCTCGTGATCGT 59.616 55.000 0.00 0.00 38.33 3.73
48 49 1.604278 CTGATGCTCCTCGTGATCGTA 59.396 52.381 0.00 0.00 38.33 3.43
49 50 2.021457 TGATGCTCCTCGTGATCGTAA 58.979 47.619 0.00 0.00 38.33 3.18
50 51 2.623416 TGATGCTCCTCGTGATCGTAAT 59.377 45.455 0.00 0.00 38.33 1.89
51 52 2.776312 TGCTCCTCGTGATCGTAATC 57.224 50.000 0.00 0.00 38.33 1.75
52 53 2.021457 TGCTCCTCGTGATCGTAATCA 58.979 47.619 0.00 0.00 39.63 2.57
53 54 2.425668 TGCTCCTCGTGATCGTAATCAA 59.574 45.455 0.00 0.00 43.42 2.57
54 55 3.068165 TGCTCCTCGTGATCGTAATCAAT 59.932 43.478 0.00 0.00 43.42 2.57
55 56 4.051922 GCTCCTCGTGATCGTAATCAATT 58.948 43.478 0.00 0.00 43.42 2.32
56 57 5.220381 GCTCCTCGTGATCGTAATCAATTA 58.780 41.667 0.00 0.00 43.42 1.40
57 58 5.343593 GCTCCTCGTGATCGTAATCAATTAG 59.656 44.000 0.00 0.00 43.42 1.73
58 59 6.387041 TCCTCGTGATCGTAATCAATTAGT 57.613 37.500 0.00 0.00 43.42 2.24
59 60 6.802608 TCCTCGTGATCGTAATCAATTAGTT 58.197 36.000 0.00 0.00 43.42 2.24
60 61 7.262772 TCCTCGTGATCGTAATCAATTAGTTT 58.737 34.615 0.00 0.00 43.42 2.66
61 62 8.407832 TCCTCGTGATCGTAATCAATTAGTTTA 58.592 33.333 0.00 0.00 43.42 2.01
62 63 9.193133 CCTCGTGATCGTAATCAATTAGTTTAT 57.807 33.333 0.00 0.00 43.42 1.40
86 87 7.631717 TTTCAACACATTTTTAAAAAGGGGG 57.368 32.000 26.13 19.40 37.40 5.40
87 88 5.126779 TCAACACATTTTTAAAAAGGGGGC 58.873 37.500 26.13 0.00 37.40 5.80
88 89 3.734463 ACACATTTTTAAAAAGGGGGCG 58.266 40.909 26.13 15.06 37.40 6.13
89 90 2.482336 CACATTTTTAAAAAGGGGGCGC 59.518 45.455 24.41 0.00 34.27 6.53
90 91 2.370519 ACATTTTTAAAAAGGGGGCGCT 59.629 40.909 24.41 4.58 34.27 5.92
91 92 3.181449 ACATTTTTAAAAAGGGGGCGCTT 60.181 39.130 24.41 3.95 34.27 4.68
92 93 3.562343 TTTTTAAAAAGGGGGCGCTTT 57.438 38.095 7.64 0.66 0.00 3.51
93 94 4.684484 TTTTTAAAAAGGGGGCGCTTTA 57.316 36.364 7.64 0.00 0.00 1.85
94 95 4.893829 TTTTAAAAAGGGGGCGCTTTAT 57.106 36.364 7.64 0.00 0.00 1.40
95 96 4.893829 TTTAAAAAGGGGGCGCTTTATT 57.106 36.364 7.64 0.00 0.00 1.40
96 97 5.997384 TTTAAAAAGGGGGCGCTTTATTA 57.003 34.783 7.64 0.00 0.00 0.98
97 98 3.880047 AAAAAGGGGGCGCTTTATTAC 57.120 42.857 7.64 0.00 0.00 1.89
98 99 2.820728 AAAGGGGGCGCTTTATTACT 57.179 45.000 7.64 0.00 0.00 2.24
99 100 2.820728 AAGGGGGCGCTTTATTACTT 57.179 45.000 7.64 0.00 0.00 2.24
100 101 3.937778 AAGGGGGCGCTTTATTACTTA 57.062 42.857 7.64 0.00 0.00 2.24
101 102 3.937778 AGGGGGCGCTTTATTACTTAA 57.062 42.857 7.64 0.00 0.00 1.85
102 103 4.239428 AGGGGGCGCTTTATTACTTAAA 57.761 40.909 7.64 0.00 0.00 1.52
103 104 4.602107 AGGGGGCGCTTTATTACTTAAAA 58.398 39.130 7.64 0.00 29.52 1.52
104 105 4.643334 AGGGGGCGCTTTATTACTTAAAAG 59.357 41.667 7.64 0.00 36.09 2.27
105 106 4.202080 GGGGGCGCTTTATTACTTAAAAGG 60.202 45.833 7.64 0.00 34.07 3.11
106 107 4.400251 GGGGCGCTTTATTACTTAAAAGGT 59.600 41.667 7.64 0.00 34.07 3.50
107 108 5.105635 GGGGCGCTTTATTACTTAAAAGGTT 60.106 40.000 7.64 0.00 34.07 3.50
108 109 6.392354 GGGCGCTTTATTACTTAAAAGGTTT 58.608 36.000 7.64 0.00 34.07 3.27
109 110 7.362834 GGGGCGCTTTATTACTTAAAAGGTTTA 60.363 37.037 7.64 0.00 34.07 2.01
110 111 8.028354 GGGCGCTTTATTACTTAAAAGGTTTAA 58.972 33.333 7.64 0.00 34.07 1.52
111 112 9.069078 GGCGCTTTATTACTTAAAAGGTTTAAG 57.931 33.333 7.64 15.59 37.84 1.85
112 113 8.581263 GCGCTTTATTACTTAAAAGGTTTAAGC 58.419 33.333 16.65 0.00 35.88 3.09
113 114 9.615295 CGCTTTATTACTTAAAAGGTTTAAGCA 57.385 29.630 16.65 5.22 35.88 3.91
124 125 3.503827 GGTTTAAGCATTACACCCAGC 57.496 47.619 0.00 0.00 43.82 4.85
125 126 2.165641 GGTTTAAGCATTACACCCAGCC 59.834 50.000 0.00 0.00 43.82 4.85
126 127 3.089284 GTTTAAGCATTACACCCAGCCT 58.911 45.455 0.00 0.00 0.00 4.58
127 128 2.710096 TAAGCATTACACCCAGCCTC 57.290 50.000 0.00 0.00 0.00 4.70
128 129 0.995024 AAGCATTACACCCAGCCTCT 59.005 50.000 0.00 0.00 0.00 3.69
129 130 0.254178 AGCATTACACCCAGCCTCTG 59.746 55.000 0.00 0.00 0.00 3.35
130 131 1.379642 GCATTACACCCAGCCTCTGC 61.380 60.000 0.00 0.00 37.95 4.26
131 132 0.035152 CATTACACCCAGCCTCTGCA 60.035 55.000 0.00 0.00 41.13 4.41
132 133 0.921896 ATTACACCCAGCCTCTGCAT 59.078 50.000 0.00 0.00 41.13 3.96
133 134 1.578897 TTACACCCAGCCTCTGCATA 58.421 50.000 0.00 0.00 41.13 3.14
134 135 1.578897 TACACCCAGCCTCTGCATAA 58.421 50.000 0.00 0.00 41.13 1.90
135 136 0.254178 ACACCCAGCCTCTGCATAAG 59.746 55.000 0.00 0.00 41.13 1.73
136 137 0.254178 CACCCAGCCTCTGCATAAGT 59.746 55.000 0.00 0.00 41.13 2.24
137 138 1.486310 CACCCAGCCTCTGCATAAGTA 59.514 52.381 0.00 0.00 41.13 2.24
138 139 2.092968 CACCCAGCCTCTGCATAAGTAA 60.093 50.000 0.00 0.00 41.13 2.24
139 140 2.171448 ACCCAGCCTCTGCATAAGTAAG 59.829 50.000 0.00 0.00 41.13 2.34
140 141 2.435805 CCCAGCCTCTGCATAAGTAAGA 59.564 50.000 0.00 0.00 41.13 2.10
141 142 3.072184 CCCAGCCTCTGCATAAGTAAGAT 59.928 47.826 0.00 0.00 41.13 2.40
142 143 4.063689 CCAGCCTCTGCATAAGTAAGATG 58.936 47.826 0.00 0.00 41.13 2.90
151 152 4.542662 CATAAGTAAGATGCACACAGCC 57.457 45.455 0.00 0.00 44.83 4.85
152 153 2.566833 AAGTAAGATGCACACAGCCA 57.433 45.000 0.00 0.00 44.83 4.75
153 154 2.566833 AGTAAGATGCACACAGCCAA 57.433 45.000 0.00 0.00 44.83 4.52
154 155 2.862541 AGTAAGATGCACACAGCCAAA 58.137 42.857 0.00 0.00 44.83 3.28
155 156 2.554032 AGTAAGATGCACACAGCCAAAC 59.446 45.455 0.00 0.00 44.83 2.93
156 157 1.401761 AAGATGCACACAGCCAAACA 58.598 45.000 0.00 0.00 44.83 2.83
157 158 1.401761 AGATGCACACAGCCAAACAA 58.598 45.000 0.00 0.00 44.83 2.83
158 159 1.755959 AGATGCACACAGCCAAACAAA 59.244 42.857 0.00 0.00 44.83 2.83
159 160 2.129607 GATGCACACAGCCAAACAAAG 58.870 47.619 0.00 0.00 44.83 2.77
160 161 0.894141 TGCACACAGCCAAACAAAGT 59.106 45.000 0.00 0.00 44.83 2.66
161 162 1.274728 TGCACACAGCCAAACAAAGTT 59.725 42.857 0.00 0.00 44.83 2.66
162 163 1.926510 GCACACAGCCAAACAAAGTTC 59.073 47.619 0.00 0.00 37.23 3.01
163 164 2.673610 GCACACAGCCAAACAAAGTTCA 60.674 45.455 0.00 0.00 37.23 3.18
164 165 3.784338 CACACAGCCAAACAAAGTTCAT 58.216 40.909 0.00 0.00 0.00 2.57
165 166 4.183101 CACACAGCCAAACAAAGTTCATT 58.817 39.130 0.00 0.00 0.00 2.57
166 167 4.630940 CACACAGCCAAACAAAGTTCATTT 59.369 37.500 0.00 0.00 0.00 2.32
167 168 5.809562 CACACAGCCAAACAAAGTTCATTTA 59.190 36.000 0.00 0.00 0.00 1.40
168 169 5.810074 ACACAGCCAAACAAAGTTCATTTAC 59.190 36.000 0.00 0.00 0.00 2.01
169 170 5.234116 CACAGCCAAACAAAGTTCATTTACC 59.766 40.000 0.00 0.00 0.00 2.85
170 171 4.749598 CAGCCAAACAAAGTTCATTTACCC 59.250 41.667 0.00 0.00 0.00 3.69
171 172 4.407296 AGCCAAACAAAGTTCATTTACCCA 59.593 37.500 0.00 0.00 0.00 4.51
172 173 4.509970 GCCAAACAAAGTTCATTTACCCAC 59.490 41.667 0.00 0.00 0.00 4.61
216 217 2.193447 AGCTATACAATCGTGTGCGTG 58.807 47.619 0.00 0.00 38.82 5.34
219 220 3.362014 GCTATACAATCGTGTGCGTGATG 60.362 47.826 0.00 0.00 38.82 3.07
220 221 2.073117 TACAATCGTGTGCGTGATGT 57.927 45.000 0.00 0.00 38.82 3.06
221 222 1.225855 ACAATCGTGTGCGTGATGTT 58.774 45.000 0.00 0.00 36.31 2.71
222 223 2.409012 ACAATCGTGTGCGTGATGTTA 58.591 42.857 0.00 0.00 36.31 2.41
223 224 3.000041 ACAATCGTGTGCGTGATGTTAT 59.000 40.909 0.00 0.00 36.31 1.89
224 225 3.062099 ACAATCGTGTGCGTGATGTTATC 59.938 43.478 0.00 0.00 36.31 1.75
225 226 2.355717 TCGTGTGCGTGATGTTATCA 57.644 45.000 0.00 0.00 39.49 2.15
226 227 2.887337 TCGTGTGCGTGATGTTATCAT 58.113 42.857 0.00 0.00 42.04 2.45
227 228 4.035278 TCGTGTGCGTGATGTTATCATA 57.965 40.909 0.00 0.00 42.04 2.15
232 233 5.520288 GTGTGCGTGATGTTATCATAGACTT 59.480 40.000 0.00 0.00 42.04 3.01
235 236 7.595130 TGTGCGTGATGTTATCATAGACTTATC 59.405 37.037 0.00 0.00 42.04 1.75
240 241 7.595130 GTGATGTTATCATAGACTTATCGCACA 59.405 37.037 0.00 0.00 42.04 4.57
241 242 8.306761 TGATGTTATCATAGACTTATCGCACAT 58.693 33.333 0.00 0.00 33.59 3.21
244 245 4.320608 TCATAGACTTATCGCACATGCA 57.679 40.909 4.49 0.00 42.21 3.96
247 248 3.183793 AGACTTATCGCACATGCATCA 57.816 42.857 0.00 0.00 42.21 3.07
264 265 3.577649 ATCAGTCGATGAAGAACGTGT 57.422 42.857 0.00 0.00 42.53 4.49
265 266 4.696899 ATCAGTCGATGAAGAACGTGTA 57.303 40.909 0.00 0.00 42.53 2.90
266 267 4.492791 TCAGTCGATGAAGAACGTGTAA 57.507 40.909 0.00 0.00 34.02 2.41
269 270 4.857037 CAGTCGATGAAGAACGTGTAATCA 59.143 41.667 0.00 0.00 0.00 2.57
270 271 4.857588 AGTCGATGAAGAACGTGTAATCAC 59.142 41.667 0.00 0.00 40.79 3.06
271 272 4.619760 GTCGATGAAGAACGTGTAATCACA 59.380 41.667 0.00 0.00 44.02 3.58
295 304 3.322828 AGAGTTCAGCCATTGCACATTTT 59.677 39.130 0.00 0.00 41.13 1.82
299 308 5.640357 AGTTCAGCCATTGCACATTTTATTG 59.360 36.000 0.00 0.00 41.13 1.90
317 326 2.647529 TGTCTGGCACGTACATACAG 57.352 50.000 6.56 3.18 0.00 2.74
320 329 2.666508 GTCTGGCACGTACATACAGTTG 59.333 50.000 0.00 0.00 0.00 3.16
323 332 2.235155 TGGCACGTACATACAGTTGGAT 59.765 45.455 0.00 0.00 0.00 3.41
325 334 3.517602 GCACGTACATACAGTTGGATGA 58.482 45.455 11.21 0.00 0.00 2.92
333 344 5.118990 ACATACAGTTGGATGATAGTGTGC 58.881 41.667 11.21 0.00 0.00 4.57
345 356 3.704061 TGATAGTGTGCTATAGGTGTGCA 59.296 43.478 1.04 0.00 37.99 4.57
403 414 3.866651 CTTAGACTTGGATGGTGGTCAG 58.133 50.000 0.00 0.00 0.00 3.51
406 417 0.987294 ACTTGGATGGTGGTCAGAGG 59.013 55.000 0.00 0.00 0.00 3.69
408 419 2.184020 TTGGATGGTGGTCAGAGGCG 62.184 60.000 0.00 0.00 0.00 5.52
411 422 2.914777 GATGGTGGTCAGAGGCGCTC 62.915 65.000 7.64 2.67 0.00 5.03
452 524 3.055458 TCAACGGCTTCATCCACAGATTA 60.055 43.478 0.00 0.00 0.00 1.75
461 533 6.238593 GCTTCATCCACAGATTAAAAGCCTAG 60.239 42.308 0.00 0.00 35.68 3.02
514 586 1.814772 TTTGGGTCAAAGGCGGCATG 61.815 55.000 13.08 10.26 0.00 4.06
594 667 0.586802 GGAAAATCCGCAGCCGTATC 59.413 55.000 0.00 0.00 0.00 2.24
621 694 3.645975 CACGCACGGGGTGTCAAC 61.646 66.667 11.28 0.00 40.76 3.18
634 707 5.345702 GGGGTGTCAACAAGTCTTAAAAAC 58.654 41.667 0.00 0.00 0.00 2.43
654 727 4.771590 ACGCAGTGACAAAATCATCAAT 57.228 36.364 0.00 0.00 42.51 2.57
740 1041 3.586543 TGGACCTCCATTGTGGCA 58.413 55.556 0.00 0.00 42.01 4.92
741 1042 1.849832 TGGACCTCCATTGTGGCAA 59.150 52.632 0.00 0.00 42.01 4.52
743 1044 0.038166 GGACCTCCATTGTGGCAAGA 59.962 55.000 0.00 0.00 37.47 3.02
745 1046 1.003580 GACCTCCATTGTGGCAAGAGA 59.996 52.381 0.00 0.00 37.47 3.10
747 1048 1.271543 CCTCCATTGTGGCAAGAGACA 60.272 52.381 0.00 0.00 37.47 3.41
754 1055 2.086054 GTGGCAAGAGACACGAATCT 57.914 50.000 0.00 0.00 45.35 2.40
755 1056 1.996191 GTGGCAAGAGACACGAATCTC 59.004 52.381 11.28 11.28 45.35 2.75
762 1063 0.603569 AGACACGAATCTCGCAACCT 59.396 50.000 0.00 0.00 45.12 3.50
763 1064 0.992802 GACACGAATCTCGCAACCTC 59.007 55.000 0.00 0.00 45.12 3.85
765 1066 0.389817 CACGAATCTCGCAACCTCCA 60.390 55.000 0.00 0.00 45.12 3.86
766 1067 0.537188 ACGAATCTCGCAACCTCCAT 59.463 50.000 0.00 0.00 45.12 3.41
767 1068 0.933097 CGAATCTCGCAACCTCCATG 59.067 55.000 0.00 0.00 31.14 3.66
768 1069 0.659957 GAATCTCGCAACCTCCATGC 59.340 55.000 0.00 0.00 40.41 4.06
769 1070 0.035152 AATCTCGCAACCTCCATGCA 60.035 50.000 0.00 0.00 44.01 3.96
770 1071 0.182061 ATCTCGCAACCTCCATGCAT 59.818 50.000 0.00 0.00 44.01 3.96
771 1072 0.035152 TCTCGCAACCTCCATGCATT 60.035 50.000 0.00 0.00 44.01 3.56
773 1074 0.608856 TCGCAACCTCCATGCATTGT 60.609 50.000 0.00 0.00 44.01 2.71
774 1075 0.457166 CGCAACCTCCATGCATTGTG 60.457 55.000 0.00 0.00 44.01 3.33
775 1076 0.108520 GCAACCTCCATGCATTGTGG 60.109 55.000 15.34 15.34 43.29 4.17
784 1085 1.108776 ATGCATTGTGGGTCATGAGC 58.891 50.000 16.65 16.65 0.00 4.26
819 1120 2.902705 ACAGAAGTTGCGGTTCAGTA 57.097 45.000 0.00 0.00 0.00 2.74
821 1122 2.069273 CAGAAGTTGCGGTTCAGTAGG 58.931 52.381 0.00 0.00 0.00 3.18
822 1123 0.796927 GAAGTTGCGGTTCAGTAGGC 59.203 55.000 0.00 0.00 0.00 3.93
845 2501 1.087501 GGCCGATCAACTTTGACTCC 58.912 55.000 0.00 0.00 40.49 3.85
857 2513 5.584551 ACTTTGACTCCAAAAGGAGGTAT 57.415 39.130 15.36 0.00 41.28 2.73
869 2525 1.883084 GAGGTATCCACTTGCGCGG 60.883 63.158 8.83 0.00 0.00 6.46
871 2527 1.142314 GGTATCCACTTGCGCGGTA 59.858 57.895 8.83 0.00 0.00 4.02
872 2528 0.874607 GGTATCCACTTGCGCGGTAG 60.875 60.000 8.83 2.29 0.00 3.18
873 2529 0.874607 GTATCCACTTGCGCGGTAGG 60.875 60.000 8.83 8.83 0.00 3.18
874 2530 2.638330 TATCCACTTGCGCGGTAGGC 62.638 60.000 8.83 0.00 38.69 3.93
918 2734 2.363018 CGGGTCAGGCTCAGGAGA 60.363 66.667 0.00 0.00 0.00 3.71
923 2739 1.338579 GGTCAGGCTCAGGAGAAACTG 60.339 57.143 0.00 5.32 39.84 3.16
928 2744 1.078848 CTCAGGAGAAACTGGGCCG 60.079 63.158 0.00 0.00 38.98 6.13
1031 2847 0.249447 CGATGCTTCTGGCCGTCATA 60.249 55.000 0.00 0.00 40.92 2.15
1443 3259 2.497107 TACGTACGGCCTATTTCAGC 57.503 50.000 21.06 0.00 0.00 4.26
1503 3334 3.487120 ACTAATGGGATTTCTACGGCC 57.513 47.619 0.00 0.00 0.00 6.13
1605 3436 3.771160 ACGTCCATCCTCACCGCC 61.771 66.667 0.00 0.00 0.00 6.13
1810 3641 0.179009 CAAGCCCCGATGGATCATGT 60.179 55.000 0.00 0.00 35.39 3.21
1820 3651 3.691118 CGATGGATCATGTCTTTTGTGGT 59.309 43.478 0.00 0.00 0.00 4.16
1930 3761 3.027412 TCTCCATCTGTAACTCCAGAGC 58.973 50.000 0.00 0.00 44.25 4.09
2013 3844 3.083293 TGCTATCATTTGTCTGCTTGCA 58.917 40.909 0.00 0.00 0.00 4.08
2071 4071 6.263617 GGTTAAGGTTCTTGTTTGGTGTATGA 59.736 38.462 0.00 0.00 0.00 2.15
2315 4323 4.503643 CCAGCATTCAAGAAAATTGTGGGT 60.504 41.667 0.00 0.00 0.00 4.51
2340 4348 5.742453 GCACAATGCATGATCTTTGAGTTAG 59.258 40.000 0.00 0.00 44.26 2.34
2342 4350 5.416639 ACAATGCATGATCTTTGAGTTAGCA 59.583 36.000 0.00 0.00 0.00 3.49
2381 4389 6.120378 ACTGAAAACTTCTCGGAAAAGAAC 57.880 37.500 0.00 0.00 32.03 3.01
2434 4442 7.041644 TGTGTACAAGGTGAGTAAATAAGCAAC 60.042 37.037 0.00 0.00 0.00 4.17
2438 4446 6.490040 ACAAGGTGAGTAAATAAGCAACACAT 59.510 34.615 0.00 0.00 0.00 3.21
2463 4473 3.447586 CCGGGTGGGTGATATCAGTATAG 59.552 52.174 5.42 0.00 0.00 1.31
2496 4523 1.457346 GAAGACTGTTGCAGGGGATG 58.543 55.000 1.08 0.00 35.51 3.51
2757 4787 2.677836 GAGCTACAAATCATTGCACGGA 59.322 45.455 0.00 0.00 40.34 4.69
2844 4893 0.105224 TGCAGCAAAGCAAAGCATGT 59.895 45.000 0.00 0.00 42.46 3.21
2845 4894 0.511221 GCAGCAAAGCAAAGCATGTG 59.489 50.000 0.00 0.00 0.00 3.21
2849 4898 3.991773 CAGCAAAGCAAAGCATGTGTAAT 59.008 39.130 0.00 0.00 0.00 1.89
2851 4900 5.287752 CAGCAAAGCAAAGCATGTGTAATAG 59.712 40.000 0.00 0.00 0.00 1.73
2856 4905 6.573664 AGCAAAGCATGTGTAATAGTGAAA 57.426 33.333 0.00 0.00 0.00 2.69
2857 4906 7.161773 AGCAAAGCATGTGTAATAGTGAAAT 57.838 32.000 0.00 0.00 0.00 2.17
2858 4907 7.031372 AGCAAAGCATGTGTAATAGTGAAATG 58.969 34.615 0.00 0.00 0.00 2.32
2859 4908 7.028962 GCAAAGCATGTGTAATAGTGAAATGA 58.971 34.615 0.00 0.00 0.00 2.57
2860 4909 7.541783 GCAAAGCATGTGTAATAGTGAAATGAA 59.458 33.333 0.00 0.00 0.00 2.57
2861 4910 9.577110 CAAAGCATGTGTAATAGTGAAATGAAT 57.423 29.630 0.00 0.00 0.00 2.57
2862 4911 9.577110 AAAGCATGTGTAATAGTGAAATGAATG 57.423 29.630 0.00 0.00 0.00 2.67
2863 4912 7.709947 AGCATGTGTAATAGTGAAATGAATGG 58.290 34.615 0.00 0.00 0.00 3.16
2864 4913 7.340232 AGCATGTGTAATAGTGAAATGAATGGT 59.660 33.333 0.00 0.00 0.00 3.55
2865 4914 7.433131 GCATGTGTAATAGTGAAATGAATGGTG 59.567 37.037 0.00 0.00 0.00 4.17
2866 4915 6.851609 TGTGTAATAGTGAAATGAATGGTGC 58.148 36.000 0.00 0.00 0.00 5.01
2867 4916 6.432472 TGTGTAATAGTGAAATGAATGGTGCA 59.568 34.615 0.00 0.00 0.00 4.57
2913 4962 9.309516 CACTGTTTAGAAACTCAGTACAAACTA 57.690 33.333 6.69 0.00 38.79 2.24
2914 4963 9.310716 ACTGTTTAGAAACTCAGTACAAACTAC 57.689 33.333 6.69 0.00 39.01 2.73
2915 4964 9.530633 CTGTTTAGAAACTCAGTACAAACTACT 57.469 33.333 6.69 0.00 39.59 2.57
2916 4965 9.525409 TGTTTAGAAACTCAGTACAAACTACTC 57.475 33.333 6.69 0.00 39.59 2.59
2917 4966 8.976471 GTTTAGAAACTCAGTACAAACTACTCC 58.024 37.037 0.00 0.00 36.03 3.85
2918 4967 6.099159 AGAAACTCAGTACAAACTACTCCC 57.901 41.667 0.00 0.00 33.48 4.30
2919 4968 5.839606 AGAAACTCAGTACAAACTACTCCCT 59.160 40.000 0.00 0.00 33.48 4.20
2920 4969 5.725325 AACTCAGTACAAACTACTCCCTC 57.275 43.478 0.00 0.00 33.48 4.30
2921 4970 4.087907 ACTCAGTACAAACTACTCCCTCC 58.912 47.826 0.00 0.00 33.48 4.30
2922 4971 3.087031 TCAGTACAAACTACTCCCTCCG 58.913 50.000 0.00 0.00 33.48 4.63
2923 4972 2.824341 CAGTACAAACTACTCCCTCCGT 59.176 50.000 0.00 0.00 33.48 4.69
2924 4973 3.087781 AGTACAAACTACTCCCTCCGTC 58.912 50.000 0.00 0.00 32.84 4.79
2925 4974 2.005370 ACAAACTACTCCCTCCGTCA 57.995 50.000 0.00 0.00 0.00 4.35
2926 4975 2.322658 ACAAACTACTCCCTCCGTCAA 58.677 47.619 0.00 0.00 0.00 3.18
2927 4976 2.299297 ACAAACTACTCCCTCCGTCAAG 59.701 50.000 0.00 0.00 0.00 3.02
2928 4977 2.561419 CAAACTACTCCCTCCGTCAAGA 59.439 50.000 0.00 0.00 0.00 3.02
2929 4978 2.599408 ACTACTCCCTCCGTCAAGAA 57.401 50.000 0.00 0.00 0.00 2.52
2930 4979 2.885616 ACTACTCCCTCCGTCAAGAAA 58.114 47.619 0.00 0.00 0.00 2.52
2931 4980 3.442076 ACTACTCCCTCCGTCAAGAAAT 58.558 45.455 0.00 0.00 0.00 2.17
2932 4981 4.607239 ACTACTCCCTCCGTCAAGAAATA 58.393 43.478 0.00 0.00 0.00 1.40
2933 4982 5.209659 ACTACTCCCTCCGTCAAGAAATAT 58.790 41.667 0.00 0.00 0.00 1.28
2934 4983 6.371278 ACTACTCCCTCCGTCAAGAAATATA 58.629 40.000 0.00 0.00 0.00 0.86
2935 4984 6.837568 ACTACTCCCTCCGTCAAGAAATATAA 59.162 38.462 0.00 0.00 0.00 0.98
2936 4985 6.163135 ACTCCCTCCGTCAAGAAATATAAG 57.837 41.667 0.00 0.00 0.00 1.73
2937 4986 5.897824 ACTCCCTCCGTCAAGAAATATAAGA 59.102 40.000 0.00 0.00 0.00 2.10
2941 4990 5.258456 TCCGTCAAGAAATATAAGAGCGT 57.742 39.130 0.00 0.00 0.00 5.07
2943 4992 6.103997 TCCGTCAAGAAATATAAGAGCGTTT 58.896 36.000 0.00 0.00 0.00 3.60
2944 4993 7.259882 TCCGTCAAGAAATATAAGAGCGTTTA 58.740 34.615 0.00 0.00 0.00 2.01
2946 4995 7.434307 CCGTCAAGAAATATAAGAGCGTTTAGA 59.566 37.037 0.00 0.00 0.00 2.10
2947 4996 8.969267 CGTCAAGAAATATAAGAGCGTTTAGAT 58.031 33.333 0.00 0.00 0.00 1.98
2959 5008 7.393841 AGAGCGTTTAGATCACTACTTTAGT 57.606 36.000 0.00 0.00 37.82 2.24
2993 5042 8.614469 ATGCTCTTATATTTCTTTACAGAGGC 57.386 34.615 0.00 0.00 0.00 4.70
3007 5056 7.926555 TCTTTACAGAGGCAGTACTAAATATGC 59.073 37.037 0.00 0.00 37.95 3.14
3036 5085 4.102649 GCATTTCCGGCACAATAAGTTAC 58.897 43.478 0.00 0.00 0.00 2.50
3037 5086 4.668289 CATTTCCGGCACAATAAGTTACC 58.332 43.478 0.00 0.00 0.00 2.85
3038 5087 3.420300 TTCCGGCACAATAAGTTACCA 57.580 42.857 0.00 0.00 0.00 3.25
3099 5148 3.341469 ATGGAGAGGCCGGGGGTTA 62.341 63.158 2.18 0.00 40.66 2.85
3190 5322 3.678072 TGTGCGCAATAGAAACTAGTGAC 59.322 43.478 14.00 0.00 0.00 3.67
3388 5520 3.954904 TGCTAGGAGAAGGTCATACTCAC 59.045 47.826 0.00 0.00 33.00 3.51
3391 5523 3.100671 AGGAGAAGGTCATACTCACACC 58.899 50.000 0.00 0.00 33.00 4.16
3423 5555 0.790814 GCTGTCGGAACACTGTAAGC 59.209 55.000 0.00 0.00 37.60 3.09
3426 5558 1.012486 GTCGGAACACTGTAAGCCCG 61.012 60.000 0.00 0.00 37.60 6.13
3431 5569 3.243636 CGGAACACTGTAAGCCCGTATAT 60.244 47.826 0.00 0.00 37.60 0.86
3439 5577 6.365247 CACTGTAAGCCCGTATATATTCACAC 59.635 42.308 0.00 0.00 37.60 3.82
3446 5584 4.862574 CCCGTATATATTCACACATCCACG 59.137 45.833 0.00 0.00 0.00 4.94
3588 5726 2.347731 GGTGTCTTGGTCCTCGAAATC 58.652 52.381 0.00 0.00 0.00 2.17
3687 5826 4.418013 TCATTTTTGGTGCATCTGTACG 57.582 40.909 0.00 0.00 0.00 3.67
3797 6028 2.159366 CGGTATCGCAGATGATAGACCC 60.159 54.545 1.97 0.00 45.12 4.46
3807 6038 1.040646 TGATAGACCCATCGCTGGAC 58.959 55.000 6.92 0.58 46.37 4.02
3840 6071 2.771089 AGCCAGGCATTACGATGTATG 58.229 47.619 15.80 0.00 35.63 2.39
4078 6312 4.085009 GCCGTATCCTAGGTAGGTAATGT 58.915 47.826 9.08 0.00 44.02 2.71
4184 6418 3.244078 CCCTTTTGTTTAGGGTTGCTTCC 60.244 47.826 0.00 0.00 46.16 3.46
4192 6426 5.193679 GTTTAGGGTTGCTTCCATGTCTAT 58.806 41.667 0.00 0.00 0.00 1.98
4215 6449 4.086706 GGTCCAGTTACCCCATTATCTG 57.913 50.000 0.00 0.00 33.02 2.90
4291 6527 7.191918 AGTAAAATCCCCTGGATCATTTTCTT 58.808 34.615 11.23 2.90 42.27 2.52
4293 6529 5.945144 AATCCCCTGGATCATTTTCTTTG 57.055 39.130 0.00 0.00 42.27 2.77
4307 6543 0.958091 TCTTTGTCCGCCATTTGGTG 59.042 50.000 3.08 3.08 45.02 4.17
4308 6544 0.673437 CTTTGTCCGCCATTTGGTGT 59.327 50.000 9.19 0.00 43.97 4.16
4312 6548 1.338674 TGTCCGCCATTTGGTGTAGAG 60.339 52.381 9.19 0.00 43.97 2.43
4326 6562 9.632638 ATTTGGTGTAGAGATAGTGCAAATATT 57.367 29.630 0.00 0.00 0.00 1.28
4328 6564 9.542462 TTGGTGTAGAGATAGTGCAAATATTAC 57.458 33.333 0.00 0.00 0.00 1.89
4329 6565 8.924303 TGGTGTAGAGATAGTGCAAATATTACT 58.076 33.333 0.00 0.00 0.00 2.24
4330 6566 9.765795 GGTGTAGAGATAGTGCAAATATTACTT 57.234 33.333 0.00 0.00 0.00 2.24
4364 6610 7.828508 AAGAGGCATCAAAATATAGCATCAA 57.171 32.000 0.00 0.00 38.35 2.57
4365 6611 7.828508 AGAGGCATCAAAATATAGCATCAAA 57.171 32.000 0.00 0.00 38.35 2.69
4368 6614 7.431249 AGGCATCAAAATATAGCATCAAACAG 58.569 34.615 0.00 0.00 0.00 3.16
4421 6667 6.256539 CCACTACATAGTTAAGATGCACACAG 59.743 42.308 0.00 0.00 33.46 3.66
4435 6681 0.601046 ACACAGCGACACACCATCAG 60.601 55.000 0.00 0.00 0.00 2.90
4441 6687 0.173481 CGACACACCATCAGTCCGAT 59.827 55.000 0.00 0.00 33.27 4.18
4456 6702 9.104965 CATCAGTCCGATAGTAAAATAAAACCA 57.895 33.333 0.00 0.00 31.20 3.67
4490 6736 6.712998 TGCAACAGTAAAGCCATAAAAGACTA 59.287 34.615 0.00 0.00 0.00 2.59
4494 6740 8.685838 ACAGTAAAGCCATAAAAGACTAACAA 57.314 30.769 0.00 0.00 0.00 2.83
4510 6756 9.632638 AAGACTAACAATATGTCTATGCCAAAT 57.367 29.630 0.00 0.00 39.78 2.32
4515 6761 7.764141 ACAATATGTCTATGCCAAATATGCA 57.236 32.000 0.00 0.00 43.97 3.96
4516 6762 7.823665 ACAATATGTCTATGCCAAATATGCAG 58.176 34.615 0.00 0.00 42.92 4.41
4521 6767 5.221986 TGTCTATGCCAAATATGCAGGAGAT 60.222 40.000 0.00 0.00 42.92 2.75
4525 6771 2.295349 GCCAAATATGCAGGAGATGGTG 59.705 50.000 9.27 0.00 0.00 4.17
4530 6776 1.976132 ATGCAGGAGATGGTGGACCG 61.976 60.000 0.00 0.00 39.43 4.79
4532 6778 1.690219 GCAGGAGATGGTGGACCGAT 61.690 60.000 0.00 0.00 39.43 4.18
4576 6822 3.378911 AATGGGTAAAAACTTGCGTGG 57.621 42.857 0.00 0.00 0.00 4.94
4604 6850 1.669760 CCAACCGCATACACACCGT 60.670 57.895 0.00 0.00 0.00 4.83
4609 6855 2.441378 CGCATACACACCGTCGTGG 61.441 63.158 6.43 0.00 44.86 4.94
4613 6859 2.545113 GCATACACACCGTCGTGGATAT 60.545 50.000 6.43 0.00 44.86 1.63
4614 6860 3.305964 CATACACACCGTCGTGGATATC 58.694 50.000 6.43 0.00 44.86 1.63
4620 6866 1.501337 CCGTCGTGGATATCGGTCGA 61.501 60.000 10.05 10.05 42.00 4.20
4625 6871 3.928992 GTCGTGGATATCGGTCGATACTA 59.071 47.826 14.22 5.44 39.56 1.82
4627 6873 3.241900 CGTGGATATCGGTCGATACTACG 60.242 52.174 22.18 22.18 39.56 3.51
4635 6881 2.600792 CGGTCGATACTACGTAAGGTGC 60.601 54.545 0.00 0.00 46.39 5.01
4640 6886 4.034858 TCGATACTACGTAAGGTGCAGAAG 59.965 45.833 0.00 0.00 46.39 2.85
4641 6887 4.034858 CGATACTACGTAAGGTGCAGAAGA 59.965 45.833 0.00 0.00 46.39 2.87
4642 6888 3.851976 ACTACGTAAGGTGCAGAAGAG 57.148 47.619 0.00 0.00 46.39 2.85
4643 6889 2.492484 ACTACGTAAGGTGCAGAAGAGG 59.508 50.000 0.00 0.00 46.39 3.69
4644 6890 1.629043 ACGTAAGGTGCAGAAGAGGA 58.371 50.000 0.00 0.00 46.39 3.71
4645 6891 1.546476 ACGTAAGGTGCAGAAGAGGAG 59.454 52.381 0.00 0.00 46.39 3.69
4646 6892 1.737363 CGTAAGGTGCAGAAGAGGAGC 60.737 57.143 0.00 0.00 0.00 4.70
4647 6893 1.552792 GTAAGGTGCAGAAGAGGAGCT 59.447 52.381 0.00 0.00 39.43 4.09
4648 6894 1.063183 AAGGTGCAGAAGAGGAGCTT 58.937 50.000 0.00 0.00 41.78 3.74
4649 6895 1.944177 AGGTGCAGAAGAGGAGCTTA 58.056 50.000 0.00 0.00 36.83 3.09
4650 6896 1.552792 AGGTGCAGAAGAGGAGCTTAC 59.447 52.381 0.00 0.00 36.83 2.34
4651 6897 1.634702 GTGCAGAAGAGGAGCTTACG 58.365 55.000 0.00 0.00 36.83 3.18
4652 6898 0.532573 TGCAGAAGAGGAGCTTACGG 59.467 55.000 0.00 0.00 36.83 4.02
4653 6899 0.533032 GCAGAAGAGGAGCTTACGGT 59.467 55.000 0.00 0.00 36.83 4.83
4654 6900 1.066787 GCAGAAGAGGAGCTTACGGTT 60.067 52.381 0.00 0.00 36.83 4.44
4655 6901 2.611518 CAGAAGAGGAGCTTACGGTTG 58.388 52.381 0.00 0.00 36.83 3.77
4656 6902 1.550976 AGAAGAGGAGCTTACGGTTGG 59.449 52.381 0.00 0.00 36.83 3.77
4657 6903 0.613777 AAGAGGAGCTTACGGTTGGG 59.386 55.000 0.00 0.00 34.31 4.12
4658 6904 0.544595 AGAGGAGCTTACGGTTGGGT 60.545 55.000 0.00 0.00 0.00 4.51
4659 6905 0.108281 GAGGAGCTTACGGTTGGGTC 60.108 60.000 0.00 0.00 0.00 4.46
4660 6906 0.544595 AGGAGCTTACGGTTGGGTCT 60.545 55.000 0.00 0.00 0.00 3.85
4661 6907 0.323957 GGAGCTTACGGTTGGGTCTT 59.676 55.000 0.00 0.00 0.00 3.01
4662 6908 1.439679 GAGCTTACGGTTGGGTCTTG 58.560 55.000 0.00 0.00 0.00 3.02
4663 6909 0.036306 AGCTTACGGTTGGGTCTTGG 59.964 55.000 0.00 0.00 0.00 3.61
4664 6910 1.583495 GCTTACGGTTGGGTCTTGGC 61.583 60.000 0.00 0.00 0.00 4.52
4665 6911 0.958876 CTTACGGTTGGGTCTTGGCC 60.959 60.000 0.00 0.00 0.00 5.36
4666 6912 1.706995 TTACGGTTGGGTCTTGGCCA 61.707 55.000 0.00 0.00 0.00 5.36
4667 6913 1.493854 TACGGTTGGGTCTTGGCCAT 61.494 55.000 6.09 0.00 0.00 4.40
4668 6914 2.046285 CGGTTGGGTCTTGGCCATC 61.046 63.158 6.09 0.00 0.00 3.51
4669 6915 1.076549 GGTTGGGTCTTGGCCATCA 59.923 57.895 6.09 0.00 0.00 3.07
4670 6916 1.250840 GGTTGGGTCTTGGCCATCAC 61.251 60.000 6.09 6.09 0.00 3.06
4671 6917 0.539438 GTTGGGTCTTGGCCATCACA 60.539 55.000 6.09 4.94 0.00 3.58
4672 6918 0.409092 TTGGGTCTTGGCCATCACAT 59.591 50.000 6.09 0.00 0.00 3.21
4673 6919 0.409092 TGGGTCTTGGCCATCACATT 59.591 50.000 6.09 0.00 0.00 2.71
4674 6920 0.819582 GGGTCTTGGCCATCACATTG 59.180 55.000 6.09 0.00 0.00 2.82
4675 6921 1.549203 GGTCTTGGCCATCACATTGT 58.451 50.000 6.09 0.00 0.00 2.71
4676 6922 1.203052 GGTCTTGGCCATCACATTGTG 59.797 52.381 6.09 10.64 34.45 3.33
4677 6923 2.161855 GTCTTGGCCATCACATTGTGA 58.838 47.619 21.05 21.05 46.90 3.58
4691 6937 7.901283 TCACATTGTGATCCCATTATCAAAT 57.099 32.000 15.41 0.00 37.67 2.32
4692 6938 7.718525 TCACATTGTGATCCCATTATCAAATG 58.281 34.615 15.41 13.79 37.67 2.32
4693 6939 6.926826 CACATTGTGATCCCATTATCAAATGG 59.073 38.462 11.45 9.70 46.91 3.16
4694 6940 8.427216 CACATTGTGATCCCATTATCAAATGGC 61.427 40.741 11.45 0.24 46.50 4.40
4705 6951 6.802608 CATTATCAAATGGCAACTCATGTCT 58.197 36.000 0.00 0.00 39.10 3.41
4706 6952 7.933396 CATTATCAAATGGCAACTCATGTCTA 58.067 34.615 0.00 0.00 39.10 2.59
4707 6953 8.573885 CATTATCAAATGGCAACTCATGTCTAT 58.426 33.333 0.00 0.00 39.10 1.98
4708 6954 5.823209 TCAAATGGCAACTCATGTCTATG 57.177 39.130 0.00 0.00 33.68 2.23
4709 6955 4.096833 TCAAATGGCAACTCATGTCTATGC 59.903 41.667 0.00 0.00 33.68 3.14
4710 6956 3.572632 ATGGCAACTCATGTCTATGCT 57.427 42.857 12.61 0.00 37.20 3.79
4711 6957 3.354948 TGGCAACTCATGTCTATGCTT 57.645 42.857 12.61 0.00 37.20 3.91
4712 6958 4.486125 TGGCAACTCATGTCTATGCTTA 57.514 40.909 12.61 0.00 37.20 3.09
4713 6959 4.842574 TGGCAACTCATGTCTATGCTTAA 58.157 39.130 12.61 0.00 37.20 1.85
4714 6960 4.877823 TGGCAACTCATGTCTATGCTTAAG 59.122 41.667 0.00 0.00 37.20 1.85
4715 6961 5.118990 GGCAACTCATGTCTATGCTTAAGA 58.881 41.667 6.67 0.00 37.20 2.10
4716 6962 5.586243 GGCAACTCATGTCTATGCTTAAGAA 59.414 40.000 6.67 0.00 37.20 2.52
4717 6963 6.094048 GGCAACTCATGTCTATGCTTAAGAAA 59.906 38.462 6.67 0.00 37.20 2.52
4718 6964 6.963805 GCAACTCATGTCTATGCTTAAGAAAC 59.036 38.462 6.67 0.00 34.21 2.78
4719 6965 7.467623 CAACTCATGTCTATGCTTAAGAAACC 58.532 38.462 6.67 0.00 34.21 3.27
4720 6966 6.116126 ACTCATGTCTATGCTTAAGAAACCC 58.884 40.000 6.67 0.00 34.21 4.11
4721 6967 5.437060 TCATGTCTATGCTTAAGAAACCCC 58.563 41.667 6.67 0.00 34.21 4.95
4722 6968 4.919774 TGTCTATGCTTAAGAAACCCCA 57.080 40.909 6.67 0.00 0.00 4.96
4723 6969 5.249780 TGTCTATGCTTAAGAAACCCCAA 57.750 39.130 6.67 0.00 0.00 4.12
4724 6970 5.007682 TGTCTATGCTTAAGAAACCCCAAC 58.992 41.667 6.67 0.00 0.00 3.77
4725 6971 4.398358 GTCTATGCTTAAGAAACCCCAACC 59.602 45.833 6.67 0.00 0.00 3.77
4726 6972 2.757894 TGCTTAAGAAACCCCAACCA 57.242 45.000 6.67 0.00 0.00 3.67
4727 6973 3.252554 TGCTTAAGAAACCCCAACCAT 57.747 42.857 6.67 0.00 0.00 3.55
4728 6974 3.161866 TGCTTAAGAAACCCCAACCATC 58.838 45.455 6.67 0.00 0.00 3.51
4729 6975 3.181423 TGCTTAAGAAACCCCAACCATCT 60.181 43.478 6.67 0.00 0.00 2.90
4730 6976 3.832490 GCTTAAGAAACCCCAACCATCTT 59.168 43.478 6.67 0.00 34.85 2.40
4731 6977 4.283467 GCTTAAGAAACCCCAACCATCTTT 59.717 41.667 6.67 0.00 32.87 2.52
4732 6978 5.783111 CTTAAGAAACCCCAACCATCTTTG 58.217 41.667 0.00 0.00 32.87 2.77
4733 6979 3.611025 AGAAACCCCAACCATCTTTGA 57.389 42.857 0.00 0.00 0.00 2.69
4734 6980 4.132122 AGAAACCCCAACCATCTTTGAT 57.868 40.909 0.00 0.00 0.00 2.57
4735 6981 4.089361 AGAAACCCCAACCATCTTTGATC 58.911 43.478 0.00 0.00 0.00 2.92
4736 6982 3.541242 AACCCCAACCATCTTTGATCA 57.459 42.857 0.00 0.00 0.00 2.92
4737 6983 3.541242 ACCCCAACCATCTTTGATCAA 57.459 42.857 3.38 3.38 0.00 2.57
4738 6984 3.165071 ACCCCAACCATCTTTGATCAAC 58.835 45.455 7.89 0.00 0.00 3.18
4739 6985 2.164219 CCCCAACCATCTTTGATCAACG 59.836 50.000 7.89 6.62 0.00 4.10
4740 6986 3.081061 CCCAACCATCTTTGATCAACGA 58.919 45.455 16.08 16.08 0.00 3.85
4741 6987 3.127548 CCCAACCATCTTTGATCAACGAG 59.872 47.826 18.24 10.23 0.00 4.18
4747 6993 4.505922 CCATCTTTGATCAACGAGCTAGTC 59.494 45.833 18.24 0.00 0.00 2.59
4762 7008 2.930682 GCTAGTCTACCGAAAAAGGCTG 59.069 50.000 0.00 0.00 33.69 4.85
4799 7047 0.665835 TAAAGCAACCACCAAGCACG 59.334 50.000 0.00 0.00 0.00 5.34
4889 7157 2.483877 CACACACAAACACACACAGACT 59.516 45.455 0.00 0.00 0.00 3.24
4938 7207 1.219124 CCCAGCACAGACGCACTAT 59.781 57.895 0.00 0.00 0.00 2.12
5076 7362 0.904865 TGGAGGTGATGGCGTCTCTT 60.905 55.000 8.40 0.18 0.00 2.85
5165 7460 5.499334 CGAAGAGAAATACGCTGAATCACAC 60.499 44.000 0.00 0.00 0.00 3.82
5194 7489 0.753867 TAACAGTCCACAGCGTCCAA 59.246 50.000 0.00 0.00 0.00 3.53
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
7 8 9.775854 CATCAGTCACATTTCCTAATATCTCTT 57.224 33.333 0.00 0.00 0.00 2.85
8 9 7.877097 GCATCAGTCACATTTCCTAATATCTCT 59.123 37.037 0.00 0.00 0.00 3.10
9 10 7.877097 AGCATCAGTCACATTTCCTAATATCTC 59.123 37.037 0.00 0.00 0.00 2.75
10 11 7.743749 AGCATCAGTCACATTTCCTAATATCT 58.256 34.615 0.00 0.00 0.00 1.98
11 12 7.118971 GGAGCATCAGTCACATTTCCTAATATC 59.881 40.741 0.00 0.00 36.25 1.63
12 13 6.939163 GGAGCATCAGTCACATTTCCTAATAT 59.061 38.462 0.00 0.00 36.25 1.28
17 18 2.575279 AGGAGCATCAGTCACATTTCCT 59.425 45.455 0.00 0.00 36.25 3.36
18 19 2.941720 GAGGAGCATCAGTCACATTTCC 59.058 50.000 0.00 0.00 36.25 3.13
19 20 2.606725 CGAGGAGCATCAGTCACATTTC 59.393 50.000 0.00 0.00 36.25 2.17
20 21 2.027745 ACGAGGAGCATCAGTCACATTT 60.028 45.455 0.00 0.00 36.25 2.32
21 22 1.552337 ACGAGGAGCATCAGTCACATT 59.448 47.619 0.00 0.00 36.25 2.71
23 24 0.244721 CACGAGGAGCATCAGTCACA 59.755 55.000 0.00 0.00 36.25 3.58
24 25 0.528017 TCACGAGGAGCATCAGTCAC 59.472 55.000 0.00 0.00 36.25 3.67
25 26 1.406898 GATCACGAGGAGCATCAGTCA 59.593 52.381 0.00 0.00 36.25 3.41
26 27 1.599171 CGATCACGAGGAGCATCAGTC 60.599 57.143 0.00 0.00 42.66 3.51
27 28 0.383590 CGATCACGAGGAGCATCAGT 59.616 55.000 0.00 0.00 42.66 3.41
28 29 0.383590 ACGATCACGAGGAGCATCAG 59.616 55.000 0.00 0.00 42.66 2.90
29 30 1.675552 TACGATCACGAGGAGCATCA 58.324 50.000 0.00 0.00 42.66 3.07
30 31 2.776312 TTACGATCACGAGGAGCATC 57.224 50.000 0.00 0.00 42.66 3.91
31 32 2.623416 TGATTACGATCACGAGGAGCAT 59.377 45.455 0.00 0.00 42.66 3.79
32 33 2.021457 TGATTACGATCACGAGGAGCA 58.979 47.619 0.00 0.00 42.66 4.26
33 34 2.776312 TGATTACGATCACGAGGAGC 57.224 50.000 0.00 0.00 42.66 4.70
34 35 6.439599 ACTAATTGATTACGATCACGAGGAG 58.560 40.000 0.00 0.00 41.84 3.69
35 36 6.387041 ACTAATTGATTACGATCACGAGGA 57.613 37.500 0.00 0.00 41.84 3.71
36 37 7.464830 AAACTAATTGATTACGATCACGAGG 57.535 36.000 0.00 0.00 41.84 4.63
60 61 9.343539 CCCCCTTTTTAAAAATGTGTTGAAATA 57.656 29.630 13.55 0.00 0.00 1.40
61 62 7.201866 GCCCCCTTTTTAAAAATGTGTTGAAAT 60.202 33.333 13.55 0.00 0.00 2.17
62 63 6.095580 GCCCCCTTTTTAAAAATGTGTTGAAA 59.904 34.615 13.55 0.00 0.00 2.69
63 64 5.590663 GCCCCCTTTTTAAAAATGTGTTGAA 59.409 36.000 13.55 0.00 0.00 2.69
64 65 5.126779 GCCCCCTTTTTAAAAATGTGTTGA 58.873 37.500 13.55 0.00 0.00 3.18
65 66 4.024472 CGCCCCCTTTTTAAAAATGTGTTG 60.024 41.667 13.55 1.68 0.00 3.33
66 67 4.130857 CGCCCCCTTTTTAAAAATGTGTT 58.869 39.130 13.55 0.00 0.00 3.32
67 68 3.734463 CGCCCCCTTTTTAAAAATGTGT 58.266 40.909 13.55 0.00 0.00 3.72
68 69 2.482336 GCGCCCCCTTTTTAAAAATGTG 59.518 45.455 13.55 10.14 0.00 3.21
69 70 2.370519 AGCGCCCCCTTTTTAAAAATGT 59.629 40.909 13.55 0.00 0.00 2.71
70 71 3.052455 AGCGCCCCCTTTTTAAAAATG 57.948 42.857 13.55 10.80 0.00 2.32
71 72 3.780804 AAGCGCCCCCTTTTTAAAAAT 57.219 38.095 13.55 0.00 0.00 1.82
72 73 3.562343 AAAGCGCCCCCTTTTTAAAAA 57.438 38.095 12.62 12.62 31.25 1.94
73 74 4.893829 ATAAAGCGCCCCCTTTTTAAAA 57.106 36.364 2.29 0.00 36.50 1.52
74 75 4.893829 AATAAAGCGCCCCCTTTTTAAA 57.106 36.364 2.29 0.00 36.50 1.52
75 76 5.018149 AGTAATAAAGCGCCCCCTTTTTAA 58.982 37.500 2.29 0.00 36.50 1.52
76 77 4.602107 AGTAATAAAGCGCCCCCTTTTTA 58.398 39.130 2.29 1.17 36.50 1.52
77 78 3.437213 AGTAATAAAGCGCCCCCTTTTT 58.563 40.909 2.29 0.00 36.50 1.94
78 79 3.095912 AGTAATAAAGCGCCCCCTTTT 57.904 42.857 2.29 0.00 36.50 2.27
79 80 2.820728 AGTAATAAAGCGCCCCCTTT 57.179 45.000 2.29 0.00 38.50 3.11
80 81 2.820728 AAGTAATAAAGCGCCCCCTT 57.179 45.000 2.29 0.00 0.00 3.95
81 82 3.937778 TTAAGTAATAAAGCGCCCCCT 57.062 42.857 2.29 0.00 0.00 4.79
82 83 4.202080 CCTTTTAAGTAATAAAGCGCCCCC 60.202 45.833 2.29 0.00 35.03 5.40
83 84 4.400251 ACCTTTTAAGTAATAAAGCGCCCC 59.600 41.667 2.29 0.00 35.03 5.80
84 85 5.571784 ACCTTTTAAGTAATAAAGCGCCC 57.428 39.130 2.29 0.00 35.03 6.13
85 86 8.969121 TTAAACCTTTTAAGTAATAAAGCGCC 57.031 30.769 2.29 0.00 35.03 6.53
86 87 8.581263 GCTTAAACCTTTTAAGTAATAAAGCGC 58.419 33.333 16.14 0.00 35.03 5.92
87 88 9.615295 TGCTTAAACCTTTTAAGTAATAAAGCG 57.385 29.630 16.14 0.00 35.03 4.68
95 96 8.795513 GGGTGTAATGCTTAAACCTTTTAAGTA 58.204 33.333 16.14 13.37 42.23 2.24
96 97 7.288158 TGGGTGTAATGCTTAAACCTTTTAAGT 59.712 33.333 16.14 3.85 42.23 2.24
97 98 7.662897 TGGGTGTAATGCTTAAACCTTTTAAG 58.337 34.615 12.23 12.23 42.23 1.85
98 99 7.598759 TGGGTGTAATGCTTAAACCTTTTAA 57.401 32.000 12.33 0.00 42.23 1.52
99 100 6.294843 GCTGGGTGTAATGCTTAAACCTTTTA 60.295 38.462 12.33 0.00 42.23 1.52
100 101 5.510690 GCTGGGTGTAATGCTTAAACCTTTT 60.511 40.000 12.33 0.00 42.23 2.27
101 102 4.021456 GCTGGGTGTAATGCTTAAACCTTT 60.021 41.667 12.33 0.00 42.23 3.11
102 103 3.509967 GCTGGGTGTAATGCTTAAACCTT 59.490 43.478 12.33 0.00 42.23 3.50
103 104 3.089284 GCTGGGTGTAATGCTTAAACCT 58.911 45.455 12.33 0.00 42.23 3.50
104 105 2.165641 GGCTGGGTGTAATGCTTAAACC 59.834 50.000 6.69 6.69 41.91 3.27
105 106 3.089284 AGGCTGGGTGTAATGCTTAAAC 58.911 45.455 0.00 0.00 0.00 2.01
106 107 3.010138 AGAGGCTGGGTGTAATGCTTAAA 59.990 43.478 0.00 0.00 0.00 1.52
107 108 2.576191 AGAGGCTGGGTGTAATGCTTAA 59.424 45.455 0.00 0.00 0.00 1.85
108 109 2.092968 CAGAGGCTGGGTGTAATGCTTA 60.093 50.000 0.00 0.00 0.00 3.09
109 110 0.995024 AGAGGCTGGGTGTAATGCTT 59.005 50.000 0.00 0.00 0.00 3.91
110 111 0.254178 CAGAGGCTGGGTGTAATGCT 59.746 55.000 0.00 0.00 0.00 3.79
111 112 1.379642 GCAGAGGCTGGGTGTAATGC 61.380 60.000 0.00 0.00 36.96 3.56
112 113 0.035152 TGCAGAGGCTGGGTGTAATG 60.035 55.000 0.00 0.00 41.91 1.90
113 114 0.921896 ATGCAGAGGCTGGGTGTAAT 59.078 50.000 0.00 0.00 41.91 1.89
114 115 1.578897 TATGCAGAGGCTGGGTGTAA 58.421 50.000 0.00 0.00 41.91 2.41
115 116 1.486310 CTTATGCAGAGGCTGGGTGTA 59.514 52.381 0.00 0.00 41.91 2.90
116 117 0.254178 CTTATGCAGAGGCTGGGTGT 59.746 55.000 0.00 0.00 41.91 4.16
117 118 0.254178 ACTTATGCAGAGGCTGGGTG 59.746 55.000 0.00 0.00 41.91 4.61
118 119 1.879575 TACTTATGCAGAGGCTGGGT 58.120 50.000 0.00 0.00 41.91 4.51
119 120 2.435805 TCTTACTTATGCAGAGGCTGGG 59.564 50.000 0.00 0.00 41.91 4.45
120 121 3.827008 TCTTACTTATGCAGAGGCTGG 57.173 47.619 0.00 0.00 41.91 4.85
130 131 3.940852 TGGCTGTGTGCATCTTACTTATG 59.059 43.478 0.00 0.00 45.15 1.90
131 132 4.220693 TGGCTGTGTGCATCTTACTTAT 57.779 40.909 0.00 0.00 45.15 1.73
132 133 3.694043 TGGCTGTGTGCATCTTACTTA 57.306 42.857 0.00 0.00 45.15 2.24
133 134 2.566833 TGGCTGTGTGCATCTTACTT 57.433 45.000 0.00 0.00 45.15 2.24
134 135 2.554032 GTTTGGCTGTGTGCATCTTACT 59.446 45.455 0.00 0.00 45.15 2.24
135 136 2.293122 TGTTTGGCTGTGTGCATCTTAC 59.707 45.455 0.00 0.00 45.15 2.34
136 137 2.580962 TGTTTGGCTGTGTGCATCTTA 58.419 42.857 0.00 0.00 45.15 2.10
137 138 1.401761 TGTTTGGCTGTGTGCATCTT 58.598 45.000 0.00 0.00 45.15 2.40
138 139 1.401761 TTGTTTGGCTGTGTGCATCT 58.598 45.000 0.00 0.00 45.15 2.90
139 140 2.129607 CTTTGTTTGGCTGTGTGCATC 58.870 47.619 0.00 0.00 45.15 3.91
140 141 1.481772 ACTTTGTTTGGCTGTGTGCAT 59.518 42.857 0.00 0.00 45.15 3.96
141 142 0.894141 ACTTTGTTTGGCTGTGTGCA 59.106 45.000 0.00 0.00 45.15 4.57
142 143 1.926510 GAACTTTGTTTGGCTGTGTGC 59.073 47.619 0.00 0.00 41.94 4.57
143 144 3.229276 TGAACTTTGTTTGGCTGTGTG 57.771 42.857 0.00 0.00 0.00 3.82
144 145 4.470334 AATGAACTTTGTTTGGCTGTGT 57.530 36.364 0.00 0.00 0.00 3.72
145 146 5.234116 GGTAAATGAACTTTGTTTGGCTGTG 59.766 40.000 0.00 0.00 0.00 3.66
146 147 5.356426 GGTAAATGAACTTTGTTTGGCTGT 58.644 37.500 0.00 0.00 0.00 4.40
147 148 4.749598 GGGTAAATGAACTTTGTTTGGCTG 59.250 41.667 0.00 0.00 0.00 4.85
148 149 4.407296 TGGGTAAATGAACTTTGTTTGGCT 59.593 37.500 0.00 0.00 0.00 4.75
149 150 4.509970 GTGGGTAAATGAACTTTGTTTGGC 59.490 41.667 0.00 0.00 0.00 4.52
150 151 5.665459 TGTGGGTAAATGAACTTTGTTTGG 58.335 37.500 0.00 0.00 0.00 3.28
151 152 7.923344 TGTATGTGGGTAAATGAACTTTGTTTG 59.077 33.333 0.00 0.00 0.00 2.93
152 153 8.012957 TGTATGTGGGTAAATGAACTTTGTTT 57.987 30.769 0.00 0.00 0.00 2.83
153 154 7.589958 TGTATGTGGGTAAATGAACTTTGTT 57.410 32.000 0.00 0.00 0.00 2.83
154 155 7.589958 TTGTATGTGGGTAAATGAACTTTGT 57.410 32.000 0.00 0.00 0.00 2.83
155 156 6.586082 GCTTGTATGTGGGTAAATGAACTTTG 59.414 38.462 0.00 0.00 0.00 2.77
156 157 6.569610 CGCTTGTATGTGGGTAAATGAACTTT 60.570 38.462 0.00 0.00 0.00 2.66
157 158 5.106317 CGCTTGTATGTGGGTAAATGAACTT 60.106 40.000 0.00 0.00 0.00 2.66
158 159 4.394920 CGCTTGTATGTGGGTAAATGAACT 59.605 41.667 0.00 0.00 0.00 3.01
159 160 4.155280 ACGCTTGTATGTGGGTAAATGAAC 59.845 41.667 0.00 0.00 0.00 3.18
160 161 4.155099 CACGCTTGTATGTGGGTAAATGAA 59.845 41.667 0.00 0.00 32.47 2.57
161 162 3.687212 CACGCTTGTATGTGGGTAAATGA 59.313 43.478 0.00 0.00 32.47 2.57
162 163 3.438781 ACACGCTTGTATGTGGGTAAATG 59.561 43.478 0.00 0.00 40.39 2.32
163 164 3.438781 CACACGCTTGTATGTGGGTAAAT 59.561 43.478 0.00 0.00 42.08 1.40
164 165 2.809119 CACACGCTTGTATGTGGGTAAA 59.191 45.455 0.00 0.00 42.08 2.01
165 166 2.418692 CACACGCTTGTATGTGGGTAA 58.581 47.619 0.00 0.00 42.08 2.85
166 167 1.942127 GCACACGCTTGTATGTGGGTA 60.942 52.381 0.00 0.00 45.21 3.69
167 168 1.234615 GCACACGCTTGTATGTGGGT 61.235 55.000 0.00 0.00 45.21 4.51
168 169 1.501741 GCACACGCTTGTATGTGGG 59.498 57.895 0.00 0.00 45.21 4.61
169 170 1.132436 CGCACACGCTTGTATGTGG 59.868 57.895 0.00 0.00 45.21 4.17
171 172 1.222300 TTTCGCACACGCTTGTATGT 58.778 45.000 0.00 0.00 39.84 2.29
172 173 2.308347 TTTTCGCACACGCTTGTATG 57.692 45.000 0.00 0.00 39.84 2.39
207 208 4.041723 TCTATGATAACATCACGCACACG 58.958 43.478 0.00 0.00 43.01 4.49
216 217 8.590470 CATGTGCGATAAGTCTATGATAACATC 58.410 37.037 0.00 0.00 37.87 3.06
219 220 6.366061 TGCATGTGCGATAAGTCTATGATAAC 59.634 38.462 0.01 0.00 45.83 1.89
220 221 6.454795 TGCATGTGCGATAAGTCTATGATAA 58.545 36.000 0.01 0.00 45.83 1.75
221 222 6.024552 TGCATGTGCGATAAGTCTATGATA 57.975 37.500 0.01 0.00 45.83 2.15
222 223 4.886579 TGCATGTGCGATAAGTCTATGAT 58.113 39.130 0.01 0.00 45.83 2.45
223 224 4.320608 TGCATGTGCGATAAGTCTATGA 57.679 40.909 0.01 0.00 45.83 2.15
224 225 4.687483 TGATGCATGTGCGATAAGTCTATG 59.313 41.667 2.46 0.00 45.83 2.23
225 226 4.886579 TGATGCATGTGCGATAAGTCTAT 58.113 39.130 2.46 0.00 45.83 1.98
226 227 4.202151 ACTGATGCATGTGCGATAAGTCTA 60.202 41.667 2.46 0.00 45.83 2.59
227 228 3.129109 CTGATGCATGTGCGATAAGTCT 58.871 45.455 2.46 0.00 45.83 3.24
232 233 1.066908 TCGACTGATGCATGTGCGATA 59.933 47.619 2.46 0.00 45.83 2.92
235 236 0.042448 CATCGACTGATGCATGTGCG 60.042 55.000 2.46 2.49 45.06 5.34
244 245 3.577649 ACACGTTCTTCATCGACTGAT 57.422 42.857 0.00 0.00 32.72 2.90
247 248 4.857588 GTGATTACACGTTCTTCATCGACT 59.142 41.667 0.00 0.00 37.28 4.18
264 265 4.558226 ATGGCTGAACTCTGTGTGATTA 57.442 40.909 0.00 0.00 0.00 1.75
265 266 2.936919 TGGCTGAACTCTGTGTGATT 57.063 45.000 0.00 0.00 0.00 2.57
266 267 3.079578 CAATGGCTGAACTCTGTGTGAT 58.920 45.455 0.00 0.00 0.00 3.06
269 270 1.242076 GCAATGGCTGAACTCTGTGT 58.758 50.000 0.00 0.00 36.96 3.72
270 271 1.068748 GTGCAATGGCTGAACTCTGTG 60.069 52.381 0.00 0.00 41.91 3.66
271 272 1.242076 GTGCAATGGCTGAACTCTGT 58.758 50.000 0.00 0.00 41.91 3.41
274 275 3.308438 AAATGTGCAATGGCTGAACTC 57.692 42.857 0.00 0.00 41.91 3.01
295 304 4.158949 ACTGTATGTACGTGCCAGACAATA 59.841 41.667 18.27 0.00 34.02 1.90
299 308 2.649331 ACTGTATGTACGTGCCAGAC 57.351 50.000 18.27 10.56 0.00 3.51
317 326 5.928839 CACCTATAGCACACTATCATCCAAC 59.071 44.000 0.00 0.00 39.81 3.77
320 329 5.473931 CACACCTATAGCACACTATCATCC 58.526 45.833 0.00 0.00 39.81 3.51
323 332 3.704061 TGCACACCTATAGCACACTATCA 59.296 43.478 0.00 0.00 39.81 2.15
353 364 6.089551 GTGGACTATGTGCATACGACATATTC 59.910 42.308 0.00 0.00 36.11 1.75
355 366 5.470368 GTGGACTATGTGCATACGACATAT 58.530 41.667 0.00 0.00 36.11 1.78
361 372 1.852280 CACGTGGACTATGTGCATACG 59.148 52.381 7.95 0.00 39.29 3.06
383 394 3.515502 CTCTGACCACCATCCAAGTCTAA 59.484 47.826 0.00 0.00 0.00 2.10
403 414 0.107654 AACTGGTATTGGAGCGCCTC 60.108 55.000 8.34 0.22 34.31 4.70
406 417 1.296727 GGTAACTGGTATTGGAGCGC 58.703 55.000 0.00 0.00 0.00 5.92
408 419 3.577805 ATGGGTAACTGGTATTGGAGC 57.422 47.619 0.00 0.00 0.00 4.70
411 422 5.392595 CGTTGAAATGGGTAACTGGTATTGG 60.393 44.000 0.00 0.00 0.00 3.16
461 533 0.171903 ATGATTCGCAGCAAGCCAAC 59.828 50.000 0.00 0.00 41.38 3.77
508 580 1.872952 TCTAATGCGAATTCCATGCCG 59.127 47.619 9.35 0.00 0.00 5.69
514 586 4.380531 TGTCTCCATCTAATGCGAATTCC 58.619 43.478 0.00 0.00 0.00 3.01
614 687 5.090083 TGCGTTTTTAAGACTTGTTGACAC 58.910 37.500 0.00 0.00 0.00 3.67
615 688 5.106475 ACTGCGTTTTTAAGACTTGTTGACA 60.106 36.000 0.00 0.00 0.00 3.58
618 691 5.227184 GTCACTGCGTTTTTAAGACTTGTTG 59.773 40.000 0.00 0.00 0.00 3.33
621 694 4.904116 TGTCACTGCGTTTTTAAGACTTG 58.096 39.130 0.00 0.00 0.00 3.16
634 707 8.337532 TCTTATATTGATGATTTTGTCACTGCG 58.662 33.333 0.00 0.00 40.28 5.18
654 727 6.153000 GTCGCCTATCTTTCCTCCATCTTATA 59.847 42.308 0.00 0.00 0.00 0.98
714 971 4.394712 GGAGGTCCACCCTGCGTG 62.395 72.222 0.00 0.00 46.51 5.34
738 1039 0.642800 GCGAGATTCGTGTCTCTTGC 59.357 55.000 14.60 9.33 42.81 4.01
739 1040 1.982612 TGCGAGATTCGTGTCTCTTG 58.017 50.000 14.60 4.52 42.81 3.02
740 1041 2.329379 GTTGCGAGATTCGTGTCTCTT 58.671 47.619 14.60 0.00 42.81 2.85
741 1042 1.402984 GGTTGCGAGATTCGTGTCTCT 60.403 52.381 14.60 0.00 42.81 3.10
743 1044 0.603569 AGGTTGCGAGATTCGTGTCT 59.396 50.000 0.17 0.00 42.81 3.41
745 1046 0.389948 GGAGGTTGCGAGATTCGTGT 60.390 55.000 0.17 0.00 42.81 4.49
747 1048 0.537188 ATGGAGGTTGCGAGATTCGT 59.463 50.000 0.17 0.00 42.81 3.85
750 1051 0.035152 TGCATGGAGGTTGCGAGATT 60.035 50.000 0.00 0.00 43.10 2.40
752 1053 0.035152 AATGCATGGAGGTTGCGAGA 60.035 50.000 0.00 0.00 43.10 4.04
754 1055 0.608856 ACAATGCATGGAGGTTGCGA 60.609 50.000 8.45 0.00 43.10 5.10
755 1056 0.457166 CACAATGCATGGAGGTTGCG 60.457 55.000 8.45 0.00 43.10 4.85
758 1059 0.114954 ACCCACAATGCATGGAGGTT 59.885 50.000 15.56 0.00 39.87 3.50
759 1060 0.323725 GACCCACAATGCATGGAGGT 60.324 55.000 17.19 17.19 39.87 3.85
762 1063 1.005687 TCATGACCCACAATGCATGGA 59.994 47.619 8.45 0.00 39.87 3.41
763 1064 1.407618 CTCATGACCCACAATGCATGG 59.592 52.381 0.00 0.00 38.82 3.66
765 1066 1.108776 GCTCATGACCCACAATGCAT 58.891 50.000 0.00 0.00 0.00 3.96
766 1067 0.251253 TGCTCATGACCCACAATGCA 60.251 50.000 0.00 0.00 32.87 3.96
767 1068 0.889994 TTGCTCATGACCCACAATGC 59.110 50.000 0.00 0.00 0.00 3.56
768 1069 2.439409 TCTTGCTCATGACCCACAATG 58.561 47.619 0.00 0.00 0.00 2.82
769 1070 2.885135 TCTTGCTCATGACCCACAAT 57.115 45.000 0.00 0.00 0.00 2.71
770 1071 2.715046 GATCTTGCTCATGACCCACAA 58.285 47.619 0.00 0.00 0.00 3.33
771 1072 1.405933 CGATCTTGCTCATGACCCACA 60.406 52.381 0.00 0.00 0.00 4.17
773 1074 0.462581 GCGATCTTGCTCATGACCCA 60.463 55.000 0.00 0.00 0.00 4.51
774 1075 0.179062 AGCGATCTTGCTCATGACCC 60.179 55.000 0.00 0.00 42.95 4.46
775 1076 2.515926 TAGCGATCTTGCTCATGACC 57.484 50.000 0.00 0.00 45.87 4.02
845 2501 2.420022 CGCAAGTGGATACCTCCTTTTG 59.580 50.000 0.00 0.00 42.59 2.44
869 2525 2.747855 GCCACTGCCACTGCCTAC 60.748 66.667 0.00 0.00 36.33 3.18
918 2734 1.164041 CGACAAAGACGGCCCAGTTT 61.164 55.000 0.00 0.00 0.00 2.66
923 2739 2.830704 ATCGACGACAAAGACGGCCC 62.831 60.000 0.00 0.00 35.13 5.80
928 2744 1.619207 CGCGATCGACGACAAAGAC 59.381 57.895 21.57 0.00 45.77 3.01
1304 3120 3.333219 TTGGGGCAGCTCTCCTGG 61.333 66.667 0.00 0.00 42.03 4.45
1310 3126 2.908073 CGTGTTGTTGGGGCAGCTC 61.908 63.158 0.00 0.00 0.00 4.09
1312 3128 3.977244 CCGTGTTGTTGGGGCAGC 61.977 66.667 0.00 0.00 0.00 5.25
1364 3180 0.951040 GGAACTGCACGGTGGAGAAG 60.951 60.000 32.21 10.89 38.14 2.85
1443 3259 8.783833 TCAAGATCAAGAGGTTCATTAGAAAG 57.216 34.615 0.00 0.00 35.08 2.62
1503 3334 6.202516 TGAAAACTTGAACCAGTTTACAGG 57.797 37.500 4.84 0.00 44.62 4.00
1641 3472 0.677842 AGTACTTCTTGGCGGTCGTT 59.322 50.000 0.00 0.00 0.00 3.85
1689 3520 2.944429 GCGAGCGCGTAGATCCTA 59.056 61.111 12.44 0.00 40.36 2.94
1719 3550 4.829518 TGCGACGGCGTCATCTCG 62.830 66.667 35.62 24.44 44.10 4.04
1810 3641 1.748493 GTTGCACCAGACCACAAAAGA 59.252 47.619 0.00 0.00 0.00 2.52
1820 3651 0.685097 GTACCTCAGGTTGCACCAGA 59.315 55.000 0.00 4.63 41.95 3.86
1909 3740 3.027412 GCTCTGGAGTTACAGATGGAGA 58.973 50.000 0.00 0.00 45.67 3.71
1911 3742 2.111384 GGCTCTGGAGTTACAGATGGA 58.889 52.381 0.00 0.00 45.67 3.41
2047 4047 7.266922 TCATACACCAAACAAGAACCTTAAC 57.733 36.000 0.00 0.00 0.00 2.01
2058 4058 3.255395 CCTGCAACATCATACACCAAACA 59.745 43.478 0.00 0.00 0.00 2.83
2071 4071 4.038402 CACTCTTTTTCTTCCCTGCAACAT 59.962 41.667 0.00 0.00 0.00 2.71
2112 4112 0.110486 AGGACGGAACAACCAATGCT 59.890 50.000 0.00 0.00 38.90 3.79
2381 4389 0.035458 AACCACCTTCTCCGAGCTTG 59.965 55.000 0.00 0.00 0.00 4.01
2434 4442 0.254747 ATCACCCACCCGGTTATGTG 59.745 55.000 0.00 0.37 45.36 3.21
2438 4446 2.043992 CTGATATCACCCACCCGGTTA 58.956 52.381 0.00 0.00 45.36 2.85
2463 4473 1.899142 AGTCTTCCTCAGAGAAGGTGC 59.101 52.381 0.00 0.00 42.94 5.01
2496 4523 0.107017 TTTCCTGCCCATCTGCTAGC 60.107 55.000 8.10 8.10 0.00 3.42
2796 4831 4.987963 ATGTTCTCATCCATGGCAGATA 57.012 40.909 6.96 0.00 0.00 1.98
2799 4834 3.697542 TCAAATGTTCTCATCCATGGCAG 59.302 43.478 6.96 2.69 32.56 4.85
2803 4838 6.038936 TGCATAGTCAAATGTTCTCATCCATG 59.961 38.462 0.00 0.00 32.56 3.66
2839 4888 7.433131 CACCATTCATTTCACTATTACACATGC 59.567 37.037 0.00 0.00 0.00 4.06
2844 4893 7.643569 ATGCACCATTCATTTCACTATTACA 57.356 32.000 0.00 0.00 0.00 2.41
2845 4894 7.805071 GCTATGCACCATTCATTTCACTATTAC 59.195 37.037 0.00 0.00 0.00 1.89
2849 4898 5.439721 AGCTATGCACCATTCATTTCACTA 58.560 37.500 0.00 0.00 0.00 2.74
2851 4900 4.644103 AGCTATGCACCATTCATTTCAC 57.356 40.909 0.00 0.00 0.00 3.18
2863 4912 2.296471 ACTCCGGTGTATAGCTATGCAC 59.704 50.000 34.21 34.21 44.98 4.57
2864 4913 2.594131 ACTCCGGTGTATAGCTATGCA 58.406 47.619 19.21 19.21 0.00 3.96
2865 4914 3.662247 AACTCCGGTGTATAGCTATGC 57.338 47.619 16.77 15.48 0.00 3.14
2866 4915 4.982916 GTGAAACTCCGGTGTATAGCTATG 59.017 45.833 16.77 0.00 0.00 2.23
2867 4916 5.197682 GTGAAACTCCGGTGTATAGCTAT 57.802 43.478 10.03 11.77 0.00 2.97
2913 4962 5.897824 TCTTATATTTCTTGACGGAGGGAGT 59.102 40.000 0.00 0.00 0.00 3.85
2914 4963 6.406692 TCTTATATTTCTTGACGGAGGGAG 57.593 41.667 0.00 0.00 0.00 4.30
2915 4964 5.221461 GCTCTTATATTTCTTGACGGAGGGA 60.221 44.000 0.00 0.00 0.00 4.20
2916 4965 4.991687 GCTCTTATATTTCTTGACGGAGGG 59.008 45.833 0.00 0.00 0.00 4.30
2917 4966 4.681942 CGCTCTTATATTTCTTGACGGAGG 59.318 45.833 0.00 0.00 0.00 4.30
2918 4967 5.282510 ACGCTCTTATATTTCTTGACGGAG 58.717 41.667 0.00 0.00 0.00 4.63
2919 4968 5.258456 ACGCTCTTATATTTCTTGACGGA 57.742 39.130 0.00 0.00 0.00 4.69
2920 4969 5.968387 AACGCTCTTATATTTCTTGACGG 57.032 39.130 0.00 0.00 0.00 4.79
2921 4970 8.336498 TCTAAACGCTCTTATATTTCTTGACG 57.664 34.615 0.00 0.00 0.00 4.35
2932 4981 9.953697 CTAAAGTAGTGATCTAAACGCTCTTAT 57.046 33.333 0.00 0.00 0.00 1.73
2933 4982 8.954350 ACTAAAGTAGTGATCTAAACGCTCTTA 58.046 33.333 0.00 0.00 37.69 2.10
2934 4983 7.828712 ACTAAAGTAGTGATCTAAACGCTCTT 58.171 34.615 0.00 0.00 37.69 2.85
2935 4984 7.393841 ACTAAAGTAGTGATCTAAACGCTCT 57.606 36.000 0.00 0.00 37.69 4.09
2982 5031 8.077836 GCATATTTAGTACTGCCTCTGTAAAG 57.922 38.462 5.39 0.00 0.00 1.85
2992 5041 3.121738 ACCGGGCATATTTAGTACTGC 57.878 47.619 6.32 0.00 0.00 4.40
2993 5042 4.243270 GCTACCGGGCATATTTAGTACTG 58.757 47.826 6.32 0.00 0.00 2.74
3010 5059 1.102978 ATTGTGCCGGAAATGCTACC 58.897 50.000 5.05 0.00 0.00 3.18
3036 5085 3.817709 AAACAACCTTGGATGTGTTGG 57.182 42.857 3.35 0.00 42.75 3.77
3037 5086 7.090173 CCTTATAAACAACCTTGGATGTGTTG 58.910 38.462 3.35 0.00 43.76 3.33
3038 5087 6.780522 ACCTTATAAACAACCTTGGATGTGTT 59.219 34.615 3.35 3.49 0.00 3.32
3190 5322 2.932614 CTCCCAGCTCAGTGTATTTTCG 59.067 50.000 0.00 0.00 0.00 3.46
3423 5555 4.862574 CGTGGATGTGTGAATATATACGGG 59.137 45.833 0.00 0.00 0.00 5.28
3426 5558 7.358931 CCGTTTCGTGGATGTGTGAATATATAC 60.359 40.741 0.00 0.00 0.00 1.47
3431 5569 2.997303 CCGTTTCGTGGATGTGTGAATA 59.003 45.455 0.00 0.00 0.00 1.75
3439 5577 1.934589 TATCTGCCGTTTCGTGGATG 58.065 50.000 0.00 0.00 0.00 3.51
3446 5584 0.778815 CGCTCGATATCTGCCGTTTC 59.221 55.000 0.34 0.00 0.00 2.78
3485 5623 0.392193 ACCTCTGCAAAGGATGAGCG 60.392 55.000 14.57 0.00 38.87 5.03
3588 5726 2.477525 GCTGTTCCGTCTCCTAGTTACG 60.478 54.545 2.70 2.70 36.42 3.18
3687 5826 1.700955 TATACTCCCTCCGTTCCAGC 58.299 55.000 0.00 0.00 0.00 4.85
3733 5964 5.071250 TCCACACCTGTTAGATTGTTAGTGT 59.929 40.000 0.00 0.00 37.69 3.55
3816 6047 0.532862 ATCGTAATGCCTGGCTTCGG 60.533 55.000 21.03 6.67 0.00 4.30
4078 6312 0.036765 GCCTCAACATCACACCGGTA 60.037 55.000 6.87 0.00 0.00 4.02
4184 6418 4.073293 GGTAACTGGACCCATAGACATG 57.927 50.000 0.00 0.00 32.88 3.21
4275 6511 3.129287 CGGACAAAGAAAATGATCCAGGG 59.871 47.826 0.00 0.00 0.00 4.45
4285 6521 2.432510 ACCAAATGGCGGACAAAGAAAA 59.567 40.909 0.00 0.00 39.32 2.29
4291 6527 1.072489 TCTACACCAAATGGCGGACAA 59.928 47.619 0.00 0.00 39.32 3.18
4293 6529 1.066430 TCTCTACACCAAATGGCGGAC 60.066 52.381 0.00 0.00 39.32 4.79
4335 6571 8.158169 TGCTATATTTTGATGCCTCTTTAGTG 57.842 34.615 0.00 0.00 0.00 2.74
4336 6572 8.930846 ATGCTATATTTTGATGCCTCTTTAGT 57.069 30.769 0.00 0.00 0.00 2.24
4337 6573 9.006839 TGATGCTATATTTTGATGCCTCTTTAG 57.993 33.333 0.00 0.00 0.00 1.85
4338 6574 8.922931 TGATGCTATATTTTGATGCCTCTTTA 57.077 30.769 0.00 0.00 0.00 1.85
4339 6575 7.828508 TGATGCTATATTTTGATGCCTCTTT 57.171 32.000 0.00 0.00 0.00 2.52
4342 6578 7.428020 TGTTTGATGCTATATTTTGATGCCTC 58.572 34.615 0.00 0.00 0.00 4.70
4343 6579 7.286087 TCTGTTTGATGCTATATTTTGATGCCT 59.714 33.333 0.00 0.00 0.00 4.75
4355 6601 7.578310 ATGCTTTGTATCTGTTTGATGCTAT 57.422 32.000 0.00 0.00 38.39 2.97
4386 6632 5.950544 AACTATGTAGTGGCAGGATGTTA 57.049 39.130 0.00 0.00 35.77 2.41
4391 6637 5.453339 GCATCTTAACTATGTAGTGGCAGGA 60.453 44.000 0.00 0.00 36.50 3.86
4394 6640 5.116180 GTGCATCTTAACTATGTAGTGGCA 58.884 41.667 0.00 0.00 36.50 4.92
4421 6667 2.094659 CGGACTGATGGTGTGTCGC 61.095 63.158 0.00 0.00 0.00 5.19
4456 6702 5.068460 TGGCTTTACTGTTGCAGTTATGTTT 59.932 36.000 7.11 0.00 42.59 2.83
4490 6736 8.180706 TGCATATTTGGCATAGACATATTGTT 57.819 30.769 0.00 0.00 36.11 2.83
4494 6740 6.724351 TCCTGCATATTTGGCATAGACATAT 58.276 36.000 0.00 0.00 41.06 1.78
4498 6744 4.645535 TCTCCTGCATATTTGGCATAGAC 58.354 43.478 0.00 0.00 41.06 2.59
4499 6745 4.980339 TCTCCTGCATATTTGGCATAGA 57.020 40.909 0.00 0.00 41.06 1.98
4510 6756 1.131638 GGTCCACCATCTCCTGCATA 58.868 55.000 0.00 0.00 35.64 3.14
4515 6761 0.760945 GGATCGGTCCACCATCTCCT 60.761 60.000 10.69 0.00 44.42 3.69
4516 6762 1.749033 GGATCGGTCCACCATCTCC 59.251 63.158 10.69 0.00 44.42 3.71
4569 6815 4.329545 GAGAGGGTGGCCACGCAA 62.330 66.667 43.12 5.55 45.43 4.85
4604 6850 3.049708 AGTATCGACCGATATCCACGA 57.950 47.619 14.18 13.16 39.04 4.35
4609 6855 5.578727 ACCTTACGTAGTATCGACCGATATC 59.421 44.000 14.18 8.87 45.21 1.63
4613 6859 2.866156 CACCTTACGTAGTATCGACCGA 59.134 50.000 0.00 0.00 45.21 4.69
4614 6860 2.600792 GCACCTTACGTAGTATCGACCG 60.601 54.545 0.00 0.00 45.21 4.79
4620 6866 4.338682 CCTCTTCTGCACCTTACGTAGTAT 59.661 45.833 0.00 0.00 45.21 2.12
4625 6871 1.546476 CTCCTCTTCTGCACCTTACGT 59.454 52.381 0.00 0.00 0.00 3.57
4627 6873 1.552792 AGCTCCTCTTCTGCACCTTAC 59.447 52.381 0.00 0.00 0.00 2.34
4635 6881 2.611518 CAACCGTAAGCTCCTCTTCTG 58.388 52.381 0.00 0.00 36.25 3.02
4640 6886 0.108281 GACCCAACCGTAAGCTCCTC 60.108 60.000 0.00 0.00 0.00 3.71
4641 6887 0.544595 AGACCCAACCGTAAGCTCCT 60.545 55.000 0.00 0.00 0.00 3.69
4642 6888 0.323957 AAGACCCAACCGTAAGCTCC 59.676 55.000 0.00 0.00 0.00 4.70
4643 6889 1.439679 CAAGACCCAACCGTAAGCTC 58.560 55.000 0.00 0.00 0.00 4.09
4644 6890 0.036306 CCAAGACCCAACCGTAAGCT 59.964 55.000 0.00 0.00 0.00 3.74
4645 6891 1.583495 GCCAAGACCCAACCGTAAGC 61.583 60.000 0.00 0.00 0.00 3.09
4646 6892 0.958876 GGCCAAGACCCAACCGTAAG 60.959 60.000 0.00 0.00 0.00 2.34
4647 6893 1.073548 GGCCAAGACCCAACCGTAA 59.926 57.895 0.00 0.00 0.00 3.18
4648 6894 1.493854 ATGGCCAAGACCCAACCGTA 61.494 55.000 10.96 0.00 35.67 4.02
4649 6895 2.764637 GATGGCCAAGACCCAACCGT 62.765 60.000 10.96 0.00 35.67 4.83
4650 6896 2.035626 ATGGCCAAGACCCAACCG 59.964 61.111 10.96 0.00 35.67 4.44
4651 6897 1.076549 TGATGGCCAAGACCCAACC 59.923 57.895 10.96 0.00 35.67 3.77
4652 6898 0.539438 TGTGATGGCCAAGACCCAAC 60.539 55.000 10.96 0.99 35.67 3.77
4653 6899 0.409092 ATGTGATGGCCAAGACCCAA 59.591 50.000 10.96 0.00 35.67 4.12
4654 6900 0.409092 AATGTGATGGCCAAGACCCA 59.591 50.000 10.96 2.19 36.66 4.51
4655 6901 0.819582 CAATGTGATGGCCAAGACCC 59.180 55.000 10.96 0.00 0.00 4.46
4656 6902 1.203052 CACAATGTGATGGCCAAGACC 59.797 52.381 10.96 0.00 35.23 3.85
4657 6903 2.161855 TCACAATGTGATGGCCAAGAC 58.838 47.619 10.96 10.36 37.67 3.01
4658 6904 2.583024 TCACAATGTGATGGCCAAGA 57.417 45.000 10.96 0.00 37.67 3.02
4666 6912 8.364894 CATTTGATAATGGGATCACAATGTGAT 58.635 33.333 26.87 26.87 44.25 3.06
4667 6913 7.718525 CATTTGATAATGGGATCACAATGTGA 58.281 34.615 19.08 19.08 40.82 3.58
4668 6914 7.940178 CATTTGATAATGGGATCACAATGTG 57.060 36.000 0.00 7.12 37.97 3.21
4681 6927 6.802608 AGACATGAGTTGCCATTTGATAATG 58.197 36.000 0.00 0.00 40.70 1.90
4682 6928 8.573885 CATAGACATGAGTTGCCATTTGATAAT 58.426 33.333 0.00 0.00 33.67 1.28
4683 6929 7.469043 GCATAGACATGAGTTGCCATTTGATAA 60.469 37.037 0.00 0.00 33.67 1.75
4684 6930 6.016860 GCATAGACATGAGTTGCCATTTGATA 60.017 38.462 0.00 0.00 33.67 2.15
4685 6931 5.221185 GCATAGACATGAGTTGCCATTTGAT 60.221 40.000 0.00 0.00 33.67 2.57
4686 6932 4.096833 GCATAGACATGAGTTGCCATTTGA 59.903 41.667 0.00 0.00 33.67 2.69
4687 6933 4.097437 AGCATAGACATGAGTTGCCATTTG 59.903 41.667 0.00 0.00 33.67 2.32
4688 6934 4.275810 AGCATAGACATGAGTTGCCATTT 58.724 39.130 0.00 0.00 33.67 2.32
4689 6935 3.894759 AGCATAGACATGAGTTGCCATT 58.105 40.909 0.00 0.00 33.67 3.16
4690 6936 3.572632 AGCATAGACATGAGTTGCCAT 57.427 42.857 0.00 0.00 33.67 4.40
4691 6937 3.354948 AAGCATAGACATGAGTTGCCA 57.645 42.857 0.00 0.00 33.67 4.92
4692 6938 5.118990 TCTTAAGCATAGACATGAGTTGCC 58.881 41.667 0.00 0.00 33.67 4.52
4693 6939 6.668541 TTCTTAAGCATAGACATGAGTTGC 57.331 37.500 0.00 3.12 33.67 4.17
4694 6940 7.414540 GGGTTTCTTAAGCATAGACATGAGTTG 60.415 40.741 0.00 0.00 33.67 3.16
4695 6941 6.599638 GGGTTTCTTAAGCATAGACATGAGTT 59.400 38.462 0.00 0.00 33.67 3.01
4696 6942 6.116126 GGGTTTCTTAAGCATAGACATGAGT 58.884 40.000 0.00 0.00 33.67 3.41
4697 6943 5.529060 GGGGTTTCTTAAGCATAGACATGAG 59.471 44.000 0.00 0.00 33.67 2.90
4698 6944 5.045213 TGGGGTTTCTTAAGCATAGACATGA 60.045 40.000 0.00 0.00 33.67 3.07
4699 6945 5.192927 TGGGGTTTCTTAAGCATAGACATG 58.807 41.667 0.00 0.00 33.42 3.21
4700 6946 5.450818 TGGGGTTTCTTAAGCATAGACAT 57.549 39.130 0.00 0.00 33.42 3.06
4701 6947 4.919774 TGGGGTTTCTTAAGCATAGACA 57.080 40.909 0.00 0.00 33.42 3.41
4702 6948 4.398358 GGTTGGGGTTTCTTAAGCATAGAC 59.602 45.833 0.00 0.00 33.42 2.59
4703 6949 4.043561 TGGTTGGGGTTTCTTAAGCATAGA 59.956 41.667 0.00 0.00 33.42 1.98
4704 6950 4.340617 TGGTTGGGGTTTCTTAAGCATAG 58.659 43.478 0.00 0.00 33.42 2.23
4705 6951 4.390129 TGGTTGGGGTTTCTTAAGCATA 57.610 40.909 0.00 0.00 33.42 3.14
4706 6952 3.252554 TGGTTGGGGTTTCTTAAGCAT 57.747 42.857 0.00 0.00 33.42 3.79
4707 6953 2.757894 TGGTTGGGGTTTCTTAAGCA 57.242 45.000 0.00 0.00 33.42 3.91
4708 6954 3.431415 AGATGGTTGGGGTTTCTTAAGC 58.569 45.455 0.00 0.00 0.00 3.09
4709 6955 5.538433 TCAAAGATGGTTGGGGTTTCTTAAG 59.462 40.000 0.00 0.00 0.00 1.85
4710 6956 5.459505 TCAAAGATGGTTGGGGTTTCTTAA 58.540 37.500 0.00 0.00 0.00 1.85
4711 6957 5.068215 TCAAAGATGGTTGGGGTTTCTTA 57.932 39.130 0.00 0.00 0.00 2.10
4712 6958 3.922375 TCAAAGATGGTTGGGGTTTCTT 58.078 40.909 0.00 0.00 0.00 2.52
4713 6959 3.611025 TCAAAGATGGTTGGGGTTTCT 57.389 42.857 0.00 0.00 0.00 2.52
4714 6960 3.831911 TGATCAAAGATGGTTGGGGTTTC 59.168 43.478 0.00 0.00 0.00 2.78
4715 6961 3.855668 TGATCAAAGATGGTTGGGGTTT 58.144 40.909 0.00 0.00 0.00 3.27
4716 6962 3.541242 TGATCAAAGATGGTTGGGGTT 57.459 42.857 0.00 0.00 0.00 4.11
4717 6963 3.165071 GTTGATCAAAGATGGTTGGGGT 58.835 45.455 10.35 0.00 0.00 4.95
4718 6964 2.164219 CGTTGATCAAAGATGGTTGGGG 59.836 50.000 15.34 0.00 0.00 4.96
4719 6965 3.081061 TCGTTGATCAAAGATGGTTGGG 58.919 45.455 18.50 0.00 0.00 4.12
4720 6966 3.426695 GCTCGTTGATCAAAGATGGTTGG 60.427 47.826 21.83 11.77 0.00 3.77
4721 6967 3.438087 AGCTCGTTGATCAAAGATGGTTG 59.562 43.478 21.83 12.38 0.00 3.77
4722 6968 3.679389 AGCTCGTTGATCAAAGATGGTT 58.321 40.909 21.83 8.86 0.00 3.67
4723 6969 3.340814 AGCTCGTTGATCAAAGATGGT 57.659 42.857 21.83 17.63 0.00 3.55
4724 6970 4.437239 ACTAGCTCGTTGATCAAAGATGG 58.563 43.478 21.83 14.18 0.00 3.51
4725 6971 5.347342 AGACTAGCTCGTTGATCAAAGATG 58.653 41.667 21.83 16.63 0.00 2.90
4726 6972 5.590530 AGACTAGCTCGTTGATCAAAGAT 57.409 39.130 21.83 12.82 0.00 2.40
4727 6973 5.163642 GGTAGACTAGCTCGTTGATCAAAGA 60.164 44.000 20.62 20.62 0.00 2.52
4728 6974 5.038033 GGTAGACTAGCTCGTTGATCAAAG 58.962 45.833 10.35 12.64 0.00 2.77
4729 6975 4.438336 CGGTAGACTAGCTCGTTGATCAAA 60.438 45.833 10.35 0.00 0.00 2.69
4730 6976 3.064958 CGGTAGACTAGCTCGTTGATCAA 59.935 47.826 3.38 3.38 0.00 2.57
4731 6977 2.612672 CGGTAGACTAGCTCGTTGATCA 59.387 50.000 9.85 0.00 0.00 2.92
4732 6978 2.871022 TCGGTAGACTAGCTCGTTGATC 59.129 50.000 9.85 0.00 0.00 2.92
4733 6979 2.915349 TCGGTAGACTAGCTCGTTGAT 58.085 47.619 9.85 0.00 0.00 2.57
4734 6980 2.391616 TCGGTAGACTAGCTCGTTGA 57.608 50.000 9.85 0.00 0.00 3.18
4735 6981 3.482722 TTTCGGTAGACTAGCTCGTTG 57.517 47.619 9.85 0.00 0.00 4.10
4736 6982 4.483311 CTTTTTCGGTAGACTAGCTCGTT 58.517 43.478 9.85 0.00 0.00 3.85
4737 6983 3.119566 CCTTTTTCGGTAGACTAGCTCGT 60.120 47.826 9.85 0.00 0.00 4.18
4738 6984 3.436496 CCTTTTTCGGTAGACTAGCTCG 58.564 50.000 9.85 2.45 0.00 5.03
4739 6985 3.119065 AGCCTTTTTCGGTAGACTAGCTC 60.119 47.826 9.85 0.00 0.00 4.09
4740 6986 2.832733 AGCCTTTTTCGGTAGACTAGCT 59.167 45.455 9.85 0.00 0.00 3.32
4741 6987 2.930682 CAGCCTTTTTCGGTAGACTAGC 59.069 50.000 1.37 1.37 0.00 3.42
4747 6993 0.442699 GCGACAGCCTTTTTCGGTAG 59.557 55.000 0.00 0.00 37.42 3.18
4762 7008 4.779987 CTTTATTTATAAAGCGGGGCGAC 58.220 43.478 8.78 0.00 41.69 5.19
4799 7047 3.993920 TCCGTTGTTACCTTGTTACTCC 58.006 45.455 0.00 0.00 0.00 3.85
4889 7157 2.281484 GCCCACAGCGGAACTTGA 60.281 61.111 0.00 0.00 36.56 3.02
4938 7207 2.281208 CCGTCTTGGGGCGTTTCA 60.281 61.111 0.00 0.00 0.00 2.69
5048 7334 1.773052 CCATCACCTCCATCATCACCT 59.227 52.381 0.00 0.00 0.00 4.00
5080 7375 2.033194 GCTTTGGCGACCGCTTAGT 61.033 57.895 14.25 0.00 41.60 2.24
5165 7460 4.092968 GCTGTGGACTGTTAGGAATAAACG 59.907 45.833 0.00 0.00 0.00 3.60
5194 7489 2.037847 GCCATTGGGGTCCTTGCT 59.962 61.111 4.53 0.00 39.65 3.91


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.