Multiple sequence alignment - TraesCS2A01G215800

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS2A01G215800 chr2A 100.000 5201 0 0 1 5201 202888201 202883001 0.000000e+00 9605.0
1 TraesCS2A01G215800 chr2A 87.797 295 29 7 4839 5128 561298744 561299036 6.450000e-89 339.0
2 TraesCS2A01G215800 chr2A 75.495 657 126 24 1139 1779 203321774 203321137 6.590000e-74 289.0
3 TraesCS2A01G215800 chr2A 77.949 195 37 4 1 192 203464852 203465043 3.290000e-22 117.0
4 TraesCS2A01G215800 chr2A 79.114 158 33 0 35 192 203461225 203461382 5.510000e-20 110.0
5 TraesCS2A01G215800 chr2A 76.562 192 45 0 1 192 203537120 203537311 7.120000e-19 106.0
6 TraesCS2A01G215800 chr2A 83.178 107 16 2 3629 3735 203315597 203315701 4.290000e-16 97.1
7 TraesCS2A01G215800 chr2D 94.650 2486 91 17 2389 4852 188834251 188831786 0.000000e+00 3816.0
8 TraesCS2A01G215800 chr2D 92.080 1692 84 16 625 2294 188835912 188834249 0.000000e+00 2337.0
9 TraesCS2A01G215800 chr2D 91.691 674 30 5 1 651 188836591 188835921 0.000000e+00 911.0
10 TraesCS2A01G215800 chr2D 74.012 658 134 26 1139 1779 189389542 189388905 3.130000e-57 233.0
11 TraesCS2A01G215800 chr2D 75.521 192 47 0 1 192 189704952 189705143 1.540000e-15 95.3
12 TraesCS2A01G215800 chr2B 91.687 2093 118 24 597 2664 244920276 244918215 0.000000e+00 2850.0
13 TraesCS2A01G215800 chr2B 95.984 1469 52 5 2740 4207 244918218 244916756 0.000000e+00 2379.0
14 TraesCS2A01G215800 chr2B 90.141 568 29 11 1 542 244934792 244934226 0.000000e+00 713.0
15 TraesCS2A01G215800 chr2B 86.613 493 38 9 4288 4755 244916717 244916228 2.150000e-143 520.0
16 TraesCS2A01G215800 chr2B 88.294 299 26 9 4851 5145 697672330 697672623 2.980000e-92 350.0
17 TraesCS2A01G215800 chr2B 76.316 418 75 16 1187 1592 245794018 245793613 8.830000e-48 202.0
18 TraesCS2A01G215800 chr2B 80.380 158 31 0 35 192 246003881 246004038 2.540000e-23 121.0
19 TraesCS2A01G215800 chr6D 83.658 2056 266 38 2174 4216 5480159 5478161 0.000000e+00 1871.0
20 TraesCS2A01G215800 chr6D 82.848 927 150 7 959 1877 5481629 5480704 0.000000e+00 822.0
21 TraesCS2A01G215800 chr6D 88.514 296 25 9 4851 5142 327022153 327021863 2.980000e-92 350.0
22 TraesCS2A01G215800 chr6D 82.474 97 15 2 3632 3727 13276936 13276841 3.340000e-12 84.2
23 TraesCS2A01G215800 chr3B 89.831 295 22 8 4839 5128 377115416 377115125 6.360000e-99 372.0
24 TraesCS2A01G215800 chr3B 81.560 141 22 4 4487 4626 5076858 5076995 4.260000e-21 113.0
25 TraesCS2A01G215800 chr3B 80.986 142 23 4 4486 4626 4221413 4221551 5.510000e-20 110.0
26 TraesCS2A01G215800 chr3D 88.814 295 26 7 4839 5128 255424689 255424397 6.410000e-94 355.0
27 TraesCS2A01G215800 chr3A 88.514 296 26 8 4839 5128 319962610 319962317 8.290000e-93 351.0
28 TraesCS2A01G215800 chr3A 85.625 320 38 8 4831 5143 587584713 587585031 3.880000e-86 329.0
29 TraesCS2A01G215800 chr5D 88.396 293 29 5 4839 5128 451067134 451067424 1.070000e-91 348.0
30 TraesCS2A01G215800 chr5B 77.931 580 112 13 2995 3562 610662937 610662362 1.070000e-91 348.0
31 TraesCS2A01G215800 chr5B 86.111 108 7 6 4516 4620 658446616 658446718 5.510000e-20 110.0
32 TraesCS2A01G215800 chr5B 100.000 28 0 0 2308 2335 284835414 284835387 9.000000e-03 52.8
33 TraesCS2A01G215800 chr5A 88.968 281 27 4 4851 5128 171143141 171142862 1.390000e-90 344.0
34 TraesCS2A01G215800 chrUn 77.322 463 91 10 3302 3761 260128537 260128988 1.440000e-65 261.0
35 TraesCS2A01G215800 chrUn 77.106 463 92 10 3302 3761 217764994 217764543 6.680000e-64 255.0
36 TraesCS2A01G215800 chrUn 77.106 463 92 10 3302 3761 246306172 246305721 6.680000e-64 255.0
37 TraesCS2A01G215800 chrUn 77.106 463 92 10 3302 3761 313906804 313907255 6.680000e-64 255.0
38 TraesCS2A01G215800 chrUn 81.633 98 15 3 3632 3728 71413437 71413342 1.550000e-10 78.7
39 TraesCS2A01G215800 chrUn 81.633 98 15 3 3632 3728 71472498 71472403 1.550000e-10 78.7
40 TraesCS2A01G215800 chrUn 80.412 97 18 1 3632 3728 371025411 371025316 7.220000e-09 73.1
41 TraesCS2A01G215800 chr6B 81.992 261 45 2 3302 3561 4388342 4388601 2.440000e-53 220.0
42 TraesCS2A01G215800 chr6B 85.577 104 14 1 4490 4593 343040929 343040827 1.980000e-19 108.0
43 TraesCS2A01G215800 chr6B 81.915 94 15 2 3632 3724 23544125 23544217 1.550000e-10 78.7
44 TraesCS2A01G215800 chr1B 83.846 130 16 3 4492 4619 98903306 98903180 9.150000e-23 119.0
45 TraesCS2A01G215800 chr1B 80.142 141 24 3 4487 4627 390427082 390427218 9.210000e-18 102.0
46 TraesCS2A01G215800 chr1D 87.129 101 9 2 4521 4619 62112412 62112314 1.530000e-20 111.0
47 TraesCS2A01G215800 chr6A 87.037 54 7 0 53 106 528920062 528920009 1.560000e-05 62.1


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS2A01G215800 chr2A 202883001 202888201 5200 True 9605.000000 9605 100.000 1 5201 1 chr2A.!!$R1 5200
1 TraesCS2A01G215800 chr2A 203321137 203321774 637 True 289.000000 289 75.495 1139 1779 1 chr2A.!!$R2 640
2 TraesCS2A01G215800 chr2D 188831786 188836591 4805 True 2354.666667 3816 92.807 1 4852 3 chr2D.!!$R2 4851
3 TraesCS2A01G215800 chr2D 189388905 189389542 637 True 233.000000 233 74.012 1139 1779 1 chr2D.!!$R1 640
4 TraesCS2A01G215800 chr2B 244916228 244920276 4048 True 1916.333333 2850 91.428 597 4755 3 chr2B.!!$R3 4158
5 TraesCS2A01G215800 chr2B 244934226 244934792 566 True 713.000000 713 90.141 1 542 1 chr2B.!!$R1 541
6 TraesCS2A01G215800 chr6D 5478161 5481629 3468 True 1346.500000 1871 83.253 959 4216 2 chr6D.!!$R3 3257
7 TraesCS2A01G215800 chr5B 610662362 610662937 575 True 348.000000 348 77.931 2995 3562 1 chr5B.!!$R2 567

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
548 605 0.099259 TGATACGGTTAGGTCGCGTG 59.901 55.000 5.77 0.0 0.00 5.34 F
817 917 0.393402 TGGCTGCTCACCATTAGCTG 60.393 55.000 0.00 0.0 40.73 4.24 F
1815 1944 0.170561 TTCCGCAGTTCGTAGAGAGC 59.829 55.000 0.00 0.0 38.43 4.09 F
1867 1996 1.073284 GGGAAGGTGAGTTGGCTGTAA 59.927 52.381 0.00 0.0 0.00 2.41 F
3643 4253 1.146041 TCACAGCGGATACATGGCC 59.854 57.895 0.00 0.0 0.00 5.36 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1700 1829 0.471780 TCCTGTCCTGCCTCTGAACA 60.472 55.00 0.00 0.00 0.00 3.18 R
2472 2981 0.973632 AAGTACACCACAGCGATGGA 59.026 50.00 15.40 0.00 43.02 3.41 R
3803 4413 1.227999 TGGCTGCGTGCAGAGTTTAC 61.228 55.00 25.09 6.22 46.30 2.01 R
3823 4433 5.886960 ATTCAGACATTGTTACCAGAAGC 57.113 39.13 0.00 0.00 0.00 3.86 R
5144 5779 0.035534 TATCCCACTGCAACGCACAT 60.036 50.00 0.00 0.00 33.79 3.21 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
288 298 3.283812 AACGCGAGGAGGAGGAGGA 62.284 63.158 15.93 0.00 0.00 3.71
289 299 2.904866 CGCGAGGAGGAGGAGGAG 60.905 72.222 0.00 0.00 0.00 3.69
290 300 2.520741 GCGAGGAGGAGGAGGAGG 60.521 72.222 0.00 0.00 0.00 4.30
310 320 3.484547 GGCGGCGAGTTGGTAACG 61.485 66.667 12.98 0.00 42.51 3.18
320 330 1.968493 AGTTGGTAACGGAGAGCAAGA 59.032 47.619 0.00 0.00 42.51 3.02
526 573 2.853235 TGAGTAGAGTGAGGTCGTGA 57.147 50.000 0.00 0.00 0.00 4.35
533 590 4.157849 AGAGTGAGGTCGTGATCTGATA 57.842 45.455 0.00 0.00 0.00 2.15
543 600 3.562973 TCGTGATCTGATACGGTTAGGTC 59.437 47.826 14.86 0.00 40.48 3.85
548 605 0.099259 TGATACGGTTAGGTCGCGTG 59.901 55.000 5.77 0.00 0.00 5.34
570 627 1.477700 CGCATGGTGGAATTGGTCAAT 59.522 47.619 0.00 0.00 0.00 2.57
637 694 1.266175 TGTTCTAGATAGCTACGGCGC 59.734 52.381 6.90 0.00 44.37 6.53
638 695 1.536331 GTTCTAGATAGCTACGGCGCT 59.464 52.381 6.90 6.00 44.37 5.92
669 757 4.202398 ACTGGTCAGTGTCAAGATCAACAT 60.202 41.667 2.46 0.00 40.75 2.71
682 772 8.567948 GTCAAGATCAACATAGAAAACTTGGAA 58.432 33.333 0.00 0.00 35.64 3.53
688 778 8.364129 TCAACATAGAAAACTTGGAAAAATGC 57.636 30.769 0.00 0.00 0.00 3.56
689 779 8.203485 TCAACATAGAAAACTTGGAAAAATGCT 58.797 29.630 0.00 0.00 0.00 3.79
690 780 8.490355 CAACATAGAAAACTTGGAAAAATGCTC 58.510 33.333 0.00 0.00 0.00 4.26
711 806 8.873215 TGCTCTCAAATAAACTGTATAGTAGC 57.127 34.615 0.00 0.00 35.69 3.58
714 809 6.921857 TCTCAAATAAACTGTATAGTAGCGCC 59.078 38.462 2.29 0.00 35.69 6.53
755 855 9.810231 TTACGTATTCGGTTACAAATTCTTTTC 57.190 29.630 0.00 0.00 41.85 2.29
765 865 9.696917 GGTTACAAATTCTTTTCATCAACAGAT 57.303 29.630 0.00 0.00 0.00 2.90
781 881 9.734620 CATCAACAGATAAAACTTGAAGAAACA 57.265 29.630 0.00 0.00 0.00 2.83
807 907 1.202915 TCAAGGTGAAATGGCTGCTCA 60.203 47.619 0.00 0.00 0.00 4.26
816 916 0.549950 ATGGCTGCTCACCATTAGCT 59.450 50.000 0.00 0.00 45.86 3.32
817 917 0.393402 TGGCTGCTCACCATTAGCTG 60.393 55.000 0.00 0.00 40.73 4.24
818 918 0.393537 GGCTGCTCACCATTAGCTGT 60.394 55.000 0.00 0.00 40.73 4.40
819 919 1.012841 GCTGCTCACCATTAGCTGTC 58.987 55.000 0.00 0.00 40.73 3.51
820 920 1.676916 GCTGCTCACCATTAGCTGTCA 60.677 52.381 0.00 0.00 40.73 3.58
821 921 2.277969 CTGCTCACCATTAGCTGTCAG 58.722 52.381 0.00 0.00 40.73 3.51
862 962 2.407090 GCAGTCAACAAATGCTTTCCC 58.593 47.619 0.00 0.00 37.00 3.97
901 1001 1.016627 CCACCTGCCAATGATACACG 58.983 55.000 0.00 0.00 0.00 4.49
1066 1180 1.682684 GCGACCTTCCTCCTCTCCA 60.683 63.158 0.00 0.00 0.00 3.86
1160 1274 1.070577 CAGCAACTACACGCAGAACAC 60.071 52.381 0.00 0.00 0.00 3.32
1224 1338 1.671742 GAACGCCTCCTTGTCTCCA 59.328 57.895 0.00 0.00 0.00 3.86
1227 1341 2.270527 GCCTCCTTGTCTCCAGCC 59.729 66.667 0.00 0.00 0.00 4.85
1228 1342 2.297129 GCCTCCTTGTCTCCAGCCT 61.297 63.158 0.00 0.00 0.00 4.58
1536 1665 4.680237 CTCCTCAACGCCACCGCA 62.680 66.667 0.00 0.00 38.22 5.69
1606 1735 2.154798 CTTCGGCGACAGGAGGAACA 62.155 60.000 10.16 0.00 0.00 3.18
1815 1944 0.170561 TTCCGCAGTTCGTAGAGAGC 59.829 55.000 0.00 0.00 38.43 4.09
1867 1996 1.073284 GGGAAGGTGAGTTGGCTGTAA 59.927 52.381 0.00 0.00 0.00 2.41
1883 2012 5.418840 TGGCTGTAAGAAGGGAAATCATTTC 59.581 40.000 0.97 0.97 35.75 2.17
1944 2107 7.655236 TTTATTGGTTCTTTGATGTGCAATG 57.345 32.000 0.00 0.00 36.15 2.82
2003 2176 3.848377 ACGTTTAGGAATAAGGGGGAGTT 59.152 43.478 0.00 0.00 0.00 3.01
2125 2325 6.485648 CCTGCTCATCATAAGACATGAATCAA 59.514 38.462 0.00 0.00 0.00 2.57
2231 2641 5.333263 GCCAGTGTGATGCAAATACAAAAAC 60.333 40.000 0.00 0.00 0.00 2.43
2239 2649 7.793427 GTGATGCAAATACAAAAACAACATGAC 59.207 33.333 0.00 0.00 0.00 3.06
2244 2654 7.439655 GCAAATACAAAAACAACATGACCCTTA 59.560 33.333 0.00 0.00 0.00 2.69
2271 2681 5.291971 ACAGACAATCTTGCAAATGGTTTC 58.708 37.500 0.00 0.00 0.00 2.78
2293 2802 2.092968 TGTGCTCTGAAACTCACAAGGT 60.093 45.455 0.00 0.00 36.62 3.50
2294 2803 2.945668 GTGCTCTGAAACTCACAAGGTT 59.054 45.455 0.00 0.00 34.21 3.50
2295 2804 3.378427 GTGCTCTGAAACTCACAAGGTTT 59.622 43.478 0.00 0.00 39.25 3.27
2296 2805 4.016444 TGCTCTGAAACTCACAAGGTTTT 58.984 39.130 0.00 0.00 37.07 2.43
2297 2806 4.096382 TGCTCTGAAACTCACAAGGTTTTC 59.904 41.667 0.00 0.00 37.07 2.29
2298 2807 4.336713 GCTCTGAAACTCACAAGGTTTTCT 59.663 41.667 0.00 0.00 37.07 2.52
2299 2808 5.163612 GCTCTGAAACTCACAAGGTTTTCTT 60.164 40.000 0.00 0.00 37.07 2.52
2300 2809 6.038271 GCTCTGAAACTCACAAGGTTTTCTTA 59.962 38.462 0.00 0.00 37.07 2.10
2301 2810 7.553881 TCTGAAACTCACAAGGTTTTCTTAG 57.446 36.000 0.00 0.00 37.07 2.18
2302 2811 6.542370 TCTGAAACTCACAAGGTTTTCTTAGG 59.458 38.462 0.00 0.00 37.07 2.69
2303 2812 6.419791 TGAAACTCACAAGGTTTTCTTAGGA 58.580 36.000 0.00 0.00 37.07 2.94
2304 2813 6.887545 TGAAACTCACAAGGTTTTCTTAGGAA 59.112 34.615 0.00 0.00 37.07 3.36
2305 2814 7.394923 TGAAACTCACAAGGTTTTCTTAGGAAA 59.605 33.333 0.00 0.00 39.38 3.13
2306 2815 7.712204 AACTCACAAGGTTTTCTTAGGAAAA 57.288 32.000 8.56 8.56 45.62 2.29
2320 2829 2.912690 GGAAAATCCTACTCCCTCCG 57.087 55.000 0.00 0.00 32.53 4.63
2321 2830 2.395619 GGAAAATCCTACTCCCTCCGA 58.604 52.381 0.00 0.00 32.53 4.55
2322 2831 2.973406 GGAAAATCCTACTCCCTCCGAT 59.027 50.000 0.00 0.00 32.53 4.18
2323 2832 3.007074 GGAAAATCCTACTCCCTCCGATC 59.993 52.174 0.00 0.00 32.53 3.69
2324 2833 2.312424 AATCCTACTCCCTCCGATCC 57.688 55.000 0.00 0.00 0.00 3.36
2325 2834 1.158904 ATCCTACTCCCTCCGATCCA 58.841 55.000 0.00 0.00 0.00 3.41
2326 2835 1.158904 TCCTACTCCCTCCGATCCAT 58.841 55.000 0.00 0.00 0.00 3.41
2327 2836 2.355309 TCCTACTCCCTCCGATCCATA 58.645 52.381 0.00 0.00 0.00 2.74
2328 2837 2.927007 TCCTACTCCCTCCGATCCATAT 59.073 50.000 0.00 0.00 0.00 1.78
2329 2838 3.336997 TCCTACTCCCTCCGATCCATATT 59.663 47.826 0.00 0.00 0.00 1.28
2330 2839 4.542931 TCCTACTCCCTCCGATCCATATTA 59.457 45.833 0.00 0.00 0.00 0.98
2331 2840 5.015924 TCCTACTCCCTCCGATCCATATTAA 59.984 44.000 0.00 0.00 0.00 1.40
2332 2841 5.900123 CCTACTCCCTCCGATCCATATTAAT 59.100 44.000 0.00 0.00 0.00 1.40
2333 2842 7.067421 CCTACTCCCTCCGATCCATATTAATA 58.933 42.308 0.00 0.00 0.00 0.98
2334 2843 7.730784 CCTACTCCCTCCGATCCATATTAATAT 59.269 40.741 1.91 1.91 0.00 1.28
2335 2844 9.809395 CTACTCCCTCCGATCCATATTAATATA 57.191 37.037 7.65 0.00 0.00 0.86
2337 2846 9.094578 ACTCCCTCCGATCCATATTAATATATG 57.905 37.037 7.65 0.00 42.13 1.78
2338 2847 9.094578 CTCCCTCCGATCCATATTAATATATGT 57.905 37.037 7.65 0.00 41.29 2.29
2359 2868 5.337554 TGTACTACAAGATTCCGATTGACG 58.662 41.667 0.00 0.00 42.18 4.35
2360 2869 4.451629 ACTACAAGATTCCGATTGACGT 57.548 40.909 0.00 0.00 40.78 4.34
2361 2870 4.817517 ACTACAAGATTCCGATTGACGTT 58.182 39.130 0.00 0.00 40.78 3.99
2362 2871 5.957798 ACTACAAGATTCCGATTGACGTTA 58.042 37.500 0.00 0.00 40.78 3.18
2363 2872 6.570692 ACTACAAGATTCCGATTGACGTTAT 58.429 36.000 0.00 0.00 40.78 1.89
2364 2873 7.709947 ACTACAAGATTCCGATTGACGTTATA 58.290 34.615 0.00 0.00 40.78 0.98
2365 2874 8.192774 ACTACAAGATTCCGATTGACGTTATAA 58.807 33.333 0.00 0.00 40.78 0.98
2366 2875 7.230466 ACAAGATTCCGATTGACGTTATAAC 57.770 36.000 5.47 5.47 40.78 1.89
2367 2876 7.039882 ACAAGATTCCGATTGACGTTATAACT 58.960 34.615 13.56 1.10 40.78 2.24
2368 2877 8.192774 ACAAGATTCCGATTGACGTTATAACTA 58.807 33.333 13.56 0.00 40.78 2.24
2369 2878 9.027129 CAAGATTCCGATTGACGTTATAACTAA 57.973 33.333 13.56 6.65 40.78 2.24
2370 2879 8.571461 AGATTCCGATTGACGTTATAACTAAC 57.429 34.615 13.56 5.55 40.78 2.34
2371 2880 8.192774 AGATTCCGATTGACGTTATAACTAACA 58.807 33.333 13.56 7.82 37.65 2.41
2372 2881 8.706492 ATTCCGATTGACGTTATAACTAACAA 57.294 30.769 13.56 14.82 37.65 2.83
2373 2882 7.745022 TCCGATTGACGTTATAACTAACAAG 57.255 36.000 13.56 0.00 37.65 3.16
2374 2883 7.315142 TCCGATTGACGTTATAACTAACAAGT 58.685 34.615 13.56 2.96 37.65 3.16
2375 2884 8.458052 TCCGATTGACGTTATAACTAACAAGTA 58.542 33.333 13.56 0.00 37.65 2.24
2376 2885 9.241317 CCGATTGACGTTATAACTAACAAGTAT 57.759 33.333 13.56 3.35 37.65 2.12
2380 2889 9.502145 TTGACGTTATAACTAACAAGTATACCG 57.498 33.333 13.56 0.00 37.65 4.02
2381 2890 8.673711 TGACGTTATAACTAACAAGTATACCGT 58.326 33.333 13.56 1.34 37.65 4.83
2382 2891 9.159470 GACGTTATAACTAACAAGTATACCGTC 57.841 37.037 13.56 6.84 37.65 4.79
2383 2892 8.893727 ACGTTATAACTAACAAGTATACCGTCT 58.106 33.333 13.56 0.00 37.65 4.18
2384 2893 9.722056 CGTTATAACTAACAAGTATACCGTCTT 57.278 33.333 13.56 0.00 37.65 3.01
2388 2897 9.745880 ATAACTAACAAGTATACCGTCTTGATG 57.254 33.333 11.07 4.36 42.22 3.07
2389 2898 6.570692 ACTAACAAGTATACCGTCTTGATGG 58.429 40.000 11.07 7.29 42.22 3.51
2472 2981 4.949238 TGCCTACAATTGCTGTGATATTGT 59.051 37.500 5.05 0.00 43.02 2.71
2563 3072 5.707242 AAGGCCTCTTAAGCACTTTAAAC 57.293 39.130 5.23 0.00 31.12 2.01
2706 3291 3.845781 ATCCGTACATTGGAGCAGAAT 57.154 42.857 0.00 0.00 39.30 2.40
2708 3293 1.860950 CCGTACATTGGAGCAGAATCG 59.139 52.381 0.00 0.00 0.00 3.34
2908 3493 9.452287 TTTGGTATGGTTTATAAGGTACAGAAC 57.548 33.333 0.00 0.00 0.00 3.01
2914 3499 8.192743 TGGTTTATAAGGTACAGAACTACACA 57.807 34.615 0.00 0.00 0.00 3.72
2933 3518 9.031360 ACTACACAATGTATAGCTTATGTTTCG 57.969 33.333 0.00 0.00 31.66 3.46
2962 3547 6.239036 GGAGAAAAAGTGGCTTTGTCAGTTAT 60.239 38.462 12.60 0.00 39.44 1.89
2963 3548 6.507023 AGAAAAAGTGGCTTTGTCAGTTATG 58.493 36.000 12.60 0.00 39.44 1.90
3150 3735 2.426738 TGTTGGTGTTTGCTTGGAAGAG 59.573 45.455 0.00 0.00 0.00 2.85
3351 3959 1.199615 AGAGCTAGACTGGGGAAAGC 58.800 55.000 0.00 0.00 0.00 3.51
3518 4126 3.119316 CGAAGATATTCGGAGGGGATCAG 60.119 52.174 14.55 0.00 40.48 2.90
3612 4221 5.297527 ACCAAGTTTTTAGTCGGGTTGTAAG 59.702 40.000 0.00 0.00 0.00 2.34
3643 4253 1.146041 TCACAGCGGATACATGGCC 59.854 57.895 0.00 0.00 0.00 5.36
3772 4382 1.620819 ACTGAGCAAGACGTGGATCTT 59.379 47.619 0.00 0.00 39.60 2.40
3773 4383 2.037772 ACTGAGCAAGACGTGGATCTTT 59.962 45.455 0.00 0.00 36.78 2.52
3803 4413 2.743928 GCACCTGAAGCCTGTCCG 60.744 66.667 0.00 0.00 0.00 4.79
3823 4433 0.950555 TAAACTCTGCACGCAGCCAG 60.951 55.000 14.25 9.83 44.83 4.85
3930 4540 0.257039 ATCCATCCCTGAGCAACCAC 59.743 55.000 0.00 0.00 0.00 4.16
3992 4602 2.162921 CTGTGCGTGCAGAGGAAACG 62.163 60.000 10.89 0.00 38.70 3.60
4176 4786 2.971660 TGTCTTCGAACCAAGTGTCA 57.028 45.000 0.00 0.00 0.00 3.58
4207 4817 0.976641 TTCGCCAAGATGAGTCCTGT 59.023 50.000 0.00 0.00 0.00 4.00
4347 4965 6.092122 CGGTGTCTATTACTGAATCTTTGCAA 59.908 38.462 0.00 0.00 0.00 4.08
4409 5027 2.270986 GCAACTGGCAAGAGTGGGG 61.271 63.158 0.00 0.00 43.97 4.96
4414 5032 0.178992 CTGGCAAGAGTGGGGAACAA 60.179 55.000 0.00 0.00 0.00 2.83
4431 5049 5.222631 GGAACAAAAGTCATGGTAAAGCTG 58.777 41.667 0.00 0.00 0.00 4.24
4438 5056 6.932356 AAGTCATGGTAAAGCTGATGTATG 57.068 37.500 0.00 0.00 0.00 2.39
4498 5127 7.855904 GCTCAACTAAATTATTACAACGGGATG 59.144 37.037 0.00 0.00 0.00 3.51
4509 5138 7.962964 ATTACAACGGGATGTACATATTCTG 57.037 36.000 8.71 9.12 35.60 3.02
4531 5160 9.653287 TTCTGGTACTTTAGTCTGTGATTTATG 57.347 33.333 0.00 0.00 0.00 1.90
4535 5164 7.333423 GGTACTTTAGTCTGTGATTTATGTGCA 59.667 37.037 0.00 0.00 0.00 4.57
4590 5219 9.507280 CTTTATCAAATCTTGCACGTGATTTAT 57.493 29.630 22.23 11.82 39.85 1.40
4670 5300 6.422776 AGTCAATAAAATGCGGACAGTTAG 57.577 37.500 0.00 0.00 31.74 2.34
4679 5309 1.193874 GCGGACAGTTAGGACGTTTTG 59.806 52.381 0.00 0.00 0.00 2.44
4732 5367 6.978659 GGAAAATTTCAAAACGAAGAGAAGGT 59.021 34.615 8.09 0.00 34.32 3.50
4737 5372 1.430992 AAACGAAGAGAAGGTGGGGA 58.569 50.000 0.00 0.00 0.00 4.81
4746 5381 1.278127 AGAAGGTGGGGAACATACGTG 59.722 52.381 0.00 0.00 0.00 4.49
4791 5426 1.501582 AGAGAGGGCAGGGAACATAC 58.498 55.000 0.00 0.00 0.00 2.39
4810 5445 0.499761 CGTAAAGTTGAACGACGCGT 59.500 50.000 13.85 13.85 43.97 6.01
4815 5450 1.434379 GTTGAACGACGCGTGTTCG 60.434 57.895 30.62 25.04 46.77 3.95
4816 5451 2.578679 TTGAACGACGCGTGTTCGG 61.579 57.895 30.62 15.53 46.77 4.30
4867 5502 8.732413 AAATAATATAGAACAATGCATGTGCG 57.268 30.769 0.00 0.00 43.05 5.34
4868 5503 5.756195 AATATAGAACAATGCATGTGCGT 57.244 34.783 0.00 0.00 43.05 5.24
4875 5510 4.686722 TGCATGTGCGTTGCAGCG 62.687 61.111 19.37 19.37 44.73 5.18
4877 5512 4.764336 CATGTGCGTTGCAGCGGG 62.764 66.667 24.49 0.00 40.08 6.13
4880 5515 2.817834 GTGCGTTGCAGCGGGATA 60.818 61.111 24.49 0.00 40.08 2.59
4881 5516 2.180204 GTGCGTTGCAGCGGGATAT 61.180 57.895 24.49 0.00 40.08 1.63
4882 5517 0.878523 GTGCGTTGCAGCGGGATATA 60.879 55.000 24.49 0.00 40.08 0.86
4883 5518 0.179070 TGCGTTGCAGCGGGATATAA 60.179 50.000 24.49 0.00 40.67 0.98
4884 5519 0.941542 GCGTTGCAGCGGGATATAAA 59.058 50.000 24.49 0.00 0.00 1.40
4885 5520 1.535462 GCGTTGCAGCGGGATATAAAT 59.465 47.619 24.49 0.00 0.00 1.40
4886 5521 2.739913 GCGTTGCAGCGGGATATAAATA 59.260 45.455 24.49 0.00 0.00 1.40
4887 5522 3.374058 GCGTTGCAGCGGGATATAAATAT 59.626 43.478 24.49 0.00 0.00 1.28
4888 5523 4.142687 GCGTTGCAGCGGGATATAAATATT 60.143 41.667 24.49 0.00 0.00 1.28
4889 5524 5.560148 CGTTGCAGCGGGATATAAATATTC 58.440 41.667 15.84 0.00 0.00 1.75
4890 5525 5.351465 CGTTGCAGCGGGATATAAATATTCT 59.649 40.000 15.84 0.00 0.00 2.40
4891 5526 6.533723 CGTTGCAGCGGGATATAAATATTCTA 59.466 38.462 15.84 0.00 0.00 2.10
4892 5527 7.254117 CGTTGCAGCGGGATATAAATATTCTAG 60.254 40.741 15.84 0.00 0.00 2.43
4893 5528 7.182817 TGCAGCGGGATATAAATATTCTAGT 57.817 36.000 0.00 0.00 0.00 2.57
4894 5529 8.301252 TGCAGCGGGATATAAATATTCTAGTA 57.699 34.615 0.00 0.00 0.00 1.82
4895 5530 8.195436 TGCAGCGGGATATAAATATTCTAGTAC 58.805 37.037 0.00 0.00 0.00 2.73
4896 5531 8.195436 GCAGCGGGATATAAATATTCTAGTACA 58.805 37.037 0.00 0.00 0.00 2.90
4917 5552 9.772973 AGTACATTAGTTTGTGATTTACTGTCA 57.227 29.630 0.00 0.00 0.00 3.58
4927 5562 8.741101 TTGTGATTTACTGTCAATAACAATGC 57.259 30.769 11.77 0.00 37.45 3.56
4928 5563 7.020602 TGTGATTTACTGTCAATAACAATGCG 58.979 34.615 2.99 0.00 37.45 4.73
4929 5564 7.095017 TGTGATTTACTGTCAATAACAATGCGA 60.095 33.333 2.99 0.00 37.45 5.10
4930 5565 7.910162 GTGATTTACTGTCAATAACAATGCGAT 59.090 33.333 0.00 0.00 37.45 4.58
4931 5566 8.458052 TGATTTACTGTCAATAACAATGCGATT 58.542 29.630 0.00 0.00 37.45 3.34
4932 5567 8.619146 ATTTACTGTCAATAACAATGCGATTG 57.381 30.769 7.16 7.16 45.59 2.67
4951 5586 9.631452 TGCGATTGTGTAAATAAATTTTCATCA 57.369 25.926 0.00 0.00 31.40 3.07
4963 5598 9.643693 AATAAATTTTCATCAAATTCTGCTCGT 57.356 25.926 0.00 0.00 43.20 4.18
4964 5599 6.939551 AATTTTCATCAAATTCTGCTCGTG 57.060 33.333 0.00 0.00 40.52 4.35
4965 5600 5.687770 TTTTCATCAAATTCTGCTCGTGA 57.312 34.783 0.00 0.00 0.00 4.35
4966 5601 5.687770 TTTCATCAAATTCTGCTCGTGAA 57.312 34.783 0.00 0.00 0.00 3.18
4967 5602 5.885230 TTCATCAAATTCTGCTCGTGAAT 57.115 34.783 0.00 0.00 35.88 2.57
4968 5603 5.885230 TCATCAAATTCTGCTCGTGAATT 57.115 34.783 0.00 0.00 43.44 2.17
4969 5604 6.983474 TCATCAAATTCTGCTCGTGAATTA 57.017 33.333 0.00 0.00 41.54 1.40
4970 5605 6.775088 TCATCAAATTCTGCTCGTGAATTAC 58.225 36.000 0.00 0.00 41.54 1.89
4971 5606 5.545658 TCAAATTCTGCTCGTGAATTACC 57.454 39.130 0.00 0.00 41.54 2.85
4972 5607 5.245531 TCAAATTCTGCTCGTGAATTACCT 58.754 37.500 0.00 0.00 41.54 3.08
4973 5608 5.705441 TCAAATTCTGCTCGTGAATTACCTT 59.295 36.000 0.00 0.00 41.54 3.50
4974 5609 6.876789 TCAAATTCTGCTCGTGAATTACCTTA 59.123 34.615 0.00 0.00 41.54 2.69
4975 5610 7.552687 TCAAATTCTGCTCGTGAATTACCTTAT 59.447 33.333 0.00 0.00 41.54 1.73
4976 5611 8.826710 CAAATTCTGCTCGTGAATTACCTTATA 58.173 33.333 0.00 0.00 41.54 0.98
4977 5612 9.561069 AAATTCTGCTCGTGAATTACCTTATAT 57.439 29.630 0.00 0.00 41.54 0.86
4978 5613 9.561069 AATTCTGCTCGTGAATTACCTTATATT 57.439 29.630 0.00 0.00 40.88 1.28
4979 5614 8.958119 TTCTGCTCGTGAATTACCTTATATTT 57.042 30.769 0.00 0.00 0.00 1.40
4980 5615 8.958119 TCTGCTCGTGAATTACCTTATATTTT 57.042 30.769 0.00 0.00 0.00 1.82
4981 5616 8.826710 TCTGCTCGTGAATTACCTTATATTTTG 58.173 33.333 0.00 0.00 0.00 2.44
4982 5617 8.725405 TGCTCGTGAATTACCTTATATTTTGA 57.275 30.769 0.00 0.00 0.00 2.69
4983 5618 9.337396 TGCTCGTGAATTACCTTATATTTTGAT 57.663 29.630 0.00 0.00 0.00 2.57
5070 5705 9.519191 TGATTATCATATACAATGGAAGGTTGG 57.481 33.333 0.00 0.00 0.00 3.77
5071 5706 9.739276 GATTATCATATACAATGGAAGGTTGGA 57.261 33.333 0.00 0.00 0.00 3.53
5072 5707 8.918202 TTATCATATACAATGGAAGGTTGGAC 57.082 34.615 0.00 0.00 0.00 4.02
5073 5708 5.364778 TCATATACAATGGAAGGTTGGACG 58.635 41.667 0.00 0.00 0.00 4.79
5074 5709 3.992943 ATACAATGGAAGGTTGGACGA 57.007 42.857 0.00 0.00 0.00 4.20
5075 5710 2.649531 ACAATGGAAGGTTGGACGAA 57.350 45.000 0.00 0.00 0.00 3.85
5076 5711 3.154827 ACAATGGAAGGTTGGACGAAT 57.845 42.857 0.00 0.00 0.00 3.34
5077 5712 2.819608 ACAATGGAAGGTTGGACGAATG 59.180 45.455 0.00 0.00 0.00 2.67
5078 5713 2.128771 ATGGAAGGTTGGACGAATGG 57.871 50.000 0.00 0.00 0.00 3.16
5079 5714 0.037590 TGGAAGGTTGGACGAATGGG 59.962 55.000 0.00 0.00 0.00 4.00
5080 5715 0.037734 GGAAGGTTGGACGAATGGGT 59.962 55.000 0.00 0.00 0.00 4.51
5081 5716 1.165270 GAAGGTTGGACGAATGGGTG 58.835 55.000 0.00 0.00 0.00 4.61
5082 5717 0.251165 AAGGTTGGACGAATGGGTGG 60.251 55.000 0.00 0.00 0.00 4.61
5083 5718 1.074248 GGTTGGACGAATGGGTGGT 59.926 57.895 0.00 0.00 0.00 4.16
5084 5719 1.241315 GGTTGGACGAATGGGTGGTG 61.241 60.000 0.00 0.00 0.00 4.17
5085 5720 1.074072 TTGGACGAATGGGTGGTGG 59.926 57.895 0.00 0.00 0.00 4.61
5086 5721 1.419720 TTGGACGAATGGGTGGTGGA 61.420 55.000 0.00 0.00 0.00 4.02
5087 5722 1.377229 GGACGAATGGGTGGTGGAA 59.623 57.895 0.00 0.00 0.00 3.53
5088 5723 0.250989 GGACGAATGGGTGGTGGAAA 60.251 55.000 0.00 0.00 0.00 3.13
5089 5724 1.611519 GACGAATGGGTGGTGGAAAA 58.388 50.000 0.00 0.00 0.00 2.29
5090 5725 1.957877 GACGAATGGGTGGTGGAAAAA 59.042 47.619 0.00 0.00 0.00 1.94
5111 5746 7.940178 AAAAATGGTGAAACGGAAATCTTAC 57.060 32.000 0.00 0.00 38.12 2.34
5112 5747 4.939509 ATGGTGAAACGGAAATCTTACG 57.060 40.909 0.00 0.00 38.12 3.18
5113 5748 3.731089 TGGTGAAACGGAAATCTTACGT 58.269 40.909 0.00 0.00 43.43 3.57
5150 5785 8.937884 AGTATAAGTAGTAGAGATACATGTGCG 58.062 37.037 9.11 0.00 0.00 5.34
5151 5786 7.747155 ATAAGTAGTAGAGATACATGTGCGT 57.253 36.000 9.11 0.00 0.00 5.24
5152 5787 6.452494 AAGTAGTAGAGATACATGTGCGTT 57.548 37.500 9.11 0.00 0.00 4.84
5153 5788 5.822278 AGTAGTAGAGATACATGTGCGTTG 58.178 41.667 9.11 0.00 0.00 4.10
5154 5789 3.448686 AGTAGAGATACATGTGCGTTGC 58.551 45.455 9.11 0.00 0.00 4.17
5155 5790 2.385013 AGAGATACATGTGCGTTGCA 57.615 45.000 9.11 0.00 35.60 4.08
5156 5791 2.274437 AGAGATACATGTGCGTTGCAG 58.726 47.619 9.11 0.00 40.08 4.41
5157 5792 2.002586 GAGATACATGTGCGTTGCAGT 58.997 47.619 9.11 0.00 40.08 4.40
5158 5793 1.733912 AGATACATGTGCGTTGCAGTG 59.266 47.619 9.11 0.00 40.08 3.66
5159 5794 0.804364 ATACATGTGCGTTGCAGTGG 59.196 50.000 9.11 0.00 40.08 4.00
5160 5795 1.233950 TACATGTGCGTTGCAGTGGG 61.234 55.000 9.11 0.00 40.08 4.61
5161 5796 2.112928 ATGTGCGTTGCAGTGGGA 59.887 55.556 0.00 0.00 40.08 4.37
5162 5797 1.303561 ATGTGCGTTGCAGTGGGAT 60.304 52.632 0.00 0.00 40.08 3.85
5163 5798 0.035534 ATGTGCGTTGCAGTGGGATA 60.036 50.000 0.00 0.00 40.08 2.59
5164 5799 0.035534 TGTGCGTTGCAGTGGGATAT 60.036 50.000 0.00 0.00 40.08 1.63
5165 5800 1.208293 TGTGCGTTGCAGTGGGATATA 59.792 47.619 0.00 0.00 40.08 0.86
5166 5801 2.285083 GTGCGTTGCAGTGGGATATAA 58.715 47.619 0.00 0.00 40.08 0.98
5167 5802 2.680841 GTGCGTTGCAGTGGGATATAAA 59.319 45.455 0.00 0.00 40.08 1.40
5168 5803 3.315191 GTGCGTTGCAGTGGGATATAAAT 59.685 43.478 0.00 0.00 40.08 1.40
5169 5804 4.513692 GTGCGTTGCAGTGGGATATAAATA 59.486 41.667 0.00 0.00 40.08 1.40
5170 5805 5.181245 GTGCGTTGCAGTGGGATATAAATAT 59.819 40.000 0.00 0.00 40.08 1.28
5171 5806 5.767665 TGCGTTGCAGTGGGATATAAATATT 59.232 36.000 0.00 0.00 33.32 1.28
5172 5807 6.264292 TGCGTTGCAGTGGGATATAAATATTT 59.736 34.615 5.89 5.89 33.32 1.40
5173 5808 7.145323 GCGTTGCAGTGGGATATAAATATTTT 58.855 34.615 5.91 0.00 0.00 1.82
5174 5809 8.293867 GCGTTGCAGTGGGATATAAATATTTTA 58.706 33.333 5.91 0.00 0.00 1.52
5175 5810 9.825972 CGTTGCAGTGGGATATAAATATTTTAG 57.174 33.333 5.91 0.00 0.00 1.85
5178 5813 8.792633 TGCAGTGGGATATAAATATTTTAGTGC 58.207 33.333 5.91 9.20 32.35 4.40
5179 5814 7.962918 GCAGTGGGATATAAATATTTTAGTGCG 59.037 37.037 5.91 0.00 0.00 5.34
5180 5815 8.999431 CAGTGGGATATAAATATTTTAGTGCGT 58.001 33.333 5.91 0.00 0.00 5.24
5181 5816 9.569122 AGTGGGATATAAATATTTTAGTGCGTT 57.431 29.630 5.91 0.00 0.00 4.84
5195 5830 8.770850 TTTTAGTGCGTTAGTTTGTGATTTAC 57.229 30.769 0.00 0.00 0.00 2.01
5196 5831 5.352643 AGTGCGTTAGTTTGTGATTTACC 57.647 39.130 0.00 0.00 0.00 2.85
5197 5832 5.061179 AGTGCGTTAGTTTGTGATTTACCT 58.939 37.500 0.00 0.00 0.00 3.08
5198 5833 5.049680 AGTGCGTTAGTTTGTGATTTACCTG 60.050 40.000 0.00 0.00 0.00 4.00
5199 5834 4.817464 TGCGTTAGTTTGTGATTTACCTGT 59.183 37.500 0.00 0.00 0.00 4.00
5200 5835 5.049954 TGCGTTAGTTTGTGATTTACCTGTC 60.050 40.000 0.00 0.00 0.00 3.51
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
302 312 1.968493 AGTCTTGCTCTCCGTTACCAA 59.032 47.619 0.00 0.00 0.00 3.67
492 539 3.884091 TCTACTCATCCTACTCCTTTCGC 59.116 47.826 0.00 0.00 0.00 4.70
526 573 1.266175 CGCGACCTAACCGTATCAGAT 59.734 52.381 0.00 0.00 0.00 2.90
533 590 4.729856 GCCACGCGACCTAACCGT 62.730 66.667 15.93 0.00 35.29 4.83
548 605 2.283472 GACCAATTCCACCATGCGCC 62.283 60.000 4.18 0.00 0.00 6.53
551 608 3.055963 TCAATTGACCAATTCCACCATGC 60.056 43.478 3.38 0.00 38.84 4.06
560 617 2.893424 AGCCACCTCAATTGACCAATT 58.107 42.857 3.38 2.38 41.33 2.32
637 694 2.490115 GACACTGACCAGTAGTCCAGAG 59.510 54.545 15.45 0.00 45.68 3.35
638 695 2.158519 TGACACTGACCAGTAGTCCAGA 60.159 50.000 19.77 7.85 45.68 3.86
669 757 7.581213 TGAGAGCATTTTTCCAAGTTTTCTA 57.419 32.000 0.00 0.00 0.00 2.10
686 776 7.648112 CGCTACTATACAGTTTATTTGAGAGCA 59.352 37.037 0.00 0.00 36.14 4.26
688 778 7.115095 GGCGCTACTATACAGTTTATTTGAGAG 59.885 40.741 7.64 0.00 36.14 3.20
689 779 6.921857 GGCGCTACTATACAGTTTATTTGAGA 59.078 38.462 7.64 0.00 36.14 3.27
690 780 6.700081 TGGCGCTACTATACAGTTTATTTGAG 59.300 38.462 7.64 0.00 36.14 3.02
711 806 1.656818 AATTGCGAACCATCCTGGCG 61.657 55.000 0.00 0.00 42.67 5.69
714 809 2.006888 ACGTAATTGCGAACCATCCTG 58.993 47.619 22.96 0.00 35.59 3.86
755 855 9.734620 TGTTTCTTCAAGTTTTATCTGTTGATG 57.265 29.630 0.00 0.00 34.32 3.07
781 881 4.622220 GCAGCCATTTCACCTTGATTTGAT 60.622 41.667 0.00 0.00 0.00 2.57
807 907 2.540383 TCTGACCTGACAGCTAATGGT 58.460 47.619 0.00 0.00 37.75 3.55
816 916 1.591703 GCGACCATCTGACCTGACA 59.408 57.895 0.00 0.00 0.00 3.58
817 917 1.153549 GGCGACCATCTGACCTGAC 60.154 63.158 0.00 0.00 0.00 3.51
818 918 1.609210 TGGCGACCATCTGACCTGA 60.609 57.895 0.00 0.00 0.00 3.86
819 919 1.448540 GTGGCGACCATCTGACCTG 60.449 63.158 1.90 0.00 35.28 4.00
820 920 1.892819 CTGTGGCGACCATCTGACCT 61.893 60.000 0.00 0.00 35.28 3.85
821 921 1.448540 CTGTGGCGACCATCTGACC 60.449 63.158 0.00 0.00 35.28 4.02
901 1001 1.957695 GTTGTTCGGGTGTCGGTCC 60.958 63.158 0.00 0.00 39.77 4.46
1050 1158 1.062505 AGGATGGAGAGGAGGAAGGTC 60.063 57.143 0.00 0.00 0.00 3.85
1066 1180 4.148825 GAGTGGCGCGTGGAGGAT 62.149 66.667 8.43 0.00 0.00 3.24
1141 1255 1.217882 GTGTTCTGCGTGTAGTTGCT 58.782 50.000 0.00 0.00 0.00 3.91
1160 1274 2.886730 GATGTTGGCCCGGTAGGTGG 62.887 65.000 0.00 0.00 38.26 4.61
1224 1338 3.771160 CCGGTGGCGTAGAAGGCT 61.771 66.667 0.00 0.00 37.59 4.58
1227 1341 1.139095 GTCTCCGGTGGCGTAGAAG 59.861 63.158 0.00 0.00 0.00 2.85
1228 1342 2.693762 CGTCTCCGGTGGCGTAGAA 61.694 63.158 21.62 0.00 0.00 2.10
1637 1766 2.048503 CGTCCGCCGTCTTTTCCT 60.049 61.111 0.00 0.00 0.00 3.36
1700 1829 0.471780 TCCTGTCCTGCCTCTGAACA 60.472 55.000 0.00 0.00 0.00 3.18
1848 1977 2.038557 TCTTACAGCCAACTCACCTTCC 59.961 50.000 0.00 0.00 0.00 3.46
1930 2093 1.342555 CACGCCATTGCACATCAAAG 58.657 50.000 0.00 0.00 38.34 2.77
1944 2107 3.849645 GCATGTTCTTACATATGCACGCC 60.850 47.826 1.58 0.00 43.07 5.68
2003 2176 4.665833 TTTTCACAGAAAGTCGAGAGGA 57.334 40.909 0.00 0.00 0.00 3.71
2064 2264 4.695455 CGGTGGTGTTAACTGATTCAGAAT 59.305 41.667 20.33 10.64 35.18 2.40
2125 2325 2.490115 CTCAAGTACTCTGACGAAGCCT 59.510 50.000 0.00 0.00 0.00 4.58
2204 2614 3.510753 TGTATTTGCATCACACTGGCAAT 59.489 39.130 0.00 0.00 45.81 3.56
2231 2641 7.447374 TTGTCTGTATTTAAGGGTCATGTTG 57.553 36.000 0.00 0.00 0.00 3.33
2239 2649 6.757897 TGCAAGATTGTCTGTATTTAAGGG 57.242 37.500 0.00 0.00 0.00 3.95
2244 2654 6.996509 ACCATTTGCAAGATTGTCTGTATTT 58.003 32.000 0.00 0.00 0.00 1.40
2271 2681 2.547211 CCTTGTGAGTTTCAGAGCACAG 59.453 50.000 0.00 0.00 41.63 3.66
2301 2810 2.395619 TCGGAGGGAGTAGGATTTTCC 58.604 52.381 0.00 0.00 36.58 3.13
2302 2811 3.007074 GGATCGGAGGGAGTAGGATTTTC 59.993 52.174 0.00 0.00 0.00 2.29
2303 2812 2.973406 GGATCGGAGGGAGTAGGATTTT 59.027 50.000 0.00 0.00 0.00 1.82
2304 2813 2.090719 TGGATCGGAGGGAGTAGGATTT 60.091 50.000 0.00 0.00 0.00 2.17
2305 2814 1.503784 TGGATCGGAGGGAGTAGGATT 59.496 52.381 0.00 0.00 0.00 3.01
2306 2815 1.158904 TGGATCGGAGGGAGTAGGAT 58.841 55.000 0.00 0.00 0.00 3.24
2307 2816 1.158904 ATGGATCGGAGGGAGTAGGA 58.841 55.000 0.00 0.00 0.00 2.94
2308 2817 2.901338 TATGGATCGGAGGGAGTAGG 57.099 55.000 0.00 0.00 0.00 3.18
2309 2818 8.713708 ATATTAATATGGATCGGAGGGAGTAG 57.286 38.462 7.18 0.00 0.00 2.57
2311 2820 9.094578 CATATATTAATATGGATCGGAGGGAGT 57.905 37.037 16.72 0.00 40.85 3.85
2312 2821 9.094578 ACATATATTAATATGGATCGGAGGGAG 57.905 37.037 16.72 0.00 46.32 4.30
2333 2842 7.808381 CGTCAATCGGAATCTTGTAGTACATAT 59.192 37.037 3.28 0.00 35.71 1.78
2334 2843 7.136772 CGTCAATCGGAATCTTGTAGTACATA 58.863 38.462 3.28 0.00 35.71 2.29
2335 2844 5.977725 CGTCAATCGGAATCTTGTAGTACAT 59.022 40.000 3.28 0.00 35.71 2.29
2336 2845 5.106038 ACGTCAATCGGAATCTTGTAGTACA 60.106 40.000 0.00 0.00 44.69 2.90
2337 2846 5.338365 ACGTCAATCGGAATCTTGTAGTAC 58.662 41.667 0.00 0.00 44.69 2.73
2338 2847 5.571784 ACGTCAATCGGAATCTTGTAGTA 57.428 39.130 0.00 0.00 44.69 1.82
2339 2848 4.451629 ACGTCAATCGGAATCTTGTAGT 57.548 40.909 0.00 0.00 44.69 2.73
2340 2849 8.477709 GTTATAACGTCAATCGGAATCTTGTAG 58.522 37.037 0.00 0.00 44.69 2.74
2341 2850 8.192774 AGTTATAACGTCAATCGGAATCTTGTA 58.807 33.333 9.91 0.00 44.69 2.41
2342 2851 7.039882 AGTTATAACGTCAATCGGAATCTTGT 58.960 34.615 9.91 0.00 44.69 3.16
2343 2852 7.464830 AGTTATAACGTCAATCGGAATCTTG 57.535 36.000 9.91 0.00 44.69 3.02
2344 2853 9.028185 GTTAGTTATAACGTCAATCGGAATCTT 57.972 33.333 9.91 0.00 44.69 2.40
2345 2854 8.192774 TGTTAGTTATAACGTCAATCGGAATCT 58.807 33.333 9.91 0.00 43.61 2.40
2346 2855 8.343974 TGTTAGTTATAACGTCAATCGGAATC 57.656 34.615 9.91 0.00 43.61 2.52
2347 2856 8.706492 TTGTTAGTTATAACGTCAATCGGAAT 57.294 30.769 9.91 0.00 43.61 3.01
2348 2857 7.814107 ACTTGTTAGTTATAACGTCAATCGGAA 59.186 33.333 9.91 0.00 43.61 4.30
2349 2858 7.315142 ACTTGTTAGTTATAACGTCAATCGGA 58.685 34.615 9.91 0.00 43.61 4.55
2350 2859 7.515957 ACTTGTTAGTTATAACGTCAATCGG 57.484 36.000 9.91 7.80 43.61 4.18
2354 2863 9.502145 CGGTATACTTGTTAGTTATAACGTCAA 57.498 33.333 9.91 13.83 43.61 3.18
2355 2864 8.673711 ACGGTATACTTGTTAGTTATAACGTCA 58.326 33.333 9.91 7.87 43.61 4.35
2356 2865 9.159470 GACGGTATACTTGTTAGTTATAACGTC 57.841 37.037 17.71 17.71 43.50 4.34
2357 2866 8.893727 AGACGGTATACTTGTTAGTTATAACGT 58.106 33.333 9.95 9.95 43.61 3.99
2358 2867 9.722056 AAGACGGTATACTTGTTAGTTATAACG 57.278 33.333 9.91 4.23 43.61 3.18
2362 2871 9.745880 CATCAAGACGGTATACTTGTTAGTTAT 57.254 33.333 2.25 0.00 42.50 1.89
2363 2872 8.192774 CCATCAAGACGGTATACTTGTTAGTTA 58.807 37.037 2.25 0.00 42.50 2.24
2364 2873 7.039882 CCATCAAGACGGTATACTTGTTAGTT 58.960 38.462 2.25 0.00 42.50 2.24
2365 2874 6.154021 ACCATCAAGACGGTATACTTGTTAGT 59.846 38.462 2.25 0.00 42.50 2.24
2366 2875 6.570692 ACCATCAAGACGGTATACTTGTTAG 58.429 40.000 2.25 0.00 42.50 2.34
2367 2876 6.534475 ACCATCAAGACGGTATACTTGTTA 57.466 37.500 2.25 0.00 42.50 2.41
2368 2877 5.416271 ACCATCAAGACGGTATACTTGTT 57.584 39.130 2.25 0.00 42.50 2.83
2369 2878 6.726490 ATACCATCAAGACGGTATACTTGT 57.274 37.500 6.07 1.93 44.82 3.16
2377 2886 9.706691 CAAGTAAATATATACCATCAAGACGGT 57.293 33.333 0.00 0.00 39.41 4.83
2378 2887 8.656849 GCAAGTAAATATATACCATCAAGACGG 58.343 37.037 0.00 0.00 0.00 4.79
2379 2888 9.203421 TGCAAGTAAATATATACCATCAAGACG 57.797 33.333 0.00 0.00 0.00 4.18
2472 2981 0.973632 AAGTACACCACAGCGATGGA 59.026 50.000 15.40 0.00 43.02 3.41
2563 3072 7.445121 TCACTTGACTGGCTATTATTCCATAG 58.555 38.462 0.00 0.00 0.00 2.23
2622 3131 7.986085 AAACAAGTTCTACTATGCACTGATT 57.014 32.000 0.00 0.00 0.00 2.57
2674 3259 6.059484 CCAATGTACGGATAACCTTTGGTAT 58.941 40.000 0.00 0.00 33.12 2.73
2706 3291 8.589629 GTTTTGAGCTCTTTACGAAATATACGA 58.410 33.333 16.19 0.00 34.70 3.43
2708 3293 8.880750 AGGTTTTGAGCTCTTTACGAAATATAC 58.119 33.333 16.19 1.64 0.00 1.47
2908 3493 8.487970 CCGAAACATAAGCTATACATTGTGTAG 58.512 37.037 14.33 14.33 36.14 2.74
2914 3499 5.313712 CCCCCGAAACATAAGCTATACATT 58.686 41.667 0.00 0.00 0.00 2.71
2941 3526 6.220726 ACATAACTGACAAAGCCACTTTTT 57.779 33.333 0.00 0.00 30.60 1.94
2945 3530 5.852282 AAAACATAACTGACAAAGCCACT 57.148 34.783 0.00 0.00 0.00 4.00
3351 3959 6.365839 CGATTCCATTGATTATCTTGAACCG 58.634 40.000 0.00 0.00 0.00 4.44
3518 4126 2.095668 ACGACGAGTCACATCTTCTGAC 60.096 50.000 0.00 0.00 38.70 3.51
3612 4221 1.261619 CGCTGTGACAGAAACAGAACC 59.738 52.381 18.18 0.00 46.55 3.62
3772 4382 3.819368 TCAGGTGCTCACAAGATTCAAA 58.181 40.909 2.21 0.00 0.00 2.69
3773 4383 3.490439 TCAGGTGCTCACAAGATTCAA 57.510 42.857 2.21 0.00 0.00 2.69
3803 4413 1.227999 TGGCTGCGTGCAGAGTTTAC 61.228 55.000 25.09 6.22 46.30 2.01
3823 4433 5.886960 ATTCAGACATTGTTACCAGAAGC 57.113 39.130 0.00 0.00 0.00 3.86
4207 4817 7.934665 TGGTTCAGTTAACTGCTTCAAACTATA 59.065 33.333 27.49 14.35 43.46 1.31
4278 4888 4.159135 CCTCCCAAGATCATTTCCAACAAG 59.841 45.833 0.00 0.00 0.00 3.16
4282 4892 3.053395 CCTCCTCCCAAGATCATTTCCAA 60.053 47.826 0.00 0.00 0.00 3.53
4347 4965 5.683876 AGCAGTTCTACTTACATCCACAT 57.316 39.130 0.00 0.00 0.00 3.21
4409 5027 6.072112 TCAGCTTTACCATGACTTTTGTTC 57.928 37.500 0.00 0.00 0.00 3.18
4414 5032 6.319658 CCATACATCAGCTTTACCATGACTTT 59.680 38.462 0.00 0.00 0.00 2.66
4431 5049 9.803315 TCTTTATAATCTATCACGCCATACATC 57.197 33.333 0.00 0.00 0.00 3.06
4438 5056 6.371548 TGGCATTCTTTATAATCTATCACGCC 59.628 38.462 0.00 0.00 0.00 5.68
4473 5091 8.889717 ACATCCCGTTGTAATAATTTAGTTGAG 58.110 33.333 0.00 0.00 0.00 3.02
4498 5127 9.517609 CACAGACTAAAGTACCAGAATATGTAC 57.482 37.037 0.00 0.00 38.06 2.90
4509 5138 7.333423 TGCACATAAATCACAGACTAAAGTACC 59.667 37.037 0.00 0.00 0.00 3.34
4563 5192 4.722194 TCACGTGCAAGATTTGATAAAGC 58.278 39.130 11.67 0.00 0.00 3.51
4564 5193 7.801547 AAATCACGTGCAAGATTTGATAAAG 57.198 32.000 11.67 0.00 41.48 1.85
4732 5367 2.835156 TCATCTTCACGTATGTTCCCCA 59.165 45.455 0.00 0.00 0.00 4.96
4761 5396 3.575687 CCTGCCCTCTCTTTGTTTTGAAT 59.424 43.478 0.00 0.00 0.00 2.57
4763 5398 2.586425 CCTGCCCTCTCTTTGTTTTGA 58.414 47.619 0.00 0.00 0.00 2.69
4764 5399 1.615392 CCCTGCCCTCTCTTTGTTTTG 59.385 52.381 0.00 0.00 0.00 2.44
4768 5403 0.402121 GTTCCCTGCCCTCTCTTTGT 59.598 55.000 0.00 0.00 0.00 2.83
4769 5404 0.401738 TGTTCCCTGCCCTCTCTTTG 59.598 55.000 0.00 0.00 0.00 2.77
4770 5405 1.376649 ATGTTCCCTGCCCTCTCTTT 58.623 50.000 0.00 0.00 0.00 2.52
4777 5412 2.285977 CTTTACGTATGTTCCCTGCCC 58.714 52.381 0.00 0.00 0.00 5.36
4791 5426 0.499761 ACGCGTCGTTCAACTTTACG 59.500 50.000 5.58 3.37 36.35 3.18
4844 5479 7.439157 ACGCACATGCATTGTTCTATATTAT 57.561 32.000 0.00 0.00 42.21 1.28
4852 5487 0.435769 GCAACGCACATGCATTGTTC 59.564 50.000 13.53 0.00 44.94 3.18
4853 5488 2.519826 GCAACGCACATGCATTGTT 58.480 47.368 13.53 2.63 44.94 2.83
4854 5489 4.248402 GCAACGCACATGCATTGT 57.752 50.000 13.53 0.00 44.94 2.71
4860 5495 4.764336 CCCGCTGCAACGCACATG 62.764 66.667 3.43 0.00 33.79 3.21
4861 5496 2.867793 TATCCCGCTGCAACGCACAT 62.868 55.000 3.43 0.00 33.79 3.21
4862 5497 2.867793 ATATCCCGCTGCAACGCACA 62.868 55.000 3.43 0.00 33.79 4.57
4863 5498 0.878523 TATATCCCGCTGCAACGCAC 60.879 55.000 3.43 0.00 33.79 5.34
4864 5499 0.179070 TTATATCCCGCTGCAACGCA 60.179 50.000 3.43 0.00 36.92 5.24
4865 5500 0.941542 TTTATATCCCGCTGCAACGC 59.058 50.000 3.43 0.00 0.00 4.84
4866 5501 5.351465 AGAATATTTATATCCCGCTGCAACG 59.649 40.000 1.65 1.65 0.00 4.10
4867 5502 6.743575 AGAATATTTATATCCCGCTGCAAC 57.256 37.500 0.00 0.00 0.00 4.17
4868 5503 7.620880 ACTAGAATATTTATATCCCGCTGCAA 58.379 34.615 0.00 0.00 0.00 4.08
4869 5504 7.182817 ACTAGAATATTTATATCCCGCTGCA 57.817 36.000 0.00 0.00 0.00 4.41
4870 5505 8.195436 TGTACTAGAATATTTATATCCCGCTGC 58.805 37.037 0.00 0.00 0.00 5.25
4891 5526 9.772973 TGACAGTAAATCACAAACTAATGTACT 57.227 29.630 0.00 0.00 30.84 2.73
4901 5536 9.190858 GCATTGTTATTGACAGTAAATCACAAA 57.809 29.630 12.58 0.59 39.94 2.83
4902 5537 7.536964 CGCATTGTTATTGACAGTAAATCACAA 59.463 33.333 11.38 11.38 39.94 3.33
4903 5538 7.020602 CGCATTGTTATTGACAGTAAATCACA 58.979 34.615 0.00 0.00 39.94 3.58
4904 5539 7.240674 TCGCATTGTTATTGACAGTAAATCAC 58.759 34.615 0.00 0.00 39.94 3.06
4905 5540 7.371126 TCGCATTGTTATTGACAGTAAATCA 57.629 32.000 0.00 0.00 39.94 2.57
4906 5541 8.736742 CAATCGCATTGTTATTGACAGTAAATC 58.263 33.333 7.09 0.00 39.94 2.17
4907 5542 8.619146 CAATCGCATTGTTATTGACAGTAAAT 57.381 30.769 7.09 0.00 39.94 1.40
4925 5560 9.631452 TGATGAAAATTTATTTACACAATCGCA 57.369 25.926 0.00 0.00 0.00 5.10
4937 5572 9.643693 ACGAGCAGAATTTGATGAAAATTTATT 57.356 25.926 0.00 0.00 46.29 1.40
4938 5573 9.079833 CACGAGCAGAATTTGATGAAAATTTAT 57.920 29.630 0.00 0.00 46.29 1.40
4939 5574 8.296000 TCACGAGCAGAATTTGATGAAAATTTA 58.704 29.630 0.00 0.00 46.29 1.40
4940 5575 7.147312 TCACGAGCAGAATTTGATGAAAATTT 58.853 30.769 0.00 0.00 46.29 1.82
4942 5577 6.258230 TCACGAGCAGAATTTGATGAAAAT 57.742 33.333 0.00 0.00 40.32 1.82
4943 5578 5.687770 TCACGAGCAGAATTTGATGAAAA 57.312 34.783 0.00 0.00 0.00 2.29
4944 5579 5.687770 TTCACGAGCAGAATTTGATGAAA 57.312 34.783 0.00 0.00 0.00 2.69
4945 5580 5.885230 ATTCACGAGCAGAATTTGATGAA 57.115 34.783 0.00 0.00 31.99 2.57
4946 5581 5.885230 AATTCACGAGCAGAATTTGATGA 57.115 34.783 0.00 0.00 41.54 2.92
4947 5582 5.967674 GGTAATTCACGAGCAGAATTTGATG 59.032 40.000 6.48 0.00 41.54 3.07
4948 5583 5.882557 AGGTAATTCACGAGCAGAATTTGAT 59.117 36.000 6.48 0.00 41.54 2.57
4949 5584 5.245531 AGGTAATTCACGAGCAGAATTTGA 58.754 37.500 6.48 0.00 41.54 2.69
4950 5585 5.551760 AGGTAATTCACGAGCAGAATTTG 57.448 39.130 6.48 0.00 41.54 2.32
4951 5586 7.865706 ATAAGGTAATTCACGAGCAGAATTT 57.134 32.000 6.48 0.00 41.54 1.82
4952 5587 9.561069 AATATAAGGTAATTCACGAGCAGAATT 57.439 29.630 6.43 6.43 45.05 2.17
4953 5588 9.561069 AAATATAAGGTAATTCACGAGCAGAAT 57.439 29.630 0.00 0.00 37.30 2.40
4954 5589 8.958119 AAATATAAGGTAATTCACGAGCAGAA 57.042 30.769 0.00 0.00 0.00 3.02
4955 5590 8.826710 CAAAATATAAGGTAATTCACGAGCAGA 58.173 33.333 0.00 0.00 0.00 4.26
4956 5591 8.826710 TCAAAATATAAGGTAATTCACGAGCAG 58.173 33.333 0.00 0.00 0.00 4.24
4957 5592 8.725405 TCAAAATATAAGGTAATTCACGAGCA 57.275 30.769 0.00 0.00 0.00 4.26
5044 5679 9.519191 CCAACCTTCCATTGTATATGATAATCA 57.481 33.333 0.00 0.00 0.00 2.57
5045 5680 9.739276 TCCAACCTTCCATTGTATATGATAATC 57.261 33.333 0.00 0.00 0.00 1.75
5046 5681 9.520515 GTCCAACCTTCCATTGTATATGATAAT 57.479 33.333 0.00 0.00 0.00 1.28
5047 5682 7.659799 CGTCCAACCTTCCATTGTATATGATAA 59.340 37.037 0.00 0.00 0.00 1.75
5048 5683 7.015779 TCGTCCAACCTTCCATTGTATATGATA 59.984 37.037 0.00 0.00 0.00 2.15
5049 5684 5.997746 CGTCCAACCTTCCATTGTATATGAT 59.002 40.000 0.00 0.00 0.00 2.45
5050 5685 5.129650 TCGTCCAACCTTCCATTGTATATGA 59.870 40.000 0.00 0.00 0.00 2.15
5051 5686 5.364778 TCGTCCAACCTTCCATTGTATATG 58.635 41.667 0.00 0.00 0.00 1.78
5052 5687 5.623956 TCGTCCAACCTTCCATTGTATAT 57.376 39.130 0.00 0.00 0.00 0.86
5053 5688 5.423704 TTCGTCCAACCTTCCATTGTATA 57.576 39.130 0.00 0.00 0.00 1.47
5054 5689 3.992943 TCGTCCAACCTTCCATTGTAT 57.007 42.857 0.00 0.00 0.00 2.29
5055 5690 3.773418 TTCGTCCAACCTTCCATTGTA 57.227 42.857 0.00 0.00 0.00 2.41
5056 5691 2.649531 TTCGTCCAACCTTCCATTGT 57.350 45.000 0.00 0.00 0.00 2.71
5057 5692 2.164219 CCATTCGTCCAACCTTCCATTG 59.836 50.000 0.00 0.00 0.00 2.82
5058 5693 2.446435 CCATTCGTCCAACCTTCCATT 58.554 47.619 0.00 0.00 0.00 3.16
5059 5694 1.340991 CCCATTCGTCCAACCTTCCAT 60.341 52.381 0.00 0.00 0.00 3.41
5060 5695 0.037590 CCCATTCGTCCAACCTTCCA 59.962 55.000 0.00 0.00 0.00 3.53
5061 5696 0.037734 ACCCATTCGTCCAACCTTCC 59.962 55.000 0.00 0.00 0.00 3.46
5062 5697 1.165270 CACCCATTCGTCCAACCTTC 58.835 55.000 0.00 0.00 0.00 3.46
5063 5698 0.251165 CCACCCATTCGTCCAACCTT 60.251 55.000 0.00 0.00 0.00 3.50
5064 5699 1.378762 CCACCCATTCGTCCAACCT 59.621 57.895 0.00 0.00 0.00 3.50
5065 5700 1.074248 ACCACCCATTCGTCCAACC 59.926 57.895 0.00 0.00 0.00 3.77
5066 5701 1.241315 CCACCACCCATTCGTCCAAC 61.241 60.000 0.00 0.00 0.00 3.77
5067 5702 1.074072 CCACCACCCATTCGTCCAA 59.926 57.895 0.00 0.00 0.00 3.53
5068 5703 1.419720 TTCCACCACCCATTCGTCCA 61.420 55.000 0.00 0.00 0.00 4.02
5069 5704 0.250989 TTTCCACCACCCATTCGTCC 60.251 55.000 0.00 0.00 0.00 4.79
5070 5705 1.611519 TTTTCCACCACCCATTCGTC 58.388 50.000 0.00 0.00 0.00 4.20
5071 5706 2.074729 TTTTTCCACCACCCATTCGT 57.925 45.000 0.00 0.00 0.00 3.85
5087 5722 6.639279 CGTAAGATTTCCGTTTCACCATTTTT 59.361 34.615 0.00 0.00 43.02 1.94
5088 5723 6.146898 CGTAAGATTTCCGTTTCACCATTTT 58.853 36.000 0.00 0.00 43.02 1.82
5089 5724 5.239963 ACGTAAGATTTCCGTTTCACCATTT 59.760 36.000 0.00 0.00 43.62 2.32
5090 5725 4.758165 ACGTAAGATTTCCGTTTCACCATT 59.242 37.500 0.00 0.00 43.62 3.16
5091 5726 4.320870 ACGTAAGATTTCCGTTTCACCAT 58.679 39.130 0.00 0.00 43.62 3.55
5092 5727 3.731089 ACGTAAGATTTCCGTTTCACCA 58.269 40.909 0.00 0.00 43.62 4.17
5093 5728 4.737353 AACGTAAGATTTCCGTTTCACC 57.263 40.909 0.00 0.00 41.58 4.02
5124 5759 8.937884 CGCACATGTATCTCTACTACTTATACT 58.062 37.037 0.00 0.00 0.00 2.12
5125 5760 8.719648 ACGCACATGTATCTCTACTACTTATAC 58.280 37.037 0.00 0.00 0.00 1.47
5126 5761 8.843885 ACGCACATGTATCTCTACTACTTATA 57.156 34.615 0.00 0.00 0.00 0.98
5127 5762 7.747155 ACGCACATGTATCTCTACTACTTAT 57.253 36.000 0.00 0.00 0.00 1.73
5128 5763 7.415229 CAACGCACATGTATCTCTACTACTTA 58.585 38.462 0.00 0.00 0.00 2.24
5129 5764 6.266323 CAACGCACATGTATCTCTACTACTT 58.734 40.000 0.00 0.00 0.00 2.24
5130 5765 5.733655 GCAACGCACATGTATCTCTACTACT 60.734 44.000 0.00 0.00 0.00 2.57
5131 5766 4.441415 GCAACGCACATGTATCTCTACTAC 59.559 45.833 0.00 0.00 0.00 2.73
5132 5767 4.097286 TGCAACGCACATGTATCTCTACTA 59.903 41.667 0.00 0.00 31.71 1.82
5133 5768 3.119137 TGCAACGCACATGTATCTCTACT 60.119 43.478 0.00 0.00 31.71 2.57
5134 5769 3.186909 TGCAACGCACATGTATCTCTAC 58.813 45.455 0.00 0.00 31.71 2.59
5135 5770 3.119137 ACTGCAACGCACATGTATCTCTA 60.119 43.478 0.00 0.00 33.79 2.43
5136 5771 2.274437 CTGCAACGCACATGTATCTCT 58.726 47.619 0.00 0.00 33.79 3.10
5137 5772 2.002586 ACTGCAACGCACATGTATCTC 58.997 47.619 0.00 0.00 33.79 2.75
5138 5773 1.733912 CACTGCAACGCACATGTATCT 59.266 47.619 0.00 0.00 33.79 1.98
5139 5774 1.202065 CCACTGCAACGCACATGTATC 60.202 52.381 0.00 0.00 33.79 2.24
5140 5775 0.804364 CCACTGCAACGCACATGTAT 59.196 50.000 0.00 0.00 33.79 2.29
5141 5776 1.233950 CCCACTGCAACGCACATGTA 61.234 55.000 0.00 0.00 33.79 2.29
5142 5777 2.554636 CCCACTGCAACGCACATGT 61.555 57.895 0.00 0.00 33.79 3.21
5143 5778 1.588824 ATCCCACTGCAACGCACATG 61.589 55.000 0.00 0.00 33.79 3.21
5144 5779 0.035534 TATCCCACTGCAACGCACAT 60.036 50.000 0.00 0.00 33.79 3.21
5145 5780 0.035534 ATATCCCACTGCAACGCACA 60.036 50.000 0.00 0.00 33.79 4.57
5146 5781 1.948104 TATATCCCACTGCAACGCAC 58.052 50.000 0.00 0.00 33.79 5.34
5147 5782 2.700722 TTATATCCCACTGCAACGCA 57.299 45.000 0.00 0.00 36.92 5.24
5148 5783 5.880054 ATATTTATATCCCACTGCAACGC 57.120 39.130 0.00 0.00 0.00 4.84
5149 5784 9.825972 CTAAAATATTTATATCCCACTGCAACG 57.174 33.333 0.01 0.00 0.00 4.10
5152 5787 8.792633 GCACTAAAATATTTATATCCCACTGCA 58.207 33.333 0.01 0.00 0.00 4.41
5153 5788 7.962918 CGCACTAAAATATTTATATCCCACTGC 59.037 37.037 0.01 0.00 0.00 4.40
5154 5789 8.999431 ACGCACTAAAATATTTATATCCCACTG 58.001 33.333 0.01 0.00 0.00 3.66
5155 5790 9.569122 AACGCACTAAAATATTTATATCCCACT 57.431 29.630 0.01 0.00 0.00 4.00
5169 5804 9.389570 GTAAATCACAAACTAACGCACTAAAAT 57.610 29.630 0.00 0.00 0.00 1.82
5170 5805 7.856894 GGTAAATCACAAACTAACGCACTAAAA 59.143 33.333 0.00 0.00 0.00 1.52
5171 5806 7.227116 AGGTAAATCACAAACTAACGCACTAAA 59.773 33.333 0.00 0.00 0.00 1.85
5172 5807 6.707161 AGGTAAATCACAAACTAACGCACTAA 59.293 34.615 0.00 0.00 0.00 2.24
5173 5808 6.146510 CAGGTAAATCACAAACTAACGCACTA 59.853 38.462 0.00 0.00 0.00 2.74
5174 5809 5.049680 CAGGTAAATCACAAACTAACGCACT 60.050 40.000 0.00 0.00 0.00 4.40
5175 5810 5.144359 CAGGTAAATCACAAACTAACGCAC 58.856 41.667 0.00 0.00 0.00 5.34
5176 5811 4.817464 ACAGGTAAATCACAAACTAACGCA 59.183 37.500 0.00 0.00 0.00 5.24
5177 5812 5.352643 ACAGGTAAATCACAAACTAACGC 57.647 39.130 0.00 0.00 0.00 4.84


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.