Multiple sequence alignment - TraesCS2A01G215200

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS2A01G215200 chr2A 100.000 4610 0 0 1 4610 202055263 202059872 0.000000e+00 8514.0
1 TraesCS2A01G215200 chr6A 98.066 4549 83 5 62 4610 559144194 559148737 0.000000e+00 7908.0
2 TraesCS2A01G215200 chr6A 96.767 3897 97 17 67 3954 608726670 608730546 0.000000e+00 6471.0
3 TraesCS2A01G215200 chr6A 96.769 3095 67 19 860 3954 37846811 37849872 0.000000e+00 5131.0
4 TraesCS2A01G215200 chr6A 97.085 1818 36 12 2137 3954 585129947 585131747 0.000000e+00 3048.0
5 TraesCS2A01G215200 chr6A 97.795 635 14 0 3976 4610 590126466 590125832 0.000000e+00 1096.0
6 TraesCS2A01G215200 chr4A 97.606 4553 102 4 62 4610 362823461 362828010 0.000000e+00 7797.0
7 TraesCS2A01G215200 chr4A 89.457 4515 353 66 183 4610 664515269 664510791 0.000000e+00 5587.0
8 TraesCS2A01G215200 chr4A 93.400 3697 203 27 52 3720 152578797 152582480 0.000000e+00 5437.0
9 TraesCS2A01G215200 chr4A 90.806 3600 270 35 70 3617 531072763 531069173 0.000000e+00 4758.0
10 TraesCS2A01G215200 chr4A 91.592 2783 194 18 961 3716 72015199 72017968 0.000000e+00 3807.0
11 TraesCS2A01G215200 chr1A 98.369 3985 53 3 634 4610 498221009 498217029 0.000000e+00 6988.0
12 TraesCS2A01G215200 chr1A 97.892 3463 46 9 488 3941 23398974 23402418 0.000000e+00 5965.0
13 TraesCS2A01G215200 chr1A 97.274 1137 28 2 60 1196 42473149 42472016 0.000000e+00 1925.0
14 TraesCS2A01G215200 chr1A 95.029 1187 37 16 2783 3954 547873000 547874179 0.000000e+00 1845.0
15 TraesCS2A01G215200 chr1A 95.881 704 26 3 3909 4610 23402350 23403052 0.000000e+00 1136.0
16 TraesCS2A01G215200 chr1A 97.953 635 13 0 3976 4610 474560507 474559873 0.000000e+00 1101.0
17 TraesCS2A01G215200 chr3A 97.033 3708 83 16 910 4610 717937227 717933540 0.000000e+00 6213.0
18 TraesCS2A01G215200 chr3A 98.394 3300 49 4 642 3941 595105653 595108948 0.000000e+00 5797.0
19 TraesCS2A01G215200 chr3A 96.444 703 23 2 3909 4610 595108881 595109582 0.000000e+00 1158.0
20 TraesCS2A01G215200 chr2D 96.047 3339 110 10 67 3393 536995768 536999096 0.000000e+00 5415.0
21 TraesCS2A01G215200 chr5A 96.834 3095 65 19 860 3954 522122879 522119818 0.000000e+00 5142.0
22 TraesCS2A01G215200 chr5A 96.000 700 26 2 3912 4610 99542132 99541434 0.000000e+00 1136.0
23 TraesCS2A01G215200 chr5D 95.579 2692 90 15 67 2742 77882216 77884894 0.000000e+00 4285.0
24 TraesCS2A01G215200 chr7A 97.052 2103 46 11 1852 3954 35613419 35611333 0.000000e+00 3526.0
25 TraesCS2A01G215200 chr7A 96.875 64 2 0 1 64 554382278 554382215 1.750000e-19 108.0
26 TraesCS2A01G215200 chr6B 96.721 61 2 0 1 61 281488123 281488183 8.160000e-18 102.0
27 TraesCS2A01G215200 chr3D 93.103 58 4 0 1 58 27084685 27084742 8.220000e-13 86.1


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS2A01G215200 chr2A 202055263 202059872 4609 False 8514.0 8514 100.0000 1 4610 1 chr2A.!!$F1 4609
1 TraesCS2A01G215200 chr6A 559144194 559148737 4543 False 7908.0 7908 98.0660 62 4610 1 chr6A.!!$F2 4548
2 TraesCS2A01G215200 chr6A 608726670 608730546 3876 False 6471.0 6471 96.7670 67 3954 1 chr6A.!!$F4 3887
3 TraesCS2A01G215200 chr6A 37846811 37849872 3061 False 5131.0 5131 96.7690 860 3954 1 chr6A.!!$F1 3094
4 TraesCS2A01G215200 chr6A 585129947 585131747 1800 False 3048.0 3048 97.0850 2137 3954 1 chr6A.!!$F3 1817
5 TraesCS2A01G215200 chr6A 590125832 590126466 634 True 1096.0 1096 97.7950 3976 4610 1 chr6A.!!$R1 634
6 TraesCS2A01G215200 chr4A 362823461 362828010 4549 False 7797.0 7797 97.6060 62 4610 1 chr4A.!!$F3 4548
7 TraesCS2A01G215200 chr4A 664510791 664515269 4478 True 5587.0 5587 89.4570 183 4610 1 chr4A.!!$R2 4427
8 TraesCS2A01G215200 chr4A 152578797 152582480 3683 False 5437.0 5437 93.4000 52 3720 1 chr4A.!!$F2 3668
9 TraesCS2A01G215200 chr4A 531069173 531072763 3590 True 4758.0 4758 90.8060 70 3617 1 chr4A.!!$R1 3547
10 TraesCS2A01G215200 chr4A 72015199 72017968 2769 False 3807.0 3807 91.5920 961 3716 1 chr4A.!!$F1 2755
11 TraesCS2A01G215200 chr1A 498217029 498221009 3980 True 6988.0 6988 98.3690 634 4610 1 chr1A.!!$R3 3976
12 TraesCS2A01G215200 chr1A 23398974 23403052 4078 False 3550.5 5965 96.8865 488 4610 2 chr1A.!!$F2 4122
13 TraesCS2A01G215200 chr1A 42472016 42473149 1133 True 1925.0 1925 97.2740 60 1196 1 chr1A.!!$R1 1136
14 TraesCS2A01G215200 chr1A 547873000 547874179 1179 False 1845.0 1845 95.0290 2783 3954 1 chr1A.!!$F1 1171
15 TraesCS2A01G215200 chr1A 474559873 474560507 634 True 1101.0 1101 97.9530 3976 4610 1 chr1A.!!$R2 634
16 TraesCS2A01G215200 chr3A 717933540 717937227 3687 True 6213.0 6213 97.0330 910 4610 1 chr3A.!!$R1 3700
17 TraesCS2A01G215200 chr3A 595105653 595109582 3929 False 3477.5 5797 97.4190 642 4610 2 chr3A.!!$F1 3968
18 TraesCS2A01G215200 chr2D 536995768 536999096 3328 False 5415.0 5415 96.0470 67 3393 1 chr2D.!!$F1 3326
19 TraesCS2A01G215200 chr5A 522119818 522122879 3061 True 5142.0 5142 96.8340 860 3954 1 chr5A.!!$R2 3094
20 TraesCS2A01G215200 chr5A 99541434 99542132 698 True 1136.0 1136 96.0000 3912 4610 1 chr5A.!!$R1 698
21 TraesCS2A01G215200 chr5D 77882216 77884894 2678 False 4285.0 4285 95.5790 67 2742 1 chr5D.!!$F1 2675
22 TraesCS2A01G215200 chr7A 35611333 35613419 2086 True 3526.0 3526 97.0520 1852 3954 1 chr7A.!!$R1 2102

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
43 44 0.392336 GGCCCAGCACACAATTCAAA 59.608 50.0 0.00 0.0 0.00 2.69 F
195 196 1.179174 ACCACTGTGCAGCGTCTCTA 61.179 55.0 1.29 0.0 0.00 2.43 F
1271 1316 0.036388 GGATTCAGTTGGTCAGCCGA 60.036 55.0 0.00 0.0 37.67 5.54 F
2121 2172 0.390735 AGTTGGACACGATTACGCCC 60.391 55.0 0.00 0.0 43.96 6.13 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1271 1316 0.806102 CGTTCAGATTCGGCGTGGAT 60.806 55.000 6.85 0.00 0.00 3.41 R
2121 2172 0.456221 ATGACCTCGTTACCTGCTCG 59.544 55.000 0.00 0.00 0.00 5.03 R
3119 3176 0.035439 ATTTCGGGATCACGGCAACT 60.035 50.000 18.99 0.00 0.00 3.16 R
3962 4141 2.046892 AGTAAGGTGCAGCGCCTG 60.047 61.111 28.59 2.69 44.35 4.85 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
25 26 7.475137 TTTATGTTTGTTTATTCCTCCCAGG 57.525 36.000 0.00 0.00 36.46 4.45
26 27 3.161866 TGTTTGTTTATTCCTCCCAGGC 58.838 45.455 0.00 0.00 34.61 4.85
27 28 2.496070 GTTTGTTTATTCCTCCCAGGCC 59.504 50.000 0.00 0.00 34.61 5.19
28 29 0.629058 TGTTTATTCCTCCCAGGCCC 59.371 55.000 0.00 0.00 34.61 5.80
29 30 0.629058 GTTTATTCCTCCCAGGCCCA 59.371 55.000 0.00 0.00 34.61 5.36
30 31 0.926293 TTTATTCCTCCCAGGCCCAG 59.074 55.000 0.00 0.00 34.61 4.45
31 32 1.645402 TTATTCCTCCCAGGCCCAGC 61.645 60.000 0.00 0.00 34.61 4.85
32 33 2.856208 TATTCCTCCCAGGCCCAGCA 62.856 60.000 0.00 0.00 34.61 4.41
35 36 4.729918 CTCCCAGGCCCAGCACAC 62.730 72.222 0.00 0.00 0.00 3.82
37 38 4.601794 CCCAGGCCCAGCACACAA 62.602 66.667 0.00 0.00 0.00 3.33
38 39 2.283388 CCAGGCCCAGCACACAAT 60.283 61.111 0.00 0.00 0.00 2.71
39 40 1.909781 CCAGGCCCAGCACACAATT 60.910 57.895 0.00 0.00 0.00 2.32
40 41 1.588082 CAGGCCCAGCACACAATTC 59.412 57.895 0.00 0.00 0.00 2.17
41 42 1.153524 AGGCCCAGCACACAATTCA 59.846 52.632 0.00 0.00 0.00 2.57
42 43 0.469705 AGGCCCAGCACACAATTCAA 60.470 50.000 0.00 0.00 0.00 2.69
43 44 0.392336 GGCCCAGCACACAATTCAAA 59.608 50.000 0.00 0.00 0.00 2.69
44 45 1.501169 GCCCAGCACACAATTCAAAC 58.499 50.000 0.00 0.00 0.00 2.93
45 46 1.202510 GCCCAGCACACAATTCAAACA 60.203 47.619 0.00 0.00 0.00 2.83
46 47 2.746269 CCCAGCACACAATTCAAACAG 58.254 47.619 0.00 0.00 0.00 3.16
47 48 2.129607 CCAGCACACAATTCAAACAGC 58.870 47.619 0.00 0.00 0.00 4.40
48 49 2.223876 CCAGCACACAATTCAAACAGCT 60.224 45.455 0.00 0.00 0.00 4.24
49 50 3.004629 CCAGCACACAATTCAAACAGCTA 59.995 43.478 0.00 0.00 0.00 3.32
50 51 3.976942 CAGCACACAATTCAAACAGCTAC 59.023 43.478 0.00 0.00 0.00 3.58
51 52 3.004734 AGCACACAATTCAAACAGCTACC 59.995 43.478 0.00 0.00 0.00 3.18
52 53 3.004734 GCACACAATTCAAACAGCTACCT 59.995 43.478 0.00 0.00 0.00 3.08
53 54 4.787598 CACACAATTCAAACAGCTACCTC 58.212 43.478 0.00 0.00 0.00 3.85
54 55 4.516698 CACACAATTCAAACAGCTACCTCT 59.483 41.667 0.00 0.00 0.00 3.69
55 56 4.757149 ACACAATTCAAACAGCTACCTCTC 59.243 41.667 0.00 0.00 0.00 3.20
56 57 4.154918 CACAATTCAAACAGCTACCTCTCC 59.845 45.833 0.00 0.00 0.00 3.71
57 58 4.202461 ACAATTCAAACAGCTACCTCTCCA 60.202 41.667 0.00 0.00 0.00 3.86
58 59 3.685139 TTCAAACAGCTACCTCTCCAG 57.315 47.619 0.00 0.00 0.00 3.86
59 60 1.902508 TCAAACAGCTACCTCTCCAGG 59.097 52.381 0.00 0.00 46.87 4.45
64 65 3.905678 CTACCTCTCCAGGCGGCG 61.906 72.222 0.51 0.51 45.05 6.46
100 101 2.755103 GACCTCAGGGCGAAATCAAATT 59.245 45.455 0.00 0.00 35.63 1.82
190 191 2.896854 CACACCACTGTGCAGCGT 60.897 61.111 1.29 0.00 46.86 5.07
195 196 1.179174 ACCACTGTGCAGCGTCTCTA 61.179 55.000 1.29 0.00 0.00 2.43
505 514 5.300304 TCCCTCCTACTAGGTAAACTCCTA 58.700 45.833 1.83 0.00 38.86 2.94
883 906 5.488262 TTCATTGTGTGAGAAGGAGATGA 57.512 39.130 0.00 0.00 38.29 2.92
1271 1316 0.036388 GGATTCAGTTGGTCAGCCGA 60.036 55.000 0.00 0.00 37.67 5.54
1317 1362 0.674895 GGTGTCCGCTCTTGCTGATT 60.675 55.000 0.00 0.00 35.05 2.57
1536 1584 5.650283 AGGGAGAAGAGAAGAAGAAGAAGA 58.350 41.667 0.00 0.00 0.00 2.87
1966 2017 2.031163 GTCTGCCTGTTGGACGCT 59.969 61.111 0.00 0.00 34.57 5.07
2121 2172 0.390735 AGTTGGACACGATTACGCCC 60.391 55.000 0.00 0.00 43.96 6.13
2275 2326 1.003812 CCGGAGTTTACCATCAACCCA 59.996 52.381 0.00 0.00 0.00 4.51
2527 2582 1.418097 TTGGACAGGAGAAGGCAGCA 61.418 55.000 0.00 0.00 0.00 4.41
3119 3176 2.693591 AGGCGGTTATCGAATCTTCTCA 59.306 45.455 0.00 0.00 42.43 3.27
3318 3375 1.593006 CGTCGGTCTTCACCATATTGC 59.407 52.381 0.00 0.00 44.02 3.56
3530 3623 4.821589 GGCGGAGGAGGAAGTGCG 62.822 72.222 0.00 0.00 0.00 5.34
3728 3852 9.005777 GTGGTATTTGTGTTGTCCTAAAAGATA 57.994 33.333 0.00 0.00 0.00 1.98
3954 4133 3.933722 ACCTCACAGTGCAGCGCT 61.934 61.111 2.64 2.64 0.00 5.92
3962 4141 4.410743 GTGCAGCGCTCAAAGCCC 62.411 66.667 7.13 0.00 38.18 5.19
3998 4177 4.782019 ACTGCAAAAACAGAGTTGACAA 57.218 36.364 0.00 0.00 40.25 3.18
4235 4450 1.004745 ACCGAACCGAAGTCCCTACTA 59.995 52.381 0.00 0.00 33.75 1.82
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
2 3 5.420739 GCCTGGGAGGAATAAACAAACATAA 59.579 40.000 0.00 0.00 37.67 1.90
6 7 2.496070 GGCCTGGGAGGAATAAACAAAC 59.504 50.000 0.00 0.00 37.67 2.93
10 11 0.629058 TGGGCCTGGGAGGAATAAAC 59.371 55.000 4.53 0.00 37.67 2.01
11 12 0.926293 CTGGGCCTGGGAGGAATAAA 59.074 55.000 4.53 0.00 37.67 1.40
12 13 1.645402 GCTGGGCCTGGGAGGAATAA 61.645 60.000 12.70 0.00 37.67 1.40
13 14 2.078665 GCTGGGCCTGGGAGGAATA 61.079 63.158 12.70 0.00 37.67 1.75
14 15 3.424105 GCTGGGCCTGGGAGGAAT 61.424 66.667 12.70 0.00 37.67 3.01
18 19 4.729918 GTGTGCTGGGCCTGGGAG 62.730 72.222 12.70 0.00 0.00 4.30
20 21 3.892104 ATTGTGTGCTGGGCCTGGG 62.892 63.158 12.70 0.00 0.00 4.45
21 22 1.880819 GAATTGTGTGCTGGGCCTGG 61.881 60.000 12.70 2.60 0.00 4.45
22 23 1.180456 TGAATTGTGTGCTGGGCCTG 61.180 55.000 4.53 5.32 0.00 4.85
23 24 0.469705 TTGAATTGTGTGCTGGGCCT 60.470 50.000 4.53 0.00 0.00 5.19
24 25 0.392336 TTTGAATTGTGTGCTGGGCC 59.608 50.000 0.00 0.00 0.00 5.80
25 26 1.202510 TGTTTGAATTGTGTGCTGGGC 60.203 47.619 0.00 0.00 0.00 5.36
26 27 2.746269 CTGTTTGAATTGTGTGCTGGG 58.254 47.619 0.00 0.00 0.00 4.45
27 28 2.129607 GCTGTTTGAATTGTGTGCTGG 58.870 47.619 0.00 0.00 0.00 4.85
28 29 3.088194 AGCTGTTTGAATTGTGTGCTG 57.912 42.857 0.00 0.00 0.00 4.41
29 30 3.004734 GGTAGCTGTTTGAATTGTGTGCT 59.995 43.478 0.00 0.00 0.00 4.40
30 31 3.004734 AGGTAGCTGTTTGAATTGTGTGC 59.995 43.478 0.00 0.00 0.00 4.57
31 32 4.516698 AGAGGTAGCTGTTTGAATTGTGTG 59.483 41.667 0.00 0.00 0.00 3.82
32 33 4.718961 AGAGGTAGCTGTTTGAATTGTGT 58.281 39.130 0.00 0.00 0.00 3.72
33 34 4.154918 GGAGAGGTAGCTGTTTGAATTGTG 59.845 45.833 0.00 0.00 0.00 3.33
34 35 4.202461 TGGAGAGGTAGCTGTTTGAATTGT 60.202 41.667 0.00 0.00 0.00 2.71
35 36 4.326826 TGGAGAGGTAGCTGTTTGAATTG 58.673 43.478 0.00 0.00 0.00 2.32
36 37 4.566488 CCTGGAGAGGTAGCTGTTTGAATT 60.566 45.833 0.00 0.00 34.16 2.17
37 38 3.054802 CCTGGAGAGGTAGCTGTTTGAAT 60.055 47.826 0.00 0.00 34.16 2.57
38 39 2.303022 CCTGGAGAGGTAGCTGTTTGAA 59.697 50.000 0.00 0.00 34.16 2.69
39 40 1.902508 CCTGGAGAGGTAGCTGTTTGA 59.097 52.381 0.00 0.00 34.16 2.69
40 41 1.677217 GCCTGGAGAGGTAGCTGTTTG 60.677 57.143 0.00 0.00 42.15 2.93
41 42 0.615850 GCCTGGAGAGGTAGCTGTTT 59.384 55.000 0.00 0.00 42.15 2.83
42 43 1.608717 CGCCTGGAGAGGTAGCTGTT 61.609 60.000 0.00 0.00 42.15 3.16
43 44 2.055042 CGCCTGGAGAGGTAGCTGT 61.055 63.158 0.00 0.00 42.15 4.40
44 45 2.790791 CCGCCTGGAGAGGTAGCTG 61.791 68.421 0.00 0.00 42.15 4.24
45 46 2.443016 CCGCCTGGAGAGGTAGCT 60.443 66.667 0.00 0.00 42.15 3.32
46 47 4.228567 GCCGCCTGGAGAGGTAGC 62.229 72.222 0.00 0.00 42.15 3.58
47 48 3.905678 CGCCGCCTGGAGAGGTAG 61.906 72.222 0.00 0.00 42.15 3.18
48 49 3.949885 TTCGCCGCCTGGAGAGGTA 62.950 63.158 0.00 0.00 45.35 3.08
50 51 2.876368 ATTTTCGCCGCCTGGAGAGG 62.876 60.000 0.00 0.00 45.35 3.69
51 52 1.432270 GATTTTCGCCGCCTGGAGAG 61.432 60.000 0.00 0.00 45.35 3.20
52 53 1.449601 GATTTTCGCCGCCTGGAGA 60.450 57.895 0.00 0.00 42.88 3.71
53 54 1.097547 ATGATTTTCGCCGCCTGGAG 61.098 55.000 0.00 0.00 37.49 3.86
54 55 0.179234 TATGATTTTCGCCGCCTGGA 59.821 50.000 0.00 0.00 37.49 3.86
55 56 1.238439 ATATGATTTTCGCCGCCTGG 58.762 50.000 0.00 0.00 38.77 4.45
56 57 4.685169 AATATATGATTTTCGCCGCCTG 57.315 40.909 0.00 0.00 0.00 4.85
57 58 4.759693 TCAAATATATGATTTTCGCCGCCT 59.240 37.500 0.00 0.00 0.00 5.52
58 59 4.851558 GTCAAATATATGATTTTCGCCGCC 59.148 41.667 0.00 0.00 0.00 6.13
59 60 4.851558 GGTCAAATATATGATTTTCGCCGC 59.148 41.667 0.00 0.00 0.00 6.53
64 65 7.573843 CGCCCTGAGGTCAAATATATGATTTTC 60.574 40.741 0.00 0.00 34.57 2.29
100 101 7.433708 TTTTTCGAGAGCAGATCATTTTGTA 57.566 32.000 0.00 0.00 0.00 2.41
190 191 0.393402 TGCGACGCCTAAGGTAGAGA 60.393 55.000 18.69 0.00 0.00 3.10
195 196 2.995574 AGGTGCGACGCCTAAGGT 60.996 61.111 18.69 0.00 43.18 3.50
505 514 7.576861 TTACGGAGAAAAAGAAAGGAAACAT 57.423 32.000 0.00 0.00 0.00 2.71
1271 1316 0.806102 CGTTCAGATTCGGCGTGGAT 60.806 55.000 6.85 0.00 0.00 3.41
1536 1584 1.177401 GCTCCGGATGCTTTCCTTTT 58.823 50.000 3.57 0.00 42.99 2.27
1966 2017 3.508762 GATTAAACCTGACGCTCTTCGA 58.491 45.455 0.00 0.00 41.67 3.71
2121 2172 0.456221 ATGACCTCGTTACCTGCTCG 59.544 55.000 0.00 0.00 0.00 5.03
2275 2326 0.466189 CCCTATCCCGCAAGCACATT 60.466 55.000 0.00 0.00 0.00 2.71
2527 2582 4.323868 GCTTGTCCCAGTCCTTTATCTTCT 60.324 45.833 0.00 0.00 0.00 2.85
3119 3176 0.035439 ATTTCGGGATCACGGCAACT 60.035 50.000 18.99 0.00 0.00 3.16
3318 3375 2.905075 TCGCCCTATCACACAATCAAG 58.095 47.619 0.00 0.00 0.00 3.02
3530 3623 2.428085 GGACGAGCCTCCTCTTCCC 61.428 68.421 5.24 0.00 45.89 3.97
3762 3886 9.467258 CACAAATACTGAACAATTCAACTGAAT 57.533 29.630 0.00 0.00 45.91 2.57
3962 4141 2.046892 AGTAAGGTGCAGCGCCTG 60.047 61.111 28.59 2.69 44.35 4.85
3998 4177 3.218453 TGTTCCGGTGAAATGAATGTGT 58.782 40.909 0.00 0.00 30.79 3.72
4070 4254 5.640357 AGTTATGAACTCGTCGGCATAAAAA 59.360 36.000 0.00 0.00 37.02 1.94
4235 4450 1.134371 GGAAATGGCCTCGCTCTACTT 60.134 52.381 3.32 0.00 0.00 2.24


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.