Multiple sequence alignment - TraesCS2A01G214800

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS2A01G214800 chr2A 100.000 2757 0 0 1 2757 201799206 201796450 0.000000e+00 5092.0
1 TraesCS2A01G214800 chr2A 91.597 119 10 0 2639 2757 540778020 540777902 6.110000e-37 165.0
2 TraesCS2A01G214800 chr2A 91.379 116 10 0 2636 2751 21799986 21800101 2.840000e-35 159.0
3 TraesCS2A01G214800 chr2B 92.770 2379 99 28 16 2376 244173322 244170999 0.000000e+00 3373.0
4 TraesCS2A01G214800 chr2B 89.677 155 16 0 2484 2638 244068595 244068441 6.020000e-47 198.0
5 TraesCS2A01G214800 chr2B 89.209 139 15 0 2500 2638 244068729 244068591 1.010000e-39 174.0
6 TraesCS2A01G214800 chr2D 96.547 1419 36 9 405 1819 188281858 188280449 0.000000e+00 2337.0
7 TraesCS2A01G214800 chr2D 89.428 804 20 12 1844 2638 188280457 188279710 0.000000e+00 953.0
8 TraesCS2A01G214800 chr2D 96.916 227 6 1 89 314 188282250 188282024 2.000000e-101 379.0
9 TraesCS2A01G214800 chr6A 95.935 123 5 0 2635 2757 203527715 203527593 1.670000e-47 200.0
10 TraesCS2A01G214800 chr6A 91.935 124 9 1 2635 2757 493561539 493561416 3.650000e-39 172.0
11 TraesCS2A01G214800 chr6A 89.474 57 3 3 2583 2637 30878448 30878503 4.930000e-08 69.4
12 TraesCS2A01G214800 chr3A 95.935 123 5 0 2635 2757 36141527 36141405 1.670000e-47 200.0
13 TraesCS2A01G214800 chr5A 94.118 119 7 0 2639 2757 702044578 702044460 6.070000e-42 182.0
14 TraesCS2A01G214800 chr5A 91.597 119 10 0 2639 2757 653013961 653013843 6.110000e-37 165.0
15 TraesCS2A01G214800 chr5A 96.875 32 0 1 15 45 263547292 263547261 5.000000e-03 52.8
16 TraesCS2A01G214800 chr4A 90.984 122 11 0 2636 2757 467241093 467241214 6.110000e-37 165.0
17 TraesCS2A01G214800 chr4A 90.164 122 12 0 2636 2757 455220387 455220508 2.840000e-35 159.0
18 TraesCS2A01G214800 chr6D 83.099 142 13 9 2498 2637 372040495 372040363 4.820000e-23 119.0
19 TraesCS2A01G214800 chr7A 89.474 57 3 3 2583 2637 183683953 183683898 4.930000e-08 69.4
20 TraesCS2A01G214800 chr7D 90.196 51 3 2 2588 2637 576172228 576172179 6.370000e-07 65.8
21 TraesCS2A01G214800 chr3D 90.196 51 3 2 2588 2637 397149417 397149368 6.370000e-07 65.8
22 TraesCS2A01G214800 chr3D 90.196 51 3 2 2588 2637 397157288 397157239 6.370000e-07 65.8
23 TraesCS2A01G214800 chr3D 100.000 28 0 0 18 45 486136515 486136542 5.000000e-03 52.8


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS2A01G214800 chr2A 201796450 201799206 2756 True 5092 5092 100.000 1 2757 1 chr2A.!!$R1 2756
1 TraesCS2A01G214800 chr2B 244170999 244173322 2323 True 3373 3373 92.770 16 2376 1 chr2B.!!$R1 2360
2 TraesCS2A01G214800 chr2D 188279710 188282250 2540 True 1223 2337 94.297 89 2638 3 chr2D.!!$R1 2549

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
909 988 0.036105 TCGTCTAGTAGCGACACCCA 60.036 55.0 11.13 0.0 31.76 4.51 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1790 1875 0.034896 AACACGCGGTCTGAAGGATT 59.965 50.0 12.47 0.0 0.0 3.01 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
50 51 7.473027 AATTTGATCAAACTTTGCACTCTTG 57.527 32.000 22.71 0.00 32.51 3.02
55 56 3.627577 TCAAACTTTGCACTCTTGGACTC 59.372 43.478 0.00 0.00 0.00 3.36
84 87 7.708998 ACAATACGTAAAAGCCTTCTTTTCAA 58.291 30.769 0.00 0.00 46.45 2.69
123 126 1.591059 CTGAGCGCCATCTCCGAAG 60.591 63.158 2.29 0.00 32.22 3.79
215 219 3.243068 CCCTCAAGGACAACAAAACTTCG 60.243 47.826 0.00 0.00 38.24 3.79
274 278 4.357918 AGTAGAAACTGAGCACCATGTT 57.642 40.909 0.00 0.00 33.57 2.71
307 352 1.377725 CCACACACCAGATGGCTCC 60.378 63.158 0.00 0.00 39.32 4.70
320 365 4.465512 GCTCCATTGCACGCCACG 62.466 66.667 0.00 0.00 0.00 4.94
426 475 7.348080 ACCTTTTCTTTTTCTTTCCTGTAGG 57.652 36.000 0.00 0.00 0.00 3.18
427 476 7.123383 ACCTTTTCTTTTTCTTTCCTGTAGGA 58.877 34.615 0.00 0.00 43.73 2.94
428 477 7.068348 ACCTTTTCTTTTTCTTTCCTGTAGGAC 59.932 37.037 0.00 0.00 45.39 3.85
429 478 6.954487 TTTCTTTTTCTTTCCTGTAGGACC 57.046 37.500 0.00 0.00 45.39 4.46
611 690 4.222145 ACGGCTAAACTTTAGTGAGGATGA 59.778 41.667 9.77 0.00 0.00 2.92
845 924 6.178239 ACCAACGCAGAGATATTAAACAAC 57.822 37.500 0.00 0.00 0.00 3.32
854 933 9.677567 GCAGAGATATTAAACAACAAAGAACAA 57.322 29.630 0.00 0.00 0.00 2.83
909 988 0.036105 TCGTCTAGTAGCGACACCCA 60.036 55.000 11.13 0.00 31.76 4.51
964 1045 1.282817 TTTTCACCACGACGACAGTG 58.717 50.000 0.00 6.10 39.19 3.66
988 1069 0.252742 GGAGGGGAGGAGAACCAAGA 60.253 60.000 0.00 0.00 38.94 3.02
1056 1137 1.809619 CGTCGCCATGGATGTCGTT 60.810 57.895 18.40 0.00 0.00 3.85
1111 1193 2.151049 GAGCCAGGTAACCGTGTCGT 62.151 60.000 0.00 0.00 37.17 4.34
1437 1519 2.124570 GAGCCGCCACATCACCAT 60.125 61.111 0.00 0.00 0.00 3.55
1443 1525 1.477700 CCGCCACATCACCATCAAAAT 59.522 47.619 0.00 0.00 0.00 1.82
1444 1526 2.687425 CCGCCACATCACCATCAAAATA 59.313 45.455 0.00 0.00 0.00 1.40
1445 1527 3.489059 CCGCCACATCACCATCAAAATAC 60.489 47.826 0.00 0.00 0.00 1.89
1446 1528 3.378112 CGCCACATCACCATCAAAATACT 59.622 43.478 0.00 0.00 0.00 2.12
1447 1529 4.574421 CGCCACATCACCATCAAAATACTA 59.426 41.667 0.00 0.00 0.00 1.82
1500 1582 2.056577 GGTTCGATTCGAAGAACACGT 58.943 47.619 21.05 0.00 46.54 4.49
1693 1775 1.789751 CGTCTACTACGTGTCCGCA 59.210 57.895 0.00 0.00 46.72 5.69
1784 1869 2.512286 CGACCAGTCGCCATGCAT 60.512 61.111 7.33 0.00 46.50 3.96
1785 1870 1.227234 CGACCAGTCGCCATGCATA 60.227 57.895 7.33 0.00 46.50 3.14
1786 1871 0.809636 CGACCAGTCGCCATGCATAA 60.810 55.000 7.33 0.00 46.50 1.90
1787 1872 1.597742 GACCAGTCGCCATGCATAAT 58.402 50.000 0.00 0.00 0.00 1.28
1788 1873 1.532868 GACCAGTCGCCATGCATAATC 59.467 52.381 0.00 0.00 0.00 1.75
1789 1874 0.877071 CCAGTCGCCATGCATAATCC 59.123 55.000 0.00 0.00 0.00 3.01
1790 1875 1.596603 CAGTCGCCATGCATAATCCA 58.403 50.000 0.00 0.00 0.00 3.41
1791 1876 1.948834 CAGTCGCCATGCATAATCCAA 59.051 47.619 0.00 0.00 0.00 3.53
1792 1877 2.555325 CAGTCGCCATGCATAATCCAAT 59.445 45.455 0.00 0.00 0.00 3.16
1795 1880 2.165167 CGCCATGCATAATCCAATCCT 58.835 47.619 0.00 0.00 0.00 3.24
1818 1912 3.490759 CCGCGTGTTGCTGCCTAG 61.491 66.667 4.92 0.00 43.27 3.02
1824 1918 1.002134 TGTTGCTGCCTAGGCCTTC 60.002 57.895 30.81 18.93 41.09 3.46
1829 1923 1.961180 GCTGCCTAGGCCTTCTTCGA 61.961 60.000 30.81 8.68 41.09 3.71
1832 1926 2.564947 CTGCCTAGGCCTTCTTCGATAT 59.435 50.000 30.81 0.00 41.09 1.63
1884 1978 3.266636 TCTGTGTGCATGTAATTACGGG 58.733 45.455 10.92 6.55 0.00 5.28
1949 2043 6.055231 TCCAGTTTTGTCGTGTTCAATAAG 57.945 37.500 0.00 0.00 0.00 1.73
2094 2188 6.565811 CGCTCATGTGAAGTATAGTCTCTCTC 60.566 46.154 0.00 0.00 0.00 3.20
2096 2190 7.307989 GCTCATGTGAAGTATAGTCTCTCTCTC 60.308 44.444 0.00 0.00 0.00 3.20
2097 2191 7.801104 TCATGTGAAGTATAGTCTCTCTCTCT 58.199 38.462 0.00 0.00 0.00 3.10
2098 2192 7.931407 TCATGTGAAGTATAGTCTCTCTCTCTC 59.069 40.741 0.00 0.00 0.00 3.20
2099 2193 7.432148 TGTGAAGTATAGTCTCTCTCTCTCT 57.568 40.000 0.00 0.00 0.00 3.10
2100 2194 7.857456 TGTGAAGTATAGTCTCTCTCTCTCTT 58.143 38.462 0.00 0.00 0.00 2.85
2101 2195 8.325787 TGTGAAGTATAGTCTCTCTCTCTCTTT 58.674 37.037 0.00 0.00 0.00 2.52
2102 2196 9.174166 GTGAAGTATAGTCTCTCTCTCTCTTTT 57.826 37.037 0.00 0.00 0.00 2.27
2103 2197 9.747898 TGAAGTATAGTCTCTCTCTCTCTTTTT 57.252 33.333 0.00 0.00 0.00 1.94
2162 2258 2.422832 ACCTTTCTCACTCGGTATCGTC 59.577 50.000 0.00 0.00 37.69 4.20
2444 2556 9.922477 AATTTTAACCCAATTTGACCCTTTTTA 57.078 25.926 0.00 0.00 0.00 1.52
2479 2591 7.946381 AATTCAAGATCTAACCTCTTTTCCC 57.054 36.000 0.00 0.00 30.60 3.97
2486 2598 2.002018 AACCTCTTTTCCCACCGCCA 62.002 55.000 0.00 0.00 0.00 5.69
2487 2599 1.675641 CCTCTTTTCCCACCGCCAG 60.676 63.158 0.00 0.00 0.00 4.85
2488 2600 1.374947 CTCTTTTCCCACCGCCAGA 59.625 57.895 0.00 0.00 0.00 3.86
2489 2601 0.674895 CTCTTTTCCCACCGCCAGAG 60.675 60.000 0.00 0.00 0.00 3.35
2490 2602 1.125093 TCTTTTCCCACCGCCAGAGA 61.125 55.000 0.00 0.00 0.00 3.10
2491 2603 0.955919 CTTTTCCCACCGCCAGAGAC 60.956 60.000 0.00 0.00 0.00 3.36
2492 2604 2.406002 TTTTCCCACCGCCAGAGACC 62.406 60.000 0.00 0.00 0.00 3.85
2495 2607 2.363795 CCACCGCCAGAGACCCTA 60.364 66.667 0.00 0.00 0.00 3.53
2496 2608 1.987855 CCACCGCCAGAGACCCTAA 60.988 63.158 0.00 0.00 0.00 2.69
2497 2609 1.218316 CACCGCCAGAGACCCTAAC 59.782 63.158 0.00 0.00 0.00 2.34
2498 2610 2.348888 ACCGCCAGAGACCCTAACG 61.349 63.158 0.00 0.00 0.00 3.18
2499 2611 2.494918 CGCCAGAGACCCTAACGG 59.505 66.667 0.00 0.00 37.81 4.44
2529 2641 3.721370 TACCTACCGACGAGGCCCC 62.721 68.421 0.00 0.00 46.52 5.80
2552 2664 1.144057 GGTAGGCCACTCATCCACG 59.856 63.158 5.01 0.00 34.09 4.94
2554 2666 0.249398 GTAGGCCACTCATCCACGTT 59.751 55.000 5.01 0.00 0.00 3.99
2618 2730 3.816367 GATGCTCCTGGCGGTAGGC 62.816 68.421 0.00 0.00 45.43 3.93
2627 2739 0.754472 TGGCGGTAGGCTGTTATACC 59.246 55.000 0.00 0.00 44.18 2.73
2635 2747 0.034476 GGCTGTTATACCCTACCGCC 59.966 60.000 0.00 0.00 37.46 6.13
2638 2750 2.037144 CTGTTATACCCTACCGCCAGT 58.963 52.381 0.00 0.00 0.00 4.00
2639 2751 2.433239 CTGTTATACCCTACCGCCAGTT 59.567 50.000 0.00 0.00 0.00 3.16
2640 2752 2.431782 TGTTATACCCTACCGCCAGTTC 59.568 50.000 0.00 0.00 0.00 3.01
2641 2753 1.708341 TATACCCTACCGCCAGTTCC 58.292 55.000 0.00 0.00 0.00 3.62
2642 2754 0.031414 ATACCCTACCGCCAGTTCCT 60.031 55.000 0.00 0.00 0.00 3.36
2643 2755 0.252375 TACCCTACCGCCAGTTCCTT 60.252 55.000 0.00 0.00 0.00 3.36
2644 2756 0.252375 ACCCTACCGCCAGTTCCTTA 60.252 55.000 0.00 0.00 0.00 2.69
2645 2757 0.906775 CCCTACCGCCAGTTCCTTAA 59.093 55.000 0.00 0.00 0.00 1.85
2646 2758 1.489230 CCCTACCGCCAGTTCCTTAAT 59.511 52.381 0.00 0.00 0.00 1.40
2647 2759 2.701951 CCCTACCGCCAGTTCCTTAATA 59.298 50.000 0.00 0.00 0.00 0.98
2648 2760 3.493873 CCCTACCGCCAGTTCCTTAATAC 60.494 52.174 0.00 0.00 0.00 1.89
2649 2761 2.304751 ACCGCCAGTTCCTTAATACG 57.695 50.000 0.00 0.00 0.00 3.06
2650 2762 0.935196 CCGCCAGTTCCTTAATACGC 59.065 55.000 0.00 0.00 0.00 4.42
2651 2763 1.472728 CCGCCAGTTCCTTAATACGCT 60.473 52.381 0.00 0.00 0.00 5.07
2652 2764 1.593006 CGCCAGTTCCTTAATACGCTG 59.407 52.381 0.00 0.00 0.00 5.18
2653 2765 2.629051 GCCAGTTCCTTAATACGCTGT 58.371 47.619 0.00 0.00 0.00 4.40
2654 2766 2.608090 GCCAGTTCCTTAATACGCTGTC 59.392 50.000 0.00 0.00 0.00 3.51
2655 2767 2.858344 CCAGTTCCTTAATACGCTGTCG 59.142 50.000 0.00 0.00 42.43 4.35
2656 2768 2.858344 CAGTTCCTTAATACGCTGTCGG 59.142 50.000 0.00 0.00 40.69 4.79
2657 2769 2.159142 AGTTCCTTAATACGCTGTCGGG 60.159 50.000 0.00 0.00 40.69 5.14
2658 2770 1.766494 TCCTTAATACGCTGTCGGGA 58.234 50.000 0.00 0.00 40.69 5.14
2659 2771 1.679680 TCCTTAATACGCTGTCGGGAG 59.320 52.381 0.00 0.00 40.69 4.30
2660 2772 1.269621 CCTTAATACGCTGTCGGGAGG 60.270 57.143 0.00 0.00 40.69 4.30
2661 2773 0.748450 TTAATACGCTGTCGGGAGGG 59.252 55.000 0.00 0.00 40.69 4.30
2662 2774 0.106569 TAATACGCTGTCGGGAGGGA 60.107 55.000 5.82 0.00 40.69 4.20
2663 2775 1.673808 AATACGCTGTCGGGAGGGAC 61.674 60.000 5.82 0.00 40.69 4.46
2667 2779 2.442272 CTGTCGGGAGGGACGGAT 60.442 66.667 0.00 0.00 44.39 4.18
2668 2780 2.038329 TGTCGGGAGGGACGGATT 59.962 61.111 0.00 0.00 39.83 3.01
2669 2781 1.611261 TGTCGGGAGGGACGGATTT 60.611 57.895 0.00 0.00 39.83 2.17
2670 2782 1.196104 TGTCGGGAGGGACGGATTTT 61.196 55.000 0.00 0.00 39.83 1.82
2671 2783 0.743345 GTCGGGAGGGACGGATTTTG 60.743 60.000 0.00 0.00 0.00 2.44
2672 2784 0.905809 TCGGGAGGGACGGATTTTGA 60.906 55.000 0.00 0.00 0.00 2.69
2673 2785 0.180406 CGGGAGGGACGGATTTTGAT 59.820 55.000 0.00 0.00 0.00 2.57
2674 2786 1.408266 CGGGAGGGACGGATTTTGATT 60.408 52.381 0.00 0.00 0.00 2.57
2675 2787 2.024414 GGGAGGGACGGATTTTGATTG 58.976 52.381 0.00 0.00 0.00 2.67
2676 2788 2.024414 GGAGGGACGGATTTTGATTGG 58.976 52.381 0.00 0.00 0.00 3.16
2677 2789 1.405463 GAGGGACGGATTTTGATTGGC 59.595 52.381 0.00 0.00 0.00 4.52
2678 2790 1.181786 GGGACGGATTTTGATTGGCA 58.818 50.000 0.00 0.00 0.00 4.92
2679 2791 1.756538 GGGACGGATTTTGATTGGCAT 59.243 47.619 0.00 0.00 0.00 4.40
2680 2792 2.168313 GGGACGGATTTTGATTGGCATT 59.832 45.455 0.00 0.00 0.00 3.56
2681 2793 3.189285 GGACGGATTTTGATTGGCATTG 58.811 45.455 0.00 0.00 0.00 2.82
2682 2794 3.368323 GGACGGATTTTGATTGGCATTGT 60.368 43.478 0.00 0.00 0.00 2.71
2683 2795 3.848726 ACGGATTTTGATTGGCATTGTC 58.151 40.909 0.00 0.00 0.00 3.18
2684 2796 3.511146 ACGGATTTTGATTGGCATTGTCT 59.489 39.130 0.00 0.00 0.00 3.41
2685 2797 4.704540 ACGGATTTTGATTGGCATTGTCTA 59.295 37.500 0.00 0.00 0.00 2.59
2686 2798 5.036737 CGGATTTTGATTGGCATTGTCTAC 58.963 41.667 0.00 0.00 0.00 2.59
2687 2799 5.351458 GGATTTTGATTGGCATTGTCTACC 58.649 41.667 0.00 0.00 0.00 3.18
2688 2800 5.127682 GGATTTTGATTGGCATTGTCTACCT 59.872 40.000 0.00 0.00 0.00 3.08
2689 2801 5.643379 TTTTGATTGGCATTGTCTACCTC 57.357 39.130 0.00 0.00 0.00 3.85
2690 2802 3.281727 TGATTGGCATTGTCTACCTCC 57.718 47.619 0.00 0.00 0.00 4.30
2691 2803 2.213499 GATTGGCATTGTCTACCTCCG 58.787 52.381 0.00 0.00 0.00 4.63
2692 2804 1.271856 TTGGCATTGTCTACCTCCGA 58.728 50.000 0.00 0.00 0.00 4.55
2693 2805 0.824109 TGGCATTGTCTACCTCCGAG 59.176 55.000 0.00 0.00 0.00 4.63
2694 2806 1.112113 GGCATTGTCTACCTCCGAGA 58.888 55.000 0.00 0.00 0.00 4.04
2695 2807 1.067821 GGCATTGTCTACCTCCGAGAG 59.932 57.143 0.00 0.00 0.00 3.20
2709 2821 0.103937 CGAGAGGAAGATCAGGTGGC 59.896 60.000 0.00 0.00 0.00 5.01
2710 2822 1.198713 GAGAGGAAGATCAGGTGGCA 58.801 55.000 0.00 0.00 0.00 4.92
2711 2823 1.767681 GAGAGGAAGATCAGGTGGCAT 59.232 52.381 0.00 0.00 0.00 4.40
2712 2824 1.767681 AGAGGAAGATCAGGTGGCATC 59.232 52.381 0.00 0.00 0.00 3.91
2713 2825 1.767681 GAGGAAGATCAGGTGGCATCT 59.232 52.381 0.00 0.00 0.00 2.90
2714 2826 2.172293 GAGGAAGATCAGGTGGCATCTT 59.828 50.000 0.00 0.00 41.22 2.40
2715 2827 3.387962 AGGAAGATCAGGTGGCATCTTA 58.612 45.455 0.00 0.00 39.09 2.10
2716 2828 3.135530 AGGAAGATCAGGTGGCATCTTAC 59.864 47.826 0.00 0.00 39.09 2.34
2717 2829 3.135530 GGAAGATCAGGTGGCATCTTACT 59.864 47.826 0.00 0.00 39.09 2.24
2718 2830 4.384647 GGAAGATCAGGTGGCATCTTACTT 60.385 45.833 0.00 4.01 39.09 2.24
2719 2831 4.148128 AGATCAGGTGGCATCTTACTTG 57.852 45.455 0.00 0.00 0.00 3.16
2720 2832 2.787473 TCAGGTGGCATCTTACTTGG 57.213 50.000 0.00 0.00 0.00 3.61
2721 2833 1.281867 TCAGGTGGCATCTTACTTGGG 59.718 52.381 0.00 0.00 0.00 4.12
2722 2834 0.625849 AGGTGGCATCTTACTTGGGG 59.374 55.000 0.00 0.00 0.00 4.96
2723 2835 0.331616 GGTGGCATCTTACTTGGGGT 59.668 55.000 0.00 0.00 0.00 4.95
2724 2836 1.272480 GGTGGCATCTTACTTGGGGTT 60.272 52.381 0.00 0.00 0.00 4.11
2725 2837 2.025699 GGTGGCATCTTACTTGGGGTTA 60.026 50.000 0.00 0.00 0.00 2.85
2726 2838 3.279434 GTGGCATCTTACTTGGGGTTAG 58.721 50.000 0.00 0.00 0.00 2.34
2727 2839 3.054655 GTGGCATCTTACTTGGGGTTAGA 60.055 47.826 0.00 0.00 37.87 2.10
2728 2840 3.785887 TGGCATCTTACTTGGGGTTAGAT 59.214 43.478 0.00 0.00 42.73 1.98
2733 2845 5.677319 TCTTACTTGGGGTTAGATGTGAG 57.323 43.478 0.00 0.00 29.94 3.51
2734 2846 5.338632 TCTTACTTGGGGTTAGATGTGAGA 58.661 41.667 0.00 0.00 29.94 3.27
2735 2847 3.983044 ACTTGGGGTTAGATGTGAGAC 57.017 47.619 0.00 0.00 0.00 3.36
2736 2848 2.233922 ACTTGGGGTTAGATGTGAGACG 59.766 50.000 0.00 0.00 0.00 4.18
2737 2849 0.535335 TGGGGTTAGATGTGAGACGC 59.465 55.000 0.00 0.00 0.00 5.19
2738 2850 0.824759 GGGGTTAGATGTGAGACGCT 59.175 55.000 0.00 0.00 0.00 5.07
2739 2851 1.471676 GGGGTTAGATGTGAGACGCTG 60.472 57.143 0.00 0.00 0.00 5.18
2740 2852 1.471676 GGGTTAGATGTGAGACGCTGG 60.472 57.143 0.00 0.00 0.00 4.85
2741 2853 1.476891 GGTTAGATGTGAGACGCTGGA 59.523 52.381 0.00 0.00 0.00 3.86
2742 2854 2.094182 GGTTAGATGTGAGACGCTGGAA 60.094 50.000 0.00 0.00 0.00 3.53
2743 2855 3.182967 GTTAGATGTGAGACGCTGGAAG 58.817 50.000 0.00 0.00 0.00 3.46
2744 2856 1.261480 AGATGTGAGACGCTGGAAGT 58.739 50.000 0.00 0.00 35.30 3.01
2745 2857 1.620819 AGATGTGAGACGCTGGAAGTT 59.379 47.619 0.00 0.00 35.30 2.66
2746 2858 1.996191 GATGTGAGACGCTGGAAGTTC 59.004 52.381 0.00 0.00 35.30 3.01
2747 2859 0.318699 TGTGAGACGCTGGAAGTTCG 60.319 55.000 0.00 0.00 35.30 3.95
2748 2860 1.009389 GTGAGACGCTGGAAGTTCGG 61.009 60.000 0.00 0.00 35.30 4.30
2749 2861 1.176619 TGAGACGCTGGAAGTTCGGA 61.177 55.000 0.00 0.00 35.30 4.55
2750 2862 0.456995 GAGACGCTGGAAGTTCGGAG 60.457 60.000 0.00 0.00 35.30 4.63
2751 2863 2.048127 ACGCTGGAAGTTCGGAGC 60.048 61.111 13.16 13.16 35.30 4.70
2753 2865 2.048127 GCTGGAAGTTCGGAGCGT 60.048 61.111 9.13 0.00 35.30 5.07
2754 2866 2.383527 GCTGGAAGTTCGGAGCGTG 61.384 63.158 9.13 0.00 35.30 5.34
2755 2867 1.738099 CTGGAAGTTCGGAGCGTGG 60.738 63.158 0.00 0.00 0.00 4.94
2756 2868 2.342648 GGAAGTTCGGAGCGTGGT 59.657 61.111 0.00 0.00 0.00 4.16
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
34 35 3.629398 AGAGTCCAAGAGTGCAAAGTTTG 59.371 43.478 11.41 11.41 0.00 2.93
50 51 5.747675 GGCTTTTACGTATTGTCTAGAGTCC 59.252 44.000 0.00 0.00 0.00 3.85
55 56 7.829378 AAGAAGGCTTTTACGTATTGTCTAG 57.171 36.000 0.00 0.00 0.00 2.43
123 126 8.548721 CATGTCCTTTATATCTAAACAACGACC 58.451 37.037 0.00 0.00 0.00 4.79
272 276 1.098712 TGGTGGTGTGGCTTTCGAAC 61.099 55.000 0.00 0.00 0.00 3.95
274 278 1.525077 GTGGTGGTGTGGCTTTCGA 60.525 57.895 0.00 0.00 0.00 3.71
320 365 0.744414 TTGCTAGCTGAATGGGCGAC 60.744 55.000 17.23 0.00 34.52 5.19
422 471 5.723672 TGGATATTGATTCGAGGTCCTAC 57.276 43.478 0.00 0.00 0.00 3.18
424 473 5.832539 ATTGGATATTGATTCGAGGTCCT 57.167 39.130 0.00 0.00 0.00 3.85
425 474 5.875359 GGTATTGGATATTGATTCGAGGTCC 59.125 44.000 0.00 1.96 0.00 4.46
426 475 6.702329 AGGTATTGGATATTGATTCGAGGTC 58.298 40.000 0.00 0.00 0.00 3.85
427 476 6.688073 AGGTATTGGATATTGATTCGAGGT 57.312 37.500 0.00 0.00 0.00 3.85
428 477 7.986085 AAAGGTATTGGATATTGATTCGAGG 57.014 36.000 0.00 0.00 0.00 4.63
429 478 9.884465 GAAAAAGGTATTGGATATTGATTCGAG 57.116 33.333 0.00 0.00 0.00 4.04
553 632 9.204570 GACTTACAGCTCTGTATTAGTTCAAAA 57.795 33.333 10.20 0.00 44.54 2.44
635 714 5.254032 AGATTTTCCTGAATCCCACTTACCT 59.746 40.000 0.00 0.00 36.84 3.08
639 718 5.012893 GTGAGATTTTCCTGAATCCCACTT 58.987 41.667 5.39 0.00 39.93 3.16
641 720 4.593956 AGTGAGATTTTCCTGAATCCCAC 58.406 43.478 4.67 4.67 42.00 4.61
845 924 5.048713 AGGTCTCGGCTTTTATTGTTCTTTG 60.049 40.000 0.00 0.00 0.00 2.77
854 933 4.216411 TGCTTTAGGTCTCGGCTTTTAT 57.784 40.909 0.00 0.00 0.00 1.40
855 934 3.688694 TGCTTTAGGTCTCGGCTTTTA 57.311 42.857 0.00 0.00 0.00 1.52
935 1016 1.881925 CGTGGTGAAAATGGAGGAGCA 60.882 52.381 0.00 0.00 0.00 4.26
964 1045 0.978667 GTTCTCCTCCCCTCCTGTCC 60.979 65.000 0.00 0.00 0.00 4.02
988 1069 1.378911 TCGCCATGGCTTCTGCAAT 60.379 52.632 33.07 0.00 41.91 3.56
1056 1137 3.969250 GATTCCAAGGACGCCGGCA 62.969 63.158 28.98 2.90 0.00 5.69
1111 1193 3.383185 ACAACGAAATCCCTGCTTTTTGA 59.617 39.130 0.00 0.00 0.00 2.69
1437 1519 9.276590 CATGCAGGACTTGATATAGTATTTTGA 57.723 33.333 0.00 0.00 0.00 2.69
1443 1525 6.425210 AAGCATGCAGGACTTGATATAGTA 57.575 37.500 21.98 0.00 0.00 1.82
1444 1526 4.970860 AGCATGCAGGACTTGATATAGT 57.029 40.909 21.98 0.00 0.00 2.12
1445 1527 6.293845 GGAAAAGCATGCAGGACTTGATATAG 60.294 42.308 21.98 0.00 0.00 1.31
1446 1528 5.532406 GGAAAAGCATGCAGGACTTGATATA 59.468 40.000 21.98 0.00 0.00 0.86
1447 1529 4.340381 GGAAAAGCATGCAGGACTTGATAT 59.660 41.667 21.98 0.00 0.00 1.63
1454 1536 1.244019 ACCGGAAAAGCATGCAGGAC 61.244 55.000 21.98 8.36 0.00 3.85
1784 1869 2.483013 CGCGGTCTGAAGGATTGGATTA 60.483 50.000 0.00 0.00 0.00 1.75
1785 1870 1.743772 CGCGGTCTGAAGGATTGGATT 60.744 52.381 0.00 0.00 0.00 3.01
1786 1871 0.179073 CGCGGTCTGAAGGATTGGAT 60.179 55.000 0.00 0.00 0.00 3.41
1787 1872 1.218047 CGCGGTCTGAAGGATTGGA 59.782 57.895 0.00 0.00 0.00 3.53
1788 1873 1.079127 ACGCGGTCTGAAGGATTGG 60.079 57.895 12.47 0.00 0.00 3.16
1789 1874 0.670546 ACACGCGGTCTGAAGGATTG 60.671 55.000 12.47 0.00 0.00 2.67
1790 1875 0.034896 AACACGCGGTCTGAAGGATT 59.965 50.000 12.47 0.00 0.00 3.01
1791 1876 0.670546 CAACACGCGGTCTGAAGGAT 60.671 55.000 12.47 0.00 0.00 3.24
1792 1877 1.300620 CAACACGCGGTCTGAAGGA 60.301 57.895 12.47 0.00 0.00 3.36
1818 1912 6.128526 CGGAGAAAATTATATCGAAGAAGGCC 60.129 42.308 0.00 0.00 43.58 5.19
1824 1918 5.612865 GCAGCGGAGAAAATTATATCGAAG 58.387 41.667 0.00 0.00 0.00 3.79
1829 1923 4.883083 TCTCGCAGCGGAGAAAATTATAT 58.117 39.130 16.42 0.00 39.99 0.86
1832 1926 2.665649 TCTCGCAGCGGAGAAAATTA 57.334 45.000 16.42 0.00 39.99 1.40
1884 1978 0.934436 GCAACACGATGCCACAACAC 60.934 55.000 0.00 0.00 40.49 3.32
1908 2002 1.661112 GGAAAGAGTATCACTGCGCAC 59.339 52.381 5.66 0.00 37.82 5.34
1949 2043 3.762779 CCAGCAATCCGAAAGATTTCAC 58.237 45.455 6.16 0.00 42.86 3.18
2101 2195 8.463930 ACTTCACATGGTTATCAGAAGAAAAA 57.536 30.769 0.00 0.00 36.78 1.94
2102 2196 9.739276 ATACTTCACATGGTTATCAGAAGAAAA 57.261 29.630 0.00 0.00 36.78 2.29
2105 2199 9.201989 ACTATACTTCACATGGTTATCAGAAGA 57.798 33.333 0.00 0.00 36.78 2.87
2106 2200 9.469807 GACTATACTTCACATGGTTATCAGAAG 57.530 37.037 0.00 0.00 38.64 2.85
2162 2258 4.135153 CTCTGTCGGCCGAGGGTG 62.135 72.222 31.97 20.01 0.00 4.61
2389 2501 8.821894 CCGAAAAGGTTAAAACATCAAATTTGA 58.178 29.630 22.52 22.52 37.08 2.69
2416 2528 6.755542 AGGGTCAAATTGGGTTAAAATTCA 57.244 33.333 0.00 0.00 0.00 2.57
2455 2567 7.394641 GTGGGAAAAGAGGTTAGATCTTGAATT 59.605 37.037 0.00 0.00 37.10 2.17
2456 2568 6.887002 GTGGGAAAAGAGGTTAGATCTTGAAT 59.113 38.462 0.00 0.00 37.10 2.57
2457 2569 6.238648 GTGGGAAAAGAGGTTAGATCTTGAA 58.761 40.000 0.00 0.00 37.10 2.69
2458 2570 5.280521 GGTGGGAAAAGAGGTTAGATCTTGA 60.281 44.000 0.00 0.00 37.10 3.02
2470 2582 0.674895 CTCTGGCGGTGGGAAAAGAG 60.675 60.000 0.00 0.00 0.00 2.85
2479 2591 1.218316 GTTAGGGTCTCTGGCGGTG 59.782 63.158 0.00 0.00 0.00 4.94
2492 2604 5.966742 GGTAGTTATACCCTACCGTTAGG 57.033 47.826 10.56 0.00 45.11 2.69
2503 2615 5.860676 GCCTCGTCGGTAGGTAGTTATACC 61.861 54.167 2.28 0.00 42.75 2.73
2504 2616 3.187432 GCCTCGTCGGTAGGTAGTTATAC 59.813 52.174 2.28 0.00 36.43 1.47
2505 2617 3.403038 GCCTCGTCGGTAGGTAGTTATA 58.597 50.000 2.28 0.00 36.43 0.98
2506 2618 2.225467 GCCTCGTCGGTAGGTAGTTAT 58.775 52.381 2.28 0.00 36.43 1.89
2507 2619 1.668419 GCCTCGTCGGTAGGTAGTTA 58.332 55.000 2.28 0.00 36.43 2.24
2508 2620 1.034292 GGCCTCGTCGGTAGGTAGTT 61.034 60.000 0.00 0.00 36.43 2.24
2509 2621 1.452833 GGCCTCGTCGGTAGGTAGT 60.453 63.158 0.00 0.00 36.43 2.73
2552 2664 3.367025 AGATGTCGTTTACTTGCGCTAAC 59.633 43.478 9.73 4.53 0.00 2.34
2554 2666 2.921121 CAGATGTCGTTTACTTGCGCTA 59.079 45.455 9.73 0.00 0.00 4.26
2569 2681 1.637338 TGACAGCAGAGGACAGATGT 58.363 50.000 0.00 0.00 35.06 3.06
2618 2730 2.037144 ACTGGCGGTAGGGTATAACAG 58.963 52.381 0.00 0.00 0.00 3.16
2627 2739 3.725490 GTATTAAGGAACTGGCGGTAGG 58.275 50.000 0.00 0.00 40.86 3.18
2635 2747 2.858344 CCGACAGCGTATTAAGGAACTG 59.142 50.000 0.00 0.00 34.94 3.16
2638 2750 2.100252 CTCCCGACAGCGTATTAAGGAA 59.900 50.000 0.00 0.00 35.23 3.36
2639 2751 1.679680 CTCCCGACAGCGTATTAAGGA 59.320 52.381 0.00 0.00 35.23 3.36
2640 2752 1.269621 CCTCCCGACAGCGTATTAAGG 60.270 57.143 0.00 0.00 35.23 2.69
2641 2753 1.269621 CCCTCCCGACAGCGTATTAAG 60.270 57.143 0.00 0.00 35.23 1.85
2642 2754 0.748450 CCCTCCCGACAGCGTATTAA 59.252 55.000 0.00 0.00 35.23 1.40
2643 2755 0.106569 TCCCTCCCGACAGCGTATTA 60.107 55.000 0.00 0.00 35.23 0.98
2644 2756 1.380785 TCCCTCCCGACAGCGTATT 60.381 57.895 0.00 0.00 35.23 1.89
2645 2757 2.125961 GTCCCTCCCGACAGCGTAT 61.126 63.158 0.00 0.00 35.23 3.06
2646 2758 2.753043 GTCCCTCCCGACAGCGTA 60.753 66.667 0.00 0.00 35.23 4.42
2650 2762 1.614241 AAATCCGTCCCTCCCGACAG 61.614 60.000 0.00 0.00 32.74 3.51
2651 2763 1.196104 AAAATCCGTCCCTCCCGACA 61.196 55.000 0.00 0.00 32.74 4.35
2652 2764 0.743345 CAAAATCCGTCCCTCCCGAC 60.743 60.000 0.00 0.00 0.00 4.79
2653 2765 0.905809 TCAAAATCCGTCCCTCCCGA 60.906 55.000 0.00 0.00 0.00 5.14
2654 2766 0.180406 ATCAAAATCCGTCCCTCCCG 59.820 55.000 0.00 0.00 0.00 5.14
2655 2767 2.024414 CAATCAAAATCCGTCCCTCCC 58.976 52.381 0.00 0.00 0.00 4.30
2656 2768 2.024414 CCAATCAAAATCCGTCCCTCC 58.976 52.381 0.00 0.00 0.00 4.30
2657 2769 1.405463 GCCAATCAAAATCCGTCCCTC 59.595 52.381 0.00 0.00 0.00 4.30
2658 2770 1.272425 TGCCAATCAAAATCCGTCCCT 60.272 47.619 0.00 0.00 0.00 4.20
2659 2771 1.181786 TGCCAATCAAAATCCGTCCC 58.818 50.000 0.00 0.00 0.00 4.46
2660 2772 3.189285 CAATGCCAATCAAAATCCGTCC 58.811 45.455 0.00 0.00 0.00 4.79
2661 2773 3.848726 ACAATGCCAATCAAAATCCGTC 58.151 40.909 0.00 0.00 0.00 4.79
2662 2774 3.511146 AGACAATGCCAATCAAAATCCGT 59.489 39.130 0.00 0.00 0.00 4.69
2663 2775 4.114058 AGACAATGCCAATCAAAATCCG 57.886 40.909 0.00 0.00 0.00 4.18
2664 2776 5.127682 AGGTAGACAATGCCAATCAAAATCC 59.872 40.000 0.00 0.00 35.79 3.01
2665 2777 6.212888 AGGTAGACAATGCCAATCAAAATC 57.787 37.500 0.00 0.00 35.79 2.17
2666 2778 5.127682 GGAGGTAGACAATGCCAATCAAAAT 59.872 40.000 0.00 0.00 35.79 1.82
2667 2779 4.462483 GGAGGTAGACAATGCCAATCAAAA 59.538 41.667 0.00 0.00 35.79 2.44
2668 2780 4.016444 GGAGGTAGACAATGCCAATCAAA 58.984 43.478 0.00 0.00 35.79 2.69
2669 2781 3.620488 GGAGGTAGACAATGCCAATCAA 58.380 45.455 0.00 0.00 35.79 2.57
2670 2782 2.419990 CGGAGGTAGACAATGCCAATCA 60.420 50.000 0.00 0.00 35.79 2.57
2671 2783 2.158957 TCGGAGGTAGACAATGCCAATC 60.159 50.000 0.00 0.00 35.79 2.67
2672 2784 1.837439 TCGGAGGTAGACAATGCCAAT 59.163 47.619 0.00 0.00 35.79 3.16
2673 2785 1.207089 CTCGGAGGTAGACAATGCCAA 59.793 52.381 0.00 0.00 35.79 4.52
2674 2786 0.824109 CTCGGAGGTAGACAATGCCA 59.176 55.000 0.00 0.00 35.79 4.92
2675 2787 1.067821 CTCTCGGAGGTAGACAATGCC 59.932 57.143 4.96 0.00 0.00 4.40
2676 2788 1.067821 CCTCTCGGAGGTAGACAATGC 59.932 57.143 4.96 0.00 44.25 3.56
2677 2789 3.067461 CTTCCTCTCGGAGGTAGACAATG 59.933 52.174 16.44 0.65 45.94 2.82
2678 2790 3.053544 TCTTCCTCTCGGAGGTAGACAAT 60.054 47.826 18.68 0.00 46.34 2.71
2679 2791 2.307980 TCTTCCTCTCGGAGGTAGACAA 59.692 50.000 18.68 7.56 46.34 3.18
2680 2792 1.914108 TCTTCCTCTCGGAGGTAGACA 59.086 52.381 18.68 5.18 46.34 3.41
2681 2793 2.713863 TCTTCCTCTCGGAGGTAGAC 57.286 55.000 18.68 0.00 46.34 2.59
2687 2799 1.680735 CACCTGATCTTCCTCTCGGAG 59.319 57.143 0.00 0.00 41.25 4.63
2688 2800 1.686428 CCACCTGATCTTCCTCTCGGA 60.686 57.143 0.00 0.00 37.60 4.55
2689 2801 0.749649 CCACCTGATCTTCCTCTCGG 59.250 60.000 0.00 0.00 0.00 4.63
2690 2802 0.103937 GCCACCTGATCTTCCTCTCG 59.896 60.000 0.00 0.00 0.00 4.04
2691 2803 1.198713 TGCCACCTGATCTTCCTCTC 58.801 55.000 0.00 0.00 0.00 3.20
2692 2804 1.767681 GATGCCACCTGATCTTCCTCT 59.232 52.381 0.00 0.00 0.00 3.69
2693 2805 1.767681 AGATGCCACCTGATCTTCCTC 59.232 52.381 0.00 0.00 0.00 3.71
2694 2806 1.890552 AGATGCCACCTGATCTTCCT 58.109 50.000 0.00 0.00 0.00 3.36
2695 2807 2.725221 AAGATGCCACCTGATCTTCC 57.275 50.000 0.00 0.00 34.46 3.46
2696 2808 4.414337 AGTAAGATGCCACCTGATCTTC 57.586 45.455 0.00 0.00 39.24 2.87
2697 2809 4.521146 CAAGTAAGATGCCACCTGATCTT 58.479 43.478 0.00 0.00 41.01 2.40
2698 2810 3.118112 CCAAGTAAGATGCCACCTGATCT 60.118 47.826 0.00 0.00 0.00 2.75
2699 2811 3.209410 CCAAGTAAGATGCCACCTGATC 58.791 50.000 0.00 0.00 0.00 2.92
2700 2812 2.092212 CCCAAGTAAGATGCCACCTGAT 60.092 50.000 0.00 0.00 0.00 2.90
2701 2813 1.281867 CCCAAGTAAGATGCCACCTGA 59.718 52.381 0.00 0.00 0.00 3.86
2702 2814 1.683011 CCCCAAGTAAGATGCCACCTG 60.683 57.143 0.00 0.00 0.00 4.00
2703 2815 0.625849 CCCCAAGTAAGATGCCACCT 59.374 55.000 0.00 0.00 0.00 4.00
2704 2816 0.331616 ACCCCAAGTAAGATGCCACC 59.668 55.000 0.00 0.00 0.00 4.61
2705 2817 2.215942 AACCCCAAGTAAGATGCCAC 57.784 50.000 0.00 0.00 0.00 5.01
2706 2818 3.186283 TCTAACCCCAAGTAAGATGCCA 58.814 45.455 0.00 0.00 0.00 4.92
2707 2819 3.926058 TCTAACCCCAAGTAAGATGCC 57.074 47.619 0.00 0.00 0.00 4.40
2708 2820 4.576463 CACATCTAACCCCAAGTAAGATGC 59.424 45.833 9.84 0.00 44.73 3.91
2709 2821 5.989477 TCACATCTAACCCCAAGTAAGATG 58.011 41.667 8.65 8.65 45.78 2.90
2710 2822 5.964477 TCTCACATCTAACCCCAAGTAAGAT 59.036 40.000 0.00 0.00 0.00 2.40
2711 2823 5.187186 GTCTCACATCTAACCCCAAGTAAGA 59.813 44.000 0.00 0.00 0.00 2.10
2712 2824 5.420409 GTCTCACATCTAACCCCAAGTAAG 58.580 45.833 0.00 0.00 0.00 2.34
2713 2825 4.081862 CGTCTCACATCTAACCCCAAGTAA 60.082 45.833 0.00 0.00 0.00 2.24
2714 2826 3.446161 CGTCTCACATCTAACCCCAAGTA 59.554 47.826 0.00 0.00 0.00 2.24
2715 2827 2.233922 CGTCTCACATCTAACCCCAAGT 59.766 50.000 0.00 0.00 0.00 3.16
2716 2828 2.893637 CGTCTCACATCTAACCCCAAG 58.106 52.381 0.00 0.00 0.00 3.61
2717 2829 1.066430 GCGTCTCACATCTAACCCCAA 60.066 52.381 0.00 0.00 0.00 4.12
2718 2830 0.535335 GCGTCTCACATCTAACCCCA 59.465 55.000 0.00 0.00 0.00 4.96
2719 2831 0.824759 AGCGTCTCACATCTAACCCC 59.175 55.000 0.00 0.00 0.00 4.95
2720 2832 1.471676 CCAGCGTCTCACATCTAACCC 60.472 57.143 0.00 0.00 0.00 4.11
2721 2833 1.476891 TCCAGCGTCTCACATCTAACC 59.523 52.381 0.00 0.00 0.00 2.85
2722 2834 2.941453 TCCAGCGTCTCACATCTAAC 57.059 50.000 0.00 0.00 0.00 2.34
2723 2835 2.826128 ACTTCCAGCGTCTCACATCTAA 59.174 45.455 0.00 0.00 0.00 2.10
2724 2836 2.447443 ACTTCCAGCGTCTCACATCTA 58.553 47.619 0.00 0.00 0.00 1.98
2725 2837 1.261480 ACTTCCAGCGTCTCACATCT 58.739 50.000 0.00 0.00 0.00 2.90
2726 2838 1.996191 GAACTTCCAGCGTCTCACATC 59.004 52.381 0.00 0.00 0.00 3.06
2727 2839 1.670087 CGAACTTCCAGCGTCTCACAT 60.670 52.381 0.00 0.00 0.00 3.21
2728 2840 0.318699 CGAACTTCCAGCGTCTCACA 60.319 55.000 0.00 0.00 0.00 3.58
2729 2841 1.009389 CCGAACTTCCAGCGTCTCAC 61.009 60.000 0.00 0.00 0.00 3.51
2730 2842 1.176619 TCCGAACTTCCAGCGTCTCA 61.177 55.000 0.00 0.00 0.00 3.27
2731 2843 0.456995 CTCCGAACTTCCAGCGTCTC 60.457 60.000 0.00 0.00 0.00 3.36
2732 2844 1.587054 CTCCGAACTTCCAGCGTCT 59.413 57.895 0.00 0.00 0.00 4.18
2733 2845 2.095252 GCTCCGAACTTCCAGCGTC 61.095 63.158 0.00 0.00 0.00 5.19
2734 2846 2.048127 GCTCCGAACTTCCAGCGT 60.048 61.111 0.00 0.00 0.00 5.07
2736 2848 2.048127 ACGCTCCGAACTTCCAGC 60.048 61.111 0.00 0.00 0.00 4.85
2737 2849 1.738099 CCACGCTCCGAACTTCCAG 60.738 63.158 0.00 0.00 0.00 3.86
2738 2850 2.342279 CCACGCTCCGAACTTCCA 59.658 61.111 0.00 0.00 0.00 3.53
2739 2851 2.342648 ACCACGCTCCGAACTTCC 59.657 61.111 0.00 0.00 0.00 3.46


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.