Multiple sequence alignment - TraesCS2A01G214400

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS2A01G214400 chr2A 100.000 3713 0 0 1 3713 200181959 200178247 0.000000e+00 6857
1 TraesCS2A01G214400 chr2D 97.744 3236 72 1 1 3235 187532497 187529262 0.000000e+00 5570
2 TraesCS2A01G214400 chr2D 89.083 229 15 7 3230 3450 187529182 187528956 3.650000e-70 276
3 TraesCS2A01G214400 chr2B 97.252 3239 81 4 1 3236 243572099 243568866 0.000000e+00 5481
4 TraesCS2A01G214400 chr2B 89.362 141 7 4 3231 3365 243568778 243568640 1.770000e-38 171


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS2A01G214400 chr2A 200178247 200181959 3712 True 6857 6857 100.0000 1 3713 1 chr2A.!!$R1 3712
1 TraesCS2A01G214400 chr2D 187528956 187532497 3541 True 2923 5570 93.4135 1 3450 2 chr2D.!!$R1 3449
2 TraesCS2A01G214400 chr2B 243568640 243572099 3459 True 2826 5481 93.3070 1 3365 2 chr2B.!!$R1 3364

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
116 117 0.888619 TAGTTCCACTGGCAGACTCG 59.111 55.000 23.66 6.27 0.00 4.18 F
686 690 1.143684 ACATGTGAGCTGGGAGTGTTT 59.856 47.619 0.00 0.00 0.00 2.83 F
2400 2404 0.247736 ACTCTGCCATGTTCGAGTCC 59.752 55.000 0.00 0.00 31.51 3.85 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1587 1591 0.242017 GACCCTTCACAATGTGCTGC 59.758 55.0 8.78 0.0 32.98 5.25 R
2656 2660 0.112995 TTCCAGCCCAAGAGCATTGT 59.887 50.0 1.60 0.0 34.23 2.71 R
3434 3540 0.790814 CGCCACGAAAACTTCTCCTC 59.209 55.0 0.00 0.0 0.00 3.71 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
59 60 3.785486 TGTCCAGATTGATACTTGAGCG 58.215 45.455 0.00 0.00 0.00 5.03
105 106 3.444388 CCACTGTAGTCCTCTAGTTCCAC 59.556 52.174 0.00 0.00 0.00 4.02
116 117 0.888619 TAGTTCCACTGGCAGACTCG 59.111 55.000 23.66 6.27 0.00 4.18
181 182 3.053917 ACACCTGTGGTTGTCCTTTAAGT 60.054 43.478 1.91 0.00 31.02 2.24
369 370 2.806608 TAGTGTTTGGTCCGTGAGAC 57.193 50.000 0.00 0.00 45.51 3.36
413 414 8.398665 CACTGTTAGTAGGGATTTTATTCTTGC 58.601 37.037 0.00 0.00 0.00 4.01
585 586 4.094476 TCCAAGGGAAAGGTAGAGTACTG 58.906 47.826 0.00 0.00 0.00 2.74
686 690 1.143684 ACATGTGAGCTGGGAGTGTTT 59.856 47.619 0.00 0.00 0.00 2.83
838 842 1.234615 GCTTTGTCGCCTGTTGCCTA 61.235 55.000 0.00 0.00 36.24 3.93
942 946 7.773224 CACCTACCATGGAATAAACAGTTCATA 59.227 37.037 21.47 0.00 0.00 2.15
1503 1507 1.157870 CGTTGCCTGGAGTTGTTCGT 61.158 55.000 0.00 0.00 0.00 3.85
1587 1591 0.388294 GGGAGTTAAGGGACGATCGG 59.612 60.000 20.98 1.23 0.00 4.18
1590 1594 0.460311 AGTTAAGGGACGATCGGCAG 59.540 55.000 24.83 0.00 0.00 4.85
1980 1984 3.266510 TGGATCACACTGATACAAGCC 57.733 47.619 0.00 0.00 44.26 4.35
2040 2044 2.963101 CACTGGAATAGATGACCCGGTA 59.037 50.000 0.00 0.00 36.58 4.02
2232 2236 2.514592 CAGCTGCACCATACCCCG 60.515 66.667 0.00 0.00 0.00 5.73
2385 2389 5.144159 TGGAGACCATGGATTACTACTCT 57.856 43.478 21.47 7.95 0.00 3.24
2400 2404 0.247736 ACTCTGCCATGTTCGAGTCC 59.752 55.000 0.00 0.00 31.51 3.85
2430 2434 4.681421 TTGCCTCGAGACAGCAAG 57.319 55.556 19.51 1.40 41.35 4.01
2583 2587 3.019003 GCCTTACCCGCTGAGCTCA 62.019 63.158 17.19 17.19 0.00 4.26
2601 2605 4.584743 AGCTCATATGTGAACTCGGTGATA 59.415 41.667 8.94 0.00 33.05 2.15
2656 2660 0.692419 GCTGGAGGAGAAGGATGGGA 60.692 60.000 0.00 0.00 0.00 4.37
3104 3109 2.364973 TAGGATCAGGGCGTGCCA 60.365 61.111 13.76 0.00 37.98 4.92
3181 3186 0.161024 GCACGTTCGTTCTACACTGC 59.839 55.000 0.00 0.00 0.00 4.40
3272 3370 2.991250 TGGAGTTTAGCTGATTGCCTC 58.009 47.619 0.00 0.00 44.23 4.70
3320 3423 1.202651 ACGTCCAAACTCCCAAGTCTG 60.203 52.381 0.00 0.00 33.48 3.51
3384 3488 0.828022 ACGTTCTCTGTGGTGAACCA 59.172 50.000 0.00 0.00 45.30 3.67
3419 3523 2.695127 TTATTTTAGGCTTCCGGCGA 57.305 45.000 9.30 0.00 42.94 5.54
3425 3529 0.466739 TAGGCTTCCGGCGATACTCA 60.467 55.000 9.30 0.00 42.94 3.41
3433 3539 1.202417 CCGGCGATACTCATTCAGTGT 60.202 52.381 9.30 0.00 36.43 3.55
3434 3540 1.854743 CGGCGATACTCATTCAGTGTG 59.145 52.381 0.00 0.00 36.43 3.82
3437 3543 3.119291 GCGATACTCATTCAGTGTGAGG 58.881 50.000 13.60 0.00 45.72 3.86
3446 3552 5.684704 TCATTCAGTGTGAGGAGAAGTTTT 58.315 37.500 0.00 0.00 0.00 2.43
3450 3556 3.246226 CAGTGTGAGGAGAAGTTTTCGTG 59.754 47.826 0.00 0.00 34.02 4.35
3451 3557 2.544267 GTGTGAGGAGAAGTTTTCGTGG 59.456 50.000 0.00 0.00 34.02 4.94
3452 3558 1.531578 GTGAGGAGAAGTTTTCGTGGC 59.468 52.381 0.00 0.00 34.02 5.01
3453 3559 0.790814 GAGGAGAAGTTTTCGTGGCG 59.209 55.000 0.00 0.00 34.02 5.69
3454 3560 0.106149 AGGAGAAGTTTTCGTGGCGT 59.894 50.000 0.00 0.00 34.02 5.68
3455 3561 0.942252 GGAGAAGTTTTCGTGGCGTT 59.058 50.000 0.00 0.00 34.02 4.84
3456 3562 1.332686 GGAGAAGTTTTCGTGGCGTTT 59.667 47.619 0.00 0.00 34.02 3.60
3457 3563 2.545106 GGAGAAGTTTTCGTGGCGTTTA 59.455 45.455 0.00 0.00 34.02 2.01
3458 3564 3.187842 GGAGAAGTTTTCGTGGCGTTTAT 59.812 43.478 0.00 0.00 34.02 1.40
3459 3565 4.141855 AGAAGTTTTCGTGGCGTTTATG 57.858 40.909 0.00 0.00 34.02 1.90
3460 3566 2.981400 AGTTTTCGTGGCGTTTATGG 57.019 45.000 0.00 0.00 0.00 2.74
3461 3567 2.223745 AGTTTTCGTGGCGTTTATGGT 58.776 42.857 0.00 0.00 0.00 3.55
3462 3568 2.031508 AGTTTTCGTGGCGTTTATGGTG 60.032 45.455 0.00 0.00 0.00 4.17
3463 3569 0.875728 TTTCGTGGCGTTTATGGTGG 59.124 50.000 0.00 0.00 0.00 4.61
3464 3570 1.579084 TTCGTGGCGTTTATGGTGGC 61.579 55.000 0.00 0.00 0.00 5.01
3465 3571 2.038269 CGTGGCGTTTATGGTGGCT 61.038 57.895 0.00 0.00 0.00 4.75
3466 3572 1.582610 CGTGGCGTTTATGGTGGCTT 61.583 55.000 0.00 0.00 0.00 4.35
3467 3573 0.170339 GTGGCGTTTATGGTGGCTTC 59.830 55.000 0.00 0.00 0.00 3.86
3468 3574 1.302383 TGGCGTTTATGGTGGCTTCG 61.302 55.000 0.00 0.00 0.00 3.79
3469 3575 1.226295 GCGTTTATGGTGGCTTCGC 60.226 57.895 0.00 0.00 35.86 4.70
3486 3592 6.734104 GCTTCGCCAATCTCAAGATAATAT 57.266 37.500 0.00 0.00 33.73 1.28
3487 3593 6.541086 GCTTCGCCAATCTCAAGATAATATG 58.459 40.000 0.00 0.00 33.73 1.78
3488 3594 6.486253 TTCGCCAATCTCAAGATAATATGC 57.514 37.500 0.00 0.00 33.73 3.14
3489 3595 4.937620 TCGCCAATCTCAAGATAATATGCC 59.062 41.667 0.00 0.00 33.73 4.40
3490 3596 4.201753 CGCCAATCTCAAGATAATATGCCG 60.202 45.833 0.00 0.00 33.73 5.69
3491 3597 4.095483 GCCAATCTCAAGATAATATGCCGG 59.905 45.833 0.00 0.00 33.73 6.13
3492 3598 5.248640 CCAATCTCAAGATAATATGCCGGT 58.751 41.667 1.90 0.00 33.73 5.28
3493 3599 5.707298 CCAATCTCAAGATAATATGCCGGTT 59.293 40.000 1.90 0.00 33.73 4.44
3494 3600 6.128172 CCAATCTCAAGATAATATGCCGGTTC 60.128 42.308 1.90 0.00 33.73 3.62
3495 3601 5.545063 TCTCAAGATAATATGCCGGTTCA 57.455 39.130 1.90 0.00 0.00 3.18
3496 3602 5.924356 TCTCAAGATAATATGCCGGTTCAA 58.076 37.500 1.90 0.00 0.00 2.69
3497 3603 6.533730 TCTCAAGATAATATGCCGGTTCAAT 58.466 36.000 1.90 0.00 0.00 2.57
3498 3604 6.650807 TCTCAAGATAATATGCCGGTTCAATC 59.349 38.462 1.90 0.00 0.00 2.67
3499 3605 6.533730 TCAAGATAATATGCCGGTTCAATCT 58.466 36.000 1.90 1.86 0.00 2.40
3500 3606 6.650807 TCAAGATAATATGCCGGTTCAATCTC 59.349 38.462 1.90 0.00 0.00 2.75
3501 3607 6.365970 AGATAATATGCCGGTTCAATCTCT 57.634 37.500 1.90 0.00 0.00 3.10
3502 3608 6.773638 AGATAATATGCCGGTTCAATCTCTT 58.226 36.000 1.90 0.00 0.00 2.85
3503 3609 7.907389 AGATAATATGCCGGTTCAATCTCTTA 58.093 34.615 1.90 0.00 0.00 2.10
3504 3610 8.375506 AGATAATATGCCGGTTCAATCTCTTAA 58.624 33.333 1.90 0.00 0.00 1.85
3505 3611 8.918202 ATAATATGCCGGTTCAATCTCTTAAA 57.082 30.769 1.90 0.00 0.00 1.52
3506 3612 4.965119 ATGCCGGTTCAATCTCTTAAAC 57.035 40.909 1.90 0.00 0.00 2.01
3507 3613 3.745799 TGCCGGTTCAATCTCTTAAACA 58.254 40.909 1.90 0.00 0.00 2.83
3508 3614 4.331968 TGCCGGTTCAATCTCTTAAACAT 58.668 39.130 1.90 0.00 0.00 2.71
3509 3615 4.155826 TGCCGGTTCAATCTCTTAAACATG 59.844 41.667 1.90 0.00 0.00 3.21
3510 3616 4.662145 CCGGTTCAATCTCTTAAACATGC 58.338 43.478 0.00 0.00 0.00 4.06
3511 3617 4.396166 CCGGTTCAATCTCTTAAACATGCT 59.604 41.667 0.00 0.00 0.00 3.79
3512 3618 5.447818 CCGGTTCAATCTCTTAAACATGCTC 60.448 44.000 0.00 0.00 0.00 4.26
3513 3619 5.122239 CGGTTCAATCTCTTAAACATGCTCA 59.878 40.000 0.00 0.00 0.00 4.26
3514 3620 6.183360 CGGTTCAATCTCTTAAACATGCTCAT 60.183 38.462 0.00 0.00 0.00 2.90
3515 3621 7.011389 CGGTTCAATCTCTTAAACATGCTCATA 59.989 37.037 0.00 0.00 0.00 2.15
3516 3622 8.341173 GGTTCAATCTCTTAAACATGCTCATAG 58.659 37.037 0.00 0.00 0.00 2.23
3517 3623 8.341173 GTTCAATCTCTTAAACATGCTCATAGG 58.659 37.037 0.00 0.00 0.00 2.57
3518 3624 6.994496 TCAATCTCTTAAACATGCTCATAGGG 59.006 38.462 0.00 0.00 0.00 3.53
3519 3625 5.957771 TCTCTTAAACATGCTCATAGGGT 57.042 39.130 0.00 0.00 0.00 4.34
3520 3626 7.618019 ATCTCTTAAACATGCTCATAGGGTA 57.382 36.000 0.00 0.00 0.00 3.69
3521 3627 7.432148 TCTCTTAAACATGCTCATAGGGTAA 57.568 36.000 0.00 0.00 0.00 2.85
3522 3628 7.857456 TCTCTTAAACATGCTCATAGGGTAAA 58.143 34.615 0.00 0.00 0.00 2.01
3523 3629 8.325787 TCTCTTAAACATGCTCATAGGGTAAAA 58.674 33.333 0.00 0.00 0.00 1.52
3524 3630 8.871629 TCTTAAACATGCTCATAGGGTAAAAA 57.128 30.769 0.00 0.00 0.00 1.94
3525 3631 8.956426 TCTTAAACATGCTCATAGGGTAAAAAG 58.044 33.333 0.00 0.00 0.00 2.27
3526 3632 8.644374 TTAAACATGCTCATAGGGTAAAAAGT 57.356 30.769 0.00 0.00 0.00 2.66
3527 3633 6.515272 AACATGCTCATAGGGTAAAAAGTG 57.485 37.500 0.00 0.00 0.00 3.16
3528 3634 5.570320 ACATGCTCATAGGGTAAAAAGTGT 58.430 37.500 0.00 0.00 0.00 3.55
3529 3635 5.415701 ACATGCTCATAGGGTAAAAAGTGTG 59.584 40.000 0.00 0.00 0.00 3.82
3530 3636 4.980573 TGCTCATAGGGTAAAAAGTGTGT 58.019 39.130 0.00 0.00 0.00 3.72
3531 3637 6.116711 TGCTCATAGGGTAAAAAGTGTGTA 57.883 37.500 0.00 0.00 0.00 2.90
3532 3638 6.535540 TGCTCATAGGGTAAAAAGTGTGTAA 58.464 36.000 0.00 0.00 0.00 2.41
3533 3639 7.172342 TGCTCATAGGGTAAAAAGTGTGTAAT 58.828 34.615 0.00 0.00 0.00 1.89
3534 3640 7.668052 TGCTCATAGGGTAAAAAGTGTGTAATT 59.332 33.333 0.00 0.00 0.00 1.40
3535 3641 7.968405 GCTCATAGGGTAAAAAGTGTGTAATTG 59.032 37.037 0.00 0.00 0.00 2.32
3536 3642 7.822658 TCATAGGGTAAAAAGTGTGTAATTGC 58.177 34.615 0.00 0.00 0.00 3.56
3537 3643 7.668052 TCATAGGGTAAAAAGTGTGTAATTGCT 59.332 33.333 0.00 0.00 0.00 3.91
3538 3644 6.724893 AGGGTAAAAAGTGTGTAATTGCTT 57.275 33.333 0.00 0.00 0.00 3.91
3539 3645 7.119709 AGGGTAAAAAGTGTGTAATTGCTTT 57.880 32.000 0.00 0.00 33.20 3.51
3540 3646 7.561251 AGGGTAAAAAGTGTGTAATTGCTTTT 58.439 30.769 0.00 0.00 41.24 2.27
3541 3647 8.697292 AGGGTAAAAAGTGTGTAATTGCTTTTA 58.303 29.630 0.00 0.00 39.37 1.52
3542 3648 9.483916 GGGTAAAAAGTGTGTAATTGCTTTTAT 57.516 29.630 0.00 0.00 39.37 1.40
3546 3652 9.705290 AAAAAGTGTGTAATTGCTTTTATAGGG 57.295 29.630 0.00 0.00 39.37 3.53
3547 3653 8.644374 AAAGTGTGTAATTGCTTTTATAGGGA 57.356 30.769 0.00 0.00 0.00 4.20
3548 3654 8.823220 AAGTGTGTAATTGCTTTTATAGGGAT 57.177 30.769 0.00 0.00 0.00 3.85
3549 3655 9.914834 AAGTGTGTAATTGCTTTTATAGGGATA 57.085 29.630 0.00 0.00 0.00 2.59
3550 3656 9.914834 AGTGTGTAATTGCTTTTATAGGGATAA 57.085 29.630 0.00 0.00 0.00 1.75
3577 3683 9.777297 ATATATGTGAGTATGTATGTGTTTGCA 57.223 29.630 0.00 0.00 0.00 4.08
3578 3684 8.681486 ATATGTGAGTATGTATGTGTTTGCAT 57.319 30.769 0.00 0.00 0.00 3.96
3579 3685 6.421377 TGTGAGTATGTATGTGTTTGCATC 57.579 37.500 0.00 0.00 0.00 3.91
3580 3686 6.172630 TGTGAGTATGTATGTGTTTGCATCT 58.827 36.000 0.00 0.00 0.00 2.90
3581 3687 7.327214 TGTGAGTATGTATGTGTTTGCATCTA 58.673 34.615 0.00 0.00 0.00 1.98
3582 3688 7.986889 TGTGAGTATGTATGTGTTTGCATCTAT 59.013 33.333 0.00 0.00 0.00 1.98
3583 3689 9.476202 GTGAGTATGTATGTGTTTGCATCTATA 57.524 33.333 0.00 0.00 0.00 1.31
3589 3695 8.504812 TGTATGTGTTTGCATCTATATTGTGT 57.495 30.769 0.00 0.00 0.00 3.72
3590 3696 8.955388 TGTATGTGTTTGCATCTATATTGTGTT 58.045 29.630 0.00 0.00 0.00 3.32
3591 3697 9.787532 GTATGTGTTTGCATCTATATTGTGTTT 57.212 29.630 0.00 0.00 0.00 2.83
3621 3727 9.762933 AATAGACAAAATGTTGCACAATTTACT 57.237 25.926 6.28 8.48 38.39 2.24
3623 3729 8.801715 AGACAAAATGTTGCACAATTTACTAG 57.198 30.769 6.28 0.00 38.39 2.57
3624 3730 8.413229 AGACAAAATGTTGCACAATTTACTAGT 58.587 29.630 0.00 0.00 38.39 2.57
3625 3731 8.351495 ACAAAATGTTGCACAATTTACTAGTG 57.649 30.769 5.39 4.19 38.39 2.74
3626 3732 8.194104 ACAAAATGTTGCACAATTTACTAGTGA 58.806 29.630 5.39 0.00 38.39 3.41
3627 3733 9.195411 CAAAATGTTGCACAATTTACTAGTGAT 57.805 29.630 5.39 0.00 30.13 3.06
3628 3734 8.746922 AAATGTTGCACAATTTACTAGTGATG 57.253 30.769 5.39 1.76 35.33 3.07
3629 3735 7.686438 ATGTTGCACAATTTACTAGTGATGA 57.314 32.000 5.39 0.00 35.33 2.92
3630 3736 7.503521 TGTTGCACAATTTACTAGTGATGAA 57.496 32.000 5.39 0.00 35.33 2.57
3631 3737 8.109705 TGTTGCACAATTTACTAGTGATGAAT 57.890 30.769 5.39 0.00 35.33 2.57
3632 3738 8.575589 TGTTGCACAATTTACTAGTGATGAATT 58.424 29.630 5.39 4.37 35.33 2.17
3633 3739 8.853345 GTTGCACAATTTACTAGTGATGAATTG 58.147 33.333 21.41 21.41 41.23 2.32
3634 3740 8.334263 TGCACAATTTACTAGTGATGAATTGA 57.666 30.769 25.65 12.51 39.05 2.57
3635 3741 8.236586 TGCACAATTTACTAGTGATGAATTGAC 58.763 33.333 25.65 20.35 39.05 3.18
3636 3742 8.454106 GCACAATTTACTAGTGATGAATTGACT 58.546 33.333 25.65 12.94 39.05 3.41
3642 3748 8.648557 TTACTAGTGATGAATTGACTATGTGC 57.351 34.615 5.39 0.00 0.00 4.57
3643 3749 6.643388 ACTAGTGATGAATTGACTATGTGCA 58.357 36.000 0.00 0.00 0.00 4.57
3644 3750 7.278135 ACTAGTGATGAATTGACTATGTGCAT 58.722 34.615 0.00 0.00 0.00 3.96
3645 3751 6.615264 AGTGATGAATTGACTATGTGCATC 57.385 37.500 0.00 0.00 33.24 3.91
3646 3752 6.117488 AGTGATGAATTGACTATGTGCATCA 58.883 36.000 0.00 0.00 38.51 3.07
3647 3753 6.367686 TGATGAATTGACTATGTGCATCAC 57.632 37.500 0.00 0.00 36.65 3.06
3648 3754 6.117488 TGATGAATTGACTATGTGCATCACT 58.883 36.000 0.00 0.00 36.65 3.41
3649 3755 6.600427 TGATGAATTGACTATGTGCATCACTT 59.400 34.615 0.00 0.00 36.65 3.16
3650 3756 6.185852 TGAATTGACTATGTGCATCACTTG 57.814 37.500 0.00 0.00 35.11 3.16
3651 3757 5.939296 TGAATTGACTATGTGCATCACTTGA 59.061 36.000 0.00 0.00 35.11 3.02
3652 3758 6.600427 TGAATTGACTATGTGCATCACTTGAT 59.400 34.615 0.00 0.00 35.11 2.57
3653 3759 7.769970 TGAATTGACTATGTGCATCACTTGATA 59.230 33.333 0.00 0.00 35.11 2.15
3654 3760 6.908870 TTGACTATGTGCATCACTTGATAC 57.091 37.500 0.00 0.00 35.11 2.24
3655 3761 5.976458 TGACTATGTGCATCACTTGATACA 58.024 37.500 0.00 0.00 35.11 2.29
3656 3762 6.405538 TGACTATGTGCATCACTTGATACAA 58.594 36.000 0.00 0.00 35.11 2.41
3657 3763 6.878389 TGACTATGTGCATCACTTGATACAAA 59.122 34.615 0.00 0.00 35.11 2.83
3658 3764 7.064966 TGACTATGTGCATCACTTGATACAAAG 59.935 37.037 0.00 0.00 35.11 2.77
3659 3765 5.571784 ATGTGCATCACTTGATACAAAGG 57.428 39.130 0.00 0.00 35.11 3.11
3660 3766 4.397420 TGTGCATCACTTGATACAAAGGT 58.603 39.130 0.00 0.00 35.11 3.50
3661 3767 4.455533 TGTGCATCACTTGATACAAAGGTC 59.544 41.667 0.00 0.00 35.11 3.85
3662 3768 4.455533 GTGCATCACTTGATACAAAGGTCA 59.544 41.667 0.00 0.00 30.32 4.02
3663 3769 4.696877 TGCATCACTTGATACAAAGGTCAG 59.303 41.667 0.00 0.00 32.63 3.51
3664 3770 4.937620 GCATCACTTGATACAAAGGTCAGA 59.062 41.667 0.00 0.00 32.63 3.27
3665 3771 5.064452 GCATCACTTGATACAAAGGTCAGAG 59.936 44.000 0.00 0.00 32.63 3.35
3666 3772 6.401394 CATCACTTGATACAAAGGTCAGAGA 58.599 40.000 0.00 0.00 32.63 3.10
3667 3773 6.611613 TCACTTGATACAAAGGTCAGAGAT 57.388 37.500 0.00 0.00 0.00 2.75
3668 3774 7.718334 TCACTTGATACAAAGGTCAGAGATA 57.282 36.000 0.00 0.00 0.00 1.98
3669 3775 8.134202 TCACTTGATACAAAGGTCAGAGATAA 57.866 34.615 0.00 0.00 0.00 1.75
3670 3776 8.762645 TCACTTGATACAAAGGTCAGAGATAAT 58.237 33.333 0.00 0.00 0.00 1.28
3671 3777 9.039870 CACTTGATACAAAGGTCAGAGATAATC 57.960 37.037 0.00 0.00 0.00 1.75
3672 3778 8.207545 ACTTGATACAAAGGTCAGAGATAATCC 58.792 37.037 0.00 0.00 0.00 3.01
3673 3779 7.921041 TGATACAAAGGTCAGAGATAATCCT 57.079 36.000 0.00 0.00 0.00 3.24
3674 3780 8.324191 TGATACAAAGGTCAGAGATAATCCTT 57.676 34.615 0.00 0.00 39.75 3.36
3675 3781 8.772250 TGATACAAAGGTCAGAGATAATCCTTT 58.228 33.333 0.00 0.00 45.55 3.11
3676 3782 9.620259 GATACAAAGGTCAGAGATAATCCTTTT 57.380 33.333 4.99 1.67 43.22 2.27
3677 3783 7.929941 ACAAAGGTCAGAGATAATCCTTTTC 57.070 36.000 4.99 0.00 43.22 2.29
3678 3784 7.694093 ACAAAGGTCAGAGATAATCCTTTTCT 58.306 34.615 4.99 0.00 43.22 2.52
3679 3785 8.166726 ACAAAGGTCAGAGATAATCCTTTTCTT 58.833 33.333 4.99 0.00 43.22 2.52
3680 3786 9.018582 CAAAGGTCAGAGATAATCCTTTTCTTT 57.981 33.333 4.99 0.00 43.22 2.52
3681 3787 9.593565 AAAGGTCAGAGATAATCCTTTTCTTTT 57.406 29.630 0.00 0.00 43.22 2.27
3682 3788 9.593565 AAGGTCAGAGATAATCCTTTTCTTTTT 57.406 29.630 0.00 0.00 35.32 1.94
3705 3811 9.985318 TTTTTAAAAGAGATGTTGCACAATTTG 57.015 25.926 0.14 0.00 0.00 2.32
3706 3812 8.939201 TTTAAAAGAGATGTTGCACAATTTGA 57.061 26.923 2.79 0.00 0.00 2.69
3707 3813 6.833342 AAAAGAGATGTTGCACAATTTGAC 57.167 33.333 2.79 0.00 0.00 3.18
3708 3814 5.779529 AAGAGATGTTGCACAATTTGACT 57.220 34.783 2.79 0.00 0.00 3.41
3709 3815 5.368256 AGAGATGTTGCACAATTTGACTC 57.632 39.130 2.79 0.00 0.00 3.36
3710 3816 4.083643 AGAGATGTTGCACAATTTGACTCG 60.084 41.667 2.79 0.00 0.00 4.18
3711 3817 3.565482 AGATGTTGCACAATTTGACTCGT 59.435 39.130 2.79 0.00 0.00 4.18
3712 3818 4.754618 AGATGTTGCACAATTTGACTCGTA 59.245 37.500 2.79 0.00 0.00 3.43
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
59 60 5.060940 GCACAAATAATGAAGAAAGGAACGC 59.939 40.000 0.00 0.00 0.00 4.84
105 106 1.931841 CAATCATGACGAGTCTGCCAG 59.068 52.381 0.00 0.00 0.00 4.85
116 117 6.016192 AGCATGAAAGGATCATCAATCATGAC 60.016 38.462 23.57 17.40 45.91 3.06
241 242 2.692557 TCCGCATAAATCCAACCCATTG 59.307 45.455 0.00 0.00 35.40 2.82
369 370 5.662456 ACAGTGATCAATGACATCTGAGAG 58.338 41.667 28.44 0.00 0.00 3.20
604 605 7.999679 ACGTGACATTCCAATTCATTATGATT 58.000 30.769 0.00 0.00 0.00 2.57
838 842 9.746457 GCATATAATTTAGAGGAAAGGAGGAAT 57.254 33.333 0.00 0.00 0.00 3.01
870 874 7.117236 CAGAACATTTTGCTTTATCAGTGCAAT 59.883 33.333 0.00 0.00 44.55 3.56
942 946 8.635765 TGTACATAGCAAAAGAGAGGAAATTT 57.364 30.769 0.00 0.00 0.00 1.82
1383 1387 0.804364 TGCTCGTTGTTGCATCATCC 59.196 50.000 0.00 0.00 33.94 3.51
1503 1507 1.608055 CACCAGATGCAAAGTGTGGA 58.392 50.000 8.84 0.00 34.34 4.02
1587 1591 0.242017 GACCCTTCACAATGTGCTGC 59.758 55.000 8.78 0.00 32.98 5.25
1590 1594 5.163652 GGTTAATAGACCCTTCACAATGTGC 60.164 44.000 8.78 0.00 33.41 4.57
1980 1984 2.124403 CCAGGCCTTGCAGCTAGG 60.124 66.667 17.89 17.89 35.80 3.02
2040 2044 1.043816 CACCTCGGGCATACTCTGAT 58.956 55.000 0.00 0.00 0.00 2.90
2088 2092 6.942532 TTGAACTCTTTAGACATGCTTGTT 57.057 33.333 6.70 0.45 35.79 2.83
2124 2128 7.847711 AGCATAGACAGATAGAGGTGTAAAT 57.152 36.000 0.00 0.00 0.00 1.40
2277 2281 2.571548 GGACAGCCCTTTCACCATG 58.428 57.895 0.00 0.00 0.00 3.66
2385 2389 3.458872 GATGGACTCGAACATGGCA 57.541 52.632 0.00 0.00 0.00 4.92
2400 2404 2.480555 GGCAAGTTGGCGTCGATG 59.519 61.111 14.24 0.00 31.79 3.84
2430 2434 2.111384 TGCTCCACACTTATCCTCTCC 58.889 52.381 0.00 0.00 0.00 3.71
2583 2587 6.480320 GCTTCTTTATCACCGAGTTCACATAT 59.520 38.462 0.00 0.00 0.00 1.78
2601 2605 2.029844 GCACGCGAGGAGCTTCTTT 61.030 57.895 15.93 0.00 45.59 2.52
2656 2660 0.112995 TTCCAGCCCAAGAGCATTGT 59.887 50.000 1.60 0.00 34.23 2.71
3104 3109 0.391528 GCCCAATCGCATTTTGCCTT 60.392 50.000 0.00 0.00 41.12 4.35
3163 3168 0.429736 CGCAGTGTAGAACGAACGTG 59.570 55.000 0.00 0.00 0.00 4.49
3181 3186 1.878088 CAGAATTGCCCATCATCCTCG 59.122 52.381 0.00 0.00 0.00 4.63
3218 3223 2.004808 CTATCCTGTCGCCTGCACGA 62.005 60.000 0.00 0.00 40.36 4.35
3272 3370 1.119684 TGTATGTCATGGGACTCGGG 58.880 55.000 0.00 0.00 44.61 5.14
3340 3443 3.688185 CCATAGCTCATTCGCTGCAATAT 59.312 43.478 0.00 0.00 41.12 1.28
3391 3495 7.118535 GCCGGAAGCCTAAAATAAATTCAAAAA 59.881 33.333 5.05 0.00 34.35 1.94
3394 3498 5.656480 GCCGGAAGCCTAAAATAAATTCAA 58.344 37.500 5.05 0.00 34.35 2.69
3399 3503 2.988570 TCGCCGGAAGCCTAAAATAAA 58.011 42.857 5.05 0.00 38.78 1.40
3403 3507 1.483415 AGTATCGCCGGAAGCCTAAAA 59.517 47.619 5.05 0.00 38.78 1.52
3409 3513 1.140816 GAATGAGTATCGCCGGAAGC 58.859 55.000 5.05 0.00 38.61 3.86
3419 3523 5.719085 ACTTCTCCTCACACTGAATGAGTAT 59.281 40.000 10.49 0.00 41.78 2.12
3425 3529 4.752101 CGAAAACTTCTCCTCACACTGAAT 59.248 41.667 0.00 0.00 0.00 2.57
3433 3539 1.872237 CGCCACGAAAACTTCTCCTCA 60.872 52.381 0.00 0.00 0.00 3.86
3434 3540 0.790814 CGCCACGAAAACTTCTCCTC 59.209 55.000 0.00 0.00 0.00 3.71
3437 3543 2.750301 AAACGCCACGAAAACTTCTC 57.250 45.000 0.00 0.00 0.00 2.87
3446 3552 2.036006 GCCACCATAAACGCCACGA 61.036 57.895 0.00 0.00 0.00 4.35
3450 3556 1.427819 CGAAGCCACCATAAACGCC 59.572 57.895 0.00 0.00 0.00 5.68
3463 3569 6.541086 CATATTATCTTGAGATTGGCGAAGC 58.459 40.000 0.00 0.00 44.34 3.86
3464 3570 6.402983 GGCATATTATCTTGAGATTGGCGAAG 60.403 42.308 0.00 0.00 36.05 3.79
3465 3571 5.412594 GGCATATTATCTTGAGATTGGCGAA 59.587 40.000 0.00 0.00 36.05 4.70
3466 3572 4.937620 GGCATATTATCTTGAGATTGGCGA 59.062 41.667 0.00 0.00 36.05 5.54
3467 3573 4.201753 CGGCATATTATCTTGAGATTGGCG 60.202 45.833 18.44 18.44 44.72 5.69
3468 3574 4.095483 CCGGCATATTATCTTGAGATTGGC 59.905 45.833 0.00 3.35 36.05 4.52
3469 3575 5.248640 ACCGGCATATTATCTTGAGATTGG 58.751 41.667 0.00 0.00 36.05 3.16
3470 3576 6.427853 TGAACCGGCATATTATCTTGAGATTG 59.572 38.462 0.00 0.00 36.05 2.67
3471 3577 6.533730 TGAACCGGCATATTATCTTGAGATT 58.466 36.000 0.00 0.00 36.05 2.40
3472 3578 6.114187 TGAACCGGCATATTATCTTGAGAT 57.886 37.500 0.00 0.00 38.51 2.75
3473 3579 5.545063 TGAACCGGCATATTATCTTGAGA 57.455 39.130 0.00 0.00 0.00 3.27
3474 3580 6.652481 AGATTGAACCGGCATATTATCTTGAG 59.348 38.462 0.00 0.00 0.00 3.02
3475 3581 6.533730 AGATTGAACCGGCATATTATCTTGA 58.466 36.000 0.00 0.00 0.00 3.02
3476 3582 6.652481 AGAGATTGAACCGGCATATTATCTTG 59.348 38.462 0.00 0.00 0.00 3.02
3477 3583 6.773638 AGAGATTGAACCGGCATATTATCTT 58.226 36.000 0.00 0.00 0.00 2.40
3478 3584 6.365970 AGAGATTGAACCGGCATATTATCT 57.634 37.500 0.00 2.50 0.00 1.98
3479 3585 8.547967 TTAAGAGATTGAACCGGCATATTATC 57.452 34.615 0.00 0.00 0.00 1.75
3480 3586 8.784043 GTTTAAGAGATTGAACCGGCATATTAT 58.216 33.333 0.00 0.00 0.00 1.28
3481 3587 7.771361 TGTTTAAGAGATTGAACCGGCATATTA 59.229 33.333 0.00 0.00 0.00 0.98
3482 3588 6.601613 TGTTTAAGAGATTGAACCGGCATATT 59.398 34.615 0.00 0.00 0.00 1.28
3483 3589 6.119536 TGTTTAAGAGATTGAACCGGCATAT 58.880 36.000 0.00 0.00 0.00 1.78
3484 3590 5.492895 TGTTTAAGAGATTGAACCGGCATA 58.507 37.500 0.00 0.00 0.00 3.14
3485 3591 4.331968 TGTTTAAGAGATTGAACCGGCAT 58.668 39.130 0.00 0.00 0.00 4.40
3486 3592 3.745799 TGTTTAAGAGATTGAACCGGCA 58.254 40.909 0.00 0.00 0.00 5.69
3487 3593 4.662145 CATGTTTAAGAGATTGAACCGGC 58.338 43.478 0.00 0.00 0.00 6.13
3488 3594 4.396166 AGCATGTTTAAGAGATTGAACCGG 59.604 41.667 0.00 0.00 0.00 5.28
3489 3595 5.122239 TGAGCATGTTTAAGAGATTGAACCG 59.878 40.000 0.00 0.00 0.00 4.44
3490 3596 6.500684 TGAGCATGTTTAAGAGATTGAACC 57.499 37.500 0.00 0.00 0.00 3.62
3491 3597 8.341173 CCTATGAGCATGTTTAAGAGATTGAAC 58.659 37.037 0.00 0.00 0.00 3.18
3492 3598 7.500227 CCCTATGAGCATGTTTAAGAGATTGAA 59.500 37.037 0.00 0.00 0.00 2.69
3493 3599 6.994496 CCCTATGAGCATGTTTAAGAGATTGA 59.006 38.462 0.00 0.00 0.00 2.57
3494 3600 6.769822 ACCCTATGAGCATGTTTAAGAGATTG 59.230 38.462 0.00 0.00 0.00 2.67
3495 3601 6.904626 ACCCTATGAGCATGTTTAAGAGATT 58.095 36.000 0.00 0.00 0.00 2.40
3496 3602 6.506538 ACCCTATGAGCATGTTTAAGAGAT 57.493 37.500 0.00 0.00 0.00 2.75
3497 3603 5.957771 ACCCTATGAGCATGTTTAAGAGA 57.042 39.130 0.00 0.00 0.00 3.10
3498 3604 8.506168 TTTTACCCTATGAGCATGTTTAAGAG 57.494 34.615 0.00 0.00 0.00 2.85
3499 3605 8.871629 TTTTTACCCTATGAGCATGTTTAAGA 57.128 30.769 0.00 0.00 0.00 2.10
3500 3606 8.739972 ACTTTTTACCCTATGAGCATGTTTAAG 58.260 33.333 0.00 0.00 0.00 1.85
3501 3607 8.519526 CACTTTTTACCCTATGAGCATGTTTAA 58.480 33.333 0.00 0.00 0.00 1.52
3502 3608 7.668052 ACACTTTTTACCCTATGAGCATGTTTA 59.332 33.333 0.00 0.00 0.00 2.01
3503 3609 6.493458 ACACTTTTTACCCTATGAGCATGTTT 59.507 34.615 0.00 0.00 0.00 2.83
3504 3610 6.010219 ACACTTTTTACCCTATGAGCATGTT 58.990 36.000 0.00 0.00 0.00 2.71
3505 3611 5.415701 CACACTTTTTACCCTATGAGCATGT 59.584 40.000 0.00 0.00 0.00 3.21
3506 3612 5.415701 ACACACTTTTTACCCTATGAGCATG 59.584 40.000 0.00 0.00 0.00 4.06
3507 3613 5.570320 ACACACTTTTTACCCTATGAGCAT 58.430 37.500 0.00 0.00 0.00 3.79
3508 3614 4.980573 ACACACTTTTTACCCTATGAGCA 58.019 39.130 0.00 0.00 0.00 4.26
3509 3615 7.625828 ATTACACACTTTTTACCCTATGAGC 57.374 36.000 0.00 0.00 0.00 4.26
3510 3616 7.968405 GCAATTACACACTTTTTACCCTATGAG 59.032 37.037 0.00 0.00 0.00 2.90
3511 3617 7.668052 AGCAATTACACACTTTTTACCCTATGA 59.332 33.333 0.00 0.00 0.00 2.15
3512 3618 7.826690 AGCAATTACACACTTTTTACCCTATG 58.173 34.615 0.00 0.00 0.00 2.23
3513 3619 8.417273 AAGCAATTACACACTTTTTACCCTAT 57.583 30.769 0.00 0.00 0.00 2.57
3514 3620 7.826918 AAGCAATTACACACTTTTTACCCTA 57.173 32.000 0.00 0.00 0.00 3.53
3515 3621 6.724893 AAGCAATTACACACTTTTTACCCT 57.275 33.333 0.00 0.00 0.00 4.34
3516 3622 7.780008 AAAAGCAATTACACACTTTTTACCC 57.220 32.000 0.00 0.00 38.78 3.69
3520 3626 9.705290 CCCTATAAAAGCAATTACACACTTTTT 57.295 29.630 5.06 0.00 41.31 1.94
3521 3627 9.084533 TCCCTATAAAAGCAATTACACACTTTT 57.915 29.630 0.00 0.00 42.99 2.27
3522 3628 8.644374 TCCCTATAAAAGCAATTACACACTTT 57.356 30.769 0.00 0.00 33.92 2.66
3523 3629 8.823220 ATCCCTATAAAAGCAATTACACACTT 57.177 30.769 0.00 0.00 0.00 3.16
3524 3630 9.914834 TTATCCCTATAAAAGCAATTACACACT 57.085 29.630 0.00 0.00 0.00 3.55
3551 3657 9.777297 TGCAAACACATACATACTCACATATAT 57.223 29.630 0.00 0.00 0.00 0.86
3552 3658 9.777297 ATGCAAACACATACATACTCACATATA 57.223 29.630 0.00 0.00 0.00 0.86
3553 3659 8.681486 ATGCAAACACATACATACTCACATAT 57.319 30.769 0.00 0.00 0.00 1.78
3554 3660 7.986889 AGATGCAAACACATACATACTCACATA 59.013 33.333 0.00 0.00 0.00 2.29
3555 3661 6.825213 AGATGCAAACACATACATACTCACAT 59.175 34.615 0.00 0.00 0.00 3.21
3556 3662 6.172630 AGATGCAAACACATACATACTCACA 58.827 36.000 0.00 0.00 0.00 3.58
3557 3663 6.668541 AGATGCAAACACATACATACTCAC 57.331 37.500 0.00 0.00 0.00 3.51
3563 3669 9.123902 ACACAATATAGATGCAAACACATACAT 57.876 29.630 0.00 0.00 0.00 2.29
3564 3670 8.504812 ACACAATATAGATGCAAACACATACA 57.495 30.769 0.00 0.00 0.00 2.29
3565 3671 9.787532 AAACACAATATAGATGCAAACACATAC 57.212 29.630 0.00 0.00 0.00 2.39
3607 3713 8.853345 CAATTCATCACTAGTAAATTGTGCAAC 58.147 33.333 16.43 0.00 34.99 4.17
3608 3714 8.791675 TCAATTCATCACTAGTAAATTGTGCAA 58.208 29.630 20.27 8.35 38.10 4.08
3609 3715 8.236586 GTCAATTCATCACTAGTAAATTGTGCA 58.763 33.333 20.27 0.00 38.10 4.57
3610 3716 8.454106 AGTCAATTCATCACTAGTAAATTGTGC 58.546 33.333 20.27 16.61 38.10 4.57
3616 3722 9.098355 GCACATAGTCAATTCATCACTAGTAAA 57.902 33.333 0.00 0.00 0.00 2.01
3617 3723 8.257306 TGCACATAGTCAATTCATCACTAGTAA 58.743 33.333 0.00 0.00 0.00 2.24
3618 3724 7.781056 TGCACATAGTCAATTCATCACTAGTA 58.219 34.615 0.00 0.00 0.00 1.82
3619 3725 6.643388 TGCACATAGTCAATTCATCACTAGT 58.357 36.000 0.00 0.00 0.00 2.57
3620 3726 7.440255 TGATGCACATAGTCAATTCATCACTAG 59.560 37.037 0.00 0.00 35.39 2.57
3621 3727 7.274447 TGATGCACATAGTCAATTCATCACTA 58.726 34.615 0.00 0.00 35.39 2.74
3622 3728 6.117488 TGATGCACATAGTCAATTCATCACT 58.883 36.000 0.00 0.00 35.39 3.41
3623 3729 6.197276 GTGATGCACATAGTCAATTCATCAC 58.803 40.000 14.11 14.11 46.29 3.06
3624 3730 6.117488 AGTGATGCACATAGTCAATTCATCA 58.883 36.000 0.00 0.00 36.74 3.07
3625 3731 6.615264 AGTGATGCACATAGTCAATTCATC 57.385 37.500 0.00 0.00 36.74 2.92
3626 3732 6.600427 TCAAGTGATGCACATAGTCAATTCAT 59.400 34.615 0.00 0.00 36.74 2.57
3627 3733 5.939296 TCAAGTGATGCACATAGTCAATTCA 59.061 36.000 0.00 0.00 36.74 2.57
3628 3734 6.426980 TCAAGTGATGCACATAGTCAATTC 57.573 37.500 0.00 0.00 36.74 2.17
3629 3735 7.553760 TGTATCAAGTGATGCACATAGTCAATT 59.446 33.333 7.85 0.00 41.17 2.32
3630 3736 7.049754 TGTATCAAGTGATGCACATAGTCAAT 58.950 34.615 7.85 0.00 41.17 2.57
3631 3737 6.405538 TGTATCAAGTGATGCACATAGTCAA 58.594 36.000 7.85 0.00 41.17 3.18
3632 3738 5.976458 TGTATCAAGTGATGCACATAGTCA 58.024 37.500 7.85 0.00 41.17 3.41
3633 3739 6.908870 TTGTATCAAGTGATGCACATAGTC 57.091 37.500 11.06 0.00 44.68 2.59
3634 3740 6.317140 CCTTTGTATCAAGTGATGCACATAGT 59.683 38.462 11.06 0.00 44.68 2.12
3635 3741 6.317140 ACCTTTGTATCAAGTGATGCACATAG 59.683 38.462 11.06 8.83 44.68 2.23
3636 3742 6.179756 ACCTTTGTATCAAGTGATGCACATA 58.820 36.000 11.06 0.76 44.68 2.29
3637 3743 5.012239 ACCTTTGTATCAAGTGATGCACAT 58.988 37.500 11.06 0.00 44.68 3.21
3638 3744 4.397420 ACCTTTGTATCAAGTGATGCACA 58.603 39.130 11.06 5.06 44.68 4.57
3639 3745 4.455533 TGACCTTTGTATCAAGTGATGCAC 59.544 41.667 11.06 0.16 44.68 4.57
3640 3746 4.650734 TGACCTTTGTATCAAGTGATGCA 58.349 39.130 7.85 7.85 43.64 3.96
3641 3747 4.937620 TCTGACCTTTGTATCAAGTGATGC 59.062 41.667 4.00 3.34 37.61 3.91
3642 3748 6.401394 TCTCTGACCTTTGTATCAAGTGATG 58.599 40.000 4.00 0.00 36.05 3.07
3643 3749 6.611613 TCTCTGACCTTTGTATCAAGTGAT 57.388 37.500 0.00 0.00 38.51 3.06
3644 3750 6.611613 ATCTCTGACCTTTGTATCAAGTGA 57.388 37.500 0.00 0.00 0.00 3.41
3645 3751 8.954950 ATTATCTCTGACCTTTGTATCAAGTG 57.045 34.615 0.00 0.00 0.00 3.16
3646 3752 8.207545 GGATTATCTCTGACCTTTGTATCAAGT 58.792 37.037 0.00 0.00 0.00 3.16
3647 3753 8.428063 AGGATTATCTCTGACCTTTGTATCAAG 58.572 37.037 0.00 0.00 0.00 3.02
3648 3754 8.324191 AGGATTATCTCTGACCTTTGTATCAA 57.676 34.615 0.00 0.00 0.00 2.57
3649 3755 7.921041 AGGATTATCTCTGACCTTTGTATCA 57.079 36.000 0.00 0.00 0.00 2.15
3650 3756 9.620259 AAAAGGATTATCTCTGACCTTTGTATC 57.380 33.333 0.00 0.00 46.02 2.24
3651 3757 9.620259 GAAAAGGATTATCTCTGACCTTTGTAT 57.380 33.333 0.00 0.00 46.02 2.29
3652 3758 8.826765 AGAAAAGGATTATCTCTGACCTTTGTA 58.173 33.333 0.00 0.00 46.02 2.41
3653 3759 7.694093 AGAAAAGGATTATCTCTGACCTTTGT 58.306 34.615 0.00 0.00 46.02 2.83
3654 3760 8.572855 AAGAAAAGGATTATCTCTGACCTTTG 57.427 34.615 0.00 0.00 46.02 2.77
3656 3762 9.593565 AAAAAGAAAAGGATTATCTCTGACCTT 57.406 29.630 0.00 0.00 41.83 3.50


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.