Multiple sequence alignment - TraesCS2A01G213800

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS2A01G213800 chr2A 100.000 3069 0 0 1 3069 199576510 199579578 0.000000e+00 5668.0
1 TraesCS2A01G213800 chr2A 100.000 2929 0 0 3351 6279 199579860 199582788 0.000000e+00 5409.0
2 TraesCS2A01G213800 chr2A 98.127 267 5 0 3704 3970 438519178 438519444 3.430000e-127 466.0
3 TraesCS2A01G213800 chr2A 80.180 111 10 11 1726 1834 40441235 40441335 8.730000e-09 73.1
4 TraesCS2A01G213800 chr2B 91.133 1500 76 25 1 1477 240305090 240306555 0.000000e+00 1980.0
5 TraesCS2A01G213800 chr2B 92.556 1021 37 17 5284 6279 240308285 240309291 0.000000e+00 1428.0
6 TraesCS2A01G213800 chr2B 91.791 804 26 13 1713 2483 240306577 240307373 0.000000e+00 1083.0
7 TraesCS2A01G213800 chr2B 93.789 161 4 3 5161 5320 240308113 240308268 2.930000e-58 237.0
8 TraesCS2A01G213800 chr2B 90.625 128 12 0 5001 5128 240307593 240307720 3.010000e-38 171.0
9 TraesCS2A01G213800 chr6B 98.189 1049 13 4 3969 5013 54100285 54101331 0.000000e+00 1827.0
10 TraesCS2A01G213800 chr6B 96.111 360 3 2 3351 3710 54099938 54100286 1.520000e-160 577.0
11 TraesCS2A01G213800 chr6B 97.050 339 8 1 2733 3069 54099535 54099873 2.540000e-158 569.0
12 TraesCS2A01G213800 chr6B 94.118 289 15 2 3708 3996 566599072 566598786 7.470000e-119 438.0
13 TraesCS2A01G213800 chr6B 82.274 299 38 11 2725 3014 612272518 612272810 1.750000e-60 244.0
14 TraesCS2A01G213800 chr6B 85.714 168 24 0 4841 5008 459600504 459600671 1.800000e-40 178.0
15 TraesCS2A01G213800 chr4B 97.987 1043 18 2 3969 5008 455028947 455029989 0.000000e+00 1807.0
16 TraesCS2A01G213800 chr4B 96.399 361 4 5 3351 3710 455028596 455028948 2.520000e-163 586.0
17 TraesCS2A01G213800 chr4B 97.361 341 8 1 2730 3069 455028192 455028532 4.220000e-161 579.0
18 TraesCS2A01G213800 chr4B 95.668 277 11 1 3695 3971 228594295 228594570 1.610000e-120 444.0
19 TraesCS2A01G213800 chr4B 84.354 294 33 13 2729 3014 413819115 413819403 6.200000e-70 276.0
20 TraesCS2A01G213800 chr2D 90.971 1329 55 24 5001 6279 186959188 186960501 0.000000e+00 1729.0
21 TraesCS2A01G213800 chr2D 86.631 935 65 23 1835 2733 186958294 186959204 0.000000e+00 979.0
22 TraesCS2A01G213800 chr2D 87.925 795 40 24 730 1505 186957363 186958120 0.000000e+00 885.0
23 TraesCS2A01G213800 chr2D 89.278 485 41 8 1 479 186953556 186954035 1.170000e-166 597.0
24 TraesCS2A01G213800 chr2D 89.453 256 19 2 478 733 186954155 186954402 3.650000e-82 316.0
25 TraesCS2A01G213800 chr2D 92.308 130 6 4 3969 4096 175750971 175751098 1.390000e-41 182.0
26 TraesCS2A01G213800 chr2D 85.621 153 22 0 4856 5008 353064202 353064050 1.810000e-35 161.0
27 TraesCS2A01G213800 chr5D 91.160 1052 72 15 3969 5010 450518962 450517922 0.000000e+00 1408.0
28 TraesCS2A01G213800 chr5D 92.935 368 15 10 3351 3710 450519325 450518961 5.580000e-145 525.0
29 TraesCS2A01G213800 chr5D 90.278 360 19 12 3351 3704 496012725 496013074 2.060000e-124 457.0
30 TraesCS2A01G213800 chr5D 89.444 360 22 10 3351 3704 482170855 482171204 2.080000e-119 440.0
31 TraesCS2A01G213800 chr5D 89.630 135 14 0 3969 4103 482171209 482171343 8.370000e-39 172.0
32 TraesCS2A01G213800 chr7B 89.943 1044 60 16 3969 5009 543000093 542999092 0.000000e+00 1304.0
33 TraesCS2A01G213800 chr7B 91.643 694 43 6 3969 4655 541952684 541951999 0.000000e+00 946.0
34 TraesCS2A01G213800 chr7B 91.484 364 18 10 3351 3710 543000446 543000092 7.320000e-134 488.0
35 TraesCS2A01G213800 chr7B 91.209 364 15 8 3351 3710 541953033 541952683 4.400000e-131 479.0
36 TraesCS2A01G213800 chr7B 91.617 334 21 3 2742 3069 541953427 541953095 7.420000e-124 455.0
37 TraesCS2A01G213800 chr7B 95.324 278 13 0 3701 3978 488192113 488192390 5.780000e-120 442.0
38 TraesCS2A01G213800 chr7B 89.914 347 24 6 2733 3069 543001385 543001040 2.690000e-118 436.0
39 TraesCS2A01G213800 chr7B 89.474 323 24 5 2733 3046 542901157 542900836 3.530000e-107 399.0
40 TraesCS2A01G213800 chr7B 92.164 268 16 3 4741 5006 541951303 541951039 2.140000e-99 374.0
41 TraesCS2A01G213800 chr7B 87.143 70 6 2 1765 1834 48247132 48247198 6.750000e-10 76.8
42 TraesCS2A01G213800 chr7B 78.992 119 13 11 1719 1834 723128978 723129087 3.140000e-08 71.3
43 TraesCS2A01G213800 chr7D 92.593 594 40 4 3969 4560 160559971 160559380 0.000000e+00 850.0
44 TraesCS2A01G213800 chr7D 91.057 369 18 12 3351 3710 160560332 160559970 9.460000e-133 484.0
45 TraesCS2A01G213800 chr7D 87.949 390 29 12 4629 5009 160559350 160558970 1.610000e-120 444.0
46 TraesCS2A01G213800 chr7D 86.777 242 24 6 2734 2969 633938830 633938591 4.830000e-66 263.0
47 TraesCS2A01G213800 chr7D 88.961 154 17 0 4856 5009 104136313 104136160 2.310000e-44 191.0
48 TraesCS2A01G213800 chr7D 87.135 171 16 6 4841 5008 633938096 633937929 8.310000e-44 189.0
49 TraesCS2A01G213800 chr7D 88.312 154 18 0 4856 5009 19575466 19575313 1.070000e-42 185.0
50 TraesCS2A01G213800 chr7D 88.235 153 18 0 4856 5008 472095624 472095472 3.870000e-42 183.0
51 TraesCS2A01G213800 chr3A 99.242 264 2 0 3708 3971 336936170 336936433 1.580000e-130 477.0
52 TraesCS2A01G213800 chr3B 84.232 501 57 15 4128 4618 448430080 448429592 9.530000e-128 468.0
53 TraesCS2A01G213800 chr3B 95.390 282 11 2 3689 3970 780692539 780692260 1.240000e-121 448.0
54 TraesCS2A01G213800 chr3B 84.211 285 38 4 4726 5008 448429582 448429303 2.880000e-68 270.0
55 TraesCS2A01G213800 chr3B 82.456 285 40 9 2734 3012 681755022 681754742 2.260000e-59 241.0
56 TraesCS2A01G213800 chrUn 96.727 275 6 3 3708 3979 12443703 12443977 7.420000e-124 455.0
57 TraesCS2A01G213800 chr7A 97.037 270 8 0 3705 3974 496903128 496902859 7.420000e-124 455.0
58 TraesCS2A01G213800 chr7A 85.333 75 8 3 1765 1839 17833857 17833786 2.430000e-09 75.0
59 TraesCS2A01G213800 chr5B 95.668 277 12 0 3696 3972 517413615 517413891 4.470000e-121 446.0
60 TraesCS2A01G213800 chr6D 88.859 368 23 13 3351 3710 364856076 364855719 2.690000e-118 436.0
61 TraesCS2A01G213800 chr6D 90.511 137 7 5 3969 4103 364855720 364855588 6.470000e-40 176.0
62 TraesCS2A01G213800 chr4D 87.135 171 16 6 4842 5010 280174355 280174189 8.310000e-44 189.0
63 TraesCS2A01G213800 chr4D 88.095 126 9 5 4842 4964 302348037 302348159 1.820000e-30 145.0
64 TraesCS2A01G213800 chr4D 93.421 76 4 1 4097 4172 445379239 445379165 1.850000e-20 111.0
65 TraesCS2A01G213800 chr1D 84.375 160 17 2 4853 5009 80846813 80846967 3.920000e-32 150.0
66 TraesCS2A01G213800 chr1D 87.931 116 14 0 4893 5008 41994578 41994463 3.050000e-28 137.0
67 TraesCS2A01G213800 chr1D 87.143 70 6 3 1765 1834 326785827 326785893 6.750000e-10 76.8
68 TraesCS2A01G213800 chr3D 84.722 72 9 2 1765 1836 471085110 471085041 3.140000e-08 71.3
69 TraesCS2A01G213800 chr3D 79.130 115 15 8 1722 1834 511566509 511566402 3.140000e-08 71.3
70 TraesCS2A01G213800 chr1B 78.151 119 14 11 1719 1834 429766484 429766593 1.460000e-06 65.8


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS2A01G213800 chr2A 199576510 199582788 6278 False 5538.500000 5668 100.000000 1 6279 2 chr2A.!!$F3 6278
1 TraesCS2A01G213800 chr2B 240305090 240309291 4201 False 979.800000 1980 91.978800 1 6279 5 chr2B.!!$F1 6278
2 TraesCS2A01G213800 chr6B 54099535 54101331 1796 False 991.000000 1827 97.116667 2733 5013 3 chr6B.!!$F3 2280
3 TraesCS2A01G213800 chr4B 455028192 455029989 1797 False 990.666667 1807 97.249000 2730 5008 3 chr4B.!!$F3 2278
4 TraesCS2A01G213800 chr2D 186953556 186960501 6945 False 901.200000 1729 88.851600 1 6279 5 chr2D.!!$F2 6278
5 TraesCS2A01G213800 chr5D 450517922 450519325 1403 True 966.500000 1408 92.047500 3351 5010 2 chr5D.!!$R1 1659
6 TraesCS2A01G213800 chr7B 542999092 543001385 2293 True 742.666667 1304 90.447000 2733 5009 3 chr7B.!!$R3 2276
7 TraesCS2A01G213800 chr7B 541951039 541953427 2388 True 563.500000 946 91.658250 2742 5006 4 chr7B.!!$R2 2264
8 TraesCS2A01G213800 chr7D 160558970 160560332 1362 True 592.666667 850 90.533000 3351 5009 3 chr7D.!!$R4 1658
9 TraesCS2A01G213800 chr7D 633937929 633938830 901 True 226.000000 263 86.956000 2734 5008 2 chr7D.!!$R5 2274
10 TraesCS2A01G213800 chr3B 448429303 448430080 777 True 369.000000 468 84.221500 4128 5008 2 chr3B.!!$R3 880

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
995 4102 0.109365 CGCCAGCATAGGAGAGATCG 60.109 60.0 0.00 0.0 0.00 3.69 F
1463 4585 0.036306 CGTTGACCTTGGGTTAGCCT 59.964 55.0 1.07 0.0 35.25 4.58 F
1515 4637 0.108520 TGGAACGCCGTTGGATAGAC 60.109 55.0 7.45 0.0 36.79 2.59 F
2709 5935 0.524414 TATGTGTGGGACGAGACGTG 59.476 55.0 0.00 0.0 41.37 4.49 F
2905 6132 0.683973 AGGACTCACACCTGCTCAAG 59.316 55.0 0.00 0.0 36.30 3.02 F
3722 7310 0.751452 GGTCATACTCCCTCCGTTCC 59.249 60.0 0.00 0.0 0.00 3.62 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2700 5926 0.104304 AAAGCAAGACCACGTCTCGT 59.896 50.000 0.00 0.0 42.59 4.18 R
2848 6074 1.905843 CGGCCATCCAAACAACCCA 60.906 57.895 2.24 0.0 0.00 4.51 R
3431 6999 7.176690 AGGAAAAGAAACAGAAACAGAAACAGA 59.823 33.333 0.00 0.0 0.00 3.41 R
3949 7537 2.544844 ACTCCCTCCGTTCCTCAATA 57.455 50.000 0.00 0.0 0.00 1.90 R
3955 7543 2.762327 TGTGTAATACTCCCTCCGTTCC 59.238 50.000 0.00 0.0 0.00 3.62 R
5560 10222 0.110823 CGTTTTCCGAAACTGGCTCG 60.111 55.000 0.00 0.0 42.35 5.03 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
49 50 4.451900 ACTGTGAAACACAAAGGTAGAGG 58.548 43.478 6.08 0.00 45.67 3.69
98 100 3.451141 TGTTGATTTGTTTGCCCAGAC 57.549 42.857 0.00 0.00 0.00 3.51
189 192 5.172687 TCCATACCAGAATTGTTAGCACA 57.827 39.130 0.00 0.00 0.00 4.57
359 365 8.654215 CGTTAGGAACTTAATTAGGTGTTTCTC 58.346 37.037 0.37 0.00 41.75 2.87
385 391 2.159099 TGGAATAGACCAGTAGCGCAAG 60.159 50.000 11.47 0.00 34.77 4.01
421 427 8.514136 TTACTTACCGCATTTGAAAAATTCAG 57.486 30.769 0.00 0.00 41.38 3.02
432 438 9.059260 CATTTGAAAAATTCAGAAGGAAATGGT 57.941 29.630 0.00 0.00 41.38 3.55
525 653 8.208718 TGTTGGCTTTATCAGATATAACACAC 57.791 34.615 0.00 0.00 0.00 3.82
526 654 7.011016 TGTTGGCTTTATCAGATATAACACACG 59.989 37.037 0.00 0.00 0.00 4.49
544 672 0.666913 CGGTACCACCCATAGTCTCG 59.333 60.000 13.54 0.00 33.75 4.04
723 853 4.900684 TGCAACTAGTGTAGTTTGGCATA 58.099 39.130 0.00 0.00 46.27 3.14
739 3833 5.137412 TGGCATAAGGGGTTAGCTATTTT 57.863 39.130 0.00 0.00 0.00 1.82
806 3906 2.100252 CCTCGGGCGAAAGTAGACAATA 59.900 50.000 0.00 0.00 0.00 1.90
849 3949 6.439375 AGGAACAAGGTTAGTTTGGTCTTTTT 59.561 34.615 3.40 0.00 41.05 1.94
850 3950 6.755141 GGAACAAGGTTAGTTTGGTCTTTTTC 59.245 38.462 3.40 0.00 41.05 2.29
851 3951 7.363530 GGAACAAGGTTAGTTTGGTCTTTTTCT 60.364 37.037 3.40 0.00 41.05 2.52
852 3952 6.863275 ACAAGGTTAGTTTGGTCTTTTTCTG 58.137 36.000 0.00 0.00 0.00 3.02
853 3953 6.436218 ACAAGGTTAGTTTGGTCTTTTTCTGT 59.564 34.615 0.00 0.00 0.00 3.41
854 3954 7.039293 ACAAGGTTAGTTTGGTCTTTTTCTGTT 60.039 33.333 0.00 0.00 0.00 3.16
855 3955 8.463607 CAAGGTTAGTTTGGTCTTTTTCTGTTA 58.536 33.333 0.00 0.00 0.00 2.41
856 3956 7.993101 AGGTTAGTTTGGTCTTTTTCTGTTAC 58.007 34.615 0.00 0.00 0.00 2.50
982 4089 1.756375 CTCACGTTCATAGCGCCAGC 61.756 60.000 2.29 0.00 45.58 4.85
992 4099 3.133014 GCGCCAGCATAGGAGAGA 58.867 61.111 0.00 0.00 44.35 3.10
993 4100 1.670590 GCGCCAGCATAGGAGAGAT 59.329 57.895 0.00 0.00 44.35 2.75
994 4101 0.389687 GCGCCAGCATAGGAGAGATC 60.390 60.000 0.00 0.00 44.35 2.75
995 4102 0.109365 CGCCAGCATAGGAGAGATCG 60.109 60.000 0.00 0.00 0.00 3.69
1044 4151 2.506217 GCTCGCCGAACATCGTCA 60.506 61.111 0.00 0.00 38.40 4.35
1313 4423 2.805353 CTGCGACGACTTCCGGTG 60.805 66.667 0.00 0.00 43.93 4.94
1462 4584 1.583495 GCGTTGACCTTGGGTTAGCC 61.583 60.000 0.00 0.00 35.25 3.93
1463 4585 0.036306 CGTTGACCTTGGGTTAGCCT 59.964 55.000 1.07 0.00 35.25 4.58
1511 4633 2.746277 GCTGGAACGCCGTTGGAT 60.746 61.111 7.45 0.00 36.79 3.41
1512 4634 1.448893 GCTGGAACGCCGTTGGATA 60.449 57.895 7.45 0.00 36.79 2.59
1514 4636 0.174845 CTGGAACGCCGTTGGATAGA 59.825 55.000 7.45 0.00 36.79 1.98
1515 4637 0.108520 TGGAACGCCGTTGGATAGAC 60.109 55.000 7.45 0.00 36.79 2.59
1516 4638 0.808847 GGAACGCCGTTGGATAGACC 60.809 60.000 7.45 0.00 39.54 3.85
1526 4648 1.262417 TGGATAGACCAGACGTTGCA 58.738 50.000 0.00 0.00 44.64 4.08
1527 4649 1.831106 TGGATAGACCAGACGTTGCAT 59.169 47.619 0.00 0.00 44.64 3.96
1528 4650 2.205074 GGATAGACCAGACGTTGCATG 58.795 52.381 0.00 0.00 38.79 4.06
1529 4651 2.205074 GATAGACCAGACGTTGCATGG 58.795 52.381 1.63 1.63 40.10 3.66
1531 4653 4.379174 ACCAGACGTTGCATGGTC 57.621 55.556 3.00 6.35 43.94 4.02
1532 4654 1.667830 ACCAGACGTTGCATGGTCG 60.668 57.895 3.00 1.83 43.94 4.79
1533 4655 2.390599 CCAGACGTTGCATGGTCGG 61.391 63.158 10.82 10.25 38.20 4.79
1534 4656 2.742372 AGACGTTGCATGGTCGGC 60.742 61.111 10.82 5.64 38.20 5.54
1535 4657 2.742372 GACGTTGCATGGTCGGCT 60.742 61.111 0.00 0.00 0.00 5.52
1536 4658 3.027170 GACGTTGCATGGTCGGCTG 62.027 63.158 0.00 0.00 0.00 4.85
1537 4659 4.465512 CGTTGCATGGTCGGCTGC 62.466 66.667 0.00 0.00 38.87 5.25
1538 4660 3.364441 GTTGCATGGTCGGCTGCA 61.364 61.111 0.00 0.00 46.08 4.41
1542 4664 3.129502 CATGGTCGGCTGCAGGTG 61.130 66.667 17.12 0.00 0.00 4.00
1543 4665 4.415150 ATGGTCGGCTGCAGGTGG 62.415 66.667 17.12 0.00 0.00 4.61
1551 4673 4.742201 CTGCAGGTGGACCCGTCG 62.742 72.222 5.57 0.00 38.74 5.12
1554 4676 2.677524 CAGGTGGACCCGTCGGTA 60.678 66.667 11.06 0.00 44.88 4.02
1563 4685 1.219664 CCCGTCGGTAAGCCATGAA 59.780 57.895 11.06 0.00 34.09 2.57
1564 4686 0.810031 CCCGTCGGTAAGCCATGAAG 60.810 60.000 11.06 0.00 34.09 3.02
1578 4700 1.339610 CATGAAGGCGTGGTTCCAAAA 59.660 47.619 0.00 0.00 0.00 2.44
1579 4701 0.741915 TGAAGGCGTGGTTCCAAAAC 59.258 50.000 0.00 0.00 34.46 2.43
1588 4710 4.260172 GCGTGGTTCCAAAACATTTCAAAG 60.260 41.667 0.00 0.00 37.10 2.77
1589 4711 4.867608 CGTGGTTCCAAAACATTTCAAAGT 59.132 37.500 0.00 0.00 37.10 2.66
1598 4720 8.447053 TCCAAAACATTTCAAAGTTGTTTTAGC 58.553 29.630 12.23 0.00 46.33 3.09
1599 4721 7.696035 CCAAAACATTTCAAAGTTGTTTTAGCC 59.304 33.333 12.23 0.00 46.33 3.93
1608 4730 5.668558 AAGTTGTTTTAGCCGTGAGTAAG 57.331 39.130 0.00 0.00 0.00 2.34
1611 4733 5.235831 AGTTGTTTTAGCCGTGAGTAAGTTC 59.764 40.000 0.00 0.00 0.00 3.01
1613 4735 3.323751 TTTAGCCGTGAGTAAGTTCCC 57.676 47.619 0.00 0.00 0.00 3.97
1614 4736 1.927487 TAGCCGTGAGTAAGTTCCCA 58.073 50.000 0.00 0.00 0.00 4.37
1629 4751 6.544928 AAGTTCCCAACATTTCAGTTCTTT 57.455 33.333 0.00 0.00 0.00 2.52
1634 4756 3.070015 CCAACATTTCAGTTCTTTGGGCT 59.930 43.478 0.00 0.00 31.60 5.19
1635 4757 4.301628 CAACATTTCAGTTCTTTGGGCTC 58.698 43.478 0.00 0.00 0.00 4.70
1640 4762 5.675684 TTTCAGTTCTTTGGGCTCTTTTT 57.324 34.783 0.00 0.00 0.00 1.94
1658 4785 3.417069 TTTTCGAGGCTCCTGATTTCA 57.583 42.857 9.32 0.00 0.00 2.69
1664 4791 4.020573 TCGAGGCTCCTGATTTCAGTTTAA 60.021 41.667 9.32 0.00 42.27 1.52
1668 4795 4.522789 GGCTCCTGATTTCAGTTTAACCAA 59.477 41.667 6.81 0.00 42.27 3.67
1669 4796 5.335976 GGCTCCTGATTTCAGTTTAACCAAG 60.336 44.000 6.81 0.00 42.27 3.61
1670 4797 5.473504 GCTCCTGATTTCAGTTTAACCAAGA 59.526 40.000 6.81 0.00 42.27 3.02
1671 4798 6.151817 GCTCCTGATTTCAGTTTAACCAAGAT 59.848 38.462 6.81 0.00 42.27 2.40
1672 4799 7.452880 TCCTGATTTCAGTTTAACCAAGATG 57.547 36.000 6.81 0.00 42.27 2.90
1673 4800 6.434028 TCCTGATTTCAGTTTAACCAAGATGG 59.566 38.462 6.81 0.00 42.05 3.51
1674 4801 7.219484 CTGATTTCAGTTTAACCAAGATGGT 57.781 36.000 0.00 0.00 45.09 3.55
1675 4802 7.393234 CCTGATTTCAGTTTAACCAAGATGGTA 59.607 37.037 1.84 0.00 45.61 3.25
1676 4803 8.960591 CTGATTTCAGTTTAACCAAGATGGTAT 58.039 33.333 1.84 0.00 43.66 2.73
1757 4884 5.063880 GTCCAATCTACTCACCAAAACAGT 58.936 41.667 0.00 0.00 0.00 3.55
1758 4885 5.049405 GTCCAATCTACTCACCAAAACAGTG 60.049 44.000 0.00 0.00 36.54 3.66
1778 4905 3.371591 GTGTGTCGGTACAAAGAACACAA 59.628 43.478 15.19 3.42 38.17 3.33
1828 4956 1.467035 CGTAGACCACCTAGCAACGAC 60.467 57.143 0.00 0.00 0.00 4.34
1865 4993 5.913137 ACCAGTCATTTGAACAAAACTGA 57.087 34.783 22.63 13.27 39.61 3.41
1897 5026 7.180322 TGAATTATATTTTGGCTTTGGCTCA 57.820 32.000 0.00 0.00 38.73 4.26
1911 5046 1.353103 GCTCAATCGAACCCATGCG 59.647 57.895 0.00 0.00 0.00 4.73
1931 5068 3.126858 GCGTTGCTGAGATATTTTGACCA 59.873 43.478 0.00 0.00 0.00 4.02
2017 5155 7.591006 TTATGAACAACGAGAAACCTATGTC 57.409 36.000 0.00 0.00 0.00 3.06
2117 5255 6.092122 TCCATATCGTAAGCAGTTTTGTCAAG 59.908 38.462 0.00 0.00 37.18 3.02
2203 5353 0.608308 GGTTAGTTGGTGGGTCAGCC 60.608 60.000 0.00 0.00 0.00 4.85
2253 5403 2.766313 CACAAAGTTGACTCGGGATGA 58.234 47.619 0.00 0.00 0.00 2.92
2456 5649 6.020281 CAGTCCGAAATCTTATCTGTTCGAAG 60.020 42.308 0.00 0.00 44.24 3.79
2483 5707 8.579682 AAATTGCACTAACAAAGTCAAGAATC 57.420 30.769 0.00 0.00 35.76 2.52
2513 5737 8.871125 AGTTATACTAGTGGGAATTATGTCAGG 58.129 37.037 5.39 0.00 0.00 3.86
2531 5755 6.227522 TGTCAGGATTCGATTGAAACTGTTA 58.772 36.000 21.16 13.35 40.83 2.41
2539 5763 8.964476 ATTCGATTGAAACTGTTATCTGGTAT 57.036 30.769 0.00 0.00 37.71 2.73
2554 5778 5.781210 TCTGGTATACATCAGCAGAAGAG 57.219 43.478 5.01 0.00 44.98 2.85
2557 5781 4.202192 TGGTATACATCAGCAGAAGAGCAG 60.202 45.833 5.01 0.00 36.85 4.24
2560 5784 0.727970 CATCAGCAGAAGAGCAGTGC 59.272 55.000 7.13 7.13 36.85 4.40
2562 5786 1.260544 TCAGCAGAAGAGCAGTGCTA 58.739 50.000 19.77 0.00 45.82 3.49
2563 5787 1.829849 TCAGCAGAAGAGCAGTGCTAT 59.170 47.619 19.77 13.17 45.82 2.97
2564 5788 3.026694 TCAGCAGAAGAGCAGTGCTATA 58.973 45.455 19.77 0.00 45.82 1.31
2565 5789 3.640498 TCAGCAGAAGAGCAGTGCTATAT 59.360 43.478 19.77 7.08 45.82 0.86
2569 5793 4.741837 GCAGAAGAGCAGTGCTATATCCAA 60.742 45.833 19.77 0.00 39.88 3.53
2663 5889 4.289342 CATCGATCTGTAGACAAGCTCAG 58.711 47.826 0.00 0.00 0.00 3.35
2684 5910 2.817839 GCAGTCACCACCCCTATTGTTT 60.818 50.000 0.00 0.00 0.00 2.83
2685 5911 3.496331 CAGTCACCACCCCTATTGTTTT 58.504 45.455 0.00 0.00 0.00 2.43
2709 5935 0.524414 TATGTGTGGGACGAGACGTG 59.476 55.000 0.00 0.00 41.37 4.49
2710 5936 2.049433 GTGTGGGACGAGACGTGG 60.049 66.667 0.00 0.00 41.37 4.94
2848 6074 3.967332 TCCGGTCTAAATCGAACCTTT 57.033 42.857 0.00 0.00 0.00 3.11
2905 6132 0.683973 AGGACTCACACCTGCTCAAG 59.316 55.000 0.00 0.00 36.30 3.02
3384 6951 1.669760 CTCGCAACAGCCCCGTTTA 60.670 57.895 0.00 0.00 0.00 2.01
3429 6997 3.737850 CTGCCTCTCTGTTTCTTCTGTT 58.262 45.455 0.00 0.00 0.00 3.16
3430 6998 4.133078 CTGCCTCTCTGTTTCTTCTGTTT 58.867 43.478 0.00 0.00 0.00 2.83
3431 6999 4.526970 TGCCTCTCTGTTTCTTCTGTTTT 58.473 39.130 0.00 0.00 0.00 2.43
3432 7000 4.576463 TGCCTCTCTGTTTCTTCTGTTTTC 59.424 41.667 0.00 0.00 0.00 2.29
3433 7001 4.819088 GCCTCTCTGTTTCTTCTGTTTTCT 59.181 41.667 0.00 0.00 0.00 2.52
3434 7002 5.277731 GCCTCTCTGTTTCTTCTGTTTTCTG 60.278 44.000 0.00 0.00 0.00 3.02
3716 7304 9.847224 TGAAATTTATTAAGGTCATACTCCCTC 57.153 33.333 0.00 0.00 0.00 4.30
3717 7305 9.286170 GAAATTTATTAAGGTCATACTCCCTCC 57.714 37.037 0.00 0.00 0.00 4.30
3718 7306 6.415206 TTTATTAAGGTCATACTCCCTCCG 57.585 41.667 0.00 0.00 0.00 4.63
3719 7307 3.393426 TTAAGGTCATACTCCCTCCGT 57.607 47.619 0.00 0.00 0.00 4.69
3720 7308 2.249309 AAGGTCATACTCCCTCCGTT 57.751 50.000 0.00 0.00 0.00 4.44
3721 7309 1.777941 AGGTCATACTCCCTCCGTTC 58.222 55.000 0.00 0.00 0.00 3.95
3722 7310 0.751452 GGTCATACTCCCTCCGTTCC 59.249 60.000 0.00 0.00 0.00 3.62
3723 7311 1.688627 GGTCATACTCCCTCCGTTCCT 60.689 57.143 0.00 0.00 0.00 3.36
3724 7312 2.423947 GGTCATACTCCCTCCGTTCCTA 60.424 54.545 0.00 0.00 0.00 2.94
3725 7313 3.294214 GTCATACTCCCTCCGTTCCTAA 58.706 50.000 0.00 0.00 0.00 2.69
3726 7314 3.703052 GTCATACTCCCTCCGTTCCTAAA 59.297 47.826 0.00 0.00 0.00 1.85
3727 7315 4.344390 GTCATACTCCCTCCGTTCCTAAAT 59.656 45.833 0.00 0.00 0.00 1.40
3728 7316 5.537674 GTCATACTCCCTCCGTTCCTAAATA 59.462 44.000 0.00 0.00 0.00 1.40
3729 7317 6.210984 GTCATACTCCCTCCGTTCCTAAATAT 59.789 42.308 0.00 0.00 0.00 1.28
3730 7318 7.395489 GTCATACTCCCTCCGTTCCTAAATATA 59.605 40.741 0.00 0.00 0.00 0.86
3731 7319 7.951806 TCATACTCCCTCCGTTCCTAAATATAA 59.048 37.037 0.00 0.00 0.00 0.98
3732 7320 6.667558 ACTCCCTCCGTTCCTAAATATAAG 57.332 41.667 0.00 0.00 0.00 1.73
3733 7321 5.543020 ACTCCCTCCGTTCCTAAATATAAGG 59.457 44.000 0.00 0.00 35.26 2.69
3734 7322 5.470501 TCCCTCCGTTCCTAAATATAAGGT 58.529 41.667 4.41 0.00 35.48 3.50
3735 7323 5.306160 TCCCTCCGTTCCTAAATATAAGGTG 59.694 44.000 4.41 0.00 35.48 4.00
3736 7324 5.071384 CCCTCCGTTCCTAAATATAAGGTGT 59.929 44.000 4.41 0.00 35.48 4.16
3737 7325 6.268387 CCCTCCGTTCCTAAATATAAGGTGTA 59.732 42.308 4.41 0.00 35.48 2.90
3738 7326 7.038516 CCCTCCGTTCCTAAATATAAGGTGTAT 60.039 40.741 4.41 0.00 35.48 2.29
3739 7327 8.373220 CCTCCGTTCCTAAATATAAGGTGTATT 58.627 37.037 4.41 0.00 35.48 1.89
3776 7364 7.907214 ACTCAACTATTGTCTATGTTTGACC 57.093 36.000 0.00 0.00 33.83 4.02
3777 7365 7.450074 ACTCAACTATTGTCTATGTTTGACCA 58.550 34.615 0.00 0.00 33.83 4.02
3778 7366 7.936847 ACTCAACTATTGTCTATGTTTGACCAA 59.063 33.333 0.00 0.00 33.83 3.67
3779 7367 8.094798 TCAACTATTGTCTATGTTTGACCAAC 57.905 34.615 0.00 0.00 33.83 3.77
3780 7368 7.936847 TCAACTATTGTCTATGTTTGACCAACT 59.063 33.333 0.00 0.00 36.21 3.16
3781 7369 8.567948 CAACTATTGTCTATGTTTGACCAACTT 58.432 33.333 0.00 0.00 36.21 2.66
3782 7370 8.691661 ACTATTGTCTATGTTTGACCAACTTT 57.308 30.769 0.00 0.00 36.21 2.66
3783 7371 9.787435 ACTATTGTCTATGTTTGACCAACTTTA 57.213 29.630 0.00 0.00 36.21 1.85
3787 7375 8.263940 TGTCTATGTTTGACCAACTTTATAGC 57.736 34.615 0.00 0.00 36.21 2.97
3788 7376 7.880713 TGTCTATGTTTGACCAACTTTATAGCA 59.119 33.333 0.00 0.00 36.21 3.49
3789 7377 8.726988 GTCTATGTTTGACCAACTTTATAGCAA 58.273 33.333 0.00 0.00 36.21 3.91
3790 7378 9.290988 TCTATGTTTGACCAACTTTATAGCAAA 57.709 29.630 0.00 0.00 36.21 3.68
3791 7379 9.906660 CTATGTTTGACCAACTTTATAGCAAAA 57.093 29.630 0.00 0.00 36.21 2.44
3861 7449 8.809159 AGTTCATGACGAATCTAGTGATAATG 57.191 34.615 0.00 0.00 35.63 1.90
3862 7450 8.633561 AGTTCATGACGAATCTAGTGATAATGA 58.366 33.333 0.00 0.00 35.63 2.57
3863 7451 9.416794 GTTCATGACGAATCTAGTGATAATGAT 57.583 33.333 0.00 0.00 35.63 2.45
3864 7452 9.987272 TTCATGACGAATCTAGTGATAATGATT 57.013 29.630 0.00 0.00 31.70 2.57
3865 7453 9.987272 TCATGACGAATCTAGTGATAATGATTT 57.013 29.630 0.00 0.00 31.70 2.17
3867 7455 8.593492 TGACGAATCTAGTGATAATGATTTGG 57.407 34.615 0.00 0.00 35.65 3.28
3868 7456 8.204160 TGACGAATCTAGTGATAATGATTTGGT 58.796 33.333 0.00 0.00 35.65 3.67
3869 7457 9.692749 GACGAATCTAGTGATAATGATTTGGTA 57.307 33.333 0.00 0.00 35.65 3.25
3915 7503 9.706691 TGTCTATAAACTTGGTCAAACTTAGAG 57.293 33.333 0.00 0.00 0.00 2.43
3916 7504 9.924650 GTCTATAAACTTGGTCAAACTTAGAGA 57.075 33.333 0.00 5.44 0.00 3.10
3961 7549 9.720769 AATAATACACCTTATATTGAGGAACGG 57.279 33.333 10.81 0.00 37.72 4.44
3962 7550 6.989155 ATACACCTTATATTGAGGAACGGA 57.011 37.500 10.81 0.00 37.72 4.69
3963 7551 5.277857 ACACCTTATATTGAGGAACGGAG 57.722 43.478 10.81 0.00 37.72 4.63
3964 7552 4.101119 ACACCTTATATTGAGGAACGGAGG 59.899 45.833 10.81 0.00 37.72 4.30
3965 7553 3.646637 ACCTTATATTGAGGAACGGAGGG 59.353 47.826 10.81 0.00 37.72 4.30
3966 7554 3.901844 CCTTATATTGAGGAACGGAGGGA 59.098 47.826 0.00 0.00 36.33 4.20
3967 7555 4.021016 CCTTATATTGAGGAACGGAGGGAG 60.021 50.000 0.00 0.00 36.33 4.30
3968 7556 2.544844 TATTGAGGAACGGAGGGAGT 57.455 50.000 0.00 0.00 0.00 3.85
3969 7557 2.544844 ATTGAGGAACGGAGGGAGTA 57.455 50.000 0.00 0.00 0.00 2.59
4297 7896 7.772721 TTTGCAAATTTTCAAAAACGTTCAG 57.227 28.000 12.65 0.00 30.19 3.02
4350 7949 3.176552 TGTGCATGTCCCAAAAGTTTG 57.823 42.857 0.00 0.00 37.90 2.93
4972 9210 1.094785 CAGGGTTCATTTCGCCGAAT 58.905 50.000 0.00 0.00 0.00 3.34
5010 9248 7.127405 AGGGTTTAAAGTGGACTTTTTCCTTA 58.873 34.615 9.95 0.00 46.10 2.69
5011 9249 7.287005 AGGGTTTAAAGTGGACTTTTTCCTTAG 59.713 37.037 9.95 0.00 46.10 2.18
5012 9250 7.069085 GGGTTTAAAGTGGACTTTTTCCTTAGT 59.931 37.037 9.95 0.00 46.10 2.24
5013 9251 8.133627 GGTTTAAAGTGGACTTTTTCCTTAGTC 58.866 37.037 9.95 0.00 46.10 2.59
5014 9252 8.680001 GTTTAAAGTGGACTTTTTCCTTAGTCA 58.320 33.333 9.95 0.00 46.10 3.41
5015 9253 8.810990 TTAAAGTGGACTTTTTCCTTAGTCAA 57.189 30.769 9.95 0.00 46.10 3.18
5016 9254 7.712204 AAAGTGGACTTTTTCCTTAGTCAAA 57.288 32.000 0.00 0.00 46.10 2.69
5017 9255 6.944234 AGTGGACTTTTTCCTTAGTCAAAG 57.056 37.500 0.00 0.00 46.10 2.77
5072 9310 2.532256 CCTGATGCGTGCTGCTAGC 61.532 63.158 8.10 8.10 46.63 3.42
5110 9354 1.129917 GGGGAGGGGTCTAGTTTAGC 58.870 60.000 0.00 0.00 0.00 3.09
5128 9372 2.496111 AGCGGTACAAAAATCACGGAA 58.504 42.857 0.00 0.00 0.00 4.30
5129 9373 2.879646 AGCGGTACAAAAATCACGGAAA 59.120 40.909 0.00 0.00 0.00 3.13
5130 9374 3.504520 AGCGGTACAAAAATCACGGAAAT 59.495 39.130 0.00 0.00 0.00 2.17
5131 9375 4.022676 AGCGGTACAAAAATCACGGAAATT 60.023 37.500 0.00 0.00 0.00 1.82
5134 9378 5.915758 CGGTACAAAAATCACGGAAATTGAA 59.084 36.000 0.00 0.00 0.00 2.69
5153 9738 8.673626 AATTGAATGCTTCATGTAAAGTTACG 57.326 30.769 0.00 0.00 39.84 3.18
5155 9740 6.827641 TGAATGCTTCATGTAAAGTTACGAC 58.172 36.000 0.00 0.00 33.95 4.34
5158 9743 5.294356 TGCTTCATGTAAAGTTACGACTGT 58.706 37.500 0.00 0.00 35.91 3.55
5159 9744 5.176774 TGCTTCATGTAAAGTTACGACTGTG 59.823 40.000 0.00 0.00 35.91 3.66
5160 9745 5.585500 TTCATGTAAAGTTACGACTGTGC 57.415 39.130 0.00 0.00 35.91 4.57
5162 9747 4.684242 TCATGTAAAGTTACGACTGTGCTG 59.316 41.667 0.00 0.00 35.91 4.41
5165 9750 2.169832 AAGTTACGACTGTGCTGCAT 57.830 45.000 5.27 0.00 35.91 3.96
5166 9751 2.169832 AGTTACGACTGTGCTGCATT 57.830 45.000 5.27 0.00 33.99 3.56
5167 9752 2.494059 AGTTACGACTGTGCTGCATTT 58.506 42.857 5.27 0.00 33.99 2.32
5168 9753 2.480419 AGTTACGACTGTGCTGCATTTC 59.520 45.455 5.27 1.78 33.99 2.17
5172 9757 1.438651 GACTGTGCTGCATTTCGGTA 58.561 50.000 5.27 0.00 0.00 4.02
5181 9785 3.009723 CTGCATTTCGGTATCCTTGTGT 58.990 45.455 0.00 0.00 0.00 3.72
5183 9787 3.006940 GCATTTCGGTATCCTTGTGTCA 58.993 45.455 0.00 0.00 0.00 3.58
5201 9805 4.452455 GTGTCACTAAAACTGACCCAGATG 59.548 45.833 0.45 0.00 37.79 2.90
5364 10017 2.167487 GTCTGACCATGAACCCTCTCTC 59.833 54.545 0.00 0.00 0.00 3.20
5538 10200 2.408835 GCATGATTTGGTCGGCCG 59.591 61.111 22.12 22.12 37.67 6.13
5560 10222 4.473199 GGGTTCGACAAAAGCAATACTTC 58.527 43.478 0.00 0.00 37.75 3.01
5578 10240 1.223187 TCGAGCCAGTTTCGGAAAAC 58.777 50.000 4.46 0.32 44.24 2.43
5596 10272 2.365408 ACGACGGAGAAATCCAACTC 57.635 50.000 0.00 0.00 0.00 3.01
5638 10314 2.704464 TCATCCCTGTGATCAGCAAG 57.296 50.000 0.00 0.00 40.09 4.01
5645 10321 3.118482 CCCTGTGATCAGCAAGATACAGT 60.118 47.826 0.00 0.00 40.09 3.55
5654 10330 3.947196 CAGCAAGATACAGTGGGCAAATA 59.053 43.478 0.00 0.00 0.00 1.40
5768 10467 2.200373 ACACCCTAATCTGGCAACAC 57.800 50.000 0.00 0.00 46.17 3.32
5915 10614 6.707440 TCTCATCTCCTGTTATCAAGAGAC 57.293 41.667 4.57 0.00 41.90 3.36
6045 10744 4.256920 AGGCTGTAATGTAAAGCAGTGAG 58.743 43.478 0.00 0.00 38.73 3.51
6159 10858 3.244665 TGTGAAGATCCAGAGTGCAATGT 60.245 43.478 0.00 0.00 0.00 2.71
6168 10867 0.951558 GAGTGCAATGTCCCGTTGTT 59.048 50.000 0.00 0.00 33.39 2.83
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
18 19 2.675844 TGTGTTTCACAGTTTCTCCACG 59.324 45.455 0.00 0.00 39.62 4.94
19 20 4.695217 TTGTGTTTCACAGTTTCTCCAC 57.305 40.909 2.93 0.00 45.39 4.02
49 50 5.164233 GCATACCAGAAAGAAAGAAAAGGC 58.836 41.667 0.00 0.00 0.00 4.35
98 100 5.461407 AGATCGCAGCAATATATAAGCATCG 59.539 40.000 11.36 12.29 0.00 3.84
189 192 8.519799 TTTCACTTTAGAAAGATTGACCTTGT 57.480 30.769 8.97 0.00 39.31 3.16
359 365 3.736252 CGCTACTGGTCTATTCCAAATCG 59.264 47.826 0.00 0.00 37.01 3.34
385 391 9.807386 CAAATGCGGTAAGTAAATATAGTTAGC 57.193 33.333 0.00 0.00 40.00 3.09
402 408 4.990426 CCTTCTGAATTTTTCAAATGCGGT 59.010 37.500 0.00 0.00 39.58 5.68
404 410 6.768029 TTCCTTCTGAATTTTTCAAATGCG 57.232 33.333 0.00 0.00 39.58 4.73
516 644 2.533916 TGGGTGGTACCGTGTGTTATA 58.466 47.619 7.57 0.00 39.83 0.98
517 645 1.350071 TGGGTGGTACCGTGTGTTAT 58.650 50.000 7.57 0.00 39.83 1.89
518 646 1.350071 ATGGGTGGTACCGTGTGTTA 58.650 50.000 7.57 0.00 39.83 2.41
523 651 1.407979 GAGACTATGGGTGGTACCGTG 59.592 57.143 7.57 0.00 39.83 4.94
525 653 0.666913 CGAGACTATGGGTGGTACCG 59.333 60.000 7.57 0.00 39.83 4.02
526 654 2.062971 TCGAGACTATGGGTGGTACC 57.937 55.000 4.43 4.43 37.60 3.34
572 702 0.179936 TCCACATGCGCATCATACCA 59.820 50.000 22.51 0.00 33.19 3.25
643 773 9.877178 TTTTCTCTTAGCAACAAATACCAAAAA 57.123 25.926 0.00 0.00 0.00 1.94
647 777 8.736244 GGTATTTTCTCTTAGCAACAAATACCA 58.264 33.333 19.72 0.00 46.92 3.25
663 793 4.809673 CAAGGGCACTTTGGTATTTTCTC 58.190 43.478 0.00 0.00 33.81 2.87
723 853 8.730093 TTCCTTTTTAAAATAGCTAACCCCTT 57.270 30.769 0.55 0.00 0.00 3.95
789 3889 7.907214 ATTCATATATTGTCTACTTTCGCCC 57.093 36.000 0.00 0.00 0.00 6.13
806 3906 3.845178 TCCTCGCGCGATTTATTCATAT 58.155 40.909 34.86 0.00 0.00 1.78
849 3949 7.309012 CCACTTGTACTAGTTGCTAGTAACAGA 60.309 40.741 23.27 11.28 46.73 3.41
850 3950 6.807230 CCACTTGTACTAGTTGCTAGTAACAG 59.193 42.308 23.27 19.08 46.73 3.16
851 3951 6.266103 ACCACTTGTACTAGTTGCTAGTAACA 59.734 38.462 23.27 10.15 46.73 2.41
852 3952 6.585322 CACCACTTGTACTAGTTGCTAGTAAC 59.415 42.308 15.15 15.15 46.73 2.50
853 3953 6.684686 CACCACTTGTACTAGTTGCTAGTAA 58.315 40.000 15.13 4.99 46.73 2.24
854 3954 5.336213 GCACCACTTGTACTAGTTGCTAGTA 60.336 44.000 20.10 10.86 44.35 1.82
856 3956 3.927142 GCACCACTTGTACTAGTTGCTAG 59.073 47.826 20.10 4.02 39.72 3.42
923 4030 0.250295 CACCACGGAGGCTTTCTCAA 60.250 55.000 0.00 0.00 44.19 3.02
982 4089 5.730289 GCTTCATCGATCGATCTCTCCTATG 60.730 48.000 27.20 14.62 31.62 2.23
983 4090 4.335315 GCTTCATCGATCGATCTCTCCTAT 59.665 45.833 27.20 1.58 31.62 2.57
984 4091 3.687212 GCTTCATCGATCGATCTCTCCTA 59.313 47.826 27.20 7.24 31.62 2.94
986 4093 2.487762 AGCTTCATCGATCGATCTCTCC 59.512 50.000 27.20 14.29 31.62 3.71
987 4094 3.058293 ACAGCTTCATCGATCGATCTCTC 60.058 47.826 27.20 16.15 31.62 3.20
991 4098 2.403368 CGAACAGCTTCATCGATCGATC 59.597 50.000 27.20 15.68 38.82 3.69
992 4099 2.389059 CGAACAGCTTCATCGATCGAT 58.611 47.619 24.60 24.60 38.82 3.59
993 4100 1.827578 CGAACAGCTTCATCGATCGA 58.172 50.000 21.86 21.86 38.82 3.59
994 4101 0.228238 GCGAACAGCTTCATCGATCG 59.772 55.000 9.36 9.36 44.04 3.69
995 4102 0.228238 CGCGAACAGCTTCATCGATC 59.772 55.000 14.73 0.14 45.59 3.69
1298 4408 2.504244 CTCACCGGAAGTCGTCGC 60.504 66.667 9.46 0.00 37.11 5.19
1387 4497 2.511600 CCGGATCCAACGGCTGTC 60.512 66.667 13.41 0.00 45.34 3.51
1440 4550 0.535553 TAACCCAAGGTCAACGCACC 60.536 55.000 0.00 0.00 33.12 5.01
1501 4623 0.527817 GTCTGGTCTATCCAACGGCG 60.528 60.000 4.80 4.80 46.59 6.46
1502 4624 0.527817 CGTCTGGTCTATCCAACGGC 60.528 60.000 10.96 0.00 46.59 5.68
1504 4626 2.259618 CAACGTCTGGTCTATCCAACG 58.740 52.381 14.62 14.62 46.59 4.10
1506 4628 1.621317 TGCAACGTCTGGTCTATCCAA 59.379 47.619 0.00 0.00 46.59 3.53
1507 4629 1.262417 TGCAACGTCTGGTCTATCCA 58.738 50.000 0.00 0.00 45.01 3.41
1508 4630 2.205074 CATGCAACGTCTGGTCTATCC 58.795 52.381 0.00 0.00 0.00 2.59
1509 4631 2.205074 CCATGCAACGTCTGGTCTATC 58.795 52.381 0.00 0.00 0.00 2.08
1510 4632 1.555075 ACCATGCAACGTCTGGTCTAT 59.445 47.619 3.00 0.00 38.99 1.98
1511 4633 0.973632 ACCATGCAACGTCTGGTCTA 59.026 50.000 3.00 0.00 38.99 2.59
1512 4634 1.754745 ACCATGCAACGTCTGGTCT 59.245 52.632 3.00 0.00 38.99 3.85
1514 4636 1.667830 CGACCATGCAACGTCTGGT 60.668 57.895 8.67 8.67 45.80 4.00
1515 4637 2.390599 CCGACCATGCAACGTCTGG 61.391 63.158 12.98 8.13 36.09 3.86
1516 4638 3.027170 GCCGACCATGCAACGTCTG 62.027 63.158 12.98 8.65 0.00 3.51
1517 4639 2.742372 GCCGACCATGCAACGTCT 60.742 61.111 12.98 0.00 0.00 4.18
1518 4640 2.742372 AGCCGACCATGCAACGTC 60.742 61.111 6.48 6.48 0.00 4.34
1519 4641 3.049674 CAGCCGACCATGCAACGT 61.050 61.111 0.00 0.00 0.00 3.99
1520 4642 4.465512 GCAGCCGACCATGCAACG 62.466 66.667 0.00 0.00 42.11 4.10
1525 4647 3.129502 CACCTGCAGCCGACCATG 61.130 66.667 8.66 0.00 0.00 3.66
1526 4648 4.415150 CCACCTGCAGCCGACCAT 62.415 66.667 8.66 0.00 0.00 3.55
1534 4656 4.742201 CGACGGGTCCACCTGCAG 62.742 72.222 6.78 6.78 46.43 4.41
1537 4659 2.221906 CTTACCGACGGGTCCACCTG 62.222 65.000 20.00 2.75 46.01 4.00
1538 4660 1.980772 CTTACCGACGGGTCCACCT 60.981 63.158 20.00 0.00 46.01 4.00
1539 4661 2.575461 CTTACCGACGGGTCCACC 59.425 66.667 20.00 0.00 46.01 4.61
1540 4662 2.125793 GCTTACCGACGGGTCCAC 60.126 66.667 20.00 0.00 46.01 4.02
1541 4663 3.384532 GGCTTACCGACGGGTCCA 61.385 66.667 20.00 0.00 46.01 4.02
1542 4664 2.728435 ATGGCTTACCGACGGGTCC 61.728 63.158 20.00 13.18 46.01 4.46
1543 4665 1.520787 CATGGCTTACCGACGGGTC 60.521 63.158 20.00 2.15 46.01 4.46
1545 4667 0.810031 CTTCATGGCTTACCGACGGG 60.810 60.000 20.00 0.98 39.70 5.28
1546 4668 0.810031 CCTTCATGGCTTACCGACGG 60.810 60.000 13.61 13.61 39.70 4.79
1547 4669 2.677971 CCTTCATGGCTTACCGACG 58.322 57.895 0.00 0.00 39.70 5.12
1563 4685 1.408969 AATGTTTTGGAACCACGCCT 58.591 45.000 0.00 0.00 34.80 5.52
1564 4686 2.131972 GAAATGTTTTGGAACCACGCC 58.868 47.619 0.00 0.00 34.80 5.68
1568 4690 6.234177 ACAACTTTGAAATGTTTTGGAACCA 58.766 32.000 0.00 0.00 34.80 3.67
1578 4700 5.518487 CACGGCTAAAACAACTTTGAAATGT 59.482 36.000 0.00 0.00 0.00 2.71
1579 4701 5.746245 TCACGGCTAAAACAACTTTGAAATG 59.254 36.000 0.00 0.00 0.00 2.32
1588 4710 5.413969 AACTTACTCACGGCTAAAACAAC 57.586 39.130 0.00 0.00 0.00 3.32
1589 4711 4.512571 GGAACTTACTCACGGCTAAAACAA 59.487 41.667 0.00 0.00 0.00 2.83
1595 4717 1.927487 TGGGAACTTACTCACGGCTA 58.073 50.000 0.00 0.00 0.00 3.93
1596 4718 1.053424 TTGGGAACTTACTCACGGCT 58.947 50.000 0.00 0.00 0.00 5.52
1598 4720 2.536761 TGTTGGGAACTTACTCACGG 57.463 50.000 0.00 0.00 0.00 4.94
1599 4721 4.513692 TGAAATGTTGGGAACTTACTCACG 59.486 41.667 0.00 0.00 0.00 4.35
1608 4730 5.049828 CCAAAGAACTGAAATGTTGGGAAC 58.950 41.667 0.00 0.00 33.40 3.62
1611 4733 3.993920 CCCAAAGAACTGAAATGTTGGG 58.006 45.455 4.95 4.95 46.76 4.12
1613 4735 4.038402 AGAGCCCAAAGAACTGAAATGTTG 59.962 41.667 0.00 0.00 0.00 3.33
1614 4736 4.218312 AGAGCCCAAAGAACTGAAATGTT 58.782 39.130 0.00 0.00 0.00 2.71
1640 4762 2.680312 CTGAAATCAGGAGCCTCGAA 57.320 50.000 2.38 0.00 40.20 3.71
1702 4829 9.927668 TCTCAAAACAAGAAAATTTCTCAACTT 57.072 25.926 8.86 0.00 39.61 2.66
1703 4830 9.927668 TTCTCAAAACAAGAAAATTTCTCAACT 57.072 25.926 8.86 0.00 39.61 3.16
1757 4884 3.248495 TGTGTTCTTTGTACCGACACA 57.752 42.857 3.74 3.74 45.73 3.72
1758 4885 4.603231 TTTGTGTTCTTTGTACCGACAC 57.397 40.909 0.00 0.00 40.62 3.67
1790 4917 9.743581 TGGTCTACGGATATGAATGTAGTAATA 57.256 33.333 0.00 0.00 36.53 0.98
1798 4926 4.873746 AGGTGGTCTACGGATATGAATG 57.126 45.455 0.00 0.00 0.00 2.67
1809 4937 1.817447 AGTCGTTGCTAGGTGGTCTAC 59.183 52.381 0.00 0.00 0.00 2.59
1828 4956 8.454106 CAAATGACTGGTTAAGAAGGATTGTAG 58.546 37.037 0.00 0.00 0.00 2.74
1881 5010 2.562298 TCGATTGAGCCAAAGCCAAAAT 59.438 40.909 0.00 0.00 41.25 1.82
1897 5026 0.960364 AGCAACGCATGGGTTCGATT 60.960 50.000 23.87 8.23 0.00 3.34
1911 5046 7.599998 ACATTTTGGTCAAAATATCTCAGCAAC 59.400 33.333 17.83 0.00 46.01 4.17
1979 5117 9.151471 TCGTTGTTCATAAAATTTCACCAAAAA 57.849 25.926 0.00 0.00 0.00 1.94
2017 5155 1.451927 TTAGAAGCAGCCATGGCCG 60.452 57.895 33.14 24.82 43.17 6.13
2071 5209 2.359848 ACTATCGCCACACACGCTTATA 59.640 45.455 0.00 0.00 0.00 0.98
2072 5210 1.136305 ACTATCGCCACACACGCTTAT 59.864 47.619 0.00 0.00 0.00 1.73
2073 5211 0.528924 ACTATCGCCACACACGCTTA 59.471 50.000 0.00 0.00 0.00 3.09
2074 5212 0.736325 GACTATCGCCACACACGCTT 60.736 55.000 0.00 0.00 0.00 4.68
2117 5255 2.666026 GCTTTACAGCAAACCAAGCTC 58.334 47.619 0.00 0.00 46.49 4.09
2203 5353 3.915437 ACTGAAATTAGGTGCCAAACG 57.085 42.857 0.00 0.00 0.00 3.60
2253 5403 1.613255 CGCCTGTGAACCCATTAACCT 60.613 52.381 0.00 0.00 0.00 3.50
2394 5587 1.374252 GATGCCGTGACGTGGAAGT 60.374 57.895 3.64 0.00 0.00 3.01
2395 5588 0.172578 TAGATGCCGTGACGTGGAAG 59.827 55.000 3.64 0.00 0.00 3.46
2456 5649 7.985634 TCTTGACTTTGTTAGTGCAATTTTC 57.014 32.000 0.00 0.00 37.17 2.29
2511 5735 6.540189 CCAGATAACAGTTTCAATCGAATCCT 59.460 38.462 0.00 0.00 0.00 3.24
2513 5737 7.308782 ACCAGATAACAGTTTCAATCGAATC 57.691 36.000 0.00 0.00 0.00 2.52
2531 5755 5.279406 GCTCTTCTGCTGATGTATACCAGAT 60.279 44.000 11.91 0.00 33.10 2.90
2539 5763 2.676176 GCACTGCTCTTCTGCTGATGTA 60.676 50.000 6.41 0.00 36.10 2.29
2540 5764 1.944892 GCACTGCTCTTCTGCTGATGT 60.945 52.381 6.41 0.00 36.10 3.06
2552 5776 3.070159 TCTGGTTGGATATAGCACTGCTC 59.930 47.826 6.86 0.00 40.44 4.26
2553 5777 3.041211 TCTGGTTGGATATAGCACTGCT 58.959 45.455 8.95 8.95 43.41 4.24
2554 5778 3.475566 TCTGGTTGGATATAGCACTGC 57.524 47.619 0.00 0.00 0.00 4.40
2583 5807 1.340502 TGCAGTTCCAGGTGTTCACAA 60.341 47.619 5.32 0.00 0.00 3.33
2585 5809 1.267806 CATGCAGTTCCAGGTGTTCAC 59.732 52.381 0.00 0.00 0.00 3.18
2663 5889 0.328258 ACAATAGGGGTGGTGACTGC 59.672 55.000 0.00 0.00 0.00 4.40
2687 5913 2.036217 ACGTCTCGTCCCACACATAAAA 59.964 45.455 0.00 0.00 33.69 1.52
2688 5914 1.614903 ACGTCTCGTCCCACACATAAA 59.385 47.619 0.00 0.00 33.69 1.40
2689 5915 1.068125 CACGTCTCGTCCCACACATAA 60.068 52.381 0.00 0.00 38.32 1.90
2691 5917 1.289066 CACGTCTCGTCCCACACAT 59.711 57.895 0.00 0.00 38.32 3.21
2695 5921 1.803366 AAGACCACGTCTCGTCCCAC 61.803 60.000 0.00 0.00 42.59 4.61
2696 5922 1.529948 AAGACCACGTCTCGTCCCA 60.530 57.895 0.00 0.00 42.59 4.37
2698 5924 1.733399 GCAAGACCACGTCTCGTCC 60.733 63.158 0.00 0.00 42.59 4.79
2699 5925 0.318784 AAGCAAGACCACGTCTCGTC 60.319 55.000 0.00 0.00 42.59 4.20
2700 5926 0.104304 AAAGCAAGACCACGTCTCGT 59.896 50.000 0.00 0.00 42.59 4.18
2701 5927 2.060326 TAAAGCAAGACCACGTCTCG 57.940 50.000 0.00 0.00 42.59 4.04
2709 5935 6.402226 CCTTTGACTAACGATAAAGCAAGACC 60.402 42.308 0.00 0.00 0.00 3.85
2710 5936 6.367969 TCCTTTGACTAACGATAAAGCAAGAC 59.632 38.462 0.00 0.00 0.00 3.01
2848 6074 1.905843 CGGCCATCCAAACAACCCA 60.906 57.895 2.24 0.00 0.00 4.51
3429 6997 9.191995 GAAAAGAAACAGAAACAGAAACAGAAA 57.808 29.630 0.00 0.00 0.00 2.52
3430 6998 7.812669 GGAAAAGAAACAGAAACAGAAACAGAA 59.187 33.333 0.00 0.00 0.00 3.02
3431 6999 7.176690 AGGAAAAGAAACAGAAACAGAAACAGA 59.823 33.333 0.00 0.00 0.00 3.41
3432 7000 7.315890 AGGAAAAGAAACAGAAACAGAAACAG 58.684 34.615 0.00 0.00 0.00 3.16
3433 7001 7.227049 AGGAAAAGAAACAGAAACAGAAACA 57.773 32.000 0.00 0.00 0.00 2.83
3434 7002 8.534333 AAAGGAAAAGAAACAGAAACAGAAAC 57.466 30.769 0.00 0.00 0.00 2.78
3598 7186 9.696917 GATGAACTTTTGTAAAGAACCATGAAT 57.303 29.630 6.20 0.00 0.00 2.57
3710 7298 5.543020 ACCTTATATTTAGGAACGGAGGGAG 59.457 44.000 9.82 0.00 36.58 4.30
3711 7299 5.306160 CACCTTATATTTAGGAACGGAGGGA 59.694 44.000 9.82 0.00 36.58 4.20
3712 7300 5.071384 ACACCTTATATTTAGGAACGGAGGG 59.929 44.000 9.82 0.00 36.58 4.30
3713 7301 6.170846 ACACCTTATATTTAGGAACGGAGG 57.829 41.667 9.82 0.00 36.58 4.30
3750 7338 8.784043 GGTCAAACATAGACAATAGTTGAGTTT 58.216 33.333 0.00 0.00 37.74 2.66
3751 7339 7.936847 TGGTCAAACATAGACAATAGTTGAGTT 59.063 33.333 0.00 0.00 37.74 3.01
3752 7340 7.450074 TGGTCAAACATAGACAATAGTTGAGT 58.550 34.615 0.00 0.00 37.74 3.41
3753 7341 7.905604 TGGTCAAACATAGACAATAGTTGAG 57.094 36.000 0.00 0.00 37.74 3.02
3754 7342 7.936847 AGTTGGTCAAACATAGACAATAGTTGA 59.063 33.333 0.00 0.00 41.61 3.18
3755 7343 8.099364 AGTTGGTCAAACATAGACAATAGTTG 57.901 34.615 0.00 0.00 41.61 3.16
3756 7344 8.691661 AAGTTGGTCAAACATAGACAATAGTT 57.308 30.769 0.00 0.00 41.61 2.24
3757 7345 8.691661 AAAGTTGGTCAAACATAGACAATAGT 57.308 30.769 0.00 0.00 41.61 2.12
3761 7349 8.726988 GCTATAAAGTTGGTCAAACATAGACAA 58.273 33.333 0.00 0.00 41.61 3.18
3762 7350 7.880713 TGCTATAAAGTTGGTCAAACATAGACA 59.119 33.333 0.00 0.00 41.61 3.41
3763 7351 8.263940 TGCTATAAAGTTGGTCAAACATAGAC 57.736 34.615 0.00 0.00 41.61 2.59
3764 7352 8.856153 TTGCTATAAAGTTGGTCAAACATAGA 57.144 30.769 0.00 0.00 41.61 1.98
3765 7353 9.906660 TTTTGCTATAAAGTTGGTCAAACATAG 57.093 29.630 0.00 0.00 41.61 2.23
3835 7423 9.899226 CATTATCACTAGATTCGTCATGAACTA 57.101 33.333 0.00 0.00 40.00 2.24
3836 7424 8.633561 TCATTATCACTAGATTCGTCATGAACT 58.366 33.333 0.00 0.00 40.00 3.01
3837 7425 8.803201 TCATTATCACTAGATTCGTCATGAAC 57.197 34.615 0.00 0.00 40.00 3.18
3838 7426 9.987272 AATCATTATCACTAGATTCGTCATGAA 57.013 29.630 0.00 0.00 41.81 2.57
3839 7427 9.987272 AAATCATTATCACTAGATTCGTCATGA 57.013 29.630 0.00 0.00 35.67 3.07
3841 7429 9.212641 CCAAATCATTATCACTAGATTCGTCAT 57.787 33.333 0.00 0.00 35.67 3.06
3842 7430 8.204160 ACCAAATCATTATCACTAGATTCGTCA 58.796 33.333 0.00 0.00 35.67 4.35
3843 7431 8.594881 ACCAAATCATTATCACTAGATTCGTC 57.405 34.615 0.00 0.00 35.67 4.20
3889 7477 9.706691 CTCTAAGTTTGACCAAGTTTATAGACA 57.293 33.333 0.00 0.00 30.16 3.41
3890 7478 9.924650 TCTCTAAGTTTGACCAAGTTTATAGAC 57.075 33.333 0.00 0.00 30.16 2.59
3935 7523 9.720769 CCGTTCCTCAATATAAGGTGTATTATT 57.279 33.333 4.45 0.00 35.29 1.40
3936 7524 9.096823 TCCGTTCCTCAATATAAGGTGTATTAT 57.903 33.333 4.45 0.00 35.29 1.28
3937 7525 8.481492 TCCGTTCCTCAATATAAGGTGTATTA 57.519 34.615 4.45 0.00 35.29 0.98
3938 7526 7.369551 TCCGTTCCTCAATATAAGGTGTATT 57.630 36.000 4.45 0.00 35.29 1.89
3939 7527 6.014499 CCTCCGTTCCTCAATATAAGGTGTAT 60.014 42.308 4.45 0.00 35.29 2.29
3940 7528 5.303589 CCTCCGTTCCTCAATATAAGGTGTA 59.696 44.000 4.45 0.00 35.29 2.90
3941 7529 4.101119 CCTCCGTTCCTCAATATAAGGTGT 59.899 45.833 4.45 0.00 35.29 4.16
3942 7530 4.503296 CCCTCCGTTCCTCAATATAAGGTG 60.503 50.000 4.45 0.00 35.29 4.00
3943 7531 3.646637 CCCTCCGTTCCTCAATATAAGGT 59.353 47.826 4.45 0.00 35.29 3.50
3944 7532 3.901844 TCCCTCCGTTCCTCAATATAAGG 59.098 47.826 0.00 0.00 35.05 2.69
3945 7533 4.589374 ACTCCCTCCGTTCCTCAATATAAG 59.411 45.833 0.00 0.00 0.00 1.73
3946 7534 4.553678 ACTCCCTCCGTTCCTCAATATAA 58.446 43.478 0.00 0.00 0.00 0.98
3947 7535 4.194678 ACTCCCTCCGTTCCTCAATATA 57.805 45.455 0.00 0.00 0.00 0.86
3948 7536 3.047695 ACTCCCTCCGTTCCTCAATAT 57.952 47.619 0.00 0.00 0.00 1.28
3949 7537 2.544844 ACTCCCTCCGTTCCTCAATA 57.455 50.000 0.00 0.00 0.00 1.90
3950 7538 2.544844 TACTCCCTCCGTTCCTCAAT 57.455 50.000 0.00 0.00 0.00 2.57
3951 7539 2.544844 ATACTCCCTCCGTTCCTCAA 57.455 50.000 0.00 0.00 0.00 3.02
3952 7540 2.544844 AATACTCCCTCCGTTCCTCA 57.455 50.000 0.00 0.00 0.00 3.86
3953 7541 3.067883 GTGTAATACTCCCTCCGTTCCTC 59.932 52.174 0.00 0.00 0.00 3.71
3954 7542 3.029570 GTGTAATACTCCCTCCGTTCCT 58.970 50.000 0.00 0.00 0.00 3.36
3955 7543 2.762327 TGTGTAATACTCCCTCCGTTCC 59.238 50.000 0.00 0.00 0.00 3.62
3956 7544 4.460948 TTGTGTAATACTCCCTCCGTTC 57.539 45.455 0.00 0.00 0.00 3.95
3957 7545 4.895668 TTTGTGTAATACTCCCTCCGTT 57.104 40.909 0.00 0.00 0.00 4.44
3958 7546 4.224370 ACATTTGTGTAATACTCCCTCCGT 59.776 41.667 0.00 0.00 0.00 4.69
3959 7547 4.766375 ACATTTGTGTAATACTCCCTCCG 58.234 43.478 0.00 0.00 0.00 4.63
3960 7548 6.177610 TGAACATTTGTGTAATACTCCCTCC 58.822 40.000 0.00 0.00 0.00 4.30
3961 7549 7.681939 TTGAACATTTGTGTAATACTCCCTC 57.318 36.000 0.00 0.00 0.00 4.30
3962 7550 7.669722 ACATTGAACATTTGTGTAATACTCCCT 59.330 33.333 0.00 0.00 0.00 4.20
3963 7551 7.754924 CACATTGAACATTTGTGTAATACTCCC 59.245 37.037 0.00 0.00 36.77 4.30
3964 7552 8.673626 CACATTGAACATTTGTGTAATACTCC 57.326 34.615 0.00 0.00 36.77 3.85
4185 7783 9.691362 AAATTAGAGCACACGACATTTTTAAAT 57.309 25.926 0.00 0.00 0.00 1.40
4297 7896 9.915629 AAAACTCCCAAACAAAATTTTAAAACC 57.084 25.926 1.97 0.00 0.00 3.27
4972 9210 7.820872 CCACTTTAAACCCTAAATTCGTAGAGA 59.179 37.037 0.00 0.00 38.43 3.10
5072 9310 1.611673 CCTTGTGGAGGGCAAGTAGTG 60.612 57.143 0.00 0.00 42.26 2.74
5085 9323 0.983378 CTAGACCCCTCCCCTTGTGG 60.983 65.000 0.00 0.00 0.00 4.17
5094 9332 1.482954 ACCGCTAAACTAGACCCCTC 58.517 55.000 0.00 0.00 0.00 4.30
5099 9337 7.232300 GTGATTTTTGTACCGCTAAACTAGAC 58.768 38.462 0.00 0.00 0.00 2.59
5110 9354 5.453648 TCAATTTCCGTGATTTTTGTACCG 58.546 37.500 0.00 0.00 0.00 4.02
5130 9374 7.172532 AGTCGTAACTTTACATGAAGCATTCAA 59.827 33.333 0.00 0.00 46.51 2.69
5134 9378 5.932303 ACAGTCGTAACTTTACATGAAGCAT 59.068 36.000 0.00 0.00 31.71 3.79
5153 9738 1.438651 TACCGAAATGCAGCACAGTC 58.561 50.000 0.00 0.00 0.00 3.51
5155 9740 1.331756 GGATACCGAAATGCAGCACAG 59.668 52.381 0.00 0.00 0.00 3.66
5158 9743 2.016318 CAAGGATACCGAAATGCAGCA 58.984 47.619 0.00 0.00 37.17 4.41
5159 9744 2.017049 ACAAGGATACCGAAATGCAGC 58.983 47.619 0.00 0.00 37.17 5.25
5160 9745 3.009723 ACACAAGGATACCGAAATGCAG 58.990 45.455 0.00 0.00 37.17 4.41
5162 9747 3.006940 TGACACAAGGATACCGAAATGC 58.993 45.455 0.00 0.00 37.17 3.56
5165 9750 5.471556 TTAGTGACACAAGGATACCGAAA 57.528 39.130 8.59 0.00 37.17 3.46
5166 9751 5.471556 TTTAGTGACACAAGGATACCGAA 57.528 39.130 8.59 0.00 37.17 4.30
5167 9752 5.011329 AGTTTTAGTGACACAAGGATACCGA 59.989 40.000 8.59 0.00 37.17 4.69
5168 9753 5.120208 CAGTTTTAGTGACACAAGGATACCG 59.880 44.000 8.59 0.00 37.17 4.02
5181 9785 5.762179 ATCATCTGGGTCAGTTTTAGTGA 57.238 39.130 0.00 0.00 32.61 3.41
5183 9787 5.880901 ACAATCATCTGGGTCAGTTTTAGT 58.119 37.500 0.00 0.00 32.61 2.24
5201 9805 2.482839 GCCTGCAGGTAGAGAGACAATC 60.483 54.545 32.81 8.48 37.57 2.67
5364 10017 3.674138 GCTCATATTGGGCACACAAACAG 60.674 47.826 0.00 0.00 45.01 3.16
5406 10059 2.093235 AGCCAGCACTAGAAGGAATCAC 60.093 50.000 0.00 0.00 0.00 3.06
5538 10200 4.473199 GAAGTATTGCTTTTGTCGAACCC 58.527 43.478 0.00 0.00 37.59 4.11
5560 10222 0.110823 CGTTTTCCGAAACTGGCTCG 60.111 55.000 0.00 0.00 42.35 5.03
5578 10240 2.656560 AGAGTTGGATTTCTCCGTCG 57.343 50.000 0.00 0.00 45.37 5.12
5579 10241 4.399934 AGAGTAGAGTTGGATTTCTCCGTC 59.600 45.833 0.00 0.00 45.37 4.79
5580 10242 4.158764 CAGAGTAGAGTTGGATTTCTCCGT 59.841 45.833 0.00 0.00 45.37 4.69
5596 10272 3.930336 TGACCTGAATGTTGCAGAGTAG 58.070 45.455 0.00 0.00 35.39 2.57
5638 10314 6.036470 GCTTCTTTTATTTGCCCACTGTATC 58.964 40.000 0.00 0.00 0.00 2.24
5645 10321 5.862845 TGATTTGCTTCTTTTATTTGCCCA 58.137 33.333 0.00 0.00 0.00 5.36
5654 10330 7.869429 ACGATTCTTTCATGATTTGCTTCTTTT 59.131 29.630 0.00 0.00 0.00 2.27
5705 10404 2.742954 TCATTGCGATTTCATCAGCG 57.257 45.000 0.00 0.00 33.59 5.18
5718 10417 6.536224 CCCTCTTACCAAAATGATTTCATTGC 59.464 38.462 6.56 0.00 45.06 3.56
5768 10467 1.539388 TCTGGCGTGCTTGTTTTATGG 59.461 47.619 0.00 0.00 0.00 2.74
5915 10614 1.201414 GTAAGTTGGTGGCCCATTTCG 59.799 52.381 0.00 0.00 41.49 3.46
5961 10660 1.834822 GGAGGGGCGCTAGTCTCAT 60.835 63.158 7.64 0.00 0.00 2.90
6045 10744 0.682209 ATGGCCATCCTGAAGCACAC 60.682 55.000 14.09 0.00 0.00 3.82
6159 10858 1.053424 AAGGCTCACTAACAACGGGA 58.947 50.000 0.00 0.00 0.00 5.14


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.