Multiple sequence alignment - TraesCS2A01G213700

Loading Multiple Alignment...

Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS2A01G213700 chr2A 100.000 5009 0 0 1 5009 199276771 199271763 0.000000e+00 9250.0
1 TraesCS2A01G213700 chr2D 93.391 4706 159 58 235 4857 186777228 186772592 0.000000e+00 6828.0
2 TraesCS2A01G213700 chr2D 97.143 105 3 0 4905 5009 186756712 186756608 1.430000e-40 178.0
3 TraesCS2A01G213700 chr2B 92.115 4540 153 75 382 4835 239930660 239926240 0.000000e+00 6211.0
4 TraesCS2A01G213700 chr2B 82.184 174 26 5 4836 5008 33544260 33544091 1.450000e-30 145.0
5 TraesCS2A01G213700 chr2B 81.034 174 25 5 4843 5009 793748892 793748720 1.130000e-26 132.0
6 TraesCS2A01G213700 chr2B 91.667 72 6 0 178 249 239930813 239930742 3.190000e-17 100.0
7 TraesCS2A01G213700 chr3B 88.506 174 10 6 4843 5009 531184103 531183933 8.500000e-48 202.0
8 TraesCS2A01G213700 chr3B 83.146 178 23 7 4835 5009 801299205 801299378 6.710000e-34 156.0
9 TraesCS2A01G213700 chr5D 84.118 170 21 4 4845 5008 340747544 340747375 5.190000e-35 159.0
10 TraesCS2A01G213700 chr5D 91.228 57 4 1 2419 2474 476461292 476461348 5.380000e-10 76.8
11 TraesCS2A01G213700 chr1D 83.529 170 25 3 4838 5005 33607240 33607072 6.710000e-34 156.0
12 TraesCS2A01G213700 chr1D 81.461 178 22 8 4842 5009 22338950 22338774 8.750000e-28 135.0
13 TraesCS2A01G213700 chr1D 80.368 163 28 4 4849 5007 463589453 463589615 2.450000e-23 121.0
14 TraesCS2A01G213700 chr1D 79.412 170 25 6 4849 5009 463343598 463343430 1.470000e-20 111.0
15 TraesCS2A01G213700 chr1D 76.282 156 23 11 4858 5005 7506725 7506576 2.500000e-08 71.3
16 TraesCS2A01G213700 chr1B 81.215 181 25 4 4838 5009 33034530 33034710 2.430000e-28 137.0
17 TraesCS2A01G213700 chr1B 82.143 168 16 10 4842 5009 38267173 38267326 1.130000e-26 132.0
18 TraesCS2A01G213700 chr1B 87.037 108 13 1 4902 5009 38532983 38533089 2.450000e-23 121.0
19 TraesCS2A01G213700 chr7A 81.503 173 17 4 4837 5008 34434101 34434259 1.460000e-25 128.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS2A01G213700 chr2A 199271763 199276771 5008 True 9250.0 9250 100.000 1 5009 1 chr2A.!!$R1 5008
1 TraesCS2A01G213700 chr2D 186772592 186777228 4636 True 6828.0 6828 93.391 235 4857 1 chr2D.!!$R2 4622
2 TraesCS2A01G213700 chr2B 239926240 239930813 4573 True 3155.5 6211 91.891 178 4835 2 chr2B.!!$R3 4657

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
165 166 0.034896 CTGTGGCCTCCTGTAACGTT 59.965 55.000 5.88 5.88 0.0 3.99 F
1082 1138 0.035915 GCCCGCCTCTTCTTCTTCTT 60.036 55.000 0.00 0.00 0.0 2.52 F
1748 1844 0.239879 GGAGTCTCGATCGATCCTGC 59.760 60.000 23.08 19.52 0.0 4.85 F
1890 1986 0.462759 CATTGCCGGTCCTTCTCCTC 60.463 60.000 1.90 0.00 0.0 3.71 F
3295 3404 1.078143 GTGGGTGAGCTCATGGACC 60.078 63.158 21.47 19.07 0.0 4.46 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1092 1148 0.032117 GAAATTGGGGAAGGAGGGGG 60.032 60.0 0.00 0.00 0.00 5.40 R
2589 2698 0.888619 TATCCTCCAGCGCCTTATCG 59.111 55.0 2.29 0.00 0.00 2.92 R
3282 3391 1.195115 GGTACAGGTCCATGAGCTCA 58.805 55.0 20.79 20.79 38.40 4.26 R
3488 3597 2.391616 TCAGCTCGAGCAATCAATGT 57.608 45.0 36.87 12.98 45.16 2.71 R
4983 5123 0.386113 TTTTTACCACGCCTTGCACC 59.614 50.0 0.00 0.00 0.00 5.01 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
19 20 2.781681 CAGAAACGGGTCCAACCTAT 57.218 50.000 0.00 0.00 38.64 2.57
20 21 2.356135 CAGAAACGGGTCCAACCTATG 58.644 52.381 0.00 0.00 38.64 2.23
21 22 2.027561 CAGAAACGGGTCCAACCTATGA 60.028 50.000 0.00 0.00 38.64 2.15
22 23 2.027469 AGAAACGGGTCCAACCTATGAC 60.027 50.000 0.00 0.00 38.64 3.06
23 24 1.354101 AACGGGTCCAACCTATGACA 58.646 50.000 0.00 0.00 38.64 3.58
24 25 1.580059 ACGGGTCCAACCTATGACAT 58.420 50.000 0.00 0.00 38.64 3.06
25 26 1.913419 ACGGGTCCAACCTATGACATT 59.087 47.619 0.00 0.00 38.64 2.71
26 27 2.093128 ACGGGTCCAACCTATGACATTC 60.093 50.000 0.00 0.00 38.64 2.67
27 28 2.745152 CGGGTCCAACCTATGACATTCC 60.745 54.545 0.00 0.00 38.64 3.01
28 29 2.241176 GGGTCCAACCTATGACATTCCA 59.759 50.000 0.00 0.00 38.64 3.53
29 30 3.545703 GGTCCAACCTATGACATTCCAG 58.454 50.000 0.00 0.00 34.73 3.86
30 31 3.054361 GGTCCAACCTATGACATTCCAGT 60.054 47.826 0.00 0.00 34.73 4.00
31 32 4.163458 GGTCCAACCTATGACATTCCAGTA 59.837 45.833 0.00 0.00 34.73 2.74
32 33 5.116882 GTCCAACCTATGACATTCCAGTAC 58.883 45.833 0.00 0.00 0.00 2.73
33 34 4.780554 TCCAACCTATGACATTCCAGTACA 59.219 41.667 0.00 0.00 0.00 2.90
34 35 5.428457 TCCAACCTATGACATTCCAGTACAT 59.572 40.000 0.00 0.00 0.00 2.29
35 36 6.069673 TCCAACCTATGACATTCCAGTACATT 60.070 38.462 0.00 0.00 0.00 2.71
36 37 7.126573 TCCAACCTATGACATTCCAGTACATTA 59.873 37.037 0.00 0.00 0.00 1.90
37 38 7.226720 CCAACCTATGACATTCCAGTACATTAC 59.773 40.741 0.00 0.00 0.00 1.89
38 39 7.676683 ACCTATGACATTCCAGTACATTACT 57.323 36.000 0.00 0.00 40.28 2.24
52 53 7.023197 AGTACATTACTGAAACCAAACACAC 57.977 36.000 0.00 0.00 37.69 3.82
53 54 5.257082 ACATTACTGAAACCAAACACACC 57.743 39.130 0.00 0.00 0.00 4.16
54 55 4.098807 ACATTACTGAAACCAAACACACCC 59.901 41.667 0.00 0.00 0.00 4.61
55 56 2.525105 ACTGAAACCAAACACACCCT 57.475 45.000 0.00 0.00 0.00 4.34
56 57 2.815158 ACTGAAACCAAACACACCCTT 58.185 42.857 0.00 0.00 0.00 3.95
57 58 3.970842 ACTGAAACCAAACACACCCTTA 58.029 40.909 0.00 0.00 0.00 2.69
58 59 3.951680 ACTGAAACCAAACACACCCTTAG 59.048 43.478 0.00 0.00 0.00 2.18
59 60 4.204012 CTGAAACCAAACACACCCTTAGA 58.796 43.478 0.00 0.00 0.00 2.10
60 61 4.601084 TGAAACCAAACACACCCTTAGAA 58.399 39.130 0.00 0.00 0.00 2.10
61 62 5.205056 TGAAACCAAACACACCCTTAGAAT 58.795 37.500 0.00 0.00 0.00 2.40
62 63 6.366340 TGAAACCAAACACACCCTTAGAATA 58.634 36.000 0.00 0.00 0.00 1.75
63 64 6.263617 TGAAACCAAACACACCCTTAGAATAC 59.736 38.462 0.00 0.00 0.00 1.89
64 65 5.313280 ACCAAACACACCCTTAGAATACA 57.687 39.130 0.00 0.00 0.00 2.29
65 66 5.067954 ACCAAACACACCCTTAGAATACAC 58.932 41.667 0.00 0.00 0.00 2.90
66 67 5.163131 ACCAAACACACCCTTAGAATACACT 60.163 40.000 0.00 0.00 0.00 3.55
67 68 5.181245 CCAAACACACCCTTAGAATACACTG 59.819 44.000 0.00 0.00 0.00 3.66
68 69 5.562298 AACACACCCTTAGAATACACTGT 57.438 39.130 0.00 0.00 0.00 3.55
69 70 4.894784 ACACACCCTTAGAATACACTGTG 58.105 43.478 6.19 6.19 0.00 3.66
70 71 4.347000 ACACACCCTTAGAATACACTGTGT 59.653 41.667 18.51 18.51 36.22 3.72
71 72 5.541101 ACACACCCTTAGAATACACTGTGTA 59.459 40.000 21.68 21.68 37.24 2.90
72 73 6.212791 ACACACCCTTAGAATACACTGTGTAT 59.787 38.462 23.99 23.99 44.79 2.29
73 74 7.398047 ACACACCCTTAGAATACACTGTGTATA 59.602 37.037 28.21 14.16 42.29 1.47
74 75 8.421784 CACACCCTTAGAATACACTGTGTATAT 58.578 37.037 28.21 22.24 42.29 0.86
75 76 9.650714 ACACCCTTAGAATACACTGTGTATATA 57.349 33.333 28.21 21.41 42.29 0.86
76 77 9.909644 CACCCTTAGAATACACTGTGTATATAC 57.090 37.037 28.21 21.80 42.29 1.47
77 78 9.086758 ACCCTTAGAATACACTGTGTATATACC 57.913 37.037 28.21 18.61 42.29 2.73
78 79 8.242053 CCCTTAGAATACACTGTGTATATACCG 58.758 40.741 28.21 17.96 42.29 4.02
79 80 8.790718 CCTTAGAATACACTGTGTATATACCGT 58.209 37.037 28.21 15.08 42.29 4.83
82 83 8.681486 AGAATACACTGTGTATATACCGTACA 57.319 34.615 28.21 7.28 42.29 2.90
83 84 9.123902 AGAATACACTGTGTATATACCGTACAA 57.876 33.333 28.21 4.00 42.29 2.41
84 85 9.173939 GAATACACTGTGTATATACCGTACAAC 57.826 37.037 28.21 1.61 42.29 3.32
85 86 6.513806 ACACTGTGTATATACCGTACAACA 57.486 37.500 12.53 5.96 34.15 3.33
86 87 7.104043 ACACTGTGTATATACCGTACAACAT 57.896 36.000 12.53 0.00 34.15 2.71
87 88 8.224389 ACACTGTGTATATACCGTACAACATA 57.776 34.615 12.53 0.00 34.15 2.29
88 89 8.853126 ACACTGTGTATATACCGTACAACATAT 58.147 33.333 12.53 0.00 34.15 1.78
89 90 9.124807 CACTGTGTATATACCGTACAACATATG 57.875 37.037 10.38 0.00 34.15 1.78
90 91 8.853126 ACTGTGTATATACCGTACAACATATGT 58.147 33.333 10.38 1.41 46.36 2.29
99 100 7.350744 ACCGTACAACATATGTATTAGGTCA 57.649 36.000 9.21 0.00 45.87 4.02
100 101 7.784037 ACCGTACAACATATGTATTAGGTCAA 58.216 34.615 9.21 0.00 45.87 3.18
101 102 7.707893 ACCGTACAACATATGTATTAGGTCAAC 59.292 37.037 9.21 0.00 45.87 3.18
102 103 7.170320 CCGTACAACATATGTATTAGGTCAACC 59.830 40.741 9.21 0.00 45.87 3.77
103 104 7.096353 CGTACAACATATGTATTAGGTCAACCG 60.096 40.741 9.21 0.00 45.87 4.44
104 105 6.646267 ACAACATATGTATTAGGTCAACCGT 58.354 36.000 9.21 0.00 41.63 4.83
105 106 7.107542 ACAACATATGTATTAGGTCAACCGTT 58.892 34.615 9.21 0.00 41.63 4.44
106 107 7.065324 ACAACATATGTATTAGGTCAACCGTTG 59.935 37.037 9.21 4.78 41.63 4.10
107 108 6.646267 ACATATGTATTAGGTCAACCGTTGT 58.354 36.000 6.56 0.00 42.08 3.32
108 109 7.784037 ACATATGTATTAGGTCAACCGTTGTA 58.216 34.615 6.56 0.00 42.08 2.41
109 110 7.707893 ACATATGTATTAGGTCAACCGTTGTAC 59.292 37.037 6.56 7.93 42.08 2.90
110 111 4.484236 TGTATTAGGTCAACCGTTGTACG 58.516 43.478 11.01 0.00 42.08 3.67
111 112 3.665745 ATTAGGTCAACCGTTGTACGT 57.334 42.857 11.01 11.16 40.58 3.57
112 113 2.420628 TAGGTCAACCGTTGTACGTG 57.579 50.000 11.01 0.00 40.58 4.49
113 114 0.877213 AGGTCAACCGTTGTACGTGC 60.877 55.000 11.01 0.00 40.58 5.34
114 115 1.199859 GTCAACCGTTGTACGTGCG 59.800 57.895 11.01 0.00 40.58 5.34
115 116 1.065436 TCAACCGTTGTACGTGCGA 59.935 52.632 11.01 0.00 40.58 5.10
116 117 0.935831 TCAACCGTTGTACGTGCGAG 60.936 55.000 11.01 0.00 40.58 5.03
117 118 2.305127 AACCGTTGTACGTGCGAGC 61.305 57.895 0.00 0.00 40.58 5.03
118 119 3.823421 CCGTTGTACGTGCGAGCG 61.823 66.667 0.00 2.68 40.58 5.03
119 120 4.464043 CGTTGTACGTGCGAGCGC 62.464 66.667 8.08 8.08 36.74 5.92
136 137 4.308458 CGTCTGACCGGGGCACAA 62.308 66.667 6.32 0.00 0.00 3.33
137 138 2.351276 GTCTGACCGGGGCACAAT 59.649 61.111 6.32 0.00 0.00 2.71
138 139 1.745489 GTCTGACCGGGGCACAATC 60.745 63.158 6.32 0.00 0.00 2.67
139 140 2.438434 CTGACCGGGGCACAATCC 60.438 66.667 6.32 0.00 0.00 3.01
140 141 3.995506 CTGACCGGGGCACAATCCC 62.996 68.421 6.32 0.00 45.80 3.85
147 148 4.740822 GGCACAATCCCCACGGCT 62.741 66.667 0.00 0.00 0.00 5.52
148 149 3.443045 GCACAATCCCCACGGCTG 61.443 66.667 0.00 0.00 0.00 4.85
149 150 2.034066 CACAATCCCCACGGCTGT 59.966 61.111 0.00 0.00 0.00 4.40
150 151 2.034066 ACAATCCCCACGGCTGTG 59.966 61.111 19.25 19.25 46.00 3.66
162 163 4.303257 GCTGTGGCCTCCTGTAAC 57.697 61.111 3.32 0.00 0.00 2.50
163 164 1.741770 GCTGTGGCCTCCTGTAACG 60.742 63.158 3.32 0.00 0.00 3.18
164 165 1.671742 CTGTGGCCTCCTGTAACGT 59.328 57.895 3.32 0.00 0.00 3.99
165 166 0.034896 CTGTGGCCTCCTGTAACGTT 59.965 55.000 5.88 5.88 0.00 3.99
166 167 1.274167 CTGTGGCCTCCTGTAACGTTA 59.726 52.381 3.32 3.29 0.00 3.18
167 168 1.903860 TGTGGCCTCCTGTAACGTTAT 59.096 47.619 11.86 0.00 0.00 1.89
168 169 3.098377 TGTGGCCTCCTGTAACGTTATA 58.902 45.455 11.86 8.00 0.00 0.98
169 170 3.707611 TGTGGCCTCCTGTAACGTTATAT 59.292 43.478 11.86 0.00 0.00 0.86
170 171 4.162698 TGTGGCCTCCTGTAACGTTATATT 59.837 41.667 11.86 0.00 0.00 1.28
171 172 5.121105 GTGGCCTCCTGTAACGTTATATTT 58.879 41.667 11.86 0.00 0.00 1.40
172 173 5.235831 GTGGCCTCCTGTAACGTTATATTTC 59.764 44.000 11.86 0.00 0.00 2.17
173 174 4.753610 GGCCTCCTGTAACGTTATATTTCC 59.246 45.833 11.86 4.13 0.00 3.13
174 175 4.753610 GCCTCCTGTAACGTTATATTTCCC 59.246 45.833 11.86 0.00 0.00 3.97
175 176 5.303165 CCTCCTGTAACGTTATATTTCCCC 58.697 45.833 11.86 0.00 0.00 4.81
176 177 5.294734 TCCTGTAACGTTATATTTCCCCC 57.705 43.478 11.86 0.00 0.00 5.40
193 194 1.488393 CCCCAGTCTCATTCCTTCTCC 59.512 57.143 0.00 0.00 0.00 3.71
226 227 6.415573 ACACTAAACTTCCCACCATCTAATC 58.584 40.000 0.00 0.00 0.00 1.75
228 229 7.056635 CACTAAACTTCCCACCATCTAATCAT 58.943 38.462 0.00 0.00 0.00 2.45
231 232 7.881775 AAACTTCCCACCATCTAATCATAAC 57.118 36.000 0.00 0.00 0.00 1.89
233 234 6.595682 ACTTCCCACCATCTAATCATAACAG 58.404 40.000 0.00 0.00 0.00 3.16
237 238 4.758674 CCACCATCTAATCATAACAGCCAG 59.241 45.833 0.00 0.00 0.00 4.85
250 251 1.284198 ACAGCCAGATGAGCCTTCAAT 59.716 47.619 0.00 0.00 36.78 2.57
251 252 2.291411 ACAGCCAGATGAGCCTTCAATT 60.291 45.455 0.00 0.00 36.78 2.32
252 253 2.758979 CAGCCAGATGAGCCTTCAATTT 59.241 45.455 0.00 0.00 36.78 1.82
311 312 4.902443 TGTATTTCAACAGAAACGGCAA 57.098 36.364 0.00 0.00 34.36 4.52
326 327 2.431057 ACGGCAATTTTGTGTTTACCCA 59.569 40.909 0.00 0.00 0.00 4.51
328 329 3.871594 CGGCAATTTTGTGTTTACCCAAA 59.128 39.130 0.00 0.00 0.00 3.28
353 354 5.179929 CGATGGCAAAGATAATGCTCACATA 59.820 40.000 0.00 0.00 43.34 2.29
354 355 5.756195 TGGCAAAGATAATGCTCACATAC 57.244 39.130 0.00 0.00 43.34 2.39
355 356 4.580167 TGGCAAAGATAATGCTCACATACC 59.420 41.667 0.00 0.00 43.34 2.73
356 357 4.580167 GGCAAAGATAATGCTCACATACCA 59.420 41.667 0.00 0.00 43.34 3.25
357 358 5.506317 GGCAAAGATAATGCTCACATACCAC 60.506 44.000 0.00 0.00 43.34 4.16
360 361 7.012327 GCAAAGATAATGCTCACATACCACTAA 59.988 37.037 0.00 0.00 40.64 2.24
361 362 8.554528 CAAAGATAATGCTCACATACCACTAAG 58.445 37.037 0.00 0.00 34.62 2.18
363 364 8.023021 AGATAATGCTCACATACCACTAAGAA 57.977 34.615 0.00 0.00 34.62 2.52
365 366 9.109393 GATAATGCTCACATACCACTAAGAAAA 57.891 33.333 0.00 0.00 34.62 2.29
400 401 6.627731 GCTCACATCAGGGTATCAGATATCTG 60.628 46.154 24.32 24.32 45.08 2.90
432 433 2.093764 GGAGACTCTGATGACCCAACTG 60.094 54.545 1.74 0.00 0.00 3.16
507 513 3.673599 GCTTCACCAGCCCACTTC 58.326 61.111 0.00 0.00 43.65 3.01
542 548 1.215647 CCACCCCTCTTCGTCTTCG 59.784 63.158 0.00 0.00 38.55 3.79
543 549 1.533469 CCACCCCTCTTCGTCTTCGT 61.533 60.000 0.00 0.00 38.33 3.85
545 551 0.251253 ACCCCTCTTCGTCTTCGTCT 60.251 55.000 0.00 0.00 38.33 4.18
565 572 5.749109 CGTCTTCAACCTGCTAGTATAAAGG 59.251 44.000 0.00 0.00 35.82 3.11
566 573 6.049790 GTCTTCAACCTGCTAGTATAAAGGG 58.950 44.000 0.00 0.00 33.87 3.95
567 574 5.962031 TCTTCAACCTGCTAGTATAAAGGGA 59.038 40.000 0.00 0.00 33.87 4.20
568 575 6.442564 TCTTCAACCTGCTAGTATAAAGGGAA 59.557 38.462 0.00 0.00 33.87 3.97
569 576 6.235231 TCAACCTGCTAGTATAAAGGGAAG 57.765 41.667 0.00 0.00 33.87 3.46
570 577 5.724854 TCAACCTGCTAGTATAAAGGGAAGT 59.275 40.000 0.00 0.00 33.87 3.01
571 578 6.899075 TCAACCTGCTAGTATAAAGGGAAGTA 59.101 38.462 0.00 0.00 33.87 2.24
572 579 6.728089 ACCTGCTAGTATAAAGGGAAGTAC 57.272 41.667 0.00 0.00 33.87 2.73
573 580 5.601729 ACCTGCTAGTATAAAGGGAAGTACC 59.398 44.000 0.00 0.00 33.87 3.34
719 731 2.415962 TTTGGCCCCTCTCCTCTCCA 62.416 60.000 0.00 0.00 0.00 3.86
720 732 2.766229 GGCCCCTCTCCTCTCCAC 60.766 72.222 0.00 0.00 0.00 4.02
722 734 2.041405 CCCCTCTCCTCTCCACCC 60.041 72.222 0.00 0.00 0.00 4.61
783 817 0.737219 GGCATTGACCACTCATCAGC 59.263 55.000 0.00 0.00 0.00 4.26
857 907 2.259511 GCTTGGGCTTTTCTGCGG 59.740 61.111 0.00 0.00 35.22 5.69
936 986 6.318648 CCATCATTGCAGCCTTTTTACTACTA 59.681 38.462 0.00 0.00 0.00 1.82
937 987 6.737254 TCATTGCAGCCTTTTTACTACTAC 57.263 37.500 0.00 0.00 0.00 2.73
938 988 6.472887 TCATTGCAGCCTTTTTACTACTACT 58.527 36.000 0.00 0.00 0.00 2.57
1026 1079 1.902508 TCTGTCCTTGAGGTGGATGTC 59.097 52.381 0.00 0.00 35.87 3.06
1078 1134 3.775654 CCGCCCGCCTCTTCTTCT 61.776 66.667 0.00 0.00 0.00 2.85
1079 1135 2.266055 CGCCCGCCTCTTCTTCTT 59.734 61.111 0.00 0.00 0.00 2.52
1080 1136 1.811679 CGCCCGCCTCTTCTTCTTC 60.812 63.158 0.00 0.00 0.00 2.87
1081 1137 1.599576 GCCCGCCTCTTCTTCTTCT 59.400 57.895 0.00 0.00 0.00 2.85
1082 1138 0.035915 GCCCGCCTCTTCTTCTTCTT 60.036 55.000 0.00 0.00 0.00 2.52
1083 1139 2.009542 GCCCGCCTCTTCTTCTTCTTC 61.010 57.143 0.00 0.00 0.00 2.87
1084 1140 1.552792 CCCGCCTCTTCTTCTTCTTCT 59.447 52.381 0.00 0.00 0.00 2.85
1085 1141 2.027653 CCCGCCTCTTCTTCTTCTTCTT 60.028 50.000 0.00 0.00 0.00 2.52
1086 1142 3.258228 CCGCCTCTTCTTCTTCTTCTTC 58.742 50.000 0.00 0.00 0.00 2.87
1087 1143 3.258228 CGCCTCTTCTTCTTCTTCTTCC 58.742 50.000 0.00 0.00 0.00 3.46
1088 1144 3.056179 CGCCTCTTCTTCTTCTTCTTCCT 60.056 47.826 0.00 0.00 0.00 3.36
1089 1145 4.503910 GCCTCTTCTTCTTCTTCTTCCTC 58.496 47.826 0.00 0.00 0.00 3.71
1090 1146 4.622933 GCCTCTTCTTCTTCTTCTTCCTCC 60.623 50.000 0.00 0.00 0.00 4.30
1091 1147 4.777366 CCTCTTCTTCTTCTTCTTCCTCCT 59.223 45.833 0.00 0.00 0.00 3.69
1092 1148 5.105351 CCTCTTCTTCTTCTTCTTCCTCCTC 60.105 48.000 0.00 0.00 0.00 3.71
1093 1149 4.775253 TCTTCTTCTTCTTCTTCCTCCTCC 59.225 45.833 0.00 0.00 0.00 4.30
1094 1150 3.445987 TCTTCTTCTTCTTCCTCCTCCC 58.554 50.000 0.00 0.00 0.00 4.30
1095 1151 2.255770 TCTTCTTCTTCCTCCTCCCC 57.744 55.000 0.00 0.00 0.00 4.81
1101 1157 1.162951 TCTTCCTCCTCCCCCTCCTT 61.163 60.000 0.00 0.00 0.00 3.36
1117 1173 4.109693 TTCCCCAATTTCGCGCGC 62.110 61.111 27.95 23.91 0.00 6.86
1121 1177 2.875711 CCAATTTCGCGCGCCTTG 60.876 61.111 27.95 24.82 0.00 3.61
1194 1250 3.743396 CGTTTCTGTTTCTTCCTCTCCTG 59.257 47.826 0.00 0.00 0.00 3.86
1199 1255 2.567615 TGTTTCTTCCTCTCCTGTAGGC 59.432 50.000 0.00 0.00 33.84 3.93
1232 1288 2.893637 CTGCTGGTTTCTAGCGTGTAT 58.106 47.619 1.21 0.00 44.01 2.29
1235 1291 2.479049 GCTGGTTTCTAGCGTGTATCGA 60.479 50.000 0.00 0.00 42.86 3.59
1241 1297 3.637998 TCTAGCGTGTATCGAATTCCC 57.362 47.619 0.00 0.00 42.86 3.97
1242 1298 2.953648 TCTAGCGTGTATCGAATTCCCA 59.046 45.455 0.00 0.00 42.86 4.37
1265 1321 3.304030 AGGTCTAGCCTCTCTCTAGGGG 61.304 59.091 0.00 0.00 46.96 4.79
1266 1322 1.074889 GTCTAGCCTCTCTCTAGGGGG 59.925 61.905 0.00 0.00 44.57 5.40
1268 1324 4.286447 GCCTCTCTCTAGGGGGTG 57.714 66.667 0.00 0.00 44.57 4.61
1269 1325 1.621377 GCCTCTCTCTAGGGGGTGA 59.379 63.158 0.00 0.00 44.57 4.02
1336 1403 2.354259 CTTGTTGCTTCCTCTGGCTAG 58.646 52.381 0.00 0.00 0.00 3.42
1354 1421 4.098914 CTAGATCAGCTCAGGTAGGACT 57.901 50.000 0.00 0.00 0.00 3.85
1355 1422 5.235850 CTAGATCAGCTCAGGTAGGACTA 57.764 47.826 0.00 0.00 0.00 2.59
1426 1493 4.100808 GCATCTACCCTCTGACATTTCTCT 59.899 45.833 0.00 0.00 0.00 3.10
1469 1536 0.319405 TTCCTTTTCGACCTCCCGAC 59.681 55.000 0.00 0.00 38.39 4.79
1507 1574 2.158652 CCATCTCCATCTCCAGTTGCAT 60.159 50.000 0.00 0.00 0.00 3.96
1518 1585 0.523072 CAGTTGCATTTGGTCTCGGG 59.477 55.000 0.00 0.00 0.00 5.14
1548 1615 2.286418 GGCGAGTGTTTCTTGTCACTTG 60.286 50.000 7.84 7.84 43.64 3.16
1575 1642 1.700186 GTTCCCTTCCCAACTCAGAGT 59.300 52.381 0.00 0.00 0.00 3.24
1649 1731 0.733150 GACTAAAATCACCGCCCTGC 59.267 55.000 0.00 0.00 0.00 4.85
1724 1820 9.177304 GAACTGTAAATTTTAACCTTTCCTTCG 57.823 33.333 0.00 0.00 0.00 3.79
1745 1841 1.538075 GGAAGGAGTCTCGATCGATCC 59.462 57.143 22.96 22.96 0.00 3.36
1748 1844 0.239879 GGAGTCTCGATCGATCCTGC 59.760 60.000 23.08 19.52 0.00 4.85
1797 1893 5.178096 TCCATTCCATTAAACTGCAGAGA 57.822 39.130 23.35 1.27 0.00 3.10
1890 1986 0.462759 CATTGCCGGTCCTTCTCCTC 60.463 60.000 1.90 0.00 0.00 3.71
1964 2060 4.828925 GGTGCCTCTGCTCTCGCC 62.829 72.222 0.00 0.00 38.71 5.54
1966 2062 2.999648 TGCCTCTGCTCTCGCCTT 61.000 61.111 0.00 0.00 38.71 4.35
1968 2064 2.977178 CCTCTGCTCTCGCCTTGT 59.023 61.111 0.00 0.00 34.43 3.16
1969 2065 1.153667 CCTCTGCTCTCGCCTTGTC 60.154 63.158 0.00 0.00 34.43 3.18
1970 2066 1.515952 CTCTGCTCTCGCCTTGTCG 60.516 63.158 0.00 0.00 34.43 4.35
1971 2067 3.184683 CTGCTCTCGCCTTGTCGC 61.185 66.667 0.00 0.00 34.43 5.19
2134 2231 8.188139 TCGCCATTAAAAAGATTAGATTGTTCC 58.812 33.333 0.00 0.00 0.00 3.62
2259 2356 4.017808 CGCTAGTACCCCTGCTAATCTAT 58.982 47.826 0.00 0.00 0.00 1.98
2282 2379 2.791158 CGTGGCGTGCTTCATTAATTCC 60.791 50.000 0.00 0.00 0.00 3.01
2290 2387 4.036262 GTGCTTCATTAATTCCATGGCGTA 59.964 41.667 6.96 0.00 0.00 4.42
2366 2463 2.831333 CAGGATCAAGAATCTGTCCGG 58.169 52.381 0.00 0.00 34.56 5.14
2546 2643 1.475751 GGCACAGTACATGGAGATGGG 60.476 57.143 0.00 0.00 33.39 4.00
2673 2782 2.186384 CAGAGCCTCTTCCCGCTG 59.814 66.667 0.00 0.00 34.84 5.18
2679 2788 4.521062 CTCTTCCCGCTGGCCGAG 62.521 72.222 0.00 0.00 40.02 4.63
2990 3099 2.507992 CAGCGCCGAGGACAAGAG 60.508 66.667 2.29 0.00 0.00 2.85
3282 3391 1.492993 GGAGGCTGAAGAAGGTGGGT 61.493 60.000 0.00 0.00 0.00 4.51
3295 3404 1.078143 GTGGGTGAGCTCATGGACC 60.078 63.158 21.47 19.07 0.00 4.46
3354 3463 2.811317 GCCAGGTTCGTCGAGCTG 60.811 66.667 9.04 11.70 43.07 4.24
3511 3620 4.022935 ACATTGATTGCTCGAGCTGAAAAA 60.023 37.500 35.27 22.30 42.66 1.94
3657 3766 2.852075 ACCAACTCCGGCTTCCCA 60.852 61.111 0.00 0.00 0.00 4.37
3939 4048 1.203928 GGATGAAGACGCAGATGACG 58.796 55.000 0.00 0.00 0.00 4.35
4083 4198 2.213499 CAGCGTCCTGTTTTCTGTTCT 58.787 47.619 0.00 0.00 34.31 3.01
4084 4199 2.614057 CAGCGTCCTGTTTTCTGTTCTT 59.386 45.455 0.00 0.00 34.31 2.52
4168 4287 1.529309 GGTGGAGCTGGGGAATCTC 59.471 63.158 0.00 0.00 0.00 2.75
4177 4296 2.751806 GCTGGGGAATCTCTTCTTGTTG 59.248 50.000 0.00 0.00 0.00 3.33
4279 4399 4.748277 TTTAGGGTACTGACTATGCCAC 57.252 45.455 0.00 0.00 0.00 5.01
4285 4405 0.246635 ACTGACTATGCCACGACCAC 59.753 55.000 0.00 0.00 0.00 4.16
4552 4680 1.000283 CCTCTGACCGTCTGATATGGC 60.000 57.143 8.41 0.00 37.86 4.40
4554 4682 1.957177 TCTGACCGTCTGATATGGCTC 59.043 52.381 4.11 0.00 37.86 4.70
4671 4799 9.342308 TGAGAGACTAAAACAAGATTTGAATGT 57.658 29.630 0.00 0.00 0.00 2.71
4703 4831 2.751436 CCAACCTCCCGCATGTGG 60.751 66.667 18.88 18.88 0.00 4.17
4705 4833 1.603455 CAACCTCCCGCATGTGGTT 60.603 57.895 23.44 8.71 41.49 3.67
4706 4834 1.603455 AACCTCCCGCATGTGGTTG 60.603 57.895 23.44 14.81 39.83 3.77
4711 4839 0.249120 TCCCGCATGTGGTTGTCTAG 59.751 55.000 23.44 6.83 0.00 2.43
4712 4840 0.036388 CCCGCATGTGGTTGTCTAGT 60.036 55.000 23.44 0.00 0.00 2.57
4713 4841 1.359848 CCGCATGTGGTTGTCTAGTC 58.640 55.000 17.59 0.00 0.00 2.59
4714 4842 1.337728 CCGCATGTGGTTGTCTAGTCA 60.338 52.381 17.59 0.00 0.00 3.41
4715 4843 2.621338 CGCATGTGGTTGTCTAGTCAT 58.379 47.619 0.00 0.00 0.00 3.06
4716 4844 2.349580 CGCATGTGGTTGTCTAGTCATG 59.650 50.000 0.00 0.00 36.68 3.07
4717 4845 2.096496 GCATGTGGTTGTCTAGTCATGC 59.904 50.000 11.14 11.14 46.50 4.06
4718 4846 3.603532 CATGTGGTTGTCTAGTCATGCT 58.396 45.455 0.00 0.00 0.00 3.79
4719 4847 3.769739 TGTGGTTGTCTAGTCATGCTT 57.230 42.857 0.00 0.00 0.00 3.91
4720 4848 3.664107 TGTGGTTGTCTAGTCATGCTTC 58.336 45.455 0.00 0.00 0.00 3.86
4721 4849 3.003480 GTGGTTGTCTAGTCATGCTTCC 58.997 50.000 0.00 0.00 0.00 3.46
4722 4850 2.271800 GGTTGTCTAGTCATGCTTCCG 58.728 52.381 0.00 0.00 0.00 4.30
4778 4918 6.830912 TGCTTCCAGTTACAGCAGAATATAT 58.169 36.000 0.00 0.00 38.65 0.86
4810 4950 4.357918 TTCTAGCTCACCTTTTGCTTCT 57.642 40.909 0.00 0.00 38.15 2.85
4840 4980 5.945155 TGATATAAACTTTTTGTGCCGGAC 58.055 37.500 5.05 0.46 0.00 4.79
4868 5008 6.473397 AGTTTCTAAACTCGAGCTCAAATG 57.527 37.500 13.61 2.70 45.65 2.32
4869 5009 4.928661 TTCTAAACTCGAGCTCAAATGC 57.071 40.909 13.61 0.00 0.00 3.56
4870 5010 5.106908 GTTTCTAAACTCGAGCTCAAATGCT 60.107 40.000 13.61 0.00 39.72 3.79
4871 5011 6.887394 GTTTCTAAACTCGAGCTCAAATGCTC 60.887 42.308 13.61 6.45 43.60 4.26
4872 5012 9.664414 GTTTCTAAACTCGAGCTCAAATGCTCC 62.664 44.444 13.61 0.00 43.83 4.70
4886 5026 2.857186 TGCTCCTGCATGAACAGTAA 57.143 45.000 0.00 0.00 45.31 2.24
4887 5027 2.703416 TGCTCCTGCATGAACAGTAAG 58.297 47.619 0.00 0.00 45.31 2.34
4888 5028 2.038952 TGCTCCTGCATGAACAGTAAGT 59.961 45.455 0.00 0.00 45.31 2.24
4889 5029 3.077359 GCTCCTGCATGAACAGTAAGTT 58.923 45.455 0.00 0.00 40.40 2.66
4890 5030 3.126000 GCTCCTGCATGAACAGTAAGTTC 59.874 47.826 0.00 1.23 46.40 3.01
4949 5089 9.868277 ATGTGACAAACTTTAAAGAATGTTTGA 57.132 25.926 25.49 15.49 31.90 2.69
4950 5090 9.698309 TGTGACAAACTTTAAAGAATGTTTGAA 57.302 25.926 25.49 15.83 31.90 2.69
4952 5092 9.921637 TGACAAACTTTAAAGAATGTTTGAAGT 57.078 25.926 25.49 7.12 39.07 3.01
4954 5094 9.705290 ACAAACTTTAAAGAATGTTTGAAGTGT 57.295 25.926 25.49 5.76 37.97 3.55
4983 5123 7.496704 AAAAATTCATCACGAAATCACATCG 57.503 32.000 0.00 0.00 45.47 3.84
4984 5124 4.801147 ATTCATCACGAAATCACATCGG 57.199 40.909 0.00 0.00 44.32 4.18
4985 5125 3.245518 TCATCACGAAATCACATCGGT 57.754 42.857 0.00 0.00 44.32 4.69
4986 5126 2.929398 TCATCACGAAATCACATCGGTG 59.071 45.455 0.00 0.00 44.32 4.94
4987 5127 1.075542 TCACGAAATCACATCGGTGC 58.924 50.000 0.00 0.00 44.87 5.01
4988 5128 0.795698 CACGAAATCACATCGGTGCA 59.204 50.000 0.00 0.00 44.87 4.57
4989 5129 1.196581 CACGAAATCACATCGGTGCAA 59.803 47.619 0.00 0.00 44.87 4.08
4990 5130 1.464608 ACGAAATCACATCGGTGCAAG 59.535 47.619 0.00 0.00 44.87 4.01
4991 5131 1.202065 CGAAATCACATCGGTGCAAGG 60.202 52.381 0.00 0.00 44.87 3.61
4992 5132 0.527565 AAATCACATCGGTGCAAGGC 59.472 50.000 0.00 0.00 44.87 4.35
4993 5133 1.647545 AATCACATCGGTGCAAGGCG 61.648 55.000 0.00 0.00 44.87 5.52
4994 5134 2.803155 ATCACATCGGTGCAAGGCGT 62.803 55.000 0.00 0.00 44.87 5.68
4995 5135 3.049674 ACATCGGTGCAAGGCGTG 61.050 61.111 0.00 0.00 0.00 5.34
4996 5136 3.803082 CATCGGTGCAAGGCGTGG 61.803 66.667 1.91 0.00 0.00 4.94
4997 5137 4.329545 ATCGGTGCAAGGCGTGGT 62.330 61.111 1.91 0.00 0.00 4.16
4998 5138 2.949909 ATCGGTGCAAGGCGTGGTA 61.950 57.895 1.91 0.00 0.00 3.25
4999 5139 2.457743 ATCGGTGCAAGGCGTGGTAA 62.458 55.000 1.91 0.00 0.00 2.85
5000 5140 2.255172 CGGTGCAAGGCGTGGTAAA 61.255 57.895 1.91 0.00 0.00 2.01
5001 5141 1.787057 CGGTGCAAGGCGTGGTAAAA 61.787 55.000 1.91 0.00 0.00 1.52
5002 5142 0.386113 GGTGCAAGGCGTGGTAAAAA 59.614 50.000 1.91 0.00 0.00 1.94
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 2.027561 TCATAGGTTGGACCCGTTTCTG 60.028 50.000 0.00 0.00 39.75 3.02
1 2 2.027469 GTCATAGGTTGGACCCGTTTCT 60.027 50.000 0.00 0.00 39.75 2.52
2 3 2.289819 TGTCATAGGTTGGACCCGTTTC 60.290 50.000 0.00 0.00 39.75 2.78
3 4 1.700739 TGTCATAGGTTGGACCCGTTT 59.299 47.619 0.00 0.00 39.75 3.60
4 5 1.354101 TGTCATAGGTTGGACCCGTT 58.646 50.000 0.00 0.00 39.75 4.44
5 6 1.580059 ATGTCATAGGTTGGACCCGT 58.420 50.000 0.00 0.00 39.75 5.28
6 7 2.561569 GAATGTCATAGGTTGGACCCG 58.438 52.381 0.00 0.00 39.75 5.28
7 8 2.241176 TGGAATGTCATAGGTTGGACCC 59.759 50.000 0.00 0.00 39.75 4.46
8 9 3.054361 ACTGGAATGTCATAGGTTGGACC 60.054 47.826 0.00 0.00 38.99 4.46
9 10 4.222124 ACTGGAATGTCATAGGTTGGAC 57.778 45.455 0.00 0.00 34.63 4.02
10 11 4.780554 TGTACTGGAATGTCATAGGTTGGA 59.219 41.667 0.00 0.00 0.00 3.53
11 12 5.097742 TGTACTGGAATGTCATAGGTTGG 57.902 43.478 0.00 0.00 0.00 3.77
12 13 7.987458 AGTAATGTACTGGAATGTCATAGGTTG 59.013 37.037 0.00 0.00 37.69 3.77
13 14 8.090788 AGTAATGTACTGGAATGTCATAGGTT 57.909 34.615 0.00 0.00 37.69 3.50
14 15 7.676683 AGTAATGTACTGGAATGTCATAGGT 57.323 36.000 0.00 0.00 37.69 3.08
28 29 6.038936 GGTGTGTTTGGTTTCAGTAATGTACT 59.961 38.462 0.00 0.00 40.28 2.73
29 30 6.203647 GGTGTGTTTGGTTTCAGTAATGTAC 58.796 40.000 0.00 0.00 0.00 2.90
30 31 5.299782 GGGTGTGTTTGGTTTCAGTAATGTA 59.700 40.000 0.00 0.00 0.00 2.29
31 32 4.098807 GGGTGTGTTTGGTTTCAGTAATGT 59.901 41.667 0.00 0.00 0.00 2.71
32 33 4.340950 AGGGTGTGTTTGGTTTCAGTAATG 59.659 41.667 0.00 0.00 0.00 1.90
33 34 4.542697 AGGGTGTGTTTGGTTTCAGTAAT 58.457 39.130 0.00 0.00 0.00 1.89
34 35 3.970842 AGGGTGTGTTTGGTTTCAGTAA 58.029 40.909 0.00 0.00 0.00 2.24
35 36 3.655615 AGGGTGTGTTTGGTTTCAGTA 57.344 42.857 0.00 0.00 0.00 2.74
36 37 2.525105 AGGGTGTGTTTGGTTTCAGT 57.475 45.000 0.00 0.00 0.00 3.41
37 38 4.204012 TCTAAGGGTGTGTTTGGTTTCAG 58.796 43.478 0.00 0.00 0.00 3.02
38 39 4.237976 TCTAAGGGTGTGTTTGGTTTCA 57.762 40.909 0.00 0.00 0.00 2.69
39 40 5.784578 ATTCTAAGGGTGTGTTTGGTTTC 57.215 39.130 0.00 0.00 0.00 2.78
40 41 6.040054 GTGTATTCTAAGGGTGTGTTTGGTTT 59.960 38.462 0.00 0.00 0.00 3.27
41 42 5.533528 GTGTATTCTAAGGGTGTGTTTGGTT 59.466 40.000 0.00 0.00 0.00 3.67
42 43 5.067954 GTGTATTCTAAGGGTGTGTTTGGT 58.932 41.667 0.00 0.00 0.00 3.67
43 44 5.181245 CAGTGTATTCTAAGGGTGTGTTTGG 59.819 44.000 0.00 0.00 0.00 3.28
44 45 5.763204 ACAGTGTATTCTAAGGGTGTGTTTG 59.237 40.000 0.00 0.00 0.00 2.93
45 46 5.763204 CACAGTGTATTCTAAGGGTGTGTTT 59.237 40.000 0.00 0.00 31.47 2.83
46 47 5.163237 ACACAGTGTATTCTAAGGGTGTGTT 60.163 40.000 3.69 0.00 43.53 3.32
47 48 4.347000 ACACAGTGTATTCTAAGGGTGTGT 59.653 41.667 3.69 0.00 41.77 3.72
48 49 4.894784 ACACAGTGTATTCTAAGGGTGTG 58.105 43.478 3.69 0.00 39.91 3.82
49 50 6.869206 ATACACAGTGTATTCTAAGGGTGT 57.131 37.500 19.01 0.00 40.40 4.16
50 51 9.909644 GTATATACACAGTGTATTCTAAGGGTG 57.090 37.037 27.51 0.00 40.40 4.61
51 52 9.086758 GGTATATACACAGTGTATTCTAAGGGT 57.913 37.037 27.51 7.14 40.40 4.34
52 53 8.242053 CGGTATATACACAGTGTATTCTAAGGG 58.758 40.741 27.51 10.63 40.40 3.95
53 54 8.790718 ACGGTATATACACAGTGTATTCTAAGG 58.209 37.037 27.51 16.24 40.40 2.69
56 57 9.777297 TGTACGGTATATACACAGTGTATTCTA 57.223 33.333 27.51 17.60 40.40 2.10
57 58 8.681486 TGTACGGTATATACACAGTGTATTCT 57.319 34.615 27.51 18.45 40.40 2.40
58 59 9.173939 GTTGTACGGTATATACACAGTGTATTC 57.826 37.037 27.51 18.27 40.40 1.75
59 60 8.685427 TGTTGTACGGTATATACACAGTGTATT 58.315 33.333 27.51 18.11 40.40 1.89
60 61 8.224389 TGTTGTACGGTATATACACAGTGTAT 57.776 34.615 26.01 26.01 44.89 2.29
61 62 7.622893 TGTTGTACGGTATATACACAGTGTA 57.377 36.000 15.90 15.90 37.24 2.90
62 63 6.513806 TGTTGTACGGTATATACACAGTGT 57.486 37.500 11.87 11.87 32.30 3.55
63 64 9.124807 CATATGTTGTACGGTATATACACAGTG 57.875 37.037 14.70 0.00 32.30 3.66
64 65 8.853126 ACATATGTTGTACGGTATATACACAGT 58.147 33.333 14.70 12.58 36.57 3.55
73 74 9.081204 TGACCTAATACATATGTTGTACGGTAT 57.919 33.333 14.77 0.00 43.46 2.73
74 75 8.462589 TGACCTAATACATATGTTGTACGGTA 57.537 34.615 14.77 0.00 43.46 4.02
75 76 7.350744 TGACCTAATACATATGTTGTACGGT 57.649 36.000 14.77 13.72 43.46 4.83
76 77 7.170320 GGTTGACCTAATACATATGTTGTACGG 59.830 40.741 14.77 10.79 43.46 4.02
77 78 7.096353 CGGTTGACCTAATACATATGTTGTACG 60.096 40.741 14.77 2.27 43.46 3.67
78 79 7.707893 ACGGTTGACCTAATACATATGTTGTAC 59.292 37.037 14.77 1.10 43.46 2.90
79 80 7.784037 ACGGTTGACCTAATACATATGTTGTA 58.216 34.615 14.77 5.90 44.71 2.41
80 81 6.646267 ACGGTTGACCTAATACATATGTTGT 58.354 36.000 14.77 4.97 42.62 3.32
81 82 7.065324 ACAACGGTTGACCTAATACATATGTTG 59.935 37.037 26.39 2.71 37.18 3.33
82 83 7.107542 ACAACGGTTGACCTAATACATATGTT 58.892 34.615 26.39 0.00 0.00 2.71
83 84 6.646267 ACAACGGTTGACCTAATACATATGT 58.354 36.000 26.39 13.93 0.00 2.29
84 85 7.096353 CGTACAACGGTTGACCTAATACATATG 60.096 40.741 26.39 0.00 38.08 1.78
85 86 6.919662 CGTACAACGGTTGACCTAATACATAT 59.080 38.462 26.39 2.74 38.08 1.78
86 87 6.264832 CGTACAACGGTTGACCTAATACATA 58.735 40.000 26.39 2.48 38.08 2.29
87 88 5.104374 CGTACAACGGTTGACCTAATACAT 58.896 41.667 26.39 3.44 38.08 2.29
88 89 4.484236 CGTACAACGGTTGACCTAATACA 58.516 43.478 26.39 0.00 38.08 2.29
103 104 4.464043 CGCGCTCGCACGTACAAC 62.464 66.667 14.80 0.00 42.06 3.32
104 105 4.986587 ACGCGCTCGCACGTACAA 62.987 61.111 5.73 0.00 41.48 2.41
119 120 3.605749 ATTGTGCCCCGGTCAGACG 62.606 63.158 0.00 0.00 0.00 4.18
120 121 1.745489 GATTGTGCCCCGGTCAGAC 60.745 63.158 0.00 0.00 0.00 3.51
121 122 2.668632 GATTGTGCCCCGGTCAGA 59.331 61.111 0.00 0.00 0.00 3.27
122 123 2.438434 GGATTGTGCCCCGGTCAG 60.438 66.667 0.00 0.00 0.00 3.51
123 124 4.041762 GGGATTGTGCCCCGGTCA 62.042 66.667 0.00 0.00 42.62 4.02
130 131 4.740822 AGCCGTGGGGATTGTGCC 62.741 66.667 0.00 0.00 34.06 5.01
131 132 3.443045 CAGCCGTGGGGATTGTGC 61.443 66.667 0.00 0.00 34.06 4.57
132 133 2.034066 ACAGCCGTGGGGATTGTG 59.966 61.111 0.00 0.00 33.17 3.33
133 134 2.034066 CACAGCCGTGGGGATTGT 59.966 61.111 0.00 0.00 39.64 2.71
145 146 1.741770 CGTTACAGGAGGCCACAGC 60.742 63.158 5.01 0.00 38.76 4.40
146 147 0.034896 AACGTTACAGGAGGCCACAG 59.965 55.000 5.01 0.00 0.00 3.66
147 148 1.340088 TAACGTTACAGGAGGCCACA 58.660 50.000 5.01 0.00 0.00 4.17
148 149 2.685850 ATAACGTTACAGGAGGCCAC 57.314 50.000 10.81 0.00 0.00 5.01
149 150 5.362105 AAATATAACGTTACAGGAGGCCA 57.638 39.130 10.81 0.00 0.00 5.36
150 151 4.753610 GGAAATATAACGTTACAGGAGGCC 59.246 45.833 10.81 0.00 0.00 5.19
151 152 4.753610 GGGAAATATAACGTTACAGGAGGC 59.246 45.833 10.81 0.00 0.00 4.70
152 153 5.303165 GGGGAAATATAACGTTACAGGAGG 58.697 45.833 10.81 0.00 0.00 4.30
153 154 5.163280 TGGGGGAAATATAACGTTACAGGAG 60.163 44.000 10.81 0.00 0.00 3.69
154 155 4.720773 TGGGGGAAATATAACGTTACAGGA 59.279 41.667 10.81 0.00 0.00 3.86
155 156 5.038651 TGGGGGAAATATAACGTTACAGG 57.961 43.478 10.81 0.00 0.00 4.00
156 157 5.677567 ACTGGGGGAAATATAACGTTACAG 58.322 41.667 10.81 11.90 0.00 2.74
157 158 5.426185 AGACTGGGGGAAATATAACGTTACA 59.574 40.000 10.81 0.00 0.00 2.41
158 159 5.922053 AGACTGGGGGAAATATAACGTTAC 58.078 41.667 10.81 0.00 0.00 2.50
159 160 5.662208 TGAGACTGGGGGAAATATAACGTTA 59.338 40.000 11.02 11.02 0.00 3.18
160 161 4.472108 TGAGACTGGGGGAAATATAACGTT 59.528 41.667 5.88 5.88 0.00 3.99
161 162 4.035112 TGAGACTGGGGGAAATATAACGT 58.965 43.478 0.00 0.00 0.00 3.99
162 163 4.682778 TGAGACTGGGGGAAATATAACG 57.317 45.455 0.00 0.00 0.00 3.18
163 164 6.004574 GGAATGAGACTGGGGGAAATATAAC 58.995 44.000 0.00 0.00 0.00 1.89
164 165 5.917087 AGGAATGAGACTGGGGGAAATATAA 59.083 40.000 0.00 0.00 0.00 0.98
165 166 5.486332 AGGAATGAGACTGGGGGAAATATA 58.514 41.667 0.00 0.00 0.00 0.86
166 167 4.319515 AGGAATGAGACTGGGGGAAATAT 58.680 43.478 0.00 0.00 0.00 1.28
167 168 3.747852 AGGAATGAGACTGGGGGAAATA 58.252 45.455 0.00 0.00 0.00 1.40
168 169 2.577970 AGGAATGAGACTGGGGGAAAT 58.422 47.619 0.00 0.00 0.00 2.17
169 170 2.059756 AGGAATGAGACTGGGGGAAA 57.940 50.000 0.00 0.00 0.00 3.13
170 171 1.916181 GAAGGAATGAGACTGGGGGAA 59.084 52.381 0.00 0.00 0.00 3.97
171 172 1.081174 AGAAGGAATGAGACTGGGGGA 59.919 52.381 0.00 0.00 0.00 4.81
172 173 1.488393 GAGAAGGAATGAGACTGGGGG 59.512 57.143 0.00 0.00 0.00 5.40
173 174 1.488393 GGAGAAGGAATGAGACTGGGG 59.512 57.143 0.00 0.00 0.00 4.96
174 175 1.488393 GGGAGAAGGAATGAGACTGGG 59.512 57.143 0.00 0.00 0.00 4.45
175 176 2.433970 GAGGGAGAAGGAATGAGACTGG 59.566 54.545 0.00 0.00 0.00 4.00
176 177 2.433970 GGAGGGAGAAGGAATGAGACTG 59.566 54.545 0.00 0.00 0.00 3.51
193 194 4.072839 GGGAAGTTTAGTGTTTGAGGAGG 58.927 47.826 0.00 0.00 0.00 4.30
226 227 2.634815 AGGCTCATCTGGCTGTTATG 57.365 50.000 0.00 0.00 41.44 1.90
228 229 1.908619 TGAAGGCTCATCTGGCTGTTA 59.091 47.619 0.00 0.00 42.20 2.41
231 232 2.054232 ATTGAAGGCTCATCTGGCTG 57.946 50.000 0.00 0.00 42.20 4.85
233 234 3.881937 AAAATTGAAGGCTCATCTGGC 57.118 42.857 0.00 0.00 0.00 4.85
276 277 5.708736 TGAAATACAGATGGGCTTTAGGA 57.291 39.130 0.00 0.00 0.00 2.94
326 327 4.398988 TGAGCATTATCTTTGCCATCGTTT 59.601 37.500 0.00 0.00 41.06 3.60
328 329 3.313526 GTGAGCATTATCTTTGCCATCGT 59.686 43.478 0.00 0.00 41.06 3.73
365 366 5.513233 ACCCTGATGTGAGCATTATCTTTT 58.487 37.500 0.00 0.00 35.07 2.27
367 368 4.785346 ACCCTGATGTGAGCATTATCTT 57.215 40.909 0.00 0.00 35.07 2.40
368 369 5.545335 TGATACCCTGATGTGAGCATTATCT 59.455 40.000 0.00 0.00 35.07 1.98
369 370 5.798132 TGATACCCTGATGTGAGCATTATC 58.202 41.667 0.00 0.00 35.07 1.75
370 371 5.545335 TCTGATACCCTGATGTGAGCATTAT 59.455 40.000 0.00 0.00 35.07 1.28
371 372 4.901250 TCTGATACCCTGATGTGAGCATTA 59.099 41.667 0.00 0.00 35.07 1.90
372 373 3.713248 TCTGATACCCTGATGTGAGCATT 59.287 43.478 0.00 0.00 35.07 3.56
374 375 2.750814 TCTGATACCCTGATGTGAGCA 58.249 47.619 0.00 0.00 0.00 4.26
375 376 5.421693 AGATATCTGATACCCTGATGTGAGC 59.578 44.000 3.89 0.00 35.46 4.26
376 377 6.865411 CAGATATCTGATACCCTGATGTGAG 58.135 44.000 25.78 0.00 46.59 3.51
377 378 6.847421 CAGATATCTGATACCCTGATGTGA 57.153 41.667 25.78 0.00 46.59 3.58
400 401 2.822561 TCAGAGTCTCCATGTGACACTC 59.177 50.000 15.43 12.54 34.16 3.51
418 419 4.161189 AGTGTATCTCAGTTGGGTCATCAG 59.839 45.833 0.00 0.00 0.00 2.90
419 420 4.096681 AGTGTATCTCAGTTGGGTCATCA 58.903 43.478 0.00 0.00 0.00 3.07
432 433 8.194104 TCTTGCATTAAGAAGAGAGTGTATCTC 58.806 37.037 0.00 0.00 45.80 2.75
453 454 0.590195 CAGTCCTTGTGCTGTCTTGC 59.410 55.000 0.00 0.00 0.00 4.01
504 510 6.377429 GGGTGGTTTTCTTTATAGGAAGGAAG 59.623 42.308 0.00 0.00 0.00 3.46
505 511 6.250711 GGGTGGTTTTCTTTATAGGAAGGAA 58.749 40.000 0.00 0.00 0.00 3.36
506 512 5.281349 GGGGTGGTTTTCTTTATAGGAAGGA 60.281 44.000 0.00 0.00 0.00 3.36
507 513 4.954202 GGGGTGGTTTTCTTTATAGGAAGG 59.046 45.833 0.00 0.00 0.00 3.46
542 548 6.049790 CCCTTTATACTAGCAGGTTGAAGAC 58.950 44.000 0.00 0.00 0.00 3.01
543 549 5.962031 TCCCTTTATACTAGCAGGTTGAAGA 59.038 40.000 0.00 0.00 0.00 2.87
545 551 6.214819 ACTTCCCTTTATACTAGCAGGTTGAA 59.785 38.462 0.00 0.00 0.00 2.69
565 572 1.558294 CCTTGGGTGGTAGGTACTTCC 59.442 57.143 0.00 0.00 46.75 3.46
566 573 2.543635 TCCTTGGGTGGTAGGTACTTC 58.456 52.381 0.00 0.00 41.75 3.01
567 574 2.727429 TCCTTGGGTGGTAGGTACTT 57.273 50.000 0.00 0.00 41.75 2.24
568 575 2.963654 ATCCTTGGGTGGTAGGTACT 57.036 50.000 0.00 0.00 46.37 2.73
569 576 3.377573 TGTATCCTTGGGTGGTAGGTAC 58.622 50.000 0.00 0.00 33.15 3.34
570 577 3.780516 TGTATCCTTGGGTGGTAGGTA 57.219 47.619 0.00 0.00 33.15 3.08
571 578 2.653543 TGTATCCTTGGGTGGTAGGT 57.346 50.000 0.00 0.00 33.15 3.08
572 579 4.597507 ACATATGTATCCTTGGGTGGTAGG 59.402 45.833 6.56 0.00 0.00 3.18
573 580 5.825593 ACATATGTATCCTTGGGTGGTAG 57.174 43.478 6.56 0.00 0.00 3.18
719 731 1.223487 GTGTGTGTGTGTGAGGGGT 59.777 57.895 0.00 0.00 0.00 4.95
720 732 1.095228 GTGTGTGTGTGTGTGAGGGG 61.095 60.000 0.00 0.00 0.00 4.79
722 734 0.726827 GTGTGTGTGTGTGTGTGAGG 59.273 55.000 0.00 0.00 0.00 3.86
783 817 1.138661 GATGCTCTGGGAGAGTCCTTG 59.861 57.143 2.68 0.00 44.12 3.61
875 925 3.142838 CAAAGGGGATGGCAGCGG 61.143 66.667 0.00 0.00 0.00 5.52
936 986 4.689062 TGGGAAAGAAGAGATGTAGGAGT 58.311 43.478 0.00 0.00 0.00 3.85
937 987 5.130145 ACATGGGAAAGAAGAGATGTAGGAG 59.870 44.000 0.00 0.00 0.00 3.69
938 988 5.032846 ACATGGGAAAGAAGAGATGTAGGA 58.967 41.667 0.00 0.00 0.00 2.94
1026 1079 4.598257 AAGACGGCTTCACCATCG 57.402 55.556 0.00 0.00 35.13 3.84
1060 1113 4.083862 GAAGAAGAGGCGGGCGGT 62.084 66.667 0.00 0.00 0.00 5.68
1078 1134 0.800239 AGGGGGAGGAGGAAGAAGAA 59.200 55.000 0.00 0.00 0.00 2.52
1079 1135 0.340208 GAGGGGGAGGAGGAAGAAGA 59.660 60.000 0.00 0.00 0.00 2.87
1080 1136 0.692756 GGAGGGGGAGGAGGAAGAAG 60.693 65.000 0.00 0.00 0.00 2.85
1081 1137 1.162951 AGGAGGGGGAGGAGGAAGAA 61.163 60.000 0.00 0.00 0.00 2.52
1082 1138 1.162951 AAGGAGGGGGAGGAGGAAGA 61.163 60.000 0.00 0.00 0.00 2.87
1083 1139 0.692756 GAAGGAGGGGGAGGAGGAAG 60.693 65.000 0.00 0.00 0.00 3.46
1084 1140 1.396594 GAAGGAGGGGGAGGAGGAA 59.603 63.158 0.00 0.00 0.00 3.36
1085 1141 2.647949 GGAAGGAGGGGGAGGAGGA 61.648 68.421 0.00 0.00 0.00 3.71
1086 1142 2.040359 GGAAGGAGGGGGAGGAGG 60.040 72.222 0.00 0.00 0.00 4.30
1087 1143 2.040359 GGGAAGGAGGGGGAGGAG 60.040 72.222 0.00 0.00 0.00 3.69
1088 1144 3.707189 GGGGAAGGAGGGGGAGGA 61.707 72.222 0.00 0.00 0.00 3.71
1089 1145 2.883316 ATTGGGGAAGGAGGGGGAGG 62.883 65.000 0.00 0.00 0.00 4.30
1090 1146 0.926220 AATTGGGGAAGGAGGGGGAG 60.926 60.000 0.00 0.00 0.00 4.30
1091 1147 0.481607 AAATTGGGGAAGGAGGGGGA 60.482 55.000 0.00 0.00 0.00 4.81
1092 1148 0.032117 GAAATTGGGGAAGGAGGGGG 60.032 60.000 0.00 0.00 0.00 5.40
1093 1149 0.395724 CGAAATTGGGGAAGGAGGGG 60.396 60.000 0.00 0.00 0.00 4.79
1094 1150 1.037579 GCGAAATTGGGGAAGGAGGG 61.038 60.000 0.00 0.00 0.00 4.30
1095 1151 1.376609 CGCGAAATTGGGGAAGGAGG 61.377 60.000 0.00 0.00 0.00 4.30
1117 1173 2.816672 GGAGGAAGAAGAACAAGCAAGG 59.183 50.000 0.00 0.00 0.00 3.61
1121 1177 2.816672 CCTTGGAGGAAGAAGAACAAGC 59.183 50.000 0.00 0.00 37.67 4.01
1126 1182 2.563179 CGAGACCTTGGAGGAAGAAGAA 59.437 50.000 0.07 0.00 37.67 2.52
1127 1183 2.171840 CGAGACCTTGGAGGAAGAAGA 58.828 52.381 0.07 0.00 37.67 2.87
1128 1184 2.171840 TCGAGACCTTGGAGGAAGAAG 58.828 52.381 0.07 0.00 37.67 2.85
1232 1288 2.032620 GCTAGACCTCTGGGAATTCGA 58.967 52.381 0.00 0.00 36.25 3.71
1257 1313 3.772025 GGATATGTCATCACCCCCTAGAG 59.228 52.174 0.00 0.00 0.00 2.43
1258 1314 3.406152 AGGATATGTCATCACCCCCTAGA 59.594 47.826 0.00 0.00 0.00 2.43
1259 1315 3.517100 CAGGATATGTCATCACCCCCTAG 59.483 52.174 0.00 0.00 0.00 3.02
1260 1316 3.520696 CAGGATATGTCATCACCCCCTA 58.479 50.000 0.00 0.00 0.00 3.53
1261 1317 2.342659 CAGGATATGTCATCACCCCCT 58.657 52.381 0.00 0.00 0.00 4.79
1263 1319 2.057922 ACCAGGATATGTCATCACCCC 58.942 52.381 0.00 0.00 0.00 4.95
1265 1321 2.705658 TCCACCAGGATATGTCATCACC 59.294 50.000 0.00 0.00 39.61 4.02
1266 1322 4.422073 TTCCACCAGGATATGTCATCAC 57.578 45.455 0.00 0.00 45.26 3.06
1267 1323 4.202493 CCATTCCACCAGGATATGTCATCA 60.202 45.833 0.00 0.00 45.26 3.07
1268 1324 4.042062 TCCATTCCACCAGGATATGTCATC 59.958 45.833 0.00 0.00 45.26 2.92
1269 1325 3.982730 TCCATTCCACCAGGATATGTCAT 59.017 43.478 0.00 0.00 45.26 3.06
1336 1403 4.947388 CCTATAGTCCTACCTGAGCTGATC 59.053 50.000 0.00 0.00 0.00 2.92
1381 1448 2.743126 CAAAAATTCTGGTACGCCCGTA 59.257 45.455 0.00 0.00 35.15 4.02
1384 1451 1.403647 GCCAAAAATTCTGGTACGCCC 60.404 52.381 8.03 0.00 36.24 6.13
1426 1493 3.191162 CGATGCAAGAGACCAAAAATGGA 59.809 43.478 1.10 0.00 0.00 3.41
1469 1536 0.250295 TGGAGACGAAACCAAGCAGG 60.250 55.000 0.00 0.00 45.67 4.85
1507 1574 1.758592 CAAGGACCCCGAGACCAAA 59.241 57.895 0.00 0.00 0.00 3.28
1518 1585 2.692273 AAACACTCGCCCCAAGGACC 62.692 60.000 0.00 0.00 33.47 4.46
1575 1642 3.008049 GCAGAAGGAACAGGGAGTAGAAA 59.992 47.826 0.00 0.00 0.00 2.52
1583 1650 1.672356 CACGGCAGAAGGAACAGGG 60.672 63.158 0.00 0.00 0.00 4.45
1585 1652 1.734465 GATTCACGGCAGAAGGAACAG 59.266 52.381 0.00 0.00 0.00 3.16
1649 1731 2.446435 CAAGAACATGTGGTTAGGGGG 58.554 52.381 0.00 0.00 40.63 5.40
1724 1820 1.538075 GATCGATCGAGACTCCTTCCC 59.462 57.143 23.84 0.00 0.00 3.97
1731 1827 1.945522 CGCAGGATCGATCGAGACT 59.054 57.895 23.84 19.48 0.00 3.24
1763 1859 1.077068 GAATGGATCCCACGCCCAA 60.077 57.895 9.90 0.00 35.80 4.12
1788 1884 3.084786 GGCCATTAAAACTCTCTGCAGT 58.915 45.455 14.67 0.00 0.00 4.40
1797 1893 1.269448 CACTGTGCGGCCATTAAAACT 59.731 47.619 2.24 0.00 0.00 2.66
1964 2060 3.044114 GAACGACGCGAGCGACAAG 62.044 63.158 26.71 13.25 42.83 3.16
2134 2231 2.433970 GGAGATCAGGTCCTTTCCAGAG 59.566 54.545 0.00 0.00 0.00 3.35
2259 2356 1.231296 TTAATGAAGCACGCCACGCA 61.231 50.000 0.00 0.00 0.00 5.24
2282 2379 2.209838 ATGAGAACGAGTACGCCATG 57.790 50.000 0.00 0.00 43.96 3.66
2290 2387 4.196193 TCCAACAACAAATGAGAACGAGT 58.804 39.130 0.00 0.00 0.00 4.18
2366 2463 3.151022 CTCCGACCAGCTCCTCCC 61.151 72.222 0.00 0.00 0.00 4.30
2589 2698 0.888619 TATCCTCCAGCGCCTTATCG 59.111 55.000 2.29 0.00 0.00 2.92
2721 2830 2.203451 GCAGGGATGGCCATCTGG 60.203 66.667 37.94 28.35 37.92 3.86
3282 3391 1.195115 GGTACAGGTCCATGAGCTCA 58.805 55.000 20.79 20.79 38.40 4.26
3488 3597 2.391616 TCAGCTCGAGCAATCAATGT 57.608 45.000 36.87 12.98 45.16 2.71
3512 3621 6.488683 TGAATGAACGGGACAGAGTTATTTTT 59.511 34.615 0.00 0.00 0.00 1.94
3513 3622 6.001460 TGAATGAACGGGACAGAGTTATTTT 58.999 36.000 0.00 0.00 0.00 1.82
3514 3623 5.556915 TGAATGAACGGGACAGAGTTATTT 58.443 37.500 0.00 0.00 0.00 1.40
3768 3877 2.507769 TCGTCGTAGCTCTCGCGA 60.508 61.111 9.26 9.26 42.32 5.87
3939 4048 4.865865 CGGGAGGCCTTCATCTTC 57.134 61.111 14.70 0.00 0.00 2.87
4107 4222 8.746052 ATCACCAGGAATCGATACATTAAAAA 57.254 30.769 0.00 0.00 0.00 1.94
4113 4228 5.551305 TCAATCACCAGGAATCGATACAT 57.449 39.130 0.00 0.00 0.00 2.29
4168 4287 4.274214 TGTTCACTGAGATGCAACAAGAAG 59.726 41.667 0.00 0.00 0.00 2.85
4177 4296 3.490155 CGATCATCTGTTCACTGAGATGC 59.510 47.826 0.00 0.00 43.60 3.91
4279 4399 1.654105 GTAGATTGCAAGACGTGGTCG 59.346 52.381 4.94 0.00 37.67 4.79
4285 4405 6.991485 ATTGTTTTTGTAGATTGCAAGACG 57.009 33.333 4.94 0.00 0.00 4.18
4289 4409 8.772705 GGATTGAATTGTTTTTGTAGATTGCAA 58.227 29.630 0.00 0.00 0.00 4.08
4552 4680 2.154854 TTGCCACTCAAAGTCTCGAG 57.845 50.000 5.93 5.93 35.30 4.04
4625 4753 4.947645 TCAAAGAGCATCCAAAAACCAAG 58.052 39.130 0.00 0.00 33.66 3.61
4627 4755 4.214310 TCTCAAAGAGCATCCAAAAACCA 58.786 39.130 0.00 0.00 33.66 3.67
4629 4757 5.240403 AGTCTCTCAAAGAGCATCCAAAAAC 59.760 40.000 0.00 0.00 42.04 2.43
4671 4799 0.463654 GTTGGACACTGCACACTCCA 60.464 55.000 0.00 0.00 0.00 3.86
4703 4831 2.271800 CCGGAAGCATGACTAGACAAC 58.728 52.381 0.00 0.00 0.00 3.32
4705 4833 1.557099 ACCGGAAGCATGACTAGACA 58.443 50.000 9.46 0.00 0.00 3.41
4706 4834 2.674796 AACCGGAAGCATGACTAGAC 57.325 50.000 9.46 0.00 0.00 2.59
4711 4839 3.500680 TGAAAAGTAACCGGAAGCATGAC 59.499 43.478 9.46 0.00 0.00 3.06
4712 4840 3.745799 TGAAAAGTAACCGGAAGCATGA 58.254 40.909 9.46 0.00 0.00 3.07
4713 4841 4.701956 ATGAAAAGTAACCGGAAGCATG 57.298 40.909 9.46 0.00 0.00 4.06
4714 4842 4.618227 GCAATGAAAAGTAACCGGAAGCAT 60.618 41.667 9.46 0.00 0.00 3.79
4715 4843 3.305064 GCAATGAAAAGTAACCGGAAGCA 60.305 43.478 9.46 0.00 0.00 3.91
4716 4844 3.242518 GCAATGAAAAGTAACCGGAAGC 58.757 45.455 9.46 0.00 0.00 3.86
4717 4845 4.497473 TGCAATGAAAAGTAACCGGAAG 57.503 40.909 9.46 0.00 0.00 3.46
4718 4846 5.461032 AATGCAATGAAAAGTAACCGGAA 57.539 34.783 9.46 0.00 0.00 4.30
4719 4847 5.221342 ACAAATGCAATGAAAAGTAACCGGA 60.221 36.000 9.46 0.00 0.00 5.14
4720 4848 4.987912 ACAAATGCAATGAAAAGTAACCGG 59.012 37.500 0.00 0.00 0.00 5.28
4721 4849 5.903703 CACAAATGCAATGAAAAGTAACCG 58.096 37.500 9.59 0.00 0.00 4.44
4778 4918 9.520515 AAAAGGTGAGCTAGAATTGAAGAATTA 57.479 29.630 0.00 0.00 31.58 1.40
4810 4950 6.644592 GCACAAAAAGTTTATATCAAGGCACA 59.355 34.615 0.00 0.00 0.00 4.57
4867 5007 3.496692 AACTTACTGTTCATGCAGGAGCA 60.497 43.478 16.99 16.99 45.30 4.26
4868 5008 2.704572 ACTTACTGTTCATGCAGGAGC 58.295 47.619 8.37 8.37 40.59 4.70
4923 5063 9.868277 TCAAACATTCTTTAAAGTTTGTCACAT 57.132 25.926 20.96 8.77 46.65 3.21
4924 5064 9.698309 TTCAAACATTCTTTAAAGTTTGTCACA 57.302 25.926 20.96 7.65 46.65 3.58
4926 5066 9.921637 ACTTCAAACATTCTTTAAAGTTTGTCA 57.078 25.926 20.96 13.11 46.65 3.58
4928 5068 9.705290 ACACTTCAAACATTCTTTAAAGTTTGT 57.295 25.926 20.96 18.34 46.65 2.83
4959 5099 6.527722 CCGATGTGATTTCGTGATGAATTTTT 59.472 34.615 0.00 0.00 36.22 1.94
4960 5100 6.029607 CCGATGTGATTTCGTGATGAATTTT 58.970 36.000 0.00 0.00 36.22 1.82
4961 5101 5.123820 ACCGATGTGATTTCGTGATGAATTT 59.876 36.000 0.00 0.00 36.22 1.82
4962 5102 4.635765 ACCGATGTGATTTCGTGATGAATT 59.364 37.500 0.00 0.00 36.22 2.17
4963 5103 4.034394 CACCGATGTGATTTCGTGATGAAT 59.966 41.667 0.00 0.00 45.76 2.57
4964 5104 3.370672 CACCGATGTGATTTCGTGATGAA 59.629 43.478 0.00 0.00 45.76 2.57
4965 5105 2.929398 CACCGATGTGATTTCGTGATGA 59.071 45.455 0.00 0.00 45.76 2.92
4966 5106 2.537529 GCACCGATGTGATTTCGTGATG 60.538 50.000 0.00 0.00 45.76 3.07
4967 5107 1.665679 GCACCGATGTGATTTCGTGAT 59.334 47.619 0.00 0.00 45.76 3.06
4968 5108 1.075542 GCACCGATGTGATTTCGTGA 58.924 50.000 0.00 0.00 45.76 4.35
4969 5109 0.795698 TGCACCGATGTGATTTCGTG 59.204 50.000 0.00 0.00 45.76 4.35
4970 5110 1.464608 CTTGCACCGATGTGATTTCGT 59.535 47.619 0.00 0.00 45.76 3.85
4971 5111 1.202065 CCTTGCACCGATGTGATTTCG 60.202 52.381 0.00 0.00 45.76 3.46
4972 5112 1.468054 GCCTTGCACCGATGTGATTTC 60.468 52.381 0.00 0.00 45.76 2.17
4973 5113 0.527565 GCCTTGCACCGATGTGATTT 59.472 50.000 0.00 0.00 45.76 2.17
4974 5114 1.647545 CGCCTTGCACCGATGTGATT 61.648 55.000 0.00 0.00 45.76 2.57
4975 5115 2.108514 CGCCTTGCACCGATGTGAT 61.109 57.895 0.00 0.00 45.76 3.06
4976 5116 2.741985 CGCCTTGCACCGATGTGA 60.742 61.111 0.00 0.00 45.76 3.58
4977 5117 3.049674 ACGCCTTGCACCGATGTG 61.050 61.111 7.50 0.00 45.65 3.21
4978 5118 3.049674 CACGCCTTGCACCGATGT 61.050 61.111 7.50 0.00 0.00 3.06
4979 5119 3.803082 CCACGCCTTGCACCGATG 61.803 66.667 7.50 3.08 0.00 3.84
4980 5120 2.457743 TTACCACGCCTTGCACCGAT 62.458 55.000 7.50 0.00 0.00 4.18
4981 5121 2.661840 TTTACCACGCCTTGCACCGA 62.662 55.000 7.50 0.00 0.00 4.69
4982 5122 1.787057 TTTTACCACGCCTTGCACCG 61.787 55.000 0.00 0.00 0.00 4.94
4983 5123 0.386113 TTTTTACCACGCCTTGCACC 59.614 50.000 0.00 0.00 0.00 5.01
4984 5124 3.949031 TTTTTACCACGCCTTGCAC 57.051 47.368 0.00 0.00 0.00 4.57


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.