Multiple sequence alignment - TraesCS2A01G213500

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS2A01G213500 chr2A 100.000 2959 0 0 1 2959 199034217 199031259 0.000000e+00 5465
1 TraesCS2A01G213500 chr2B 93.902 2050 72 20 254 2279 239648241 239646221 0.000000e+00 3044
2 TraesCS2A01G213500 chr2B 88.455 563 45 8 2413 2959 239646221 239645663 0.000000e+00 662
3 TraesCS2A01G213500 chr2B 94.483 145 7 1 2281 2425 380620386 380620243 3.840000e-54 222
4 TraesCS2A01G213500 chr2D 88.115 244 23 6 1 241 186627378 186627138 4.830000e-73 285
5 TraesCS2A01G213500 chr2D 95.105 143 7 0 2279 2421 396613934 396613792 2.970000e-55 226
6 TraesCS2A01G213500 chr2D 93.333 150 4 3 262 410 186621109 186620965 1.790000e-52 217
7 TraesCS2A01G213500 chr6D 95.714 140 6 0 2279 2418 406391388 406391527 2.970000e-55 226
8 TraesCS2A01G213500 chr6D 89.714 175 10 6 2281 2450 315624041 315624212 1.790000e-52 217
9 TraesCS2A01G213500 chr5D 93.919 148 9 0 2279 2426 61715353 61715206 1.070000e-54 224
10 TraesCS2A01G213500 chr7B 94.483 145 7 1 2281 2425 316568608 316568465 3.840000e-54 222
11 TraesCS2A01G213500 chr6B 95.683 139 5 1 2281 2419 400964387 400964524 3.840000e-54 222
12 TraesCS2A01G213500 chr6A 93.919 148 8 1 2279 2426 183365880 183365734 3.840000e-54 222
13 TraesCS2A01G213500 chr4B 94.483 145 7 1 2281 2425 175009438 175009295 3.840000e-54 222


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS2A01G213500 chr2A 199031259 199034217 2958 True 5465 5465 100.0000 1 2959 1 chr2A.!!$R1 2958
1 TraesCS2A01G213500 chr2B 239645663 239648241 2578 True 1853 3044 91.1785 254 2959 2 chr2B.!!$R2 2705

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
25 26 0.032912 ATCATGCACCCTCATTGCCA 60.033 50.0 0.0 0.0 39.39 4.92 F
368 371 0.033894 TAATTCCGAGCCCAAACCCC 60.034 55.0 0.0 0.0 0.00 4.95 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1142 1158 0.502275 GCACATTTTTCACAACGCCG 59.498 50.0 0.00 0.0 0.00 6.46 R
2187 2208 0.740737 AATTCAGGGCATGCGTTAGC 59.259 50.0 12.44 0.0 45.41 3.09 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
22 23 5.777850 TCATAAATCATGCACCCTCATTG 57.222 39.130 0.00 0.00 34.35 2.82
23 24 2.973694 AAATCATGCACCCTCATTGC 57.026 45.000 0.00 0.00 40.63 3.56
24 25 1.117150 AATCATGCACCCTCATTGCC 58.883 50.000 0.00 0.00 39.39 4.52
25 26 0.032912 ATCATGCACCCTCATTGCCA 60.033 50.000 0.00 0.00 39.39 4.92
26 27 0.966875 TCATGCACCCTCATTGCCAC 60.967 55.000 0.00 0.00 39.39 5.01
27 28 0.968901 CATGCACCCTCATTGCCACT 60.969 55.000 0.00 0.00 39.39 4.00
28 29 0.625316 ATGCACCCTCATTGCCACTA 59.375 50.000 0.00 0.00 39.39 2.74
29 30 0.322456 TGCACCCTCATTGCCACTAC 60.322 55.000 0.00 0.00 39.39 2.73
30 31 1.369091 GCACCCTCATTGCCACTACG 61.369 60.000 0.00 0.00 33.58 3.51
31 32 0.249120 CACCCTCATTGCCACTACGA 59.751 55.000 0.00 0.00 0.00 3.43
32 33 0.249398 ACCCTCATTGCCACTACGAC 59.751 55.000 0.00 0.00 0.00 4.34
33 34 0.249120 CCCTCATTGCCACTACGACA 59.751 55.000 0.00 0.00 0.00 4.35
34 35 1.134401 CCCTCATTGCCACTACGACAT 60.134 52.381 0.00 0.00 0.00 3.06
35 36 2.205074 CCTCATTGCCACTACGACATC 58.795 52.381 0.00 0.00 0.00 3.06
36 37 2.418609 CCTCATTGCCACTACGACATCA 60.419 50.000 0.00 0.00 0.00 3.07
37 38 3.261580 CTCATTGCCACTACGACATCAA 58.738 45.455 0.00 0.00 0.00 2.57
38 39 3.872696 TCATTGCCACTACGACATCAAT 58.127 40.909 0.00 0.00 0.00 2.57
39 40 4.260985 TCATTGCCACTACGACATCAATT 58.739 39.130 0.00 0.00 0.00 2.32
40 41 4.699735 TCATTGCCACTACGACATCAATTT 59.300 37.500 0.00 0.00 0.00 1.82
41 42 4.418013 TTGCCACTACGACATCAATTTG 57.582 40.909 0.00 0.00 0.00 2.32
42 43 2.746904 TGCCACTACGACATCAATTTGG 59.253 45.455 0.00 0.00 0.00 3.28
43 44 3.006940 GCCACTACGACATCAATTTGGA 58.993 45.455 0.00 0.00 0.00 3.53
44 45 3.438781 GCCACTACGACATCAATTTGGAA 59.561 43.478 0.00 0.00 0.00 3.53
45 46 4.096382 GCCACTACGACATCAATTTGGAAT 59.904 41.667 0.00 0.00 0.00 3.01
46 47 5.393027 GCCACTACGACATCAATTTGGAATT 60.393 40.000 0.00 0.00 0.00 2.17
47 48 6.620678 CCACTACGACATCAATTTGGAATTT 58.379 36.000 0.00 0.00 0.00 1.82
48 49 7.090173 CCACTACGACATCAATTTGGAATTTT 58.910 34.615 0.00 0.00 0.00 1.82
49 50 8.240682 CCACTACGACATCAATTTGGAATTTTA 58.759 33.333 0.00 0.00 0.00 1.52
50 51 9.277565 CACTACGACATCAATTTGGAATTTTAG 57.722 33.333 0.00 0.00 0.00 1.85
51 52 9.226606 ACTACGACATCAATTTGGAATTTTAGA 57.773 29.630 0.00 0.00 0.00 2.10
53 54 8.970691 ACGACATCAATTTGGAATTTTAGAAG 57.029 30.769 0.00 0.00 0.00 2.85
54 55 7.542130 ACGACATCAATTTGGAATTTTAGAAGC 59.458 33.333 0.00 0.00 0.00 3.86
55 56 7.009540 CGACATCAATTTGGAATTTTAGAAGCC 59.990 37.037 0.00 0.00 0.00 4.35
56 57 7.678837 ACATCAATTTGGAATTTTAGAAGCCA 58.321 30.769 0.00 0.00 0.00 4.75
57 58 8.156165 ACATCAATTTGGAATTTTAGAAGCCAA 58.844 29.630 0.00 0.00 36.88 4.52
58 59 8.662141 CATCAATTTGGAATTTTAGAAGCCAAG 58.338 33.333 0.00 0.00 39.52 3.61
59 60 7.961351 TCAATTTGGAATTTTAGAAGCCAAGA 58.039 30.769 0.00 0.00 39.52 3.02
60 61 8.596293 TCAATTTGGAATTTTAGAAGCCAAGAT 58.404 29.630 0.00 0.00 39.52 2.40
61 62 8.876790 CAATTTGGAATTTTAGAAGCCAAGATC 58.123 33.333 0.00 0.00 39.52 2.75
62 63 7.781324 TTTGGAATTTTAGAAGCCAAGATCT 57.219 32.000 0.00 0.00 39.52 2.75
63 64 7.781324 TTGGAATTTTAGAAGCCAAGATCTT 57.219 32.000 0.88 0.88 33.96 2.40
64 65 7.781324 TGGAATTTTAGAAGCCAAGATCTTT 57.219 32.000 4.86 0.00 0.00 2.52
65 66 8.193953 TGGAATTTTAGAAGCCAAGATCTTTT 57.806 30.769 4.86 0.00 0.00 2.27
66 67 8.306761 TGGAATTTTAGAAGCCAAGATCTTTTC 58.693 33.333 4.86 7.71 0.00 2.29
67 68 8.306761 GGAATTTTAGAAGCCAAGATCTTTTCA 58.693 33.333 16.82 4.63 0.00 2.69
68 69 9.133627 GAATTTTAGAAGCCAAGATCTTTTCAC 57.866 33.333 16.82 4.10 0.00 3.18
69 70 5.862924 TTAGAAGCCAAGATCTTTTCACG 57.137 39.130 16.82 2.73 0.00 4.35
70 71 4.008074 AGAAGCCAAGATCTTTTCACGA 57.992 40.909 16.82 0.00 0.00 4.35
71 72 3.999663 AGAAGCCAAGATCTTTTCACGAG 59.000 43.478 16.82 1.50 0.00 4.18
72 73 3.409026 AGCCAAGATCTTTTCACGAGT 57.591 42.857 4.86 0.00 0.00 4.18
73 74 3.070018 AGCCAAGATCTTTTCACGAGTG 58.930 45.455 4.86 0.00 0.00 3.51
74 75 3.067106 GCCAAGATCTTTTCACGAGTGA 58.933 45.455 4.86 1.24 37.91 3.41
75 76 3.124297 GCCAAGATCTTTTCACGAGTGAG 59.876 47.826 4.86 0.00 41.13 3.51
76 77 4.310769 CCAAGATCTTTTCACGAGTGAGT 58.689 43.478 4.86 0.00 41.13 3.41
77 78 4.752101 CCAAGATCTTTTCACGAGTGAGTT 59.248 41.667 4.86 0.00 41.13 3.01
78 79 5.237344 CCAAGATCTTTTCACGAGTGAGTTT 59.763 40.000 4.86 0.00 41.13 2.66
79 80 6.238484 CCAAGATCTTTTCACGAGTGAGTTTT 60.238 38.462 4.86 0.00 41.13 2.43
80 81 6.532365 AGATCTTTTCACGAGTGAGTTTTC 57.468 37.500 6.03 2.61 41.13 2.29
81 82 6.049149 AGATCTTTTCACGAGTGAGTTTTCA 58.951 36.000 6.03 0.00 41.13 2.69
82 83 6.538742 AGATCTTTTCACGAGTGAGTTTTCAA 59.461 34.615 6.03 0.00 41.13 2.69
83 84 6.677781 TCTTTTCACGAGTGAGTTTTCAAT 57.322 33.333 6.03 0.00 41.13 2.57
84 85 7.083875 TCTTTTCACGAGTGAGTTTTCAATT 57.916 32.000 6.03 0.00 41.13 2.32
85 86 7.186804 TCTTTTCACGAGTGAGTTTTCAATTC 58.813 34.615 6.03 0.00 41.13 2.17
86 87 6.677781 TTTCACGAGTGAGTTTTCAATTCT 57.322 33.333 6.03 0.00 41.13 2.40
87 88 5.657470 TCACGAGTGAGTTTTCAATTCTG 57.343 39.130 1.24 0.00 34.49 3.02
88 89 5.356426 TCACGAGTGAGTTTTCAATTCTGA 58.644 37.500 1.24 0.00 34.49 3.27
89 90 5.815222 TCACGAGTGAGTTTTCAATTCTGAA 59.185 36.000 1.24 0.00 35.79 3.02
90 91 6.315144 TCACGAGTGAGTTTTCAATTCTGAAA 59.685 34.615 1.24 0.00 40.78 2.69
91 92 7.465916 TCACGAGTGAGTTTTCAATTCTGAAAG 60.466 37.037 1.24 0.00 42.01 2.62
102 103 8.853077 TTTCAATTCTGAAAGCTAAGATCTCA 57.147 30.769 0.00 0.00 44.76 3.27
103 104 7.840342 TCAATTCTGAAAGCTAAGATCTCAC 57.160 36.000 0.00 0.00 0.00 3.51
104 105 6.533012 TCAATTCTGAAAGCTAAGATCTCACG 59.467 38.462 0.00 0.00 0.00 4.35
105 106 5.644977 TTCTGAAAGCTAAGATCTCACGA 57.355 39.130 0.00 0.00 0.00 4.35
106 107 5.644977 TCTGAAAGCTAAGATCTCACGAA 57.355 39.130 0.00 0.00 0.00 3.85
107 108 5.645624 TCTGAAAGCTAAGATCTCACGAAG 58.354 41.667 0.00 0.00 0.00 3.79
108 109 5.416013 TCTGAAAGCTAAGATCTCACGAAGA 59.584 40.000 0.00 0.00 38.72 2.87
109 110 5.403246 TGAAAGCTAAGATCTCACGAAGAC 58.597 41.667 0.00 0.00 36.65 3.01
110 111 5.048013 TGAAAGCTAAGATCTCACGAAGACA 60.048 40.000 0.00 0.00 36.65 3.41
111 112 4.630894 AGCTAAGATCTCACGAAGACAG 57.369 45.455 0.00 0.00 36.65 3.51
112 113 4.265893 AGCTAAGATCTCACGAAGACAGA 58.734 43.478 0.00 0.00 36.65 3.41
113 114 4.702612 AGCTAAGATCTCACGAAGACAGAA 59.297 41.667 0.00 0.00 36.65 3.02
114 115 5.034152 GCTAAGATCTCACGAAGACAGAAG 58.966 45.833 0.00 0.00 36.65 2.85
115 116 5.163703 GCTAAGATCTCACGAAGACAGAAGA 60.164 44.000 0.00 0.00 36.65 2.87
116 117 5.913137 AAGATCTCACGAAGACAGAAGAT 57.087 39.130 0.00 0.00 36.65 2.40
117 118 5.247507 AGATCTCACGAAGACAGAAGATG 57.752 43.478 0.00 0.00 36.65 2.90
118 119 3.857549 TCTCACGAAGACAGAAGATGG 57.142 47.619 0.00 0.00 0.00 3.51
119 120 2.493675 TCTCACGAAGACAGAAGATGGG 59.506 50.000 0.00 0.00 0.00 4.00
120 121 1.550524 TCACGAAGACAGAAGATGGGG 59.449 52.381 0.00 0.00 0.00 4.96
121 122 0.250513 ACGAAGACAGAAGATGGGGC 59.749 55.000 0.00 0.00 0.00 5.80
122 123 0.250234 CGAAGACAGAAGATGGGGCA 59.750 55.000 0.00 0.00 0.00 5.36
123 124 1.741732 CGAAGACAGAAGATGGGGCAG 60.742 57.143 0.00 0.00 0.00 4.85
124 125 1.556911 GAAGACAGAAGATGGGGCAGA 59.443 52.381 0.00 0.00 0.00 4.26
125 126 0.908198 AGACAGAAGATGGGGCAGAC 59.092 55.000 0.00 0.00 0.00 3.51
126 127 0.615331 GACAGAAGATGGGGCAGACA 59.385 55.000 0.00 0.00 0.00 3.41
127 128 0.326264 ACAGAAGATGGGGCAGACAC 59.674 55.000 0.00 0.00 0.00 3.67
128 129 0.742281 CAGAAGATGGGGCAGACACG 60.742 60.000 0.00 0.00 0.00 4.49
129 130 1.194781 AGAAGATGGGGCAGACACGT 61.195 55.000 0.00 0.00 0.00 4.49
130 131 0.741221 GAAGATGGGGCAGACACGTC 60.741 60.000 0.00 0.00 0.00 4.34
131 132 2.507110 AAGATGGGGCAGACACGTCG 62.507 60.000 0.00 0.00 34.09 5.12
132 133 2.994995 ATGGGGCAGACACGTCGA 60.995 61.111 0.00 0.00 34.09 4.20
133 134 3.296709 ATGGGGCAGACACGTCGAC 62.297 63.158 5.18 5.18 34.09 4.20
134 135 3.986006 GGGGCAGACACGTCGACA 61.986 66.667 17.16 0.00 34.09 4.35
135 136 2.028484 GGGCAGACACGTCGACAA 59.972 61.111 17.16 0.00 34.09 3.18
136 137 1.374252 GGGCAGACACGTCGACAAT 60.374 57.895 17.16 0.00 34.09 2.71
137 138 1.626654 GGGCAGACACGTCGACAATG 61.627 60.000 17.16 15.23 34.09 2.82
138 139 0.666274 GGCAGACACGTCGACAATGA 60.666 55.000 20.44 0.00 34.09 2.57
139 140 1.136690 GCAGACACGTCGACAATGAA 58.863 50.000 20.44 0.00 34.09 2.57
140 141 1.525197 GCAGACACGTCGACAATGAAA 59.475 47.619 20.44 0.00 34.09 2.69
141 142 2.033236 GCAGACACGTCGACAATGAAAA 60.033 45.455 20.44 0.00 34.09 2.29
142 143 3.531982 CAGACACGTCGACAATGAAAAC 58.468 45.455 20.44 10.23 34.09 2.43
143 144 2.542595 AGACACGTCGACAATGAAAACC 59.457 45.455 20.44 6.75 34.09 3.27
144 145 2.542595 GACACGTCGACAATGAAAACCT 59.457 45.455 20.44 0.39 0.00 3.50
145 146 2.542595 ACACGTCGACAATGAAAACCTC 59.457 45.455 20.44 0.00 0.00 3.85
146 147 2.096417 CACGTCGACAATGAAAACCTCC 60.096 50.000 17.16 0.00 0.00 4.30
147 148 2.139917 CGTCGACAATGAAAACCTCCA 58.860 47.619 17.16 0.00 0.00 3.86
148 149 2.742053 CGTCGACAATGAAAACCTCCAT 59.258 45.455 17.16 0.00 0.00 3.41
149 150 3.181520 CGTCGACAATGAAAACCTCCATC 60.182 47.826 17.16 0.00 0.00 3.51
150 151 3.751175 GTCGACAATGAAAACCTCCATCA 59.249 43.478 11.55 0.00 0.00 3.07
151 152 3.751175 TCGACAATGAAAACCTCCATCAC 59.249 43.478 0.00 0.00 0.00 3.06
152 153 3.424829 CGACAATGAAAACCTCCATCACG 60.425 47.826 0.00 0.00 0.00 4.35
153 154 3.750371 ACAATGAAAACCTCCATCACGA 58.250 40.909 0.00 0.00 0.00 4.35
154 155 3.502211 ACAATGAAAACCTCCATCACGAC 59.498 43.478 0.00 0.00 0.00 4.34
155 156 3.703001 ATGAAAACCTCCATCACGACT 57.297 42.857 0.00 0.00 0.00 4.18
156 157 3.040147 TGAAAACCTCCATCACGACTC 57.960 47.619 0.00 0.00 0.00 3.36
157 158 1.993370 GAAAACCTCCATCACGACTCG 59.007 52.381 0.00 0.00 0.00 4.18
158 159 1.254026 AAACCTCCATCACGACTCGA 58.746 50.000 5.20 0.00 0.00 4.04
159 160 1.475403 AACCTCCATCACGACTCGAT 58.525 50.000 5.20 0.00 0.00 3.59
160 161 0.741326 ACCTCCATCACGACTCGATG 59.259 55.000 5.20 0.00 40.01 3.84
161 162 0.596083 CCTCCATCACGACTCGATGC 60.596 60.000 5.20 0.00 39.17 3.91
162 163 0.596083 CTCCATCACGACTCGATGCC 60.596 60.000 5.20 0.00 39.17 4.40
163 164 1.946156 CCATCACGACTCGATGCCG 60.946 63.158 5.20 0.00 39.17 5.69
164 165 1.946156 CATCACGACTCGATGCCGG 60.946 63.158 5.20 0.00 34.32 6.13
165 166 2.415608 ATCACGACTCGATGCCGGT 61.416 57.895 5.20 0.00 36.24 5.28
166 167 2.613739 ATCACGACTCGATGCCGGTG 62.614 60.000 5.20 0.00 36.24 4.94
167 168 4.129737 ACGACTCGATGCCGGTGG 62.130 66.667 5.20 0.00 36.24 4.61
168 169 4.873129 CGACTCGATGCCGGTGGG 62.873 72.222 1.90 0.00 36.24 4.61
178 179 2.828549 CCGGTGGGCAGCATTACC 60.829 66.667 0.00 0.00 0.00 2.85
179 180 2.272146 CGGTGGGCAGCATTACCT 59.728 61.111 9.47 0.00 0.00 3.08
180 181 1.378514 CGGTGGGCAGCATTACCTT 60.379 57.895 9.47 0.00 0.00 3.50
181 182 1.376609 CGGTGGGCAGCATTACCTTC 61.377 60.000 9.47 0.00 0.00 3.46
182 183 1.037579 GGTGGGCAGCATTACCTTCC 61.038 60.000 0.00 0.00 0.00 3.46
183 184 0.034089 GTGGGCAGCATTACCTTCCT 60.034 55.000 0.00 0.00 0.00 3.36
184 185 0.704076 TGGGCAGCATTACCTTCCTT 59.296 50.000 0.00 0.00 0.00 3.36
185 186 1.077005 TGGGCAGCATTACCTTCCTTT 59.923 47.619 0.00 0.00 0.00 3.11
186 187 1.478105 GGGCAGCATTACCTTCCTTTG 59.522 52.381 0.00 0.00 0.00 2.77
187 188 2.171003 GGCAGCATTACCTTCCTTTGT 58.829 47.619 0.00 0.00 0.00 2.83
188 189 2.094545 GGCAGCATTACCTTCCTTTGTG 60.095 50.000 0.00 0.00 0.00 3.33
189 190 2.094545 GCAGCATTACCTTCCTTTGTGG 60.095 50.000 0.00 0.00 37.10 4.17
190 191 2.493278 CAGCATTACCTTCCTTTGTGGG 59.507 50.000 0.00 0.00 36.20 4.61
191 192 1.204704 GCATTACCTTCCTTTGTGGGC 59.795 52.381 0.00 0.00 36.20 5.36
192 193 1.472480 CATTACCTTCCTTTGTGGGCG 59.528 52.381 0.00 0.00 36.20 6.13
193 194 0.891904 TTACCTTCCTTTGTGGGCGC 60.892 55.000 0.00 0.00 36.20 6.53
194 195 2.058125 TACCTTCCTTTGTGGGCGCA 62.058 55.000 10.83 0.00 36.20 6.09
195 196 2.644992 CTTCCTTTGTGGGCGCAC 59.355 61.111 25.75 25.75 36.20 5.34
196 197 1.898574 CTTCCTTTGTGGGCGCACT 60.899 57.895 30.85 0.00 36.20 4.40
197 198 2.133742 CTTCCTTTGTGGGCGCACTG 62.134 60.000 30.85 20.72 36.20 3.66
198 199 3.673484 CCTTTGTGGGCGCACTGG 61.673 66.667 30.85 24.65 0.00 4.00
199 200 3.673484 CTTTGTGGGCGCACTGGG 61.673 66.667 30.85 17.69 0.00 4.45
210 211 4.511246 CACTGGGGATGCGGGCAT 62.511 66.667 5.73 5.73 39.69 4.40
211 212 4.511246 ACTGGGGATGCGGGCATG 62.511 66.667 11.44 0.00 36.70 4.06
214 215 4.521292 GGGGATGCGGGCATGGAA 62.521 66.667 11.44 0.00 36.70 3.53
215 216 2.908940 GGGATGCGGGCATGGAAG 60.909 66.667 11.44 0.00 36.70 3.46
216 217 2.908940 GGATGCGGGCATGGAAGG 60.909 66.667 11.44 0.00 36.70 3.46
217 218 2.908940 GATGCGGGCATGGAAGGG 60.909 66.667 11.44 0.00 36.70 3.95
218 219 3.419580 ATGCGGGCATGGAAGGGA 61.420 61.111 5.17 0.00 35.03 4.20
219 220 3.426309 ATGCGGGCATGGAAGGGAG 62.426 63.158 5.17 0.00 35.03 4.30
220 221 3.797353 GCGGGCATGGAAGGGAGA 61.797 66.667 0.00 0.00 0.00 3.71
221 222 2.507944 CGGGCATGGAAGGGAGAG 59.492 66.667 0.00 0.00 0.00 3.20
222 223 2.922234 GGGCATGGAAGGGAGAGG 59.078 66.667 0.00 0.00 0.00 3.69
223 224 2.003548 GGGCATGGAAGGGAGAGGT 61.004 63.158 0.00 0.00 0.00 3.85
224 225 1.529309 GGCATGGAAGGGAGAGGTC 59.471 63.158 0.00 0.00 0.00 3.85
225 226 1.274703 GGCATGGAAGGGAGAGGTCA 61.275 60.000 0.00 0.00 0.00 4.02
226 227 0.179936 GCATGGAAGGGAGAGGTCAG 59.820 60.000 0.00 0.00 0.00 3.51
227 228 1.577736 CATGGAAGGGAGAGGTCAGT 58.422 55.000 0.00 0.00 0.00 3.41
228 229 1.912043 CATGGAAGGGAGAGGTCAGTT 59.088 52.381 0.00 0.00 0.00 3.16
229 230 2.118403 TGGAAGGGAGAGGTCAGTTT 57.882 50.000 0.00 0.00 0.00 2.66
230 231 2.418669 TGGAAGGGAGAGGTCAGTTTT 58.581 47.619 0.00 0.00 0.00 2.43
231 232 2.783510 TGGAAGGGAGAGGTCAGTTTTT 59.216 45.455 0.00 0.00 0.00 1.94
250 251 4.789012 TTTTCACAGGAATTGGAGATGC 57.211 40.909 0.00 0.00 31.93 3.91
251 252 2.425143 TCACAGGAATTGGAGATGCC 57.575 50.000 0.00 0.00 37.10 4.40
252 253 1.918262 TCACAGGAATTGGAGATGCCT 59.082 47.619 0.00 0.00 37.63 4.75
253 254 2.309755 TCACAGGAATTGGAGATGCCTT 59.690 45.455 0.00 0.00 37.63 4.35
254 255 2.426024 CACAGGAATTGGAGATGCCTTG 59.574 50.000 0.00 0.00 37.63 3.61
255 256 2.042162 ACAGGAATTGGAGATGCCTTGT 59.958 45.455 0.00 0.00 37.63 3.16
256 257 3.266772 ACAGGAATTGGAGATGCCTTGTA 59.733 43.478 0.00 0.00 37.63 2.41
257 258 4.263905 ACAGGAATTGGAGATGCCTTGTAA 60.264 41.667 0.00 0.00 37.63 2.41
258 259 4.891756 CAGGAATTGGAGATGCCTTGTAAT 59.108 41.667 0.00 0.00 37.63 1.89
259 260 5.361857 CAGGAATTGGAGATGCCTTGTAATT 59.638 40.000 0.00 0.00 37.63 1.40
260 261 5.595952 AGGAATTGGAGATGCCTTGTAATTC 59.404 40.000 0.00 0.00 37.63 2.17
263 264 4.746535 TGGAGATGCCTTGTAATTCGTA 57.253 40.909 0.00 0.00 37.63 3.43
267 268 5.758296 GGAGATGCCTTGTAATTCGTAATGA 59.242 40.000 0.00 0.00 0.00 2.57
292 293 5.687166 TTTCGGGATGTGGTATTAGAGTT 57.313 39.130 0.00 0.00 0.00 3.01
333 336 4.421058 TCTGTGAGAATTAATCGACCACG 58.579 43.478 0.00 0.00 41.26 4.94
339 342 7.171167 TGTGAGAATTAATCGACCACGTAAAAA 59.829 33.333 0.00 0.00 40.69 1.94
368 371 0.033894 TAATTCCGAGCCCAAACCCC 60.034 55.000 0.00 0.00 0.00 4.95
389 392 4.826183 CCCTGGAATCCTGAGAATTGAATC 59.174 45.833 7.81 0.00 0.00 2.52
528 537 1.956629 GCCTACGGCTGCTGTCCTAA 61.957 60.000 18.87 0.00 46.69 2.69
642 651 2.823147 GCTCGATGCTGGCTGCTT 60.823 61.111 17.45 11.13 43.37 3.91
742 751 2.098614 TCAAGAAGCCAAACAGCAACA 58.901 42.857 0.00 0.00 34.23 3.33
746 755 1.319614 AAGCCAAACAGCAACACCGT 61.320 50.000 0.00 0.00 34.23 4.83
830 846 6.040842 AGCTTAACACAAAATCAGTCCAACAT 59.959 34.615 0.00 0.00 0.00 2.71
864 880 7.722795 TCAATGTTGAAGAAAGACGTAATGA 57.277 32.000 0.00 0.00 33.55 2.57
867 883 6.764877 TGTTGAAGAAAGACGTAATGAGAC 57.235 37.500 0.00 0.00 0.00 3.36
877 893 5.784177 AGACGTAATGAGACAGTGATTTGT 58.216 37.500 0.00 0.00 0.00 2.83
886 902 5.012046 TGAGACAGTGATTTGTGACCTATGT 59.988 40.000 0.00 0.00 0.00 2.29
893 909 8.729756 CAGTGATTTGTGACCTATGTTTATCAA 58.270 33.333 0.00 0.00 0.00 2.57
1074 1090 1.376649 AAATGGACCAGGCTCTCCTT 58.623 50.000 0.00 0.90 41.93 3.36
1142 1158 2.042686 TGGAAGCCACATGCATACTC 57.957 50.000 0.00 0.00 44.83 2.59
1143 1159 0.940126 GGAAGCCACATGCATACTCG 59.060 55.000 0.00 0.00 44.83 4.18
1144 1160 0.940126 GAAGCCACATGCATACTCGG 59.060 55.000 0.00 0.00 44.83 4.63
1145 1161 1.097547 AAGCCACATGCATACTCGGC 61.098 55.000 16.17 16.17 44.83 5.54
1146 1162 2.885676 GCCACATGCATACTCGGCG 61.886 63.158 0.00 0.00 40.77 6.46
1147 1163 1.521457 CCACATGCATACTCGGCGT 60.521 57.895 6.85 0.00 0.00 5.68
1148 1164 1.089481 CCACATGCATACTCGGCGTT 61.089 55.000 6.85 0.00 0.00 4.84
1163 1179 1.196200 GCGTTGTGAAAAATGTGCGT 58.804 45.000 0.00 0.00 0.00 5.24
1248 1264 2.566833 TTGCAGTACCATCAGCAAGT 57.433 45.000 0.00 0.00 41.55 3.16
1265 1281 2.048222 TTGCTCGCCCGTTCTGAG 60.048 61.111 0.00 0.00 0.00 3.35
1324 1340 2.749621 ACGATGAGGATGCTTGGAAAAC 59.250 45.455 0.00 0.00 0.00 2.43
1344 1360 3.645434 ACGTACATTCAGGTGGGGTATA 58.355 45.455 0.00 0.00 0.00 1.47
1345 1361 3.385755 ACGTACATTCAGGTGGGGTATAC 59.614 47.826 0.00 0.00 0.00 1.47
1356 1372 3.310501 GGTGGGGTATACAAATTCGTTCG 59.689 47.826 5.01 0.00 0.00 3.95
1380 1396 6.197842 CGTATTGTTTCTTACTGGGATACGAC 59.802 42.308 6.71 0.00 41.91 4.34
1381 1397 4.100707 TGTTTCTTACTGGGATACGACG 57.899 45.455 0.00 0.00 37.60 5.12
1382 1398 3.758023 TGTTTCTTACTGGGATACGACGA 59.242 43.478 0.00 0.00 37.60 4.20
1392 1408 4.392047 TGGGATACGACGATTCTAGCTTA 58.608 43.478 0.00 0.00 37.60 3.09
1393 1409 5.008331 TGGGATACGACGATTCTAGCTTAT 58.992 41.667 0.00 0.00 37.60 1.73
1394 1410 6.175471 TGGGATACGACGATTCTAGCTTATA 58.825 40.000 0.00 0.00 37.60 0.98
1395 1411 6.827251 TGGGATACGACGATTCTAGCTTATAT 59.173 38.462 0.00 0.00 37.60 0.86
1396 1412 7.989170 TGGGATACGACGATTCTAGCTTATATA 59.011 37.037 0.00 0.00 37.60 0.86
1399 1415 9.814507 GATACGACGATTCTAGCTTATATATGG 57.185 37.037 0.00 0.00 0.00 2.74
1533 1549 1.144565 CGAAGATGAGAGTGCAGGCG 61.145 60.000 0.00 0.00 0.00 5.52
1568 1584 1.551883 GAAATGGCATTGAAGGGTGCT 59.448 47.619 14.47 0.00 41.04 4.40
1571 1587 0.178967 TGGCATTGAAGGGTGCTGAA 60.179 50.000 0.00 0.00 41.04 3.02
1673 1689 0.603569 AACCCACTCTACAGAGCACG 59.396 55.000 6.15 0.00 45.79 5.34
1697 1713 3.517500 GGAGGAAGAGGTTCAGAACAGAT 59.482 47.826 15.36 0.23 33.93 2.90
1741 1757 8.072567 GTCTGGGAATATCAAGAATTCATTTCG 58.927 37.037 8.44 0.00 39.46 3.46
1793 1809 1.091771 AACCAGCGAATGCATCTCCG 61.092 55.000 0.00 5.68 46.23 4.63
1862 1878 0.326048 ATCTGCTGAGGGCCTACTGT 60.326 55.000 5.73 0.00 40.92 3.55
1910 1926 0.251787 AATCCCTTGTGGCACTTCCC 60.252 55.000 19.83 0.00 0.00 3.97
1916 1932 0.409092 TTGTGGCACTTCCCATGGAT 59.591 50.000 19.83 0.00 37.20 3.41
1965 1981 4.996788 ATTGGCAGGAATTGAAGCTTAG 57.003 40.909 0.00 0.00 0.00 2.18
1966 1982 3.439857 TGGCAGGAATTGAAGCTTAGT 57.560 42.857 0.00 0.00 0.00 2.24
1967 1983 4.568072 TGGCAGGAATTGAAGCTTAGTA 57.432 40.909 0.00 0.00 0.00 1.82
1968 1984 4.517285 TGGCAGGAATTGAAGCTTAGTAG 58.483 43.478 0.00 0.00 0.00 2.57
1969 1985 4.019321 TGGCAGGAATTGAAGCTTAGTAGT 60.019 41.667 0.00 0.00 0.00 2.73
1977 1993 7.254932 GGAATTGAAGCTTAGTAGTTATGGCAG 60.255 40.741 0.00 0.00 0.00 4.85
1986 2002 8.930760 GCTTAGTAGTTATGGCAGATTTATCAG 58.069 37.037 0.00 0.00 0.00 2.90
2019 2038 9.431887 TGTAGTATTAAACTAGCTTTGTCCAAG 57.568 33.333 0.00 0.00 41.42 3.61
2053 2072 3.573538 TGCAATGCCTGATGTTTAACTGT 59.426 39.130 1.53 0.00 0.00 3.55
2054 2073 4.168760 GCAATGCCTGATGTTTAACTGTC 58.831 43.478 0.00 0.00 0.00 3.51
2055 2074 4.737054 CAATGCCTGATGTTTAACTGTCC 58.263 43.478 0.00 0.00 0.00 4.02
2056 2075 3.788227 TGCCTGATGTTTAACTGTCCT 57.212 42.857 0.00 0.00 0.00 3.85
2057 2076 4.901197 TGCCTGATGTTTAACTGTCCTA 57.099 40.909 0.00 0.00 0.00 2.94
2058 2077 4.575885 TGCCTGATGTTTAACTGTCCTAC 58.424 43.478 0.00 0.00 0.00 3.18
2078 2097 8.293867 GTCCTACTTCTATCTATGCAAGTACTG 58.706 40.741 0.00 0.00 31.52 2.74
2116 2135 4.037327 GGATTCTGCCAAGCTTCCTAATTC 59.963 45.833 0.00 0.00 0.00 2.17
2117 2136 3.719268 TCTGCCAAGCTTCCTAATTCA 57.281 42.857 0.00 0.00 0.00 2.57
2118 2137 4.032960 TCTGCCAAGCTTCCTAATTCAA 57.967 40.909 0.00 0.00 0.00 2.69
2124 2145 5.644644 CCAAGCTTCCTAATTCAATGTCAC 58.355 41.667 0.00 0.00 0.00 3.67
2126 2147 6.071728 CCAAGCTTCCTAATTCAATGTCACTT 60.072 38.462 0.00 0.00 0.00 3.16
2141 2162 8.885302 CAATGTCACTTCTGTATGTAACATTG 57.115 34.615 9.62 9.62 43.33 2.82
2145 2166 7.713073 TGTCACTTCTGTATGTAACATTGTCAA 59.287 33.333 0.00 0.00 37.50 3.18
2154 2175 2.490328 AACATTGTCAACACCAAGCG 57.510 45.000 0.00 0.00 0.00 4.68
2213 2234 1.958579 GCATGCCCTGAATTGCATAGA 59.041 47.619 6.36 0.00 45.98 1.98
2279 2300 7.624360 AAAAAGAAAAAGAAACCCACCAATC 57.376 32.000 0.00 0.00 0.00 2.67
2280 2301 6.560003 AAAGAAAAAGAAACCCACCAATCT 57.440 33.333 0.00 0.00 0.00 2.40
2281 2302 7.669089 AAAGAAAAAGAAACCCACCAATCTA 57.331 32.000 0.00 0.00 0.00 1.98
2282 2303 6.901081 AGAAAAAGAAACCCACCAATCTAG 57.099 37.500 0.00 0.00 0.00 2.43
2283 2304 6.610830 AGAAAAAGAAACCCACCAATCTAGA 58.389 36.000 0.00 0.00 0.00 2.43
2284 2305 7.241628 AGAAAAAGAAACCCACCAATCTAGAT 58.758 34.615 0.00 0.00 0.00 1.98
2285 2306 8.390921 AGAAAAAGAAACCCACCAATCTAGATA 58.609 33.333 5.46 0.00 0.00 1.98
2286 2307 9.190317 GAAAAAGAAACCCACCAATCTAGATAT 57.810 33.333 5.46 0.00 0.00 1.63
2287 2308 9.547279 AAAAAGAAACCCACCAATCTAGATATT 57.453 29.630 5.46 0.00 0.00 1.28
2288 2309 9.547279 AAAAGAAACCCACCAATCTAGATATTT 57.453 29.630 5.46 0.00 0.00 1.40
2289 2310 8.753497 AAGAAACCCACCAATCTAGATATTTC 57.247 34.615 5.46 7.78 0.00 2.17
2290 2311 7.872138 AGAAACCCACCAATCTAGATATTTCA 58.128 34.615 5.46 0.00 0.00 2.69
2291 2312 8.336235 AGAAACCCACCAATCTAGATATTTCAA 58.664 33.333 5.46 0.00 0.00 2.69
2292 2313 7.881775 AACCCACCAATCTAGATATTTCAAC 57.118 36.000 5.46 0.00 0.00 3.18
2293 2314 6.969043 ACCCACCAATCTAGATATTTCAACA 58.031 36.000 5.46 0.00 0.00 3.33
2294 2315 7.410174 ACCCACCAATCTAGATATTTCAACAA 58.590 34.615 5.46 0.00 0.00 2.83
2295 2316 7.557719 ACCCACCAATCTAGATATTTCAACAAG 59.442 37.037 5.46 0.00 0.00 3.16
2296 2317 7.557719 CCCACCAATCTAGATATTTCAACAAGT 59.442 37.037 5.46 0.00 0.00 3.16
2297 2318 8.400947 CCACCAATCTAGATATTTCAACAAGTG 58.599 37.037 5.46 0.00 0.00 3.16
2298 2319 9.166173 CACCAATCTAGATATTTCAACAAGTGA 57.834 33.333 5.46 0.00 0.00 3.41
2299 2320 9.167311 ACCAATCTAGATATTTCAACAAGTGAC 57.833 33.333 5.46 0.00 35.39 3.67
2300 2321 9.388506 CCAATCTAGATATTTCAACAAGTGACT 57.611 33.333 5.46 0.00 35.39 3.41
2302 2323 7.834068 TCTAGATATTTCAACAAGTGACTGC 57.166 36.000 0.00 0.00 35.39 4.40
2303 2324 7.386059 TCTAGATATTTCAACAAGTGACTGCA 58.614 34.615 0.00 0.00 35.39 4.41
2304 2325 8.043113 TCTAGATATTTCAACAAGTGACTGCAT 58.957 33.333 0.00 0.00 35.39 3.96
2305 2326 9.317936 CTAGATATTTCAACAAGTGACTGCATA 57.682 33.333 0.00 0.00 35.39 3.14
2306 2327 7.978982 AGATATTTCAACAAGTGACTGCATAC 58.021 34.615 0.00 0.00 35.39 2.39
2307 2328 7.607607 AGATATTTCAACAAGTGACTGCATACA 59.392 33.333 0.00 0.00 35.39 2.29
2321 2342 4.690184 TGCATACAGAGCAAAATGAGTG 57.310 40.909 0.00 0.00 39.39 3.51
2322 2343 4.325972 TGCATACAGAGCAAAATGAGTGA 58.674 39.130 0.00 0.00 39.39 3.41
2323 2344 4.761227 TGCATACAGAGCAAAATGAGTGAA 59.239 37.500 0.00 0.00 39.39 3.18
2324 2345 5.416639 TGCATACAGAGCAAAATGAGTGAAT 59.583 36.000 0.00 0.00 39.39 2.57
2325 2346 5.970023 GCATACAGAGCAAAATGAGTGAATC 59.030 40.000 0.00 0.00 0.00 2.52
2326 2347 6.183360 GCATACAGAGCAAAATGAGTGAATCT 60.183 38.462 0.00 0.00 0.00 2.40
2327 2348 7.011763 GCATACAGAGCAAAATGAGTGAATCTA 59.988 37.037 0.00 0.00 0.00 1.98
2328 2349 6.734104 ACAGAGCAAAATGAGTGAATCTAC 57.266 37.500 0.00 0.00 0.00 2.59
2329 2350 6.233434 ACAGAGCAAAATGAGTGAATCTACA 58.767 36.000 0.00 0.00 0.00 2.74
2330 2351 6.148480 ACAGAGCAAAATGAGTGAATCTACAC 59.852 38.462 0.00 0.00 40.60 2.90
2344 2365 9.469097 AGTGAATCTACACTCTAAAGTATGTCT 57.531 33.333 0.00 0.00 46.36 3.41
2366 2387 9.990868 TGTCTATATACATCCATATGTGGTAGT 57.009 33.333 8.51 10.44 45.99 2.73
2368 2389 9.642343 TCTATATACATCCATATGTGGTAGTCC 57.358 37.037 8.51 0.00 45.99 3.85
2369 2390 9.421399 CTATATACATCCATATGTGGTAGTCCA 57.579 37.037 8.51 1.36 45.99 4.02
2370 2391 8.860517 ATATACATCCATATGTGGTAGTCCAT 57.139 34.615 8.51 3.29 45.99 3.41
2371 2392 5.912149 ACATCCATATGTGGTAGTCCATT 57.088 39.130 8.51 0.00 44.79 3.16
2372 2393 6.266131 ACATCCATATGTGGTAGTCCATTT 57.734 37.500 8.51 0.00 44.79 2.32
2373 2394 6.064060 ACATCCATATGTGGTAGTCCATTTG 58.936 40.000 8.51 0.00 44.79 2.32
2374 2395 5.966853 TCCATATGTGGTAGTCCATTTGA 57.033 39.130 8.51 0.00 46.20 2.69
2375 2396 6.320434 TCCATATGTGGTAGTCCATTTGAA 57.680 37.500 8.51 0.00 46.20 2.69
2376 2397 6.726379 TCCATATGTGGTAGTCCATTTGAAA 58.274 36.000 8.51 0.00 46.20 2.69
2377 2398 7.353525 TCCATATGTGGTAGTCCATTTGAAAT 58.646 34.615 8.51 0.00 46.20 2.17
2378 2399 7.502226 TCCATATGTGGTAGTCCATTTGAAATC 59.498 37.037 8.51 0.00 46.20 2.17
2379 2400 7.503566 CCATATGTGGTAGTCCATTTGAAATCT 59.496 37.037 0.00 0.00 46.20 2.40
2380 2401 8.562892 CATATGTGGTAGTCCATTTGAAATCTC 58.437 37.037 0.00 0.00 46.20 2.75
2381 2402 6.126863 TGTGGTAGTCCATTTGAAATCTCT 57.873 37.500 0.00 0.00 46.20 3.10
2382 2403 7.252612 TGTGGTAGTCCATTTGAAATCTCTA 57.747 36.000 0.00 0.00 46.20 2.43
2383 2404 7.685481 TGTGGTAGTCCATTTGAAATCTCTAA 58.315 34.615 0.00 0.00 46.20 2.10
2384 2405 8.160765 TGTGGTAGTCCATTTGAAATCTCTAAA 58.839 33.333 0.00 0.00 46.20 1.85
2385 2406 9.010029 GTGGTAGTCCATTTGAAATCTCTAAAA 57.990 33.333 0.00 0.00 46.20 1.52
2386 2407 9.581289 TGGTAGTCCATTTGAAATCTCTAAAAA 57.419 29.630 0.00 0.00 39.03 1.94
2389 2410 7.606349 AGTCCATTTGAAATCTCTAAAAAGGC 58.394 34.615 0.00 0.00 0.00 4.35
2390 2411 7.233348 AGTCCATTTGAAATCTCTAAAAAGGCA 59.767 33.333 0.00 0.00 0.00 4.75
2391 2412 7.872483 GTCCATTTGAAATCTCTAAAAAGGCAA 59.128 33.333 0.00 0.00 0.00 4.52
2392 2413 8.428063 TCCATTTGAAATCTCTAAAAAGGCAAA 58.572 29.630 0.00 0.00 0.00 3.68
2393 2414 9.223099 CCATTTGAAATCTCTAAAAAGGCAAAT 57.777 29.630 0.00 0.00 34.78 2.32
2404 2425 9.503427 CTCTAAAAAGGCAAATATTTAGGAACG 57.497 33.333 0.00 0.00 36.48 3.95
2405 2426 8.463607 TCTAAAAAGGCAAATATTTAGGAACGG 58.536 33.333 0.00 0.00 36.48 4.44
2406 2427 5.592104 AAAGGCAAATATTTAGGAACGGG 57.408 39.130 0.00 0.00 0.00 5.28
2407 2428 3.562182 AGGCAAATATTTAGGAACGGGG 58.438 45.455 0.00 0.00 0.00 5.73
2408 2429 2.626266 GGCAAATATTTAGGAACGGGGG 59.374 50.000 0.00 0.00 0.00 5.40
2440 2461 9.169468 GTATGTAAATTTGACACACTGAAACTG 57.831 33.333 0.00 0.00 0.00 3.16
2452 2473 3.508793 CACTGAAACTGGCATCCTTTCAT 59.491 43.478 12.74 4.69 34.29 2.57
2463 2484 9.205513 ACTGGCATCCTTTCATCTTTTAATATT 57.794 29.630 0.00 0.00 0.00 1.28
2556 2577 4.184629 GTTACAATTCATCTCTCGGCACT 58.815 43.478 0.00 0.00 0.00 4.40
2564 2585 0.609406 TCTCTCGGCACTGTACTGCT 60.609 55.000 7.01 0.00 37.33 4.24
2565 2586 1.095600 CTCTCGGCACTGTACTGCTA 58.904 55.000 7.01 0.00 37.33 3.49
2568 2589 1.405463 CTCGGCACTGTACTGCTATCA 59.595 52.381 7.01 0.00 37.33 2.15
2586 2607 6.183347 GCTATCAGAGTTATGGGCCAATATT 58.817 40.000 11.89 0.00 0.00 1.28
2587 2608 6.094603 GCTATCAGAGTTATGGGCCAATATTG 59.905 42.308 11.89 8.58 0.00 1.90
2623 2644 4.060900 CAATATGAATGTCTGAGGTCCCG 58.939 47.826 0.00 0.00 0.00 5.14
2636 2664 4.030913 TGAGGTCCCGACAGAGATTTTAT 58.969 43.478 0.00 0.00 0.00 1.40
2641 2669 5.927115 GGTCCCGACAGAGATTTTATGTATC 59.073 44.000 0.00 0.00 0.00 2.24
2647 2675 7.095857 CCGACAGAGATTTTATGTATCTGCTTC 60.096 40.741 0.62 0.00 40.82 3.86
2672 2702 6.502158 CCTATATCAAGTATTCAAGTCCCCCT 59.498 42.308 0.00 0.00 0.00 4.79
2682 2712 1.076438 AAGTCCCCCTCTCCTTTTGG 58.924 55.000 0.00 0.00 42.21 3.28
2699 2729 3.926058 TTGGTACATAGCCTTCCTTCC 57.074 47.619 0.00 0.00 39.30 3.46
2709 2739 4.388499 TTCCTTCCGGCGGCTGAC 62.388 66.667 23.83 0.00 0.00 3.51
2736 2766 4.431416 TGTGCCTTTCTTCTCCTAAACA 57.569 40.909 0.00 0.00 0.00 2.83
2742 2776 6.148811 TGCCTTTCTTCTCCTAAACAATTACG 59.851 38.462 0.00 0.00 0.00 3.18
2760 2794 9.758651 ACAATTACGAAGACAACTGCATATATA 57.241 29.630 0.00 0.00 0.00 0.86
2764 2798 9.841880 TTACGAAGACAACTGCATATATATCTC 57.158 33.333 0.00 0.00 0.00 2.75
2765 2799 7.886338 ACGAAGACAACTGCATATATATCTCA 58.114 34.615 0.00 0.00 0.00 3.27
2813 2847 1.134159 GCAGATGGAGCTTCACCTGAT 60.134 52.381 21.73 0.00 0.00 2.90
2831 2865 9.904198 TCACCTGATGAAGATATAACAATTGAA 57.096 29.630 13.59 0.00 33.02 2.69
2845 2879 8.891671 ATAACAATTGAAATGTCAGCAAAAGT 57.108 26.923 13.59 0.00 34.49 2.66
2854 2888 7.652909 TGAAATGTCAGCAAAAGTAAGATTTGG 59.347 33.333 0.00 0.00 38.04 3.28
2864 2898 8.860128 GCAAAAGTAAGATTTGGTATTAACTGC 58.140 33.333 0.00 0.00 38.04 4.40
2890 2926 9.590451 CAAATCATCTACAACATAAGGCAAAAT 57.410 29.630 0.00 0.00 0.00 1.82
2893 2929 6.663093 TCATCTACAACATAAGGCAAAATGGT 59.337 34.615 0.00 0.00 0.00 3.55
2900 2936 6.298441 ACATAAGGCAAAATGGTAAATGCT 57.702 33.333 0.00 0.00 38.79 3.79
2907 2943 5.065090 GGCAAAATGGTAAATGCTGGAATTC 59.935 40.000 0.00 0.00 38.79 2.17
2943 2979 5.471797 TCCATTGCGAGTTTAACAAGATCAA 59.528 36.000 0.00 0.00 0.00 2.57
2944 2980 5.569059 CCATTGCGAGTTTAACAAGATCAAC 59.431 40.000 0.00 0.00 0.00 3.18
2946 2982 5.342806 TGCGAGTTTAACAAGATCAACAG 57.657 39.130 0.00 0.00 0.00 3.16
2950 2986 6.616682 GCGAGTTTAACAAGATCAACAGAGAC 60.617 42.308 0.00 0.00 0.00 3.36
2951 2987 6.420903 CGAGTTTAACAAGATCAACAGAGACA 59.579 38.462 0.00 0.00 0.00 3.41
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
1 2 4.304110 GCAATGAGGGTGCATGATTTATG 58.696 43.478 0.00 0.00 41.80 1.90
2 3 3.322828 GGCAATGAGGGTGCATGATTTAT 59.677 43.478 0.00 0.00 44.07 1.40
3 4 2.694628 GGCAATGAGGGTGCATGATTTA 59.305 45.455 0.00 0.00 44.07 1.40
5 6 1.117150 GGCAATGAGGGTGCATGATT 58.883 50.000 0.00 0.00 44.07 2.57
6 7 0.032912 TGGCAATGAGGGTGCATGAT 60.033 50.000 0.00 0.00 44.07 2.45
7 8 0.966875 GTGGCAATGAGGGTGCATGA 60.967 55.000 0.00 0.00 44.07 3.07
9 10 0.625316 TAGTGGCAATGAGGGTGCAT 59.375 50.000 0.00 0.00 44.07 3.96
10 11 0.322456 GTAGTGGCAATGAGGGTGCA 60.322 55.000 0.00 0.00 44.07 4.57
11 12 1.369091 CGTAGTGGCAATGAGGGTGC 61.369 60.000 0.00 0.00 41.45 5.01
12 13 0.249120 TCGTAGTGGCAATGAGGGTG 59.751 55.000 0.00 0.00 0.00 4.61
13 14 0.249398 GTCGTAGTGGCAATGAGGGT 59.751 55.000 0.00 0.00 0.00 4.34
14 15 0.249120 TGTCGTAGTGGCAATGAGGG 59.751 55.000 0.00 0.00 0.00 4.30
15 16 2.205074 GATGTCGTAGTGGCAATGAGG 58.795 52.381 0.00 0.00 0.00 3.86
16 17 2.892374 TGATGTCGTAGTGGCAATGAG 58.108 47.619 0.00 0.00 0.00 2.90
17 18 3.326836 TTGATGTCGTAGTGGCAATGA 57.673 42.857 0.00 0.00 0.00 2.57
18 19 4.621068 AATTGATGTCGTAGTGGCAATG 57.379 40.909 0.00 0.00 0.00 2.82
19 20 4.142403 CCAAATTGATGTCGTAGTGGCAAT 60.142 41.667 0.00 0.00 0.00 3.56
20 21 3.190327 CCAAATTGATGTCGTAGTGGCAA 59.810 43.478 0.00 0.00 0.00 4.52
21 22 2.746904 CCAAATTGATGTCGTAGTGGCA 59.253 45.455 0.00 0.00 0.00 4.92
22 23 3.006940 TCCAAATTGATGTCGTAGTGGC 58.993 45.455 0.00 0.00 0.00 5.01
23 24 5.818136 ATTCCAAATTGATGTCGTAGTGG 57.182 39.130 0.00 0.00 0.00 4.00
24 25 9.277565 CTAAAATTCCAAATTGATGTCGTAGTG 57.722 33.333 0.00 0.00 0.00 2.74
25 26 9.226606 TCTAAAATTCCAAATTGATGTCGTAGT 57.773 29.630 0.00 0.00 0.00 2.73
28 29 7.542130 GCTTCTAAAATTCCAAATTGATGTCGT 59.458 33.333 0.00 0.00 0.00 4.34
29 30 7.009540 GGCTTCTAAAATTCCAAATTGATGTCG 59.990 37.037 0.00 0.00 0.00 4.35
30 31 7.818930 TGGCTTCTAAAATTCCAAATTGATGTC 59.181 33.333 0.00 0.00 0.00 3.06
31 32 7.678837 TGGCTTCTAAAATTCCAAATTGATGT 58.321 30.769 0.00 0.00 0.00 3.06
32 33 8.550710 TTGGCTTCTAAAATTCCAAATTGATG 57.449 30.769 0.00 0.00 34.24 3.07
33 34 8.596293 TCTTGGCTTCTAAAATTCCAAATTGAT 58.404 29.630 0.00 0.00 36.49 2.57
34 35 7.961351 TCTTGGCTTCTAAAATTCCAAATTGA 58.039 30.769 0.00 0.00 36.49 2.57
35 36 8.782339 ATCTTGGCTTCTAAAATTCCAAATTG 57.218 30.769 0.00 0.00 36.49 2.32
36 37 8.819845 AGATCTTGGCTTCTAAAATTCCAAATT 58.180 29.630 0.00 0.00 36.49 1.82
37 38 8.371571 AGATCTTGGCTTCTAAAATTCCAAAT 57.628 30.769 0.00 0.00 36.49 2.32
38 39 7.781324 AGATCTTGGCTTCTAAAATTCCAAA 57.219 32.000 0.00 0.00 36.49 3.28
39 40 7.781324 AAGATCTTGGCTTCTAAAATTCCAA 57.219 32.000 7.30 0.00 35.70 3.53
40 41 7.781324 AAAGATCTTGGCTTCTAAAATTCCA 57.219 32.000 9.17 0.00 0.00 3.53
41 42 8.306761 TGAAAAGATCTTGGCTTCTAAAATTCC 58.693 33.333 9.17 0.00 0.00 3.01
42 43 9.133627 GTGAAAAGATCTTGGCTTCTAAAATTC 57.866 33.333 9.17 5.08 0.00 2.17
43 44 7.809806 CGTGAAAAGATCTTGGCTTCTAAAATT 59.190 33.333 9.17 0.00 0.00 1.82
44 45 7.174946 TCGTGAAAAGATCTTGGCTTCTAAAAT 59.825 33.333 9.17 0.00 0.00 1.82
45 46 6.485313 TCGTGAAAAGATCTTGGCTTCTAAAA 59.515 34.615 9.17 0.00 0.00 1.52
46 47 5.995282 TCGTGAAAAGATCTTGGCTTCTAAA 59.005 36.000 9.17 0.00 0.00 1.85
47 48 5.547465 TCGTGAAAAGATCTTGGCTTCTAA 58.453 37.500 9.17 0.00 0.00 2.10
48 49 5.147330 TCGTGAAAAGATCTTGGCTTCTA 57.853 39.130 9.17 0.00 0.00 2.10
49 50 3.999663 CTCGTGAAAAGATCTTGGCTTCT 59.000 43.478 9.17 0.00 0.00 2.85
50 51 3.748568 ACTCGTGAAAAGATCTTGGCTTC 59.251 43.478 9.17 9.84 0.00 3.86
51 52 3.499918 CACTCGTGAAAAGATCTTGGCTT 59.500 43.478 9.17 0.00 0.00 4.35
52 53 3.070018 CACTCGTGAAAAGATCTTGGCT 58.930 45.455 9.17 0.00 0.00 4.75
53 54 3.067106 TCACTCGTGAAAAGATCTTGGC 58.933 45.455 9.17 4.83 36.53 4.52
54 55 4.310769 ACTCACTCGTGAAAAGATCTTGG 58.689 43.478 9.17 0.00 39.39 3.61
55 56 5.914085 AACTCACTCGTGAAAAGATCTTG 57.086 39.130 9.17 0.00 39.39 3.02
56 57 6.538742 TGAAAACTCACTCGTGAAAAGATCTT 59.461 34.615 0.88 0.88 39.39 2.40
57 58 6.049149 TGAAAACTCACTCGTGAAAAGATCT 58.951 36.000 1.02 0.00 39.39 2.75
58 59 6.287107 TGAAAACTCACTCGTGAAAAGATC 57.713 37.500 1.02 0.00 39.39 2.75
59 60 6.677781 TTGAAAACTCACTCGTGAAAAGAT 57.322 33.333 1.02 0.00 39.39 2.40
60 61 6.677781 ATTGAAAACTCACTCGTGAAAAGA 57.322 33.333 1.02 0.00 39.39 2.52
61 62 7.164826 CAGAATTGAAAACTCACTCGTGAAAAG 59.835 37.037 1.02 0.00 39.39 2.27
62 63 6.966632 CAGAATTGAAAACTCACTCGTGAAAA 59.033 34.615 1.02 0.00 39.39 2.29
63 64 6.315144 TCAGAATTGAAAACTCACTCGTGAAA 59.685 34.615 1.02 0.00 39.39 2.69
64 65 5.815222 TCAGAATTGAAAACTCACTCGTGAA 59.185 36.000 1.02 0.00 39.39 3.18
65 66 5.356426 TCAGAATTGAAAACTCACTCGTGA 58.644 37.500 0.00 0.00 38.06 4.35
66 67 5.657470 TCAGAATTGAAAACTCACTCGTG 57.343 39.130 0.00 0.00 0.00 4.35
78 79 7.063898 CGTGAGATCTTAGCTTTCAGAATTGAA 59.936 37.037 0.00 0.00 41.44 2.69
79 80 6.533012 CGTGAGATCTTAGCTTTCAGAATTGA 59.467 38.462 0.00 0.00 0.00 2.57
80 81 6.533012 TCGTGAGATCTTAGCTTTCAGAATTG 59.467 38.462 0.00 0.00 33.31 2.32
81 82 6.634805 TCGTGAGATCTTAGCTTTCAGAATT 58.365 36.000 0.00 0.00 33.31 2.17
82 83 6.214191 TCGTGAGATCTTAGCTTTCAGAAT 57.786 37.500 0.00 0.00 33.31 2.40
83 84 5.644977 TCGTGAGATCTTAGCTTTCAGAA 57.355 39.130 0.00 0.00 33.31 3.02
84 85 5.416013 TCTTCGTGAGATCTTAGCTTTCAGA 59.584 40.000 0.00 0.00 41.60 3.27
85 86 5.514914 GTCTTCGTGAGATCTTAGCTTTCAG 59.485 44.000 0.00 0.00 41.60 3.02
86 87 5.048013 TGTCTTCGTGAGATCTTAGCTTTCA 60.048 40.000 0.00 0.00 41.60 2.69
87 88 5.403246 TGTCTTCGTGAGATCTTAGCTTTC 58.597 41.667 0.00 0.00 41.60 2.62
88 89 5.184096 TCTGTCTTCGTGAGATCTTAGCTTT 59.816 40.000 0.00 0.00 41.60 3.51
89 90 4.702612 TCTGTCTTCGTGAGATCTTAGCTT 59.297 41.667 0.00 0.00 41.60 3.74
90 91 4.265893 TCTGTCTTCGTGAGATCTTAGCT 58.734 43.478 0.00 0.00 41.60 3.32
91 92 4.624336 TCTGTCTTCGTGAGATCTTAGC 57.376 45.455 0.00 0.00 41.60 3.09
92 93 6.429791 TCTTCTGTCTTCGTGAGATCTTAG 57.570 41.667 0.00 0.00 41.60 2.18
93 94 6.183360 CCATCTTCTGTCTTCGTGAGATCTTA 60.183 42.308 0.00 0.00 41.60 2.10
94 95 5.394005 CCATCTTCTGTCTTCGTGAGATCTT 60.394 44.000 0.00 0.00 41.60 2.40
95 96 4.097741 CCATCTTCTGTCTTCGTGAGATCT 59.902 45.833 0.00 0.00 41.60 2.75
96 97 4.358851 CCATCTTCTGTCTTCGTGAGATC 58.641 47.826 0.00 0.00 41.60 2.75
97 98 3.131933 CCCATCTTCTGTCTTCGTGAGAT 59.868 47.826 0.00 0.00 41.60 2.75
98 99 2.493675 CCCATCTTCTGTCTTCGTGAGA 59.506 50.000 0.00 0.00 39.20 3.27
99 100 2.417924 CCCCATCTTCTGTCTTCGTGAG 60.418 54.545 0.00 0.00 0.00 3.51
100 101 1.550524 CCCCATCTTCTGTCTTCGTGA 59.449 52.381 0.00 0.00 0.00 4.35
101 102 2.009042 GCCCCATCTTCTGTCTTCGTG 61.009 57.143 0.00 0.00 0.00 4.35
102 103 0.250513 GCCCCATCTTCTGTCTTCGT 59.749 55.000 0.00 0.00 0.00 3.85
103 104 0.250234 TGCCCCATCTTCTGTCTTCG 59.750 55.000 0.00 0.00 0.00 3.79
104 105 1.556911 TCTGCCCCATCTTCTGTCTTC 59.443 52.381 0.00 0.00 0.00 2.87
105 106 1.280421 GTCTGCCCCATCTTCTGTCTT 59.720 52.381 0.00 0.00 0.00 3.01
106 107 0.908198 GTCTGCCCCATCTTCTGTCT 59.092 55.000 0.00 0.00 0.00 3.41
107 108 0.615331 TGTCTGCCCCATCTTCTGTC 59.385 55.000 0.00 0.00 0.00 3.51
108 109 0.326264 GTGTCTGCCCCATCTTCTGT 59.674 55.000 0.00 0.00 0.00 3.41
109 110 0.742281 CGTGTCTGCCCCATCTTCTG 60.742 60.000 0.00 0.00 0.00 3.02
110 111 1.194781 ACGTGTCTGCCCCATCTTCT 61.195 55.000 0.00 0.00 0.00 2.85
111 112 0.741221 GACGTGTCTGCCCCATCTTC 60.741 60.000 0.00 0.00 0.00 2.87
112 113 1.296715 GACGTGTCTGCCCCATCTT 59.703 57.895 0.00 0.00 0.00 2.40
113 114 2.982130 GACGTGTCTGCCCCATCT 59.018 61.111 0.00 0.00 0.00 2.90
114 115 2.509336 CGACGTGTCTGCCCCATC 60.509 66.667 0.00 0.00 0.00 3.51
115 116 2.994995 TCGACGTGTCTGCCCCAT 60.995 61.111 0.00 0.00 0.00 4.00
116 117 3.986006 GTCGACGTGTCTGCCCCA 61.986 66.667 0.00 0.00 0.00 4.96
117 118 2.781595 ATTGTCGACGTGTCTGCCCC 62.782 60.000 11.62 0.00 0.00 5.80
118 119 1.374252 ATTGTCGACGTGTCTGCCC 60.374 57.895 11.62 0.00 0.00 5.36
119 120 0.666274 TCATTGTCGACGTGTCTGCC 60.666 55.000 11.62 0.00 0.00 4.85
120 121 1.136690 TTCATTGTCGACGTGTCTGC 58.863 50.000 11.62 0.00 0.00 4.26
121 122 3.531982 GTTTTCATTGTCGACGTGTCTG 58.468 45.455 11.62 3.89 0.00 3.51
122 123 2.542595 GGTTTTCATTGTCGACGTGTCT 59.457 45.455 11.62 0.00 0.00 3.41
123 124 2.542595 AGGTTTTCATTGTCGACGTGTC 59.457 45.455 11.62 5.58 0.00 3.67
124 125 2.542595 GAGGTTTTCATTGTCGACGTGT 59.457 45.455 11.62 0.00 0.00 4.49
125 126 2.096417 GGAGGTTTTCATTGTCGACGTG 60.096 50.000 11.62 12.39 0.00 4.49
126 127 2.140717 GGAGGTTTTCATTGTCGACGT 58.859 47.619 11.62 0.00 0.00 4.34
127 128 2.139917 TGGAGGTTTTCATTGTCGACG 58.860 47.619 11.62 0.00 0.00 5.12
128 129 3.751175 TGATGGAGGTTTTCATTGTCGAC 59.249 43.478 9.11 9.11 0.00 4.20
129 130 3.751175 GTGATGGAGGTTTTCATTGTCGA 59.249 43.478 0.00 0.00 0.00 4.20
130 131 3.424829 CGTGATGGAGGTTTTCATTGTCG 60.425 47.826 0.00 0.00 0.00 4.35
131 132 3.751175 TCGTGATGGAGGTTTTCATTGTC 59.249 43.478 0.00 0.00 0.00 3.18
132 133 3.502211 GTCGTGATGGAGGTTTTCATTGT 59.498 43.478 0.00 0.00 0.00 2.71
133 134 3.753272 AGTCGTGATGGAGGTTTTCATTG 59.247 43.478 0.00 0.00 0.00 2.82
134 135 4.003648 GAGTCGTGATGGAGGTTTTCATT 58.996 43.478 0.00 0.00 0.00 2.57
135 136 3.600388 GAGTCGTGATGGAGGTTTTCAT 58.400 45.455 0.00 0.00 0.00 2.57
136 137 2.609491 CGAGTCGTGATGGAGGTTTTCA 60.609 50.000 3.82 0.00 0.00 2.69
137 138 1.993370 CGAGTCGTGATGGAGGTTTTC 59.007 52.381 3.82 0.00 0.00 2.29
138 139 1.616865 TCGAGTCGTGATGGAGGTTTT 59.383 47.619 13.12 0.00 0.00 2.43
139 140 1.254026 TCGAGTCGTGATGGAGGTTT 58.746 50.000 13.12 0.00 0.00 3.27
140 141 1.135139 CATCGAGTCGTGATGGAGGTT 59.865 52.381 13.12 0.00 39.61 3.50
141 142 0.741326 CATCGAGTCGTGATGGAGGT 59.259 55.000 13.12 0.00 39.61 3.85
142 143 0.596083 GCATCGAGTCGTGATGGAGG 60.596 60.000 13.12 0.00 42.73 4.30
143 144 0.596083 GGCATCGAGTCGTGATGGAG 60.596 60.000 13.12 0.00 42.73 3.86
144 145 1.437573 GGCATCGAGTCGTGATGGA 59.562 57.895 13.12 0.00 42.73 3.41
145 146 1.946156 CGGCATCGAGTCGTGATGG 60.946 63.158 13.12 0.24 42.73 3.51
146 147 1.946156 CCGGCATCGAGTCGTGATG 60.946 63.158 13.12 10.91 45.80 3.07
147 148 2.413351 CCGGCATCGAGTCGTGAT 59.587 61.111 13.12 0.00 45.80 3.06
148 149 3.060000 ACCGGCATCGAGTCGTGA 61.060 61.111 13.12 0.00 45.80 4.35
149 150 2.880879 CACCGGCATCGAGTCGTG 60.881 66.667 13.12 11.12 45.80 4.35
150 151 4.129737 CCACCGGCATCGAGTCGT 62.130 66.667 13.12 0.00 45.80 4.34
161 162 2.828549 GGTAATGCTGCCCACCGG 60.829 66.667 0.00 0.00 0.00 5.28
162 163 1.376609 GAAGGTAATGCTGCCCACCG 61.377 60.000 0.00 0.00 36.14 4.94
163 164 1.037579 GGAAGGTAATGCTGCCCACC 61.038 60.000 0.00 1.56 0.00 4.61
164 165 0.034089 AGGAAGGTAATGCTGCCCAC 60.034 55.000 0.00 0.00 0.00 4.61
165 166 0.704076 AAGGAAGGTAATGCTGCCCA 59.296 50.000 0.00 0.00 0.00 5.36
166 167 1.478105 CAAAGGAAGGTAATGCTGCCC 59.522 52.381 0.00 0.00 0.00 5.36
167 168 2.094545 CACAAAGGAAGGTAATGCTGCC 60.095 50.000 0.00 0.00 0.00 4.85
168 169 2.094545 CCACAAAGGAAGGTAATGCTGC 60.095 50.000 0.00 0.00 41.22 5.25
169 170 2.493278 CCCACAAAGGAAGGTAATGCTG 59.507 50.000 0.00 0.00 41.22 4.41
170 171 2.807676 CCCACAAAGGAAGGTAATGCT 58.192 47.619 0.00 0.00 41.22 3.79
171 172 1.204704 GCCCACAAAGGAAGGTAATGC 59.795 52.381 0.00 0.00 41.22 3.56
172 173 1.472480 CGCCCACAAAGGAAGGTAATG 59.528 52.381 0.00 0.00 41.22 1.90
173 174 1.834188 CGCCCACAAAGGAAGGTAAT 58.166 50.000 0.00 0.00 41.22 1.89
174 175 0.891904 GCGCCCACAAAGGAAGGTAA 60.892 55.000 0.00 0.00 41.22 2.85
175 176 1.302993 GCGCCCACAAAGGAAGGTA 60.303 57.895 0.00 0.00 41.22 3.08
176 177 2.597510 GCGCCCACAAAGGAAGGT 60.598 61.111 0.00 0.00 41.22 3.50
177 178 2.597217 TGCGCCCACAAAGGAAGG 60.597 61.111 4.18 0.00 41.22 3.46
178 179 1.898574 AGTGCGCCCACAAAGGAAG 60.899 57.895 4.18 0.00 44.53 3.46
179 180 2.192861 CAGTGCGCCCACAAAGGAA 61.193 57.895 4.18 0.00 44.53 3.36
180 181 2.594303 CAGTGCGCCCACAAAGGA 60.594 61.111 4.18 0.00 44.53 3.36
181 182 3.673484 CCAGTGCGCCCACAAAGG 61.673 66.667 4.18 0.00 44.53 3.11
182 183 3.673484 CCCAGTGCGCCCACAAAG 61.673 66.667 4.18 0.00 44.53 2.77
193 194 4.511246 ATGCCCGCATCCCCAGTG 62.511 66.667 0.00 0.00 29.42 3.66
194 195 4.511246 CATGCCCGCATCCCCAGT 62.511 66.667 0.00 0.00 33.90 4.00
197 198 4.521292 TTCCATGCCCGCATCCCC 62.521 66.667 0.00 0.00 33.90 4.81
198 199 2.908940 CTTCCATGCCCGCATCCC 60.909 66.667 0.00 0.00 33.90 3.85
199 200 2.908940 CCTTCCATGCCCGCATCC 60.909 66.667 0.00 0.00 33.90 3.51
200 201 2.908940 CCCTTCCATGCCCGCATC 60.909 66.667 0.00 0.00 33.90 3.91
201 202 3.419580 TCCCTTCCATGCCCGCAT 61.420 61.111 0.00 0.00 37.08 4.73
202 203 4.113815 CTCCCTTCCATGCCCGCA 62.114 66.667 0.00 0.00 0.00 5.69
203 204 3.764160 CTCTCCCTTCCATGCCCGC 62.764 68.421 0.00 0.00 0.00 6.13
204 205 2.507944 CTCTCCCTTCCATGCCCG 59.492 66.667 0.00 0.00 0.00 6.13
205 206 1.988982 GACCTCTCCCTTCCATGCCC 61.989 65.000 0.00 0.00 0.00 5.36
206 207 1.274703 TGACCTCTCCCTTCCATGCC 61.275 60.000 0.00 0.00 0.00 4.40
207 208 0.179936 CTGACCTCTCCCTTCCATGC 59.820 60.000 0.00 0.00 0.00 4.06
208 209 1.577736 ACTGACCTCTCCCTTCCATG 58.422 55.000 0.00 0.00 0.00 3.66
209 210 2.350863 AACTGACCTCTCCCTTCCAT 57.649 50.000 0.00 0.00 0.00 3.41
210 211 2.118403 AAACTGACCTCTCCCTTCCA 57.882 50.000 0.00 0.00 0.00 3.53
211 212 3.510531 AAAAACTGACCTCTCCCTTCC 57.489 47.619 0.00 0.00 0.00 3.46
228 229 4.021192 GGCATCTCCAATTCCTGTGAAAAA 60.021 41.667 0.00 0.00 32.06 1.94
229 230 3.511146 GGCATCTCCAATTCCTGTGAAAA 59.489 43.478 0.00 0.00 32.06 2.29
230 231 3.091545 GGCATCTCCAATTCCTGTGAAA 58.908 45.455 0.00 0.00 32.06 2.69
231 232 2.309755 AGGCATCTCCAATTCCTGTGAA 59.690 45.455 0.00 0.00 37.29 3.18
232 233 1.918262 AGGCATCTCCAATTCCTGTGA 59.082 47.619 0.00 0.00 37.29 3.58
233 234 2.426024 CAAGGCATCTCCAATTCCTGTG 59.574 50.000 0.00 0.00 37.29 3.66
234 235 2.042162 ACAAGGCATCTCCAATTCCTGT 59.958 45.455 0.00 0.00 37.29 4.00
235 236 2.731572 ACAAGGCATCTCCAATTCCTG 58.268 47.619 0.00 0.00 37.29 3.86
236 237 4.591321 TTACAAGGCATCTCCAATTCCT 57.409 40.909 0.00 0.00 37.29 3.36
237 238 5.506317 CGAATTACAAGGCATCTCCAATTCC 60.506 44.000 0.00 0.00 37.29 3.01
238 239 5.066505 ACGAATTACAAGGCATCTCCAATTC 59.933 40.000 0.00 0.00 37.29 2.17
239 240 4.949856 ACGAATTACAAGGCATCTCCAATT 59.050 37.500 0.00 0.00 37.29 2.32
240 241 4.526970 ACGAATTACAAGGCATCTCCAAT 58.473 39.130 0.00 0.00 37.29 3.16
241 242 3.950397 ACGAATTACAAGGCATCTCCAA 58.050 40.909 0.00 0.00 37.29 3.53
242 243 3.627395 ACGAATTACAAGGCATCTCCA 57.373 42.857 0.00 0.00 37.29 3.86
243 244 5.758296 TCATTACGAATTACAAGGCATCTCC 59.242 40.000 0.00 0.00 0.00 3.71
244 245 6.257849 TGTCATTACGAATTACAAGGCATCTC 59.742 38.462 0.00 0.00 0.00 2.75
245 246 6.112734 TGTCATTACGAATTACAAGGCATCT 58.887 36.000 0.00 0.00 0.00 2.90
246 247 6.358118 TGTCATTACGAATTACAAGGCATC 57.642 37.500 0.00 0.00 0.00 3.91
247 248 6.942532 ATGTCATTACGAATTACAAGGCAT 57.057 33.333 0.00 0.00 29.67 4.40
248 249 6.751514 AATGTCATTACGAATTACAAGGCA 57.248 33.333 0.00 0.00 29.67 4.75
249 250 6.410914 CGAAATGTCATTACGAATTACAAGGC 59.589 38.462 0.00 0.00 29.67 4.35
250 251 6.905076 CCGAAATGTCATTACGAATTACAAGG 59.095 38.462 0.00 0.00 29.67 3.61
251 252 6.905076 CCCGAAATGTCATTACGAATTACAAG 59.095 38.462 0.00 0.00 29.67 3.16
252 253 6.594547 TCCCGAAATGTCATTACGAATTACAA 59.405 34.615 0.00 0.00 29.67 2.41
253 254 6.107343 TCCCGAAATGTCATTACGAATTACA 58.893 36.000 0.00 0.00 30.36 2.41
254 255 6.592798 TCCCGAAATGTCATTACGAATTAC 57.407 37.500 0.00 0.00 0.00 1.89
255 256 6.764085 ACATCCCGAAATGTCATTACGAATTA 59.236 34.615 0.00 0.00 34.84 1.40
256 257 5.588648 ACATCCCGAAATGTCATTACGAATT 59.411 36.000 0.00 0.00 34.84 2.17
257 258 5.007626 CACATCCCGAAATGTCATTACGAAT 59.992 40.000 0.00 0.00 37.78 3.34
258 259 4.331443 CACATCCCGAAATGTCATTACGAA 59.669 41.667 0.00 0.00 37.78 3.85
259 260 3.868661 CACATCCCGAAATGTCATTACGA 59.131 43.478 0.00 0.00 37.78 3.43
260 261 3.002246 CCACATCCCGAAATGTCATTACG 59.998 47.826 0.00 0.00 37.78 3.18
263 264 3.085952 ACCACATCCCGAAATGTCATT 57.914 42.857 0.00 0.00 37.78 2.57
267 268 5.130477 ACTCTAATACCACATCCCGAAATGT 59.870 40.000 0.00 0.00 40.49 2.71
339 342 4.654262 TGGGCTCGGAATTATCTAGTTCTT 59.346 41.667 0.00 0.00 0.00 2.52
341 344 4.602340 TGGGCTCGGAATTATCTAGTTC 57.398 45.455 0.00 0.00 0.00 3.01
368 371 4.826183 GGGATTCAATTCTCAGGATTCCAG 59.174 45.833 5.29 0.00 34.38 3.86
389 392 1.107945 GAGACGGAGAAAGAGGAGGG 58.892 60.000 0.00 0.00 0.00 4.30
430 433 2.722201 GGTACCTGGACTGGAGCCG 61.722 68.421 4.06 0.00 0.00 5.52
431 434 3.310652 GGTACCTGGACTGGAGCC 58.689 66.667 4.06 0.65 0.00 4.70
491 494 1.077265 CATGGTTTGGAGGGTGGCT 59.923 57.895 0.00 0.00 0.00 4.75
528 537 2.038490 GGAGGGTCGGGGTACAGT 59.962 66.667 0.00 0.00 0.00 3.55
642 651 3.813166 GAGAAATTCAACACCGGAGACAA 59.187 43.478 9.46 0.00 0.00 3.18
705 714 0.981183 TGATTTGTCCCTAGTGGCGT 59.019 50.000 0.00 0.00 0.00 5.68
742 751 3.222354 GACTCGCACCTTCCACGGT 62.222 63.158 0.00 0.00 37.93 4.83
746 755 0.247460 CTGATGACTCGCACCTTCCA 59.753 55.000 0.00 0.00 0.00 3.53
753 762 1.067669 GAGCATACCTGATGACTCGCA 59.932 52.381 0.00 0.00 37.82 5.10
755 764 4.731720 CATAGAGCATACCTGATGACTCG 58.268 47.826 0.00 0.00 40.62 4.18
810 826 4.810491 GCAATGTTGGACTGATTTTGTGTT 59.190 37.500 0.00 0.00 0.00 3.32
811 827 4.370917 GCAATGTTGGACTGATTTTGTGT 58.629 39.130 0.00 0.00 0.00 3.72
830 846 5.787953 TCTTCAACATTGAATCTTGGCAA 57.212 34.783 7.48 0.00 45.26 4.52
856 872 5.405571 GTCACAAATCACTGTCTCATTACGT 59.594 40.000 0.00 0.00 0.00 3.57
864 880 5.489792 ACATAGGTCACAAATCACTGTCT 57.510 39.130 0.00 0.00 0.00 3.41
867 883 8.267620 TGATAAACATAGGTCACAAATCACTG 57.732 34.615 0.00 0.00 0.00 3.66
893 909 8.324306 TGGAGATACTCAAGATGAAAACAGAAT 58.676 33.333 0.00 0.00 31.08 2.40
896 912 7.912056 TTGGAGATACTCAAGATGAAAACAG 57.088 36.000 0.00 0.00 31.08 3.16
897 913 7.094634 GCTTTGGAGATACTCAAGATGAAAACA 60.095 37.037 0.00 0.00 31.08 2.83
898 914 7.120432 AGCTTTGGAGATACTCAAGATGAAAAC 59.880 37.037 0.00 0.00 31.08 2.43
909 925 6.102897 TGGCTATAAGCTTTGGAGATACTC 57.897 41.667 3.20 0.00 41.99 2.59
912 928 7.236432 AGAGATTGGCTATAAGCTTTGGAGATA 59.764 37.037 3.20 0.00 41.99 1.98
913 929 6.044171 AGAGATTGGCTATAAGCTTTGGAGAT 59.956 38.462 3.20 0.00 41.99 2.75
915 931 5.469421 CAGAGATTGGCTATAAGCTTTGGAG 59.531 44.000 3.20 0.58 41.99 3.86
1142 1158 0.502275 GCACATTTTTCACAACGCCG 59.498 50.000 0.00 0.00 0.00 6.46
1143 1159 0.502275 CGCACATTTTTCACAACGCC 59.498 50.000 0.00 0.00 0.00 5.68
1144 1160 1.072219 CACGCACATTTTTCACAACGC 60.072 47.619 0.00 0.00 0.00 4.84
1145 1161 2.445316 TCACGCACATTTTTCACAACG 58.555 42.857 0.00 0.00 0.00 4.10
1146 1162 3.690422 TCTCACGCACATTTTTCACAAC 58.310 40.909 0.00 0.00 0.00 3.32
1147 1163 4.142491 ACTTCTCACGCACATTTTTCACAA 60.142 37.500 0.00 0.00 0.00 3.33
1148 1164 3.376859 ACTTCTCACGCACATTTTTCACA 59.623 39.130 0.00 0.00 0.00 3.58
1163 1179 3.008266 TGATCTCCACATTGCACTTCTCA 59.992 43.478 0.00 0.00 0.00 3.27
1187 1203 1.079819 CGACAGCACGTGATCCCTT 60.080 57.895 22.23 0.00 0.00 3.95
1248 1264 2.048222 CTCAGAACGGGCGAGCAA 60.048 61.111 0.00 0.00 0.00 3.91
1265 1281 3.756434 TCTTGTTTCGATCCCATCCAAAC 59.244 43.478 0.00 1.15 39.71 2.93
1305 1321 2.749621 ACGTTTTCCAAGCATCCTCATC 59.250 45.455 0.00 0.00 0.00 2.92
1324 1340 3.385433 TGTATACCCCACCTGAATGTACG 59.615 47.826 0.00 0.00 0.00 3.67
1344 1360 8.553696 AGTAAGAAACAATACGAACGAATTTGT 58.446 29.630 0.14 0.00 36.36 2.83
1345 1361 8.827599 CAGTAAGAAACAATACGAACGAATTTG 58.172 33.333 0.14 4.52 0.00 2.32
1356 1372 6.197842 CGTCGTATCCCAGTAAGAAACAATAC 59.802 42.308 0.00 0.00 0.00 1.89
1380 1396 9.809096 ATGTGAACCATATATAAGCTAGAATCG 57.191 33.333 0.00 0.00 29.82 3.34
1413 1429 9.546428 AGCTGCTTTGTTTTTCTGTAAAATAAT 57.454 25.926 0.00 0.00 36.91 1.28
1421 1437 2.543641 GCAGCTGCTTTGTTTTTCTGT 58.456 42.857 31.33 0.00 38.21 3.41
1450 1466 9.492973 CATCCCAATTCTTGATAACTTTGTTTT 57.507 29.630 0.00 0.00 0.00 2.43
1533 1549 2.159142 CCATTTCTTGGGCATTCTCAGC 60.159 50.000 0.00 0.00 42.33 4.26
1568 1584 1.860641 TAAGCTCCCGGACATCTTCA 58.139 50.000 0.73 0.00 0.00 3.02
1571 1587 2.398588 TGAATAAGCTCCCGGACATCT 58.601 47.619 0.73 0.00 0.00 2.90
1673 1689 2.900546 TGTTCTGAACCTCTTCCTCCTC 59.099 50.000 17.26 0.00 0.00 3.71
1741 1757 5.179555 GGTTCATTTGGCTTCGTAGATATCC 59.820 44.000 0.00 0.00 35.04 2.59
1750 1766 1.394917 CTCGAGGTTCATTTGGCTTCG 59.605 52.381 3.91 0.00 0.00 3.79
1781 1797 4.133078 AGATTTCCTTCGGAGATGCATTC 58.867 43.478 0.00 0.28 35.04 2.67
1793 1809 1.541588 AGTGCCGCAAAGATTTCCTTC 59.458 47.619 0.00 0.00 33.02 3.46
1862 1878 1.333931 CGGTCGCTGCTAGTGAGAATA 59.666 52.381 0.00 0.00 35.09 1.75
1910 1926 5.252586 ACCAATCCTTCCTCATATCCATG 57.747 43.478 0.00 0.00 0.00 3.66
1916 1932 5.715439 ACATCAACCAATCCTTCCTCATA 57.285 39.130 0.00 0.00 0.00 2.15
1965 1981 9.413048 GACTACTGATAAATCTGCCATAACTAC 57.587 37.037 0.00 0.00 0.00 2.73
1966 1982 9.368416 AGACTACTGATAAATCTGCCATAACTA 57.632 33.333 0.00 0.00 0.00 2.24
1967 1983 8.256356 AGACTACTGATAAATCTGCCATAACT 57.744 34.615 0.00 0.00 0.00 2.24
1968 1984 8.768955 CAAGACTACTGATAAATCTGCCATAAC 58.231 37.037 0.00 0.00 0.00 1.89
1969 1985 8.486210 ACAAGACTACTGATAAATCTGCCATAA 58.514 33.333 0.00 0.00 0.00 1.90
2001 2017 8.458843 GCAAATATCTTGGACAAAGCTAGTTTA 58.541 33.333 0.00 0.00 35.69 2.01
2053 2072 8.218488 TCAGTACTTGCATAGATAGAAGTAGGA 58.782 37.037 0.00 0.00 32.83 2.94
2054 2073 8.397575 TCAGTACTTGCATAGATAGAAGTAGG 57.602 38.462 0.00 0.00 32.83 3.18
2055 2074 9.891828 CTTCAGTACTTGCATAGATAGAAGTAG 57.108 37.037 0.00 0.00 32.83 2.57
2056 2075 9.409918 ACTTCAGTACTTGCATAGATAGAAGTA 57.590 33.333 15.79 4.02 39.84 2.24
2057 2076 8.299990 ACTTCAGTACTTGCATAGATAGAAGT 57.700 34.615 13.11 13.11 37.66 3.01
2058 2077 7.589587 CGACTTCAGTACTTGCATAGATAGAAG 59.410 40.741 12.15 12.15 35.96 2.85
2078 2097 2.223377 AGAATCCAAAACACGCGACTTC 59.777 45.455 15.93 1.97 0.00 3.01
2118 2137 7.877612 TGACAATGTTACATACAGAAGTGACAT 59.122 33.333 0.00 0.00 43.88 3.06
2124 2145 7.041440 TGGTGTTGACAATGTTACATACAGAAG 60.041 37.037 0.00 0.00 40.83 2.85
2126 2147 6.292150 TGGTGTTGACAATGTTACATACAGA 58.708 36.000 0.00 0.00 40.83 3.41
2154 2175 1.266718 CACACACAGTTGTATGCACCC 59.733 52.381 0.00 0.00 33.30 4.61
2187 2208 0.740737 AATTCAGGGCATGCGTTAGC 59.259 50.000 12.44 0.00 45.41 3.09
2190 2211 1.216178 GCAATTCAGGGCATGCGTT 59.784 52.632 12.44 0.00 0.00 4.84
2213 2234 1.811965 TGCAATGTCGCTGTATTTGCT 59.188 42.857 7.37 0.00 0.00 3.91
2278 2299 7.386059 TGCAGTCACTTGTTGAAATATCTAGA 58.614 34.615 0.00 0.00 35.39 2.43
2279 2300 7.601073 TGCAGTCACTTGTTGAAATATCTAG 57.399 36.000 0.00 0.00 35.39 2.43
2280 2301 9.098355 GTATGCAGTCACTTGTTGAAATATCTA 57.902 33.333 0.00 0.00 35.39 1.98
2281 2302 7.607607 TGTATGCAGTCACTTGTTGAAATATCT 59.392 33.333 0.00 0.00 35.39 1.98
2282 2303 7.751732 TGTATGCAGTCACTTGTTGAAATATC 58.248 34.615 0.00 0.00 35.39 1.63
2283 2304 7.607607 TCTGTATGCAGTCACTTGTTGAAATAT 59.392 33.333 10.80 0.00 43.05 1.28
2284 2305 6.934083 TCTGTATGCAGTCACTTGTTGAAATA 59.066 34.615 10.80 0.00 43.05 1.40
2285 2306 5.764686 TCTGTATGCAGTCACTTGTTGAAAT 59.235 36.000 10.80 0.00 43.05 2.17
2286 2307 5.122519 TCTGTATGCAGTCACTTGTTGAAA 58.877 37.500 10.80 0.00 43.05 2.69
2287 2308 4.702831 TCTGTATGCAGTCACTTGTTGAA 58.297 39.130 10.80 0.00 43.05 2.69
2288 2309 4.309933 CTCTGTATGCAGTCACTTGTTGA 58.690 43.478 10.80 0.00 43.05 3.18
2289 2310 3.120408 GCTCTGTATGCAGTCACTTGTTG 60.120 47.826 10.80 0.00 43.05 3.33
2290 2311 3.070018 GCTCTGTATGCAGTCACTTGTT 58.930 45.455 10.80 0.00 43.05 2.83
2291 2312 2.037641 TGCTCTGTATGCAGTCACTTGT 59.962 45.455 10.80 0.00 43.05 3.16
2292 2313 2.691927 TGCTCTGTATGCAGTCACTTG 58.308 47.619 10.80 0.00 43.05 3.16
2293 2314 3.407424 TTGCTCTGTATGCAGTCACTT 57.593 42.857 10.80 0.00 43.05 3.16
2294 2315 3.407424 TTTGCTCTGTATGCAGTCACT 57.593 42.857 10.80 0.00 43.05 3.41
2295 2316 4.154737 TCATTTTGCTCTGTATGCAGTCAC 59.845 41.667 10.80 2.57 43.05 3.67
2296 2317 4.325972 TCATTTTGCTCTGTATGCAGTCA 58.674 39.130 10.80 7.44 43.05 3.41
2297 2318 4.394300 ACTCATTTTGCTCTGTATGCAGTC 59.606 41.667 10.80 5.00 43.05 3.51
2298 2319 4.155462 CACTCATTTTGCTCTGTATGCAGT 59.845 41.667 10.80 0.00 43.05 4.40
2299 2320 4.393990 TCACTCATTTTGCTCTGTATGCAG 59.606 41.667 4.14 4.14 41.71 4.41
2300 2321 4.325972 TCACTCATTTTGCTCTGTATGCA 58.674 39.130 0.00 0.00 38.80 3.96
2301 2322 4.952262 TCACTCATTTTGCTCTGTATGC 57.048 40.909 0.00 0.00 0.00 3.14
2302 2323 7.317842 AGATTCACTCATTTTGCTCTGTATG 57.682 36.000 0.00 0.00 0.00 2.39
2303 2324 8.043113 TGTAGATTCACTCATTTTGCTCTGTAT 58.957 33.333 0.00 0.00 0.00 2.29
2304 2325 7.331934 GTGTAGATTCACTCATTTTGCTCTGTA 59.668 37.037 0.00 0.00 35.68 2.74
2305 2326 6.148480 GTGTAGATTCACTCATTTTGCTCTGT 59.852 38.462 0.00 0.00 35.68 3.41
2306 2327 6.370994 AGTGTAGATTCACTCATTTTGCTCTG 59.629 38.462 0.00 0.00 44.07 3.35
2307 2328 6.471146 AGTGTAGATTCACTCATTTTGCTCT 58.529 36.000 0.00 0.00 44.07 4.09
2308 2329 6.734104 AGTGTAGATTCACTCATTTTGCTC 57.266 37.500 0.00 0.00 44.07 4.26
2363 2384 8.739972 GCCTTTTTAGAGATTTCAAATGGACTA 58.260 33.333 0.00 0.00 0.00 2.59
2364 2385 7.233348 TGCCTTTTTAGAGATTTCAAATGGACT 59.767 33.333 0.00 0.00 0.00 3.85
2365 2386 7.378181 TGCCTTTTTAGAGATTTCAAATGGAC 58.622 34.615 0.00 0.55 0.00 4.02
2366 2387 7.537596 TGCCTTTTTAGAGATTTCAAATGGA 57.462 32.000 0.00 0.00 0.00 3.41
2367 2388 8.606040 TTTGCCTTTTTAGAGATTTCAAATGG 57.394 30.769 0.00 0.00 0.00 3.16
2378 2399 9.503427 CGTTCCTAAATATTTGCCTTTTTAGAG 57.497 33.333 11.05 0.00 34.90 2.43
2379 2400 8.463607 CCGTTCCTAAATATTTGCCTTTTTAGA 58.536 33.333 11.05 0.00 34.90 2.10
2380 2401 7.704899 CCCGTTCCTAAATATTTGCCTTTTTAG 59.295 37.037 11.05 0.00 33.47 1.85
2381 2402 7.363968 CCCCGTTCCTAAATATTTGCCTTTTTA 60.364 37.037 11.05 0.00 0.00 1.52
2382 2403 6.403049 CCCGTTCCTAAATATTTGCCTTTTT 58.597 36.000 11.05 0.00 0.00 1.94
2383 2404 5.105106 CCCCGTTCCTAAATATTTGCCTTTT 60.105 40.000 11.05 0.00 0.00 2.27
2384 2405 4.404394 CCCCGTTCCTAAATATTTGCCTTT 59.596 41.667 11.05 0.00 0.00 3.11
2385 2406 3.958147 CCCCGTTCCTAAATATTTGCCTT 59.042 43.478 11.05 0.00 0.00 4.35
2386 2407 3.562182 CCCCGTTCCTAAATATTTGCCT 58.438 45.455 11.05 0.00 0.00 4.75
2387 2408 2.626266 CCCCCGTTCCTAAATATTTGCC 59.374 50.000 11.05 0.00 0.00 4.52
2405 2426 6.541278 GTGTCAAATTTACATACTACTCCCCC 59.459 42.308 0.00 0.00 0.00 5.40
2406 2427 7.065443 GTGTGTCAAATTTACATACTACTCCCC 59.935 40.741 14.48 0.00 36.41 4.81
2407 2428 7.822822 AGTGTGTCAAATTTACATACTACTCCC 59.177 37.037 18.99 0.00 44.41 4.30
2408 2429 8.656849 CAGTGTGTCAAATTTACATACTACTCC 58.343 37.037 19.50 0.23 44.43 3.85
2409 2430 9.419297 TCAGTGTGTCAAATTTACATACTACTC 57.581 33.333 19.50 8.05 44.43 2.59
2410 2431 9.772973 TTCAGTGTGTCAAATTTACATACTACT 57.227 29.630 19.50 12.12 44.43 2.57
2438 2459 9.472361 CAATATTAAAAGATGAAAGGATGCCAG 57.528 33.333 0.00 0.00 0.00 4.85
2440 2461 7.386025 GGCAATATTAAAAGATGAAAGGATGCC 59.614 37.037 0.00 0.00 39.21 4.40
2452 2473 8.644374 AGTTTGTGTAGGGCAATATTAAAAGA 57.356 30.769 0.00 0.00 0.00 2.52
2463 2484 4.425180 TTTGTAGAGTTTGTGTAGGGCA 57.575 40.909 0.00 0.00 0.00 5.36
2505 2526 5.815233 TTACATTTCCAGGCCAATTTCAA 57.185 34.783 5.01 0.00 0.00 2.69
2536 2557 3.195610 ACAGTGCCGAGAGATGAATTGTA 59.804 43.478 0.00 0.00 0.00 2.41
2556 2577 4.039245 GCCCATAACTCTGATAGCAGTACA 59.961 45.833 8.04 0.00 42.84 2.90
2564 2585 6.484288 CCAATATTGGCCCATAACTCTGATA 58.516 40.000 21.32 0.00 42.21 2.15
2565 2586 5.327732 CCAATATTGGCCCATAACTCTGAT 58.672 41.667 21.32 0.00 42.21 2.90
2586 2607 9.790344 ACATTCATATTGAAATTTTTGGAACCA 57.210 25.926 0.00 0.00 40.12 3.67
2613 2634 1.479709 AATCTCTGTCGGGACCTCAG 58.520 55.000 0.00 0.00 0.00 3.35
2623 2644 7.930865 AGGAAGCAGATACATAAAATCTCTGTC 59.069 37.037 0.00 0.00 36.55 3.51
2641 2669 9.202273 GACTTGAATACTTGATATAGGAAGCAG 57.798 37.037 0.00 0.00 0.00 4.24
2647 2675 6.502158 AGGGGGACTTGAATACTTGATATAGG 59.498 42.308 0.00 0.00 0.00 2.57
2672 2702 4.080526 GGAAGGCTATGTACCAAAAGGAGA 60.081 45.833 0.00 0.00 0.00 3.71
2699 2729 3.197790 CATCTTGGTCAGCCGCCG 61.198 66.667 0.00 0.00 37.67 6.46
2705 2735 2.787994 AGAAAGGCACATCTTGGTCAG 58.212 47.619 0.00 0.00 0.00 3.51
2709 2739 2.751806 GGAGAAGAAAGGCACATCTTGG 59.248 50.000 4.50 0.00 37.00 3.61
2710 2740 3.683802 AGGAGAAGAAAGGCACATCTTG 58.316 45.455 4.50 0.00 37.00 3.02
2742 2776 8.034215 AGCTGAGATATATATGCAGTTGTCTTC 58.966 37.037 17.23 5.51 0.00 2.87
2822 2856 8.715191 TTACTTTTGCTGACATTTCAATTGTT 57.285 26.923 5.13 0.00 0.00 2.83
2828 2862 7.652909 CCAAATCTTACTTTTGCTGACATTTCA 59.347 33.333 0.00 0.00 33.66 2.69
2831 2865 7.054491 ACCAAATCTTACTTTTGCTGACATT 57.946 32.000 0.00 0.00 33.66 2.71
2864 2898 8.984891 TTTTGCCTTATGTTGTAGATGATTTG 57.015 30.769 0.00 0.00 0.00 2.32
2870 2904 8.588290 TTACCATTTTGCCTTATGTTGTAGAT 57.412 30.769 0.00 0.00 0.00 1.98
2890 2926 4.947388 GGTACTGAATTCCAGCATTTACCA 59.053 41.667 2.27 0.00 46.81 3.25
2893 2929 5.417580 GGTTGGTACTGAATTCCAGCATTTA 59.582 40.000 2.27 0.00 46.81 1.40
2900 2936 3.396276 TGGAAGGTTGGTACTGAATTCCA 59.604 43.478 2.27 12.78 41.69 3.53
2907 2943 1.468520 CGCAATGGAAGGTTGGTACTG 59.531 52.381 0.00 0.00 0.00 2.74


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.