Multiple sequence alignment - TraesCS2A01G212700

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS2A01G212700 chr2A 100.000 2996 0 0 1 2996 197466536 197463541 0.000000e+00 5533
1 TraesCS2A01G212700 chr2A 93.925 1646 56 26 828 2455 247002451 247004070 0.000000e+00 2446
2 TraesCS2A01G212700 chr2A 91.429 700 47 6 1 699 198993160 198993847 0.000000e+00 948
3 TraesCS2A01G212700 chr2A 91.264 435 31 5 399 828 247001816 247002248 1.200000e-163 586
4 TraesCS2A01G212700 chr2A 86.719 384 46 3 2485 2868 589319892 589320270 3.570000e-114 422
5 TraesCS2A01G212700 chr2D 94.947 1801 47 13 697 2455 182375479 182373681 0.000000e+00 2782
6 TraesCS2A01G212700 chr2D 94.034 1341 42 17 1143 2455 214289406 214288076 0.000000e+00 1999
7 TraesCS2A01G212700 chr2D 90.960 708 52 7 1 699 182377251 182376547 0.000000e+00 942
8 TraesCS2A01G212700 chr2D 94.097 576 27 4 2421 2996 182373569 182373001 0.000000e+00 869
9 TraesCS2A01G212700 chr2D 92.366 393 30 0 9 401 204145383 204144991 7.250000e-156 560
10 TraesCS2A01G212700 chr2D 92.913 381 22 5 399 777 214289840 214289463 1.570000e-152 549
11 TraesCS2A01G212700 chr2B 96.399 1583 40 9 877 2444 238608413 238606833 0.000000e+00 2591
12 TraesCS2A01G212700 chr2B 91.546 485 38 3 9 492 238609444 238608962 0.000000e+00 665
13 TraesCS2A01G212700 chr2B 89.968 309 15 7 577 879 238608946 238608648 4.680000e-103 385
14 TraesCS2A01G212700 chr3A 92.152 395 31 0 9 403 725496135 725495741 2.610000e-155 558
15 TraesCS2A01G212700 chr7A 92.308 390 30 0 9 398 102489949 102490338 3.370000e-154 555
16 TraesCS2A01G212700 chr7A 92.308 390 30 0 9 398 663965068 663965457 3.370000e-154 555
17 TraesCS2A01G212700 chr6B 91.400 407 31 4 9 412 183044681 183044276 3.370000e-154 555
18 TraesCS2A01G212700 chr5D 92.308 390 30 0 9 398 548317618 548318007 3.370000e-154 555
19 TraesCS2A01G212700 chr5A 87.915 422 39 3 2455 2868 687258479 687258896 1.250000e-133 486
20 TraesCS2A01G212700 chr7B 87.037 378 42 4 2456 2831 652146884 652147256 1.280000e-113 420
21 TraesCS2A01G212700 chr7D 85.142 424 40 9 2453 2873 558163013 558163416 2.150000e-111 412
22 TraesCS2A01G212700 chr4A 77.717 184 38 3 2547 2729 655667272 655667453 3.160000e-20 110


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS2A01G212700 chr2A 197463541 197466536 2995 True 5533.000000 5533 100.000000 1 2996 1 chr2A.!!$R1 2995
1 TraesCS2A01G212700 chr2A 247001816 247004070 2254 False 1516.000000 2446 92.594500 399 2455 2 chr2A.!!$F3 2056
2 TraesCS2A01G212700 chr2A 198993160 198993847 687 False 948.000000 948 91.429000 1 699 1 chr2A.!!$F1 698
3 TraesCS2A01G212700 chr2D 182373001 182377251 4250 True 1531.000000 2782 93.334667 1 2996 3 chr2D.!!$R2 2995
4 TraesCS2A01G212700 chr2D 214288076 214289840 1764 True 1274.000000 1999 93.473500 399 2455 2 chr2D.!!$R3 2056
5 TraesCS2A01G212700 chr2B 238606833 238609444 2611 True 1213.666667 2591 92.637667 9 2444 3 chr2B.!!$R1 2435

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
382 399 1.606313 CTCCAATGCACCCGGGTTT 60.606 57.895 27.83 14.31 0.0 3.27 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2296 3841 1.601903 GACAAACAGATTGCGTGTCCA 59.398 47.619 0.0 0.0 43.13 4.02 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
175 183 6.171921 TGGCAAAATGGTGATTTCCAAATAG 58.828 36.000 0.00 0.00 41.09 1.73
191 199 7.292713 TCCAAATAGTGAATAATGCATGCAT 57.707 32.000 27.46 27.46 38.46 3.96
203 211 8.500753 AATAATGCATGCATTGTTCATCTTTT 57.499 26.923 42.30 23.08 45.15 2.27
206 214 4.926832 TGCATGCATTGTTCATCTTTTCAG 59.073 37.500 18.46 0.00 0.00 3.02
220 228 7.307694 TCATCTTTTCAGAATCACGATTTTGG 58.692 34.615 9.63 0.00 34.69 3.28
234 242 6.703607 TCACGATTTTGGCATTTTTGTGTAAT 59.296 30.769 0.00 0.00 0.00 1.89
238 253 7.530190 CGATTTTGGCATTTTTGTGTAATTCAC 59.470 33.333 0.00 0.00 46.31 3.18
348 365 4.685628 ACTTCAAAATAGCATTTTGGCACG 59.314 37.500 22.68 15.26 39.25 5.34
382 399 1.606313 CTCCAATGCACCCGGGTTT 60.606 57.895 27.83 14.31 0.00 3.27
390 407 2.037871 CACCCGGGTTTCAAAGTGG 58.962 57.895 27.83 5.19 0.00 4.00
449 466 4.439057 TCACTGTTACACAACTGAACCTC 58.561 43.478 2.03 0.00 37.14 3.85
457 475 4.451900 ACACAACTGAACCTCTTAAGTGG 58.548 43.478 19.71 19.71 34.99 4.00
498 517 5.106197 GCCACAACATGTATGACTTCATTCA 60.106 40.000 10.82 0.00 37.88 2.57
500 519 6.149973 CCACAACATGTATGACTTCATTCACT 59.850 38.462 10.82 0.00 36.66 3.41
659 680 8.534954 AGGAAAAGTACTACTAGCATGTCATA 57.465 34.615 0.00 0.00 0.00 2.15
666 687 8.191446 AGTACTACTAGCATGTCATACTGTTTG 58.809 37.037 0.00 0.00 0.00 2.93
680 701 4.682778 ACTGTTTGAAGCCAGTAGTACA 57.317 40.909 2.52 0.00 40.03 2.90
722 1813 3.163594 GTCTTTTGTTTCGGATGCATCG 58.836 45.455 20.15 15.03 0.00 3.84
934 2468 7.026631 TGAAGTGTGATTCAAACTCGAAAAT 57.973 32.000 9.94 0.00 36.28 1.82
985 2521 2.034179 TGTGTCACTACCACTTCACTCG 59.966 50.000 4.27 0.00 33.92 4.18
1045 2581 1.953100 TACCCTTACCCTCCTCCCCG 61.953 65.000 0.00 0.00 0.00 5.73
1554 3090 0.320421 GCGGCTTCCACTACTTCACA 60.320 55.000 0.00 0.00 0.00 3.58
2035 3575 0.103937 GATCCGTGGCTTCTCTCAGG 59.896 60.000 0.00 0.00 0.00 3.86
2118 3658 1.737816 GGCATGCCATGATGTCCAC 59.262 57.895 32.08 0.00 35.81 4.02
2226 3767 3.701542 AGATCTGTATCTGCGAGGACAAA 59.298 43.478 0.00 0.00 41.08 2.83
2293 3838 9.811995 TGTATCGTATTTTCAGCATAAAGTACT 57.188 29.630 11.79 0.00 32.41 2.73
2295 3840 8.942338 ATCGTATTTTCAGCATAAAGTACTCA 57.058 30.769 0.00 0.00 32.41 3.41
2296 3841 8.942338 TCGTATTTTCAGCATAAAGTACTCAT 57.058 30.769 0.00 0.00 32.41 2.90
2297 3842 8.817100 TCGTATTTTCAGCATAAAGTACTCATG 58.183 33.333 11.37 11.37 32.41 3.07
2298 3843 8.064222 CGTATTTTCAGCATAAAGTACTCATGG 58.936 37.037 15.54 4.40 32.41 3.66
2299 3844 9.109393 GTATTTTCAGCATAAAGTACTCATGGA 57.891 33.333 15.54 6.13 32.07 3.41
2300 3845 6.985188 TTTCAGCATAAAGTACTCATGGAC 57.015 37.500 15.54 4.25 0.00 4.02
2301 3846 5.675684 TCAGCATAAAGTACTCATGGACA 57.324 39.130 15.54 0.00 0.00 4.02
2302 3847 5.419542 TCAGCATAAAGTACTCATGGACAC 58.580 41.667 15.54 3.47 0.00 3.67
2304 3849 3.001330 GCATAAAGTACTCATGGACACGC 59.999 47.826 15.54 1.42 0.00 5.34
2305 3850 2.831685 AAAGTACTCATGGACACGCA 57.168 45.000 0.00 0.00 0.00 5.24
2306 3851 2.831685 AAGTACTCATGGACACGCAA 57.168 45.000 0.00 0.00 0.00 4.85
2307 3852 3.334583 AAGTACTCATGGACACGCAAT 57.665 42.857 0.00 0.00 0.00 3.56
2312 3857 2.079158 CTCATGGACACGCAATCTGTT 58.921 47.619 0.00 0.00 0.00 3.16
2313 3858 2.485426 CTCATGGACACGCAATCTGTTT 59.515 45.455 0.00 0.00 0.00 2.83
2314 3859 2.226200 TCATGGACACGCAATCTGTTTG 59.774 45.455 0.00 0.00 38.43 2.93
2315 3860 1.674359 TGGACACGCAATCTGTTTGT 58.326 45.000 0.92 0.00 37.65 2.83
2316 3861 1.601903 TGGACACGCAATCTGTTTGTC 59.398 47.619 0.92 0.00 37.65 3.18
2317 3862 1.873591 GGACACGCAATCTGTTTGTCT 59.126 47.619 0.00 0.00 37.36 3.41
2318 3863 2.349817 GGACACGCAATCTGTTTGTCTG 60.350 50.000 0.00 0.01 37.36 3.51
2319 3864 2.287915 GACACGCAATCTGTTTGTCTGT 59.712 45.455 0.92 2.71 37.65 3.41
2320 3865 3.462982 ACACGCAATCTGTTTGTCTGTA 58.537 40.909 0.92 0.00 37.65 2.74
2323 3868 4.024893 CACGCAATCTGTTTGTCTGTAACT 60.025 41.667 0.92 0.00 37.65 2.24
2325 3870 5.065988 ACGCAATCTGTTTGTCTGTAACTTT 59.934 36.000 0.92 0.00 37.65 2.66
2326 3871 5.396362 CGCAATCTGTTTGTCTGTAACTTTG 59.604 40.000 0.92 0.00 37.65 2.77
2328 3873 6.972328 GCAATCTGTTTGTCTGTAACTTTGAA 59.028 34.615 0.92 0.00 37.65 2.69
2329 3874 7.166473 GCAATCTGTTTGTCTGTAACTTTGAAG 59.834 37.037 0.92 0.00 37.65 3.02
2332 3877 8.958119 TCTGTTTGTCTGTAACTTTGAAGTAT 57.042 30.769 0.00 0.00 38.57 2.12
2333 3878 8.826710 TCTGTTTGTCTGTAACTTTGAAGTATG 58.173 33.333 0.00 0.00 38.57 2.39
2334 3879 8.725405 TGTTTGTCTGTAACTTTGAAGTATGA 57.275 30.769 0.00 0.00 38.57 2.15
2338 3883 8.683550 TGTCTGTAACTTTGAAGTATGATACG 57.316 34.615 0.00 0.00 38.57 3.06
2339 3884 8.301720 TGTCTGTAACTTTGAAGTATGATACGT 58.698 33.333 0.00 0.00 38.57 3.57
2340 3885 9.778993 GTCTGTAACTTTGAAGTATGATACGTA 57.221 33.333 0.00 0.00 38.57 3.57
2341 3886 9.778993 TCTGTAACTTTGAAGTATGATACGTAC 57.221 33.333 0.00 0.00 38.57 3.67
2342 3887 9.563898 CTGTAACTTTGAAGTATGATACGTACA 57.436 33.333 0.00 0.00 38.57 2.90
2455 4017 2.162681 GTGAACTTTGGGGGTGATGAG 58.837 52.381 0.00 0.00 0.00 2.90
2456 4018 1.075374 TGAACTTTGGGGGTGATGAGG 59.925 52.381 0.00 0.00 0.00 3.86
2457 4019 0.409484 AACTTTGGGGGTGATGAGGG 59.591 55.000 0.00 0.00 0.00 4.30
2458 4020 0.477597 ACTTTGGGGGTGATGAGGGA 60.478 55.000 0.00 0.00 0.00 4.20
2459 4021 0.704076 CTTTGGGGGTGATGAGGGAA 59.296 55.000 0.00 0.00 0.00 3.97
2516 4223 7.879160 ACCATGTCATAAAACTCAAATTTGCAT 59.121 29.630 13.54 4.34 0.00 3.96
2579 4286 7.339721 GCACAAGACATATATCTACTAGCCCTA 59.660 40.741 0.00 0.00 0.00 3.53
2580 4287 9.244292 CACAAGACATATATCTACTAGCCCTAA 57.756 37.037 0.00 0.00 0.00 2.69
2660 4367 6.043327 CACGAATAGTGTCACAAAAAGACA 57.957 37.500 5.62 0.00 45.51 3.41
2661 4368 6.482835 CACGAATAGTGTCACAAAAAGACAA 58.517 36.000 5.62 0.00 46.50 3.18
2681 4388 7.875971 AGACAAAACCTGAAATGTCACTATTC 58.124 34.615 7.42 0.00 43.53 1.75
2781 4488 3.767673 AGGCTTCTGCACATTCATGATTT 59.232 39.130 0.00 0.00 41.91 2.17
2854 4561 5.069781 TCATCGTATCATGTGATGGTTGGTA 59.930 40.000 5.78 0.00 39.89 3.25
2877 4584 4.672899 TCATGTGATATCTCGGGGTGATA 58.327 43.478 3.98 0.00 0.00 2.15
2922 4629 6.553953 TTTAGGTAATAGCATCACAGACCA 57.446 37.500 0.00 0.00 0.00 4.02
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
126 127 6.425577 TTTTGTGTAGGTCGCATATTTACC 57.574 37.500 0.00 0.00 36.40 2.85
191 199 6.859420 TCGTGATTCTGAAAAGATGAACAA 57.141 33.333 0.00 0.00 0.00 2.83
203 211 5.389859 AAATGCCAAAATCGTGATTCTGA 57.610 34.783 0.00 0.00 0.00 3.27
206 214 6.072733 CACAAAAATGCCAAAATCGTGATTC 58.927 36.000 0.00 0.00 0.00 2.52
234 242 8.747471 TGATGCTGAAATAAATAACCATGTGAA 58.253 29.630 0.00 0.00 0.00 3.18
238 253 9.976511 ATCTTGATGCTGAAATAAATAACCATG 57.023 29.630 0.00 0.00 0.00 3.66
322 339 7.416817 GTGCCAAAATGCTATTTTGAAGTTTT 58.583 30.769 23.97 0.00 40.73 2.43
382 399 5.637387 GTCTCAAAACAAAAAGCCACTTTGA 59.363 36.000 9.12 0.00 37.25 2.69
390 407 7.985634 TGTAAGATGTCTCAAAACAAAAAGC 57.014 32.000 0.00 0.00 31.81 3.51
457 475 3.378112 TGTGGCATTAATAAGTGCTCTGC 59.622 43.478 0.00 0.00 41.04 4.26
498 517 1.972795 AGCCAACCAATGCATGAAAGT 59.027 42.857 0.00 0.00 0.00 2.66
500 519 1.002201 CCAGCCAACCAATGCATGAAA 59.998 47.619 0.00 0.00 0.00 2.69
565 584 7.521871 TTTGCTTTGAAAATGGGCAAATATT 57.478 28.000 9.92 0.00 44.37 1.28
706 1797 1.814793 TTCCGATGCATCCGAAACAA 58.185 45.000 22.82 5.71 0.00 2.83
722 1813 7.277539 GTCAATCCATTCTCATCTCGATATTCC 59.722 40.741 0.00 0.00 0.00 3.01
800 1895 1.780309 TGGGTGTCTGAATTGGACCTT 59.220 47.619 0.00 0.00 33.22 3.50
934 2468 1.203125 GGGGAAGATGGGTTTTGGTGA 60.203 52.381 0.00 0.00 0.00 4.02
1092 2628 1.380785 CACCAGGTACTCCGGCCTA 60.381 63.158 0.00 0.00 34.60 3.93
2035 3575 1.731433 ATCCAGCGCAATGGCATCAC 61.731 55.000 11.47 0.00 40.41 3.06
2292 3837 1.730501 ACAGATTGCGTGTCCATGAG 58.269 50.000 0.00 0.00 0.00 2.90
2293 3838 2.183478 AACAGATTGCGTGTCCATGA 57.817 45.000 0.00 0.00 0.00 3.07
2294 3839 2.030893 ACAAACAGATTGCGTGTCCATG 60.031 45.455 0.00 0.00 43.13 3.66
2295 3840 2.226437 GACAAACAGATTGCGTGTCCAT 59.774 45.455 0.00 0.00 43.13 3.41
2296 3841 1.601903 GACAAACAGATTGCGTGTCCA 59.398 47.619 0.00 0.00 43.13 4.02
2297 3842 1.873591 AGACAAACAGATTGCGTGTCC 59.126 47.619 8.33 0.00 43.13 4.02
2298 3843 2.287915 ACAGACAAACAGATTGCGTGTC 59.712 45.455 0.00 0.00 43.13 3.67
2299 3844 2.288666 ACAGACAAACAGATTGCGTGT 58.711 42.857 0.00 0.00 43.13 4.49
2300 3845 4.024893 AGTTACAGACAAACAGATTGCGTG 60.025 41.667 0.00 0.00 43.13 5.34
2301 3846 4.127171 AGTTACAGACAAACAGATTGCGT 58.873 39.130 0.00 0.00 43.13 5.24
2302 3847 4.732285 AGTTACAGACAAACAGATTGCG 57.268 40.909 0.00 0.00 43.13 4.85
2304 3849 8.184192 ACTTCAAAGTTACAGACAAACAGATTG 58.816 33.333 0.00 0.00 39.58 2.67
2305 3850 8.281212 ACTTCAAAGTTACAGACAAACAGATT 57.719 30.769 0.00 0.00 35.21 2.40
2306 3851 7.865706 ACTTCAAAGTTACAGACAAACAGAT 57.134 32.000 0.00 0.00 35.21 2.90
2307 3852 8.826710 CATACTTCAAAGTTACAGACAAACAGA 58.173 33.333 0.00 0.00 40.37 3.41
2312 3857 9.135843 CGTATCATACTTCAAAGTTACAGACAA 57.864 33.333 0.00 0.00 40.37 3.18
2313 3858 8.301720 ACGTATCATACTTCAAAGTTACAGACA 58.698 33.333 0.00 0.00 40.37 3.41
2314 3859 8.684973 ACGTATCATACTTCAAAGTTACAGAC 57.315 34.615 0.00 0.00 40.37 3.51
2315 3860 9.778993 GTACGTATCATACTTCAAAGTTACAGA 57.221 33.333 0.00 0.00 40.37 3.41
2316 3861 9.563898 TGTACGTATCATACTTCAAAGTTACAG 57.436 33.333 0.00 0.00 40.37 2.74
2320 3865 8.388103 GCAATGTACGTATCATACTTCAAAGTT 58.612 33.333 0.00 0.00 40.37 2.66
2323 3868 7.762159 TGAGCAATGTACGTATCATACTTCAAA 59.238 33.333 0.00 0.00 0.00 2.69
2325 3870 6.801575 TGAGCAATGTACGTATCATACTTCA 58.198 36.000 0.00 6.47 0.00 3.02
2326 3871 7.875316 ATGAGCAATGTACGTATCATACTTC 57.125 36.000 0.00 4.35 0.00 3.01
2328 3873 7.882179 TGTATGAGCAATGTACGTATCATACT 58.118 34.615 27.99 19.61 44.87 2.12
2329 3874 8.021396 TCTGTATGAGCAATGTACGTATCATAC 58.979 37.037 24.64 24.64 44.85 2.39
2332 3877 6.039382 AGTCTGTATGAGCAATGTACGTATCA 59.961 38.462 0.00 0.00 0.00 2.15
2333 3878 6.360947 CAGTCTGTATGAGCAATGTACGTATC 59.639 42.308 0.00 0.00 0.00 2.24
2334 3879 6.039382 TCAGTCTGTATGAGCAATGTACGTAT 59.961 38.462 0.00 0.00 0.00 3.06
2336 3881 4.157840 TCAGTCTGTATGAGCAATGTACGT 59.842 41.667 0.00 0.00 0.00 3.57
2338 3883 5.410924 TGTCAGTCTGTATGAGCAATGTAC 58.589 41.667 0.00 0.00 0.00 2.90
2339 3884 5.659440 TGTCAGTCTGTATGAGCAATGTA 57.341 39.130 0.00 0.00 0.00 2.29
2340 3885 4.541973 TGTCAGTCTGTATGAGCAATGT 57.458 40.909 0.00 0.00 0.00 2.71
2341 3886 5.410746 ACTTTGTCAGTCTGTATGAGCAATG 59.589 40.000 0.00 3.26 0.00 2.82
2342 3887 5.410746 CACTTTGTCAGTCTGTATGAGCAAT 59.589 40.000 0.00 0.00 30.92 3.56
2455 4017 6.045106 TGGTTGGTATCCTAGGATATTTTCCC 59.955 42.308 29.92 24.96 46.81 3.97
2456 4018 7.086685 TGGTTGGTATCCTAGGATATTTTCC 57.913 40.000 29.92 25.27 45.85 3.13
2457 4019 8.383175 TGATGGTTGGTATCCTAGGATATTTTC 58.617 37.037 29.92 18.56 39.04 2.29
2458 4020 8.164070 GTGATGGTTGGTATCCTAGGATATTTT 58.836 37.037 29.92 10.67 39.04 1.82
2459 4021 7.294720 TGTGATGGTTGGTATCCTAGGATATTT 59.705 37.037 29.92 11.04 39.04 1.40
2469 4176 5.003804 GGTATCATGTGATGGTTGGTATCC 58.996 45.833 5.78 0.00 36.05 2.59
2529 4236 9.545105 TGCACATTCACAAATTTTCTTAGATTT 57.455 25.926 0.00 0.00 0.00 2.17
2530 4237 8.981647 GTGCACATTCACAAATTTTCTTAGATT 58.018 29.630 13.17 0.00 36.97 2.40
2531 4238 8.143193 TGTGCACATTCACAAATTTTCTTAGAT 58.857 29.630 17.42 0.00 43.27 1.98
2532 4239 7.487484 TGTGCACATTCACAAATTTTCTTAGA 58.513 30.769 17.42 0.00 43.27 2.10
2533 4240 7.697352 TGTGCACATTCACAAATTTTCTTAG 57.303 32.000 17.42 0.00 43.27 2.18
2594 4301 8.370493 AGTTCTCAATGTGTATTTCGGATATG 57.630 34.615 0.00 0.00 0.00 1.78
2596 4303 9.878667 TTTAGTTCTCAATGTGTATTTCGGATA 57.121 29.630 0.00 0.00 0.00 2.59
2639 4346 7.044314 GGTTTTGTCTTTTTGTGACACTATTCG 60.044 37.037 7.20 0.00 43.13 3.34
2660 4367 7.581213 TGTGAATAGTGACATTTCAGGTTTT 57.419 32.000 1.22 0.00 30.50 2.43
2661 4368 7.231317 ACATGTGAATAGTGACATTTCAGGTTT 59.769 33.333 0.00 0.00 30.14 3.27
2738 4445 5.069383 GCCTTGTTCCTACAAACCCTAAAAA 59.931 40.000 0.00 0.00 43.33 1.94
2759 4466 2.502142 TCATGAATGTGCAGAAGCCT 57.498 45.000 0.00 0.00 41.13 4.58
2823 4530 7.067008 ACCATCACATGATACGATGATACGATA 59.933 37.037 15.70 0.00 39.09 2.92
2826 4533 5.402398 ACCATCACATGATACGATGATACG 58.598 41.667 15.70 0.00 39.09 3.06
2854 4561 3.510459 TCACCCCGAGATATCACATGAT 58.490 45.455 5.32 0.00 38.51 2.45
2898 4605 6.953101 TGGTCTGTGATGCTATTACCTAAAA 58.047 36.000 0.00 0.00 0.00 1.52
2922 4629 2.418368 TGGACTTGTGCAAGTTCACT 57.582 45.000 19.00 0.00 46.86 3.41
2941 4648 2.093181 GGGGTGAGGTTTTGCAAGTTTT 60.093 45.455 0.00 0.00 0.00 2.43


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.