Multiple sequence alignment - TraesCS2A01G211400

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS2A01G211400 chr2A 100.000 2333 0 0 1 2333 195712269 195709937 0.000000e+00 4309.0
1 TraesCS2A01G211400 chr2A 85.333 375 43 7 563 933 337889066 337889432 6.090000e-101 377.0
2 TraesCS2A01G211400 chr2A 84.533 375 46 8 563 933 337772058 337772424 6.130000e-96 361.0
3 TraesCS2A01G211400 chr2A 80.973 452 76 7 6 452 4751991 4752437 1.330000e-92 350.0
4 TraesCS2A01G211400 chr2A 88.764 267 17 6 930 1191 337889494 337889752 4.840000e-82 315.0
5 TraesCS2A01G211400 chr2A 88.390 267 18 7 930 1191 337772486 337772744 2.250000e-80 309.0
6 TraesCS2A01G211400 chr4A 97.447 1645 26 2 689 2333 585556483 585558111 0.000000e+00 2791.0
7 TraesCS2A01G211400 chr4A 96.468 453 16 0 1 453 21023353 21023805 0.000000e+00 749.0
8 TraesCS2A01G211400 chr4A 80.752 452 78 6 6 453 693359180 693359626 6.170000e-91 344.0
9 TraesCS2A01G211400 chr4A 86.822 258 31 3 563 818 710210238 710209982 3.790000e-73 285.0
10 TraesCS2A01G211400 chr4A 97.196 107 2 1 454 560 585551210 585551315 1.840000e-41 180.0
11 TraesCS2A01G211400 chr4A 92.079 101 2 3 608 704 585556279 585556377 1.120000e-28 137.0
12 TraesCS2A01G211400 chr7A 87.830 1438 101 37 933 2333 318754996 318753596 0.000000e+00 1618.0
13 TraesCS2A01G211400 chr7A 87.654 1377 97 34 993 2333 31088256 31086917 0.000000e+00 1533.0
14 TraesCS2A01G211400 chr3A 90.909 715 47 10 930 1644 28399093 28399789 0.000000e+00 944.0
15 TraesCS2A01G211400 chr3A 90.221 634 42 8 1712 2333 28399916 28400541 0.000000e+00 809.0
16 TraesCS2A01G211400 chr3A 81.818 374 38 8 563 933 28398685 28399031 1.050000e-73 287.0
17 TraesCS2A01G211400 chr2B 82.746 1107 99 31 1290 2333 37298035 37299112 0.000000e+00 902.0
18 TraesCS2A01G211400 chr2B 87.658 316 28 7 932 1243 37297729 37298037 7.930000e-95 357.0
19 TraesCS2A01G211400 chr2B 88.690 168 12 2 766 933 37297498 37297658 5.090000e-47 198.0
20 TraesCS2A01G211400 chr5B 89.679 717 54 10 930 1644 650991160 650990462 0.000000e+00 896.0
21 TraesCS2A01G211400 chr5B 89.135 451 35 8 1889 2333 650990066 650989624 1.220000e-152 549.0
22 TraesCS2A01G211400 chr5B 83.690 374 43 11 563 933 650991577 650991219 1.030000e-88 337.0
23 TraesCS2A01G211400 chr5B 81.877 309 38 8 2038 2333 610891235 610891538 6.440000e-61 244.0
24 TraesCS2A01G211400 chr5B 87.500 160 16 3 1713 1872 650990349 650990194 5.120000e-42 182.0
25 TraesCS2A01G211400 chr5B 76.136 264 50 10 563 815 610890342 610890603 2.430000e-25 126.0
26 TraesCS2A01G211400 chrUn 85.876 885 66 29 1484 2333 234878976 234879836 0.000000e+00 887.0
27 TraesCS2A01G211400 chrUn 85.876 885 66 29 1484 2333 234888939 234889799 0.000000e+00 887.0
28 TraesCS2A01G211400 chr4B 89.258 633 44 10 1713 2333 632399676 632400296 0.000000e+00 771.0
29 TraesCS2A01G211400 chr4B 90.323 465 40 3 1180 1644 632399097 632399556 2.560000e-169 604.0
30 TraesCS2A01G211400 chr4B 96.232 345 13 0 1 345 91734169 91733825 1.210000e-157 566.0
31 TraesCS2A01G211400 chr4B 90.541 74 7 0 380 453 91733828 91733755 5.310000e-17 99.0
32 TraesCS2A01G211400 chr6A 96.909 453 14 0 1 453 7087856 7087404 0.000000e+00 760.0
33 TraesCS2A01G211400 chr6D 95.364 453 21 0 1 453 391960842 391961294 0.000000e+00 721.0
34 TraesCS2A01G211400 chr6D 95.364 453 21 0 1 453 454626544 454626996 0.000000e+00 721.0
35 TraesCS2A01G211400 chr6D 86.364 374 34 5 930 1303 463979233 463979589 2.170000e-105 392.0
36 TraesCS2A01G211400 chr6D 81.404 285 40 8 654 933 463978896 463979172 1.090000e-53 220.0
37 TraesCS2A01G211400 chr2D 95.364 453 21 0 1 453 11387877 11387425 0.000000e+00 721.0
38 TraesCS2A01G211400 chr2D 97.196 107 3 0 454 560 11567052 11566946 5.120000e-42 182.0
39 TraesCS2A01G211400 chr7B 83.089 615 57 12 1739 2333 581406101 581406688 1.240000e-142 516.0
40 TraesCS2A01G211400 chr7B 85.294 374 43 7 564 933 31999967 31999602 2.190000e-100 375.0
41 TraesCS2A01G211400 chr7B 88.217 314 27 5 932 1242 581404993 581405299 1.320000e-97 366.0
42 TraesCS2A01G211400 chr7B 88.015 267 19 5 930 1191 31999540 31999282 1.050000e-78 303.0
43 TraesCS2A01G211400 chr7D 80.306 457 68 15 6 453 567699356 567698913 2.240000e-85 326.0
44 TraesCS2A01G211400 chr1A 85.659 258 34 3 563 818 335045089 335044833 3.820000e-68 268.0
45 TraesCS2A01G211400 chr1A 85.222 203 27 3 1387 1587 335043589 335043388 3.040000e-49 206.0
46 TraesCS2A01G211400 chr5A 94.340 53 2 1 403 454 242799190 242799138 1.920000e-11 80.5


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS2A01G211400 chr2A 195709937 195712269 2332 True 4309.000000 4309 100.000000 1 2333 1 chr2A.!!$R1 2332
1 TraesCS2A01G211400 chr2A 337889066 337889752 686 False 346.000000 377 87.048500 563 1191 2 chr2A.!!$F3 628
2 TraesCS2A01G211400 chr2A 337772058 337772744 686 False 335.000000 361 86.461500 563 1191 2 chr2A.!!$F2 628
3 TraesCS2A01G211400 chr4A 585556279 585558111 1832 False 1464.000000 2791 94.763000 608 2333 2 chr4A.!!$F4 1725
4 TraesCS2A01G211400 chr7A 318753596 318754996 1400 True 1618.000000 1618 87.830000 933 2333 1 chr7A.!!$R2 1400
5 TraesCS2A01G211400 chr7A 31086917 31088256 1339 True 1533.000000 1533 87.654000 993 2333 1 chr7A.!!$R1 1340
6 TraesCS2A01G211400 chr3A 28398685 28400541 1856 False 680.000000 944 87.649333 563 2333 3 chr3A.!!$F1 1770
7 TraesCS2A01G211400 chr2B 37297498 37299112 1614 False 485.666667 902 86.364667 766 2333 3 chr2B.!!$F1 1567
8 TraesCS2A01G211400 chr5B 650989624 650991577 1953 True 491.000000 896 87.501000 563 2333 4 chr5B.!!$R1 1770
9 TraesCS2A01G211400 chrUn 234878976 234879836 860 False 887.000000 887 85.876000 1484 2333 1 chrUn.!!$F1 849
10 TraesCS2A01G211400 chrUn 234888939 234889799 860 False 887.000000 887 85.876000 1484 2333 1 chrUn.!!$F2 849
11 TraesCS2A01G211400 chr4B 632399097 632400296 1199 False 687.500000 771 89.790500 1180 2333 2 chr4B.!!$F1 1153
12 TraesCS2A01G211400 chr6D 463978896 463979589 693 False 306.000000 392 83.884000 654 1303 2 chr6D.!!$F3 649
13 TraesCS2A01G211400 chr7B 581404993 581406688 1695 False 441.000000 516 85.653000 932 2333 2 chr7B.!!$F1 1401
14 TraesCS2A01G211400 chr7B 31999282 31999967 685 True 339.000000 375 86.654500 564 1191 2 chr7B.!!$R1 627
15 TraesCS2A01G211400 chr1A 335043388 335045089 1701 True 237.000000 268 85.440500 563 1587 2 chr1A.!!$R1 1024

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
536 537 0.179032 ACTGCGTGGTGTTGGATGAA 60.179 50.0 0.0 0.0 0.0 2.57 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1662 2995 2.359354 TGCACGTACCCATGGCAC 60.359 61.111 6.09 5.39 0.0 5.01 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
28 29 9.996554 ATGATTATTACAACAGGATATTGACGA 57.003 29.630 0.00 0.00 0.00 4.20
29 30 9.996554 TGATTATTACAACAGGATATTGACGAT 57.003 29.630 0.00 0.00 0.00 3.73
31 32 9.996554 ATTATTACAACAGGATATTGACGATCA 57.003 29.630 0.00 0.00 0.00 2.92
32 33 9.996554 TTATTACAACAGGATATTGACGATCAT 57.003 29.630 0.00 0.00 0.00 2.45
33 34 7.946655 TTACAACAGGATATTGACGATCATC 57.053 36.000 0.00 0.00 0.00 2.92
34 35 4.984785 ACAACAGGATATTGACGATCATCG 59.015 41.667 5.22 5.22 46.93 3.84
35 36 5.221244 ACAACAGGATATTGACGATCATCGA 60.221 40.000 15.60 0.00 43.74 3.59
36 37 4.799678 ACAGGATATTGACGATCATCGAC 58.200 43.478 15.60 8.54 43.74 4.20
37 38 4.520874 ACAGGATATTGACGATCATCGACT 59.479 41.667 15.60 0.00 43.74 4.18
38 39 4.855937 CAGGATATTGACGATCATCGACTG 59.144 45.833 15.60 4.99 43.74 3.51
39 40 4.762251 AGGATATTGACGATCATCGACTGA 59.238 41.667 15.60 1.29 43.74 3.41
40 41 4.854291 GGATATTGACGATCATCGACTGAC 59.146 45.833 15.60 0.44 43.74 3.51
41 42 5.335269 GGATATTGACGATCATCGACTGACT 60.335 44.000 15.60 0.00 43.74 3.41
42 43 2.832672 TGACGATCATCGACTGACTG 57.167 50.000 15.60 0.00 43.74 3.51
43 44 1.401905 TGACGATCATCGACTGACTGG 59.598 52.381 15.60 0.00 43.74 4.00
44 45 1.671328 GACGATCATCGACTGACTGGA 59.329 52.381 15.60 0.00 43.74 3.86
45 46 1.402259 ACGATCATCGACTGACTGGAC 59.598 52.381 15.60 0.00 43.74 4.02
46 47 1.401905 CGATCATCGACTGACTGGACA 59.598 52.381 0.00 0.00 43.74 4.02
47 48 2.792890 CGATCATCGACTGACTGGACAC 60.793 54.545 0.00 0.00 43.74 3.67
48 49 1.911057 TCATCGACTGACTGGACACT 58.089 50.000 0.00 0.00 0.00 3.55
49 50 1.541588 TCATCGACTGACTGGACACTG 59.458 52.381 0.00 0.00 0.00 3.66
50 51 1.270826 CATCGACTGACTGGACACTGT 59.729 52.381 0.00 0.00 0.00 3.55
51 52 1.399714 TCGACTGACTGGACACTGTT 58.600 50.000 0.00 0.00 0.00 3.16
52 53 2.578786 TCGACTGACTGGACACTGTTA 58.421 47.619 0.00 0.00 0.00 2.41
53 54 2.953648 TCGACTGACTGGACACTGTTAA 59.046 45.455 0.00 0.00 0.00 2.01
54 55 3.004419 TCGACTGACTGGACACTGTTAAG 59.996 47.826 0.00 0.00 0.00 1.85
55 56 3.243434 CGACTGACTGGACACTGTTAAGT 60.243 47.826 0.00 0.00 36.98 2.24
70 71 7.568199 ACTGTTAAGTGACATATTATTGGGC 57.432 36.000 0.00 0.00 34.48 5.36
71 72 7.346471 ACTGTTAAGTGACATATTATTGGGCT 58.654 34.615 0.00 0.00 34.48 5.19
72 73 7.834181 ACTGTTAAGTGACATATTATTGGGCTT 59.166 33.333 0.00 0.00 34.48 4.35
73 74 8.588290 TGTTAAGTGACATATTATTGGGCTTT 57.412 30.769 0.00 0.00 0.00 3.51
74 75 9.688091 TGTTAAGTGACATATTATTGGGCTTTA 57.312 29.630 0.00 0.00 0.00 1.85
77 78 7.219484 AGTGACATATTATTGGGCTTTATGC 57.781 36.000 0.00 0.00 41.94 3.14
78 79 6.777091 AGTGACATATTATTGGGCTTTATGCA 59.223 34.615 0.00 0.00 45.15 3.96
90 91 5.478407 GGGCTTTATGCACTTGTAATTTGT 58.522 37.500 0.00 0.00 43.01 2.83
91 92 5.348451 GGGCTTTATGCACTTGTAATTTGTG 59.652 40.000 0.00 0.00 43.01 3.33
92 93 6.155827 GGCTTTATGCACTTGTAATTTGTGA 58.844 36.000 0.00 0.00 45.15 3.58
93 94 6.308766 GGCTTTATGCACTTGTAATTTGTGAG 59.691 38.462 0.00 0.00 45.15 3.51
94 95 6.183360 GCTTTATGCACTTGTAATTTGTGAGC 60.183 38.462 0.00 0.00 42.31 4.26
95 96 3.266541 TGCACTTGTAATTTGTGAGCG 57.733 42.857 0.00 0.00 33.95 5.03
96 97 1.978782 GCACTTGTAATTTGTGAGCGC 59.021 47.619 0.00 0.00 33.95 5.92
97 98 2.350772 GCACTTGTAATTTGTGAGCGCT 60.351 45.455 11.27 11.27 33.95 5.92
98 99 3.482786 CACTTGTAATTTGTGAGCGCTC 58.517 45.455 30.42 30.42 33.95 5.03
99 100 2.157668 ACTTGTAATTTGTGAGCGCTCG 59.842 45.455 30.75 14.93 0.00 5.03
100 101 2.073117 TGTAATTTGTGAGCGCTCGA 57.927 45.000 30.75 18.21 0.00 4.04
101 102 1.724623 TGTAATTTGTGAGCGCTCGAC 59.275 47.619 30.75 26.94 0.00 4.20
102 103 1.993370 GTAATTTGTGAGCGCTCGACT 59.007 47.619 30.75 15.92 0.00 4.18
103 104 1.512926 AATTTGTGAGCGCTCGACTT 58.487 45.000 30.75 16.72 0.00 3.01
104 105 1.512926 ATTTGTGAGCGCTCGACTTT 58.487 45.000 30.75 13.86 0.00 2.66
105 106 2.143008 TTTGTGAGCGCTCGACTTTA 57.857 45.000 30.75 10.94 0.00 1.85
106 107 1.415374 TTGTGAGCGCTCGACTTTAC 58.585 50.000 30.75 22.09 0.00 2.01
107 108 0.312729 TGTGAGCGCTCGACTTTACA 59.687 50.000 30.75 24.29 0.00 2.41
108 109 1.269361 TGTGAGCGCTCGACTTTACAA 60.269 47.619 30.75 8.59 0.00 2.41
109 110 1.993370 GTGAGCGCTCGACTTTACAAT 59.007 47.619 30.75 0.00 0.00 2.71
110 111 2.028165 GTGAGCGCTCGACTTTACAATC 59.972 50.000 30.75 5.20 0.00 2.67
111 112 1.253034 GAGCGCTCGACTTTACAATCG 59.747 52.381 23.61 0.00 39.72 3.34
112 113 0.297820 GCGCTCGACTTTACAATCGG 59.702 55.000 0.00 0.00 38.86 4.18
113 114 1.625616 CGCTCGACTTTACAATCGGT 58.374 50.000 0.00 0.00 38.86 4.69
114 115 2.789208 CGCTCGACTTTACAATCGGTA 58.211 47.619 0.00 0.00 38.86 4.02
115 116 3.173599 CGCTCGACTTTACAATCGGTAA 58.826 45.455 0.00 0.00 40.15 2.85
116 117 3.239941 CGCTCGACTTTACAATCGGTAAG 59.760 47.826 0.00 0.00 42.63 2.34
117 118 4.418392 GCTCGACTTTACAATCGGTAAGA 58.582 43.478 0.00 0.00 42.63 2.10
118 119 5.041940 GCTCGACTTTACAATCGGTAAGAT 58.958 41.667 0.00 0.00 42.63 2.40
120 121 6.035758 GCTCGACTTTACAATCGGTAAGATTT 59.964 38.462 0.00 0.00 46.80 2.17
121 122 7.412672 GCTCGACTTTACAATCGGTAAGATTTT 60.413 37.037 0.00 0.00 46.80 1.82
122 123 8.984891 TCGACTTTACAATCGGTAAGATTTTA 57.015 30.769 0.00 0.00 46.80 1.52
123 124 9.590451 TCGACTTTACAATCGGTAAGATTTTAT 57.410 29.630 0.00 0.00 46.80 1.40
158 159 9.953565 TTAGTATTTTTGTATGTTCCAGCTAGT 57.046 29.630 0.00 0.00 0.00 2.57
159 160 8.863872 AGTATTTTTGTATGTTCCAGCTAGTT 57.136 30.769 0.00 0.00 0.00 2.24
160 161 9.297037 AGTATTTTTGTATGTTCCAGCTAGTTT 57.703 29.630 0.00 0.00 0.00 2.66
161 162 9.908152 GTATTTTTGTATGTTCCAGCTAGTTTT 57.092 29.630 0.00 0.00 0.00 2.43
162 163 8.816640 ATTTTTGTATGTTCCAGCTAGTTTTG 57.183 30.769 0.00 0.00 0.00 2.44
163 164 7.575414 TTTTGTATGTTCCAGCTAGTTTTGA 57.425 32.000 0.00 0.00 0.00 2.69
164 165 7.575414 TTTGTATGTTCCAGCTAGTTTTGAA 57.425 32.000 0.00 0.00 0.00 2.69
165 166 7.759489 TTGTATGTTCCAGCTAGTTTTGAAT 57.241 32.000 0.00 0.00 0.00 2.57
166 167 7.759489 TGTATGTTCCAGCTAGTTTTGAATT 57.241 32.000 0.00 0.00 0.00 2.17
167 168 8.856153 TGTATGTTCCAGCTAGTTTTGAATTA 57.144 30.769 0.00 0.00 0.00 1.40
168 169 8.726988 TGTATGTTCCAGCTAGTTTTGAATTAC 58.273 33.333 0.00 0.00 0.00 1.89
169 170 6.569179 TGTTCCAGCTAGTTTTGAATTACC 57.431 37.500 0.00 0.00 0.00 2.85
170 171 6.065374 TGTTCCAGCTAGTTTTGAATTACCA 58.935 36.000 0.00 0.00 0.00 3.25
171 172 6.547880 TGTTCCAGCTAGTTTTGAATTACCAA 59.452 34.615 0.00 0.00 0.00 3.67
172 173 7.232534 TGTTCCAGCTAGTTTTGAATTACCAAT 59.767 33.333 0.00 0.00 0.00 3.16
173 174 7.775053 TCCAGCTAGTTTTGAATTACCAATT 57.225 32.000 0.00 0.00 0.00 2.32
174 175 8.871629 TCCAGCTAGTTTTGAATTACCAATTA 57.128 30.769 0.00 0.00 0.00 1.40
175 176 9.474313 TCCAGCTAGTTTTGAATTACCAATTAT 57.526 29.630 0.00 0.00 0.00 1.28
199 200 8.767478 ATTTCTTTAAATTTCAGCACCTCATG 57.233 30.769 0.00 0.00 30.98 3.07
200 201 6.899393 TCTTTAAATTTCAGCACCTCATGT 57.101 33.333 0.00 0.00 0.00 3.21
201 202 6.913170 TCTTTAAATTTCAGCACCTCATGTC 58.087 36.000 0.00 0.00 0.00 3.06
202 203 6.489700 TCTTTAAATTTCAGCACCTCATGTCA 59.510 34.615 0.00 0.00 0.00 3.58
203 204 4.510038 AAATTTCAGCACCTCATGTCAC 57.490 40.909 0.00 0.00 0.00 3.67
204 205 1.896220 TTTCAGCACCTCATGTCACC 58.104 50.000 0.00 0.00 0.00 4.02
205 206 1.059098 TTCAGCACCTCATGTCACCT 58.941 50.000 0.00 0.00 0.00 4.00
206 207 1.937191 TCAGCACCTCATGTCACCTA 58.063 50.000 0.00 0.00 0.00 3.08
207 208 1.827344 TCAGCACCTCATGTCACCTAG 59.173 52.381 0.00 0.00 0.00 3.02
208 209 1.552337 CAGCACCTCATGTCACCTAGT 59.448 52.381 0.00 0.00 0.00 2.57
209 210 2.760650 CAGCACCTCATGTCACCTAGTA 59.239 50.000 0.00 0.00 0.00 1.82
210 211 3.195610 CAGCACCTCATGTCACCTAGTAA 59.804 47.826 0.00 0.00 0.00 2.24
211 212 3.838317 AGCACCTCATGTCACCTAGTAAA 59.162 43.478 0.00 0.00 0.00 2.01
212 213 4.286032 AGCACCTCATGTCACCTAGTAAAA 59.714 41.667 0.00 0.00 0.00 1.52
213 214 4.631813 GCACCTCATGTCACCTAGTAAAAG 59.368 45.833 0.00 0.00 0.00 2.27
214 215 5.178797 CACCTCATGTCACCTAGTAAAAGG 58.821 45.833 0.00 0.00 42.82 3.11
215 216 4.192317 CCTCATGTCACCTAGTAAAAGGC 58.808 47.826 0.00 0.00 40.62 4.35
216 217 4.323485 CCTCATGTCACCTAGTAAAAGGCA 60.323 45.833 0.00 0.00 40.62 4.75
217 218 5.431765 CTCATGTCACCTAGTAAAAGGCAT 58.568 41.667 0.00 0.00 40.62 4.40
218 219 5.815581 TCATGTCACCTAGTAAAAGGCATT 58.184 37.500 0.00 0.00 40.62 3.56
219 220 5.880332 TCATGTCACCTAGTAAAAGGCATTC 59.120 40.000 0.00 0.00 40.62 2.67
220 221 5.235850 TGTCACCTAGTAAAAGGCATTCA 57.764 39.130 0.00 0.00 40.62 2.57
221 222 5.815581 TGTCACCTAGTAAAAGGCATTCAT 58.184 37.500 0.00 0.00 40.62 2.57
222 223 5.880332 TGTCACCTAGTAAAAGGCATTCATC 59.120 40.000 0.00 0.00 40.62 2.92
223 224 5.297029 GTCACCTAGTAAAAGGCATTCATCC 59.703 44.000 0.00 0.00 40.62 3.51
224 225 5.045213 TCACCTAGTAAAAGGCATTCATCCA 60.045 40.000 0.00 0.00 40.62 3.41
225 226 5.297776 CACCTAGTAAAAGGCATTCATCCAG 59.702 44.000 0.00 0.00 40.62 3.86
226 227 5.191722 ACCTAGTAAAAGGCATTCATCCAGA 59.808 40.000 0.00 0.00 40.62 3.86
227 228 6.122277 CCTAGTAAAAGGCATTCATCCAGAA 58.878 40.000 0.00 0.00 41.28 3.02
228 229 6.603201 CCTAGTAAAAGGCATTCATCCAGAAA 59.397 38.462 0.00 0.00 40.22 2.52
229 230 6.272822 AGTAAAAGGCATTCATCCAGAAAC 57.727 37.500 0.00 0.00 40.22 2.78
230 231 6.012745 AGTAAAAGGCATTCATCCAGAAACT 58.987 36.000 0.00 0.00 40.22 2.66
231 232 7.175104 AGTAAAAGGCATTCATCCAGAAACTA 58.825 34.615 0.00 0.00 40.22 2.24
232 233 5.904362 AAAGGCATTCATCCAGAAACTAC 57.096 39.130 0.00 0.00 40.22 2.73
233 234 4.574674 AGGCATTCATCCAGAAACTACA 57.425 40.909 0.00 0.00 40.22 2.74
234 235 4.922206 AGGCATTCATCCAGAAACTACAA 58.078 39.130 0.00 0.00 40.22 2.41
235 236 5.513233 AGGCATTCATCCAGAAACTACAAT 58.487 37.500 0.00 0.00 40.22 2.71
236 237 5.954150 AGGCATTCATCCAGAAACTACAATT 59.046 36.000 0.00 0.00 40.22 2.32
237 238 7.118723 AGGCATTCATCCAGAAACTACAATTA 58.881 34.615 0.00 0.00 40.22 1.40
238 239 7.067494 AGGCATTCATCCAGAAACTACAATTAC 59.933 37.037 0.00 0.00 40.22 1.89
239 240 7.067494 GGCATTCATCCAGAAACTACAATTACT 59.933 37.037 0.00 0.00 40.22 2.24
240 241 9.109393 GCATTCATCCAGAAACTACAATTACTA 57.891 33.333 0.00 0.00 40.22 1.82
247 248 9.475620 TCCAGAAACTACAATTACTAGATGAGA 57.524 33.333 0.00 0.00 0.00 3.27
263 264 9.602568 ACTAGATGAGATTGATAATGATGCATC 57.397 33.333 20.14 20.14 0.00 3.91
264 265 7.541122 AGATGAGATTGATAATGATGCATCG 57.459 36.000 21.34 0.00 35.89 3.84
265 266 5.541098 TGAGATTGATAATGATGCATCGC 57.459 39.130 21.34 8.88 0.00 4.58
266 267 4.998672 TGAGATTGATAATGATGCATCGCA 59.001 37.500 21.34 6.37 44.86 5.10
267 268 5.121768 TGAGATTGATAATGATGCATCGCAG 59.878 40.000 21.34 0.00 43.65 5.18
268 269 5.243207 AGATTGATAATGATGCATCGCAGA 58.757 37.500 21.34 4.51 43.65 4.26
269 270 5.704053 AGATTGATAATGATGCATCGCAGAA 59.296 36.000 21.34 9.62 43.65 3.02
270 271 5.952526 TTGATAATGATGCATCGCAGAAT 57.047 34.783 21.34 10.27 43.65 2.40
271 272 5.291293 TGATAATGATGCATCGCAGAATG 57.709 39.130 21.34 0.00 43.65 2.67
272 273 4.758165 TGATAATGATGCATCGCAGAATGT 59.242 37.500 21.34 2.64 43.65 2.71
273 274 5.239963 TGATAATGATGCATCGCAGAATGTT 59.760 36.000 21.34 8.41 43.65 2.71
274 275 2.836479 TGATGCATCGCAGAATGTTG 57.164 45.000 21.34 0.00 43.65 3.33
275 276 2.086094 TGATGCATCGCAGAATGTTGT 58.914 42.857 21.34 0.00 43.65 3.32
276 277 3.269178 TGATGCATCGCAGAATGTTGTA 58.731 40.909 21.34 0.00 43.65 2.41
277 278 3.688673 TGATGCATCGCAGAATGTTGTAA 59.311 39.130 21.34 0.00 43.65 2.41
278 279 3.745332 TGCATCGCAGAATGTTGTAAG 57.255 42.857 0.00 0.00 43.58 2.34
279 280 3.333804 TGCATCGCAGAATGTTGTAAGA 58.666 40.909 0.00 0.00 43.58 2.10
280 281 3.750652 TGCATCGCAGAATGTTGTAAGAA 59.249 39.130 0.00 0.00 43.58 2.52
281 282 4.215185 TGCATCGCAGAATGTTGTAAGAAA 59.785 37.500 0.00 0.00 43.58 2.52
282 283 5.106197 TGCATCGCAGAATGTTGTAAGAAAT 60.106 36.000 0.00 0.00 43.58 2.17
283 284 5.801947 GCATCGCAGAATGTTGTAAGAAATT 59.198 36.000 0.00 0.00 43.58 1.82
284 285 6.308766 GCATCGCAGAATGTTGTAAGAAATTT 59.691 34.615 0.00 0.00 43.58 1.82
285 286 7.461938 GCATCGCAGAATGTTGTAAGAAATTTC 60.462 37.037 10.33 10.33 43.58 2.17
286 287 7.202016 TCGCAGAATGTTGTAAGAAATTTCT 57.798 32.000 15.11 15.11 39.31 2.52
287 288 8.317891 TCGCAGAATGTTGTAAGAAATTTCTA 57.682 30.769 20.76 4.88 39.31 2.10
288 289 8.779303 TCGCAGAATGTTGTAAGAAATTTCTAA 58.221 29.630 20.76 9.24 39.31 2.10
289 290 9.055248 CGCAGAATGTTGTAAGAAATTTCTAAG 57.945 33.333 20.76 1.33 39.31 2.18
295 296 9.846248 ATGTTGTAAGAAATTTCTAAGATGTGC 57.154 29.630 20.76 8.52 36.28 4.57
296 297 8.845227 TGTTGTAAGAAATTTCTAAGATGTGCA 58.155 29.630 20.76 10.91 36.28 4.57
297 298 9.846248 GTTGTAAGAAATTTCTAAGATGTGCAT 57.154 29.630 20.76 4.24 36.28 3.96
320 321 9.979270 GCATATGTAATTTGATATGAGTACTGC 57.021 33.333 0.00 0.00 35.40 4.40
324 325 9.632638 ATGTAATTTGATATGAGTACTGCCTTT 57.367 29.630 0.00 0.00 0.00 3.11
325 326 9.109393 TGTAATTTGATATGAGTACTGCCTTTC 57.891 33.333 0.00 0.00 0.00 2.62
326 327 9.109393 GTAATTTGATATGAGTACTGCCTTTCA 57.891 33.333 0.00 0.00 0.00 2.69
335 336 3.786809 CTGCCTTTCAGTGCACATG 57.213 52.632 21.04 14.18 38.02 3.21
336 337 1.241165 CTGCCTTTCAGTGCACATGA 58.759 50.000 21.04 16.27 38.02 3.07
337 338 1.610038 CTGCCTTTCAGTGCACATGAA 59.390 47.619 21.04 20.80 38.02 2.57
338 339 2.030371 TGCCTTTCAGTGCACATGAAA 58.970 42.857 27.54 27.54 42.73 2.69
339 340 2.629137 TGCCTTTCAGTGCACATGAAAT 59.371 40.909 28.58 6.57 43.63 2.17
340 341 3.825585 TGCCTTTCAGTGCACATGAAATA 59.174 39.130 28.58 20.44 43.63 1.40
341 342 4.280425 TGCCTTTCAGTGCACATGAAATAA 59.720 37.500 28.58 19.94 43.63 1.40
342 343 5.047164 TGCCTTTCAGTGCACATGAAATAAT 60.047 36.000 28.58 4.68 43.63 1.28
343 344 5.290158 GCCTTTCAGTGCACATGAAATAATG 59.710 40.000 28.58 21.32 43.63 1.90
344 345 6.392354 CCTTTCAGTGCACATGAAATAATGT 58.608 36.000 28.58 3.61 43.63 2.71
345 346 6.869913 CCTTTCAGTGCACATGAAATAATGTT 59.130 34.615 28.58 3.43 43.63 2.71
346 347 7.385752 CCTTTCAGTGCACATGAAATAATGTTT 59.614 33.333 28.58 3.06 43.63 2.83
347 348 7.640616 TTCAGTGCACATGAAATAATGTTTG 57.359 32.000 21.04 3.01 38.75 2.93
348 349 6.979465 TCAGTGCACATGAAATAATGTTTGA 58.021 32.000 21.04 5.58 38.75 2.69
349 350 7.604549 TCAGTGCACATGAAATAATGTTTGAT 58.395 30.769 21.04 0.00 38.75 2.57
350 351 8.738106 TCAGTGCACATGAAATAATGTTTGATA 58.262 29.630 21.04 0.00 38.75 2.15
351 352 8.800972 CAGTGCACATGAAATAATGTTTGATAC 58.199 33.333 21.04 0.00 38.75 2.24
352 353 8.522003 AGTGCACATGAAATAATGTTTGATACA 58.478 29.630 21.04 0.00 38.75 2.29
354 355 9.518906 TGCACATGAAATAATGTTTGATACATC 57.481 29.630 0.00 0.00 46.75 3.06
355 356 9.740239 GCACATGAAATAATGTTTGATACATCT 57.260 29.630 0.00 0.00 46.75 2.90
404 405 8.935614 ATGTCCCTATTAATACTAAAAAGCCC 57.064 34.615 0.00 0.00 0.00 5.19
405 406 7.292319 TGTCCCTATTAATACTAAAAAGCCCC 58.708 38.462 0.00 0.00 0.00 5.80
406 407 6.429078 GTCCCTATTAATACTAAAAAGCCCCG 59.571 42.308 0.00 0.00 0.00 5.73
407 408 5.708697 CCCTATTAATACTAAAAAGCCCCGG 59.291 44.000 0.00 0.00 0.00 5.73
408 409 5.708697 CCTATTAATACTAAAAAGCCCCGGG 59.291 44.000 15.80 15.80 0.00 5.73
409 410 4.589647 TTAATACTAAAAAGCCCCGGGT 57.410 40.909 21.85 1.06 0.00 5.28
410 411 3.461378 AATACTAAAAAGCCCCGGGTT 57.539 42.857 21.85 9.34 37.44 4.11
411 412 2.495155 TACTAAAAAGCCCCGGGTTC 57.505 50.000 21.85 11.10 34.49 3.62
412 413 0.775542 ACTAAAAAGCCCCGGGTTCT 59.224 50.000 21.85 13.51 34.49 3.01
413 414 1.987368 ACTAAAAAGCCCCGGGTTCTA 59.013 47.619 21.85 0.00 34.49 2.10
414 415 2.026542 ACTAAAAAGCCCCGGGTTCTAG 60.027 50.000 21.85 10.36 34.49 2.43
415 416 1.069775 AAAAAGCCCCGGGTTCTAGA 58.930 50.000 21.85 0.00 34.49 2.43
416 417 1.296002 AAAAGCCCCGGGTTCTAGAT 58.704 50.000 21.85 0.00 34.49 1.98
417 418 1.296002 AAAGCCCCGGGTTCTAGATT 58.704 50.000 21.85 5.42 34.49 2.40
418 419 0.837940 AAGCCCCGGGTTCTAGATTC 59.162 55.000 21.85 0.00 0.00 2.52
419 420 1.069258 GCCCCGGGTTCTAGATTCG 59.931 63.158 21.85 0.00 0.00 3.34
420 421 1.069258 CCCCGGGTTCTAGATTCGC 59.931 63.158 21.85 0.00 0.00 4.70
421 422 1.069258 CCCGGGTTCTAGATTCGCC 59.931 63.158 14.18 0.00 0.00 5.54
422 423 1.069258 CCGGGTTCTAGATTCGCCC 59.931 63.158 0.00 10.47 36.08 6.13
423 424 1.069258 CGGGTTCTAGATTCGCCCC 59.931 63.158 13.32 8.45 36.04 5.80
424 425 1.069258 GGGTTCTAGATTCGCCCCG 59.931 63.158 9.72 0.00 33.40 5.73
425 426 1.069258 GGTTCTAGATTCGCCCCGG 59.931 63.158 0.00 0.00 0.00 5.73
426 427 1.069258 GTTCTAGATTCGCCCCGGG 59.931 63.158 15.80 15.80 0.00 5.73
427 428 2.803817 TTCTAGATTCGCCCCGGGC 61.804 63.158 19.64 19.64 46.75 6.13
441 442 2.361230 GGGCCCCCGAAAACTCAG 60.361 66.667 12.23 0.00 0.00 3.35
442 443 2.361230 GGCCCCCGAAAACTCAGG 60.361 66.667 0.00 0.00 0.00 3.86
443 444 2.754375 GCCCCCGAAAACTCAGGA 59.246 61.111 0.00 0.00 0.00 3.86
444 445 1.674651 GCCCCCGAAAACTCAGGAC 60.675 63.158 0.00 0.00 0.00 3.85
445 446 1.002502 CCCCCGAAAACTCAGGACC 60.003 63.158 0.00 0.00 0.00 4.46
446 447 1.375523 CCCCGAAAACTCAGGACCG 60.376 63.158 0.00 0.00 0.00 4.79
447 448 1.375523 CCCGAAAACTCAGGACCGG 60.376 63.158 0.00 0.00 36.98 5.28
448 449 2.033194 CCGAAAACTCAGGACCGGC 61.033 63.158 0.00 0.00 0.00 6.13
449 450 2.033194 CGAAAACTCAGGACCGGCC 61.033 63.158 0.00 3.58 0.00 6.13
450 451 1.674651 GAAAACTCAGGACCGGCCC 60.675 63.158 0.00 0.00 37.37 5.80
451 452 2.125766 GAAAACTCAGGACCGGCCCT 62.126 60.000 2.07 2.07 37.37 5.19
476 477 4.221422 GGCGTCGGAGCAGCCATA 62.221 66.667 12.45 0.00 46.01 2.74
477 478 2.202878 GCGTCGGAGCAGCCATAA 60.203 61.111 0.00 0.00 35.94 1.90
478 479 2.526120 GCGTCGGAGCAGCCATAAC 61.526 63.158 0.00 0.00 35.94 1.89
479 480 1.153647 CGTCGGAGCAGCCATAACA 60.154 57.895 0.00 0.00 35.94 2.41
480 481 1.148157 CGTCGGAGCAGCCATAACAG 61.148 60.000 0.00 0.00 35.94 3.16
481 482 0.811616 GTCGGAGCAGCCATAACAGG 60.812 60.000 0.00 0.00 35.94 4.00
482 483 0.975556 TCGGAGCAGCCATAACAGGA 60.976 55.000 0.00 0.00 35.94 3.86
483 484 0.531532 CGGAGCAGCCATAACAGGAG 60.532 60.000 0.00 0.00 35.94 3.69
484 485 0.833287 GGAGCAGCCATAACAGGAGA 59.167 55.000 0.00 0.00 36.34 3.71
485 486 1.419387 GGAGCAGCCATAACAGGAGAT 59.581 52.381 0.00 0.00 36.34 2.75
486 487 2.492012 GAGCAGCCATAACAGGAGATG 58.508 52.381 0.00 0.00 0.00 2.90
487 488 1.142465 AGCAGCCATAACAGGAGATGG 59.858 52.381 0.00 0.00 44.73 3.51
488 489 1.133976 GCAGCCATAACAGGAGATGGT 60.134 52.381 3.04 0.00 43.94 3.55
489 490 2.569059 CAGCCATAACAGGAGATGGTG 58.431 52.381 3.04 0.00 43.94 4.17
490 491 1.492176 AGCCATAACAGGAGATGGTGG 59.508 52.381 3.04 0.00 43.94 4.61
491 492 1.972872 CCATAACAGGAGATGGTGGC 58.027 55.000 0.00 0.00 38.26 5.01
492 493 1.212688 CCATAACAGGAGATGGTGGCA 59.787 52.381 0.00 0.00 38.26 4.92
493 494 2.357050 CCATAACAGGAGATGGTGGCAA 60.357 50.000 0.00 0.00 38.26 4.52
494 495 3.559069 CATAACAGGAGATGGTGGCAAT 58.441 45.455 0.00 0.00 0.00 3.56
495 496 1.843368 AACAGGAGATGGTGGCAATG 58.157 50.000 0.00 0.00 0.00 2.82
496 497 0.682209 ACAGGAGATGGTGGCAATGC 60.682 55.000 0.00 0.00 0.00 3.56
497 498 1.452651 AGGAGATGGTGGCAATGCG 60.453 57.895 0.00 0.00 0.00 4.73
498 499 1.750399 GGAGATGGTGGCAATGCGT 60.750 57.895 0.00 0.00 0.00 5.24
499 500 1.430632 GAGATGGTGGCAATGCGTG 59.569 57.895 0.00 0.00 0.00 5.34
514 515 3.838795 GTGCGACGCCACGATGTC 61.839 66.667 18.69 0.00 35.09 3.06
517 518 4.470170 CGACGCCACGATGTCCGA 62.470 66.667 0.00 0.00 41.76 4.55
518 519 2.879462 GACGCCACGATGTCCGAC 60.879 66.667 0.00 0.00 41.76 4.79
519 520 3.338126 GACGCCACGATGTCCGACT 62.338 63.158 0.00 0.00 41.76 4.18
520 521 2.880879 CGCCACGATGTCCGACTG 60.881 66.667 0.00 0.00 41.76 3.51
521 522 3.188786 GCCACGATGTCCGACTGC 61.189 66.667 0.00 0.00 41.76 4.40
522 523 2.880879 CCACGATGTCCGACTGCG 60.881 66.667 10.64 10.64 41.76 5.18
523 524 2.126463 CACGATGTCCGACTGCGT 60.126 61.111 11.68 11.68 41.76 5.24
524 525 2.126463 ACGATGTCCGACTGCGTG 60.126 61.111 15.22 0.00 41.76 5.34
525 526 2.880879 CGATGTCCGACTGCGTGG 60.881 66.667 0.00 0.00 41.76 4.94
526 527 2.261671 GATGTCCGACTGCGTGGT 59.738 61.111 0.00 0.00 35.23 4.16
527 528 2.048222 ATGTCCGACTGCGTGGTG 60.048 61.111 0.00 0.00 35.23 4.17
528 529 2.765250 GATGTCCGACTGCGTGGTGT 62.765 60.000 0.00 0.00 35.23 4.16
529 530 2.279918 GTCCGACTGCGTGGTGTT 60.280 61.111 0.00 0.00 35.23 3.32
530 531 2.279851 TCCGACTGCGTGGTGTTG 60.280 61.111 0.00 0.00 35.23 3.33
531 532 3.345808 CCGACTGCGTGGTGTTGG 61.346 66.667 0.00 0.00 35.23 3.77
532 533 2.279851 CGACTGCGTGGTGTTGGA 60.280 61.111 0.00 0.00 0.00 3.53
533 534 1.667830 CGACTGCGTGGTGTTGGAT 60.668 57.895 0.00 0.00 0.00 3.41
534 535 1.868997 GACTGCGTGGTGTTGGATG 59.131 57.895 0.00 0.00 0.00 3.51
535 536 0.602638 GACTGCGTGGTGTTGGATGA 60.603 55.000 0.00 0.00 0.00 2.92
536 537 0.179032 ACTGCGTGGTGTTGGATGAA 60.179 50.000 0.00 0.00 0.00 2.57
537 538 0.238289 CTGCGTGGTGTTGGATGAAC 59.762 55.000 0.00 0.00 34.84 3.18
538 539 1.169661 TGCGTGGTGTTGGATGAACC 61.170 55.000 0.00 0.00 39.54 3.62
547 548 3.374318 TGGATGAACCAGACGAGGA 57.626 52.632 0.00 0.00 44.64 3.71
548 549 0.895530 TGGATGAACCAGACGAGGAC 59.104 55.000 0.00 0.00 44.64 3.85
549 550 0.179134 GGATGAACCAGACGAGGACG 60.179 60.000 0.00 0.00 41.05 4.79
550 551 0.179134 GATGAACCAGACGAGGACGG 60.179 60.000 0.00 0.00 44.46 4.79
551 552 0.611062 ATGAACCAGACGAGGACGGA 60.611 55.000 0.00 0.00 44.46 4.69
552 553 1.212229 GAACCAGACGAGGACGGAC 59.788 63.158 0.00 0.00 44.46 4.79
553 554 2.210341 GAACCAGACGAGGACGGACC 62.210 65.000 0.00 0.00 44.46 4.46
554 555 3.812019 CCAGACGAGGACGGACCG 61.812 72.222 13.61 13.61 44.74 4.79
555 556 3.812019 CAGACGAGGACGGACCGG 61.812 72.222 20.00 0.00 44.74 5.28
585 586 1.746517 ACGGAAGTGCTTCGTTCCT 59.253 52.632 5.93 0.00 46.97 3.36
589 590 1.535896 GGAAGTGCTTCGTTCCTTTCC 59.464 52.381 5.93 0.00 39.42 3.13
692 821 3.234386 GAGCCTGTAACATTTTTCACGC 58.766 45.455 0.00 0.00 0.00 5.34
711 840 2.096811 CGCGTGTTTTCTTAAGCGGTTA 60.097 45.455 2.26 2.26 43.29 2.85
950 1708 0.256177 GCTTTGGCTAGGCTAGGGTT 59.744 55.000 22.40 0.00 35.22 4.11
1109 2053 4.308458 CGGTTGGAGGCGACCACA 62.308 66.667 6.00 0.00 39.85 4.17
1655 2988 8.696043 TTTATGCAAAATATGGCTACTCTGAT 57.304 30.769 0.00 0.00 0.00 2.90
1662 2995 1.393603 TGGCTACTCTGATCACTCCG 58.606 55.000 0.00 0.00 0.00 4.63
1798 3180 3.317711 TGCTCTGCCTGAATTTCGAAAAA 59.682 39.130 15.66 3.00 0.00 1.94
1799 3181 4.022068 TGCTCTGCCTGAATTTCGAAAAAT 60.022 37.500 15.66 6.98 36.64 1.82
1930 3424 6.316140 GGATGCAAGAAAATAAATTTGGGTCC 59.684 38.462 0.00 0.00 0.00 4.46
2303 3811 5.239351 AGCTTATGCATGAGATAGAGCTTG 58.761 41.667 21.75 0.00 42.74 4.01
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
2 3 9.996554 TCGTCAATATCCTGTTGTAATAATCAT 57.003 29.630 0.00 0.00 0.00 2.45
6 7 9.996554 ATGATCGTCAATATCCTGTTGTAATAA 57.003 29.630 0.00 0.00 0.00 1.40
7 8 9.639601 GATGATCGTCAATATCCTGTTGTAATA 57.360 33.333 10.16 0.00 0.00 0.98
8 9 7.329471 CGATGATCGTCAATATCCTGTTGTAAT 59.671 37.037 15.14 0.00 34.72 1.89
9 10 6.640907 CGATGATCGTCAATATCCTGTTGTAA 59.359 38.462 15.14 0.00 34.72 2.41
10 11 6.016610 TCGATGATCGTCAATATCCTGTTGTA 60.017 38.462 15.06 0.00 41.35 2.41
11 12 4.984785 CGATGATCGTCAATATCCTGTTGT 59.015 41.667 15.14 0.00 34.72 3.32
12 13 5.117745 GTCGATGATCGTCAATATCCTGTTG 59.882 44.000 15.06 0.00 41.35 3.33
13 14 5.010112 AGTCGATGATCGTCAATATCCTGTT 59.990 40.000 15.06 0.00 41.35 3.16
14 15 4.520874 AGTCGATGATCGTCAATATCCTGT 59.479 41.667 15.06 0.00 41.35 4.00
15 16 4.855937 CAGTCGATGATCGTCAATATCCTG 59.144 45.833 15.06 6.85 41.35 3.86
16 17 4.762251 TCAGTCGATGATCGTCAATATCCT 59.238 41.667 15.06 0.00 41.35 3.24
17 18 4.854291 GTCAGTCGATGATCGTCAATATCC 59.146 45.833 15.06 0.00 40.92 2.59
18 19 5.567154 CAGTCAGTCGATGATCGTCAATATC 59.433 44.000 15.06 0.00 40.92 1.63
19 20 5.456265 CAGTCAGTCGATGATCGTCAATAT 58.544 41.667 15.06 0.00 40.92 1.28
20 21 4.261197 CCAGTCAGTCGATGATCGTCAATA 60.261 45.833 15.06 0.00 40.92 1.90
21 22 3.489908 CCAGTCAGTCGATGATCGTCAAT 60.490 47.826 15.06 0.00 40.92 2.57
22 23 2.159379 CCAGTCAGTCGATGATCGTCAA 60.159 50.000 15.06 0.00 40.92 3.18
23 24 1.401905 CCAGTCAGTCGATGATCGTCA 59.598 52.381 15.06 0.00 40.92 4.35
24 25 1.671328 TCCAGTCAGTCGATGATCGTC 59.329 52.381 15.06 9.42 40.92 4.20
25 26 1.402259 GTCCAGTCAGTCGATGATCGT 59.598 52.381 15.06 0.00 40.92 3.73
26 27 1.401905 TGTCCAGTCAGTCGATGATCG 59.598 52.381 8.83 8.83 40.92 3.69
27 28 2.425312 AGTGTCCAGTCAGTCGATGATC 59.575 50.000 0.00 0.00 40.92 2.92
28 29 2.165234 CAGTGTCCAGTCAGTCGATGAT 59.835 50.000 0.00 0.00 40.92 2.45
29 30 1.541588 CAGTGTCCAGTCAGTCGATGA 59.458 52.381 0.00 0.00 34.79 2.92
30 31 1.270826 ACAGTGTCCAGTCAGTCGATG 59.729 52.381 0.00 0.00 0.00 3.84
31 32 1.621992 ACAGTGTCCAGTCAGTCGAT 58.378 50.000 0.00 0.00 0.00 3.59
32 33 1.399714 AACAGTGTCCAGTCAGTCGA 58.600 50.000 0.00 0.00 0.00 4.20
33 34 3.243434 ACTTAACAGTGTCCAGTCAGTCG 60.243 47.826 0.00 0.00 0.00 4.18
34 35 4.051922 CACTTAACAGTGTCCAGTCAGTC 58.948 47.826 0.00 0.00 44.96 3.51
35 36 4.060038 CACTTAACAGTGTCCAGTCAGT 57.940 45.455 0.00 0.00 44.96 3.41
46 47 7.346471 AGCCCAATAATATGTCACTTAACAGT 58.654 34.615 0.00 0.00 31.50 3.55
47 48 7.807977 AGCCCAATAATATGTCACTTAACAG 57.192 36.000 0.00 0.00 31.50 3.16
48 49 8.588290 AAAGCCCAATAATATGTCACTTAACA 57.412 30.769 0.00 0.00 0.00 2.41
51 52 8.792633 GCATAAAGCCCAATAATATGTCACTTA 58.207 33.333 0.00 0.00 37.23 2.24
52 53 7.287466 TGCATAAAGCCCAATAATATGTCACTT 59.713 33.333 0.00 0.00 44.83 3.16
53 54 6.777091 TGCATAAAGCCCAATAATATGTCACT 59.223 34.615 0.00 0.00 44.83 3.41
54 55 6.863126 GTGCATAAAGCCCAATAATATGTCAC 59.137 38.462 0.00 0.00 44.83 3.67
55 56 6.777091 AGTGCATAAAGCCCAATAATATGTCA 59.223 34.615 0.00 0.00 44.83 3.58
56 57 7.219484 AGTGCATAAAGCCCAATAATATGTC 57.781 36.000 0.00 0.00 44.83 3.06
57 58 7.069826 ACAAGTGCATAAAGCCCAATAATATGT 59.930 33.333 0.00 0.00 44.83 2.29
58 59 7.436118 ACAAGTGCATAAAGCCCAATAATATG 58.564 34.615 0.00 0.00 44.83 1.78
59 60 7.601705 ACAAGTGCATAAAGCCCAATAATAT 57.398 32.000 0.00 0.00 44.83 1.28
60 61 8.526667 TTACAAGTGCATAAAGCCCAATAATA 57.473 30.769 0.00 0.00 44.83 0.98
61 62 5.937975 ACAAGTGCATAAAGCCCAATAAT 57.062 34.783 0.00 0.00 44.83 1.28
62 63 6.842437 TTACAAGTGCATAAAGCCCAATAA 57.158 33.333 0.00 0.00 44.83 1.40
63 64 7.416964 AATTACAAGTGCATAAAGCCCAATA 57.583 32.000 0.00 0.00 44.83 1.90
64 65 5.937975 ATTACAAGTGCATAAAGCCCAAT 57.062 34.783 0.00 0.00 44.83 3.16
65 66 5.736951 AATTACAAGTGCATAAAGCCCAA 57.263 34.783 0.00 0.00 44.83 4.12
66 67 5.011533 ACAAATTACAAGTGCATAAAGCCCA 59.988 36.000 0.00 0.00 44.83 5.36
67 68 5.348451 CACAAATTACAAGTGCATAAAGCCC 59.652 40.000 0.00 0.00 44.83 5.19
68 69 6.155827 TCACAAATTACAAGTGCATAAAGCC 58.844 36.000 0.00 0.00 44.83 4.35
69 70 6.183360 GCTCACAAATTACAAGTGCATAAAGC 60.183 38.462 0.00 0.00 45.96 3.51
70 71 6.032775 CGCTCACAAATTACAAGTGCATAAAG 59.967 38.462 0.00 0.00 33.44 1.85
71 72 5.855925 CGCTCACAAATTACAAGTGCATAAA 59.144 36.000 0.00 0.00 33.44 1.40
72 73 5.389778 CGCTCACAAATTACAAGTGCATAA 58.610 37.500 0.00 0.00 33.44 1.90
73 74 4.671508 GCGCTCACAAATTACAAGTGCATA 60.672 41.667 0.00 0.00 41.77 3.14
74 75 3.825308 CGCTCACAAATTACAAGTGCAT 58.175 40.909 0.00 0.00 33.44 3.96
75 76 2.604373 GCGCTCACAAATTACAAGTGCA 60.604 45.455 0.00 0.00 41.77 4.57
76 77 1.978782 GCGCTCACAAATTACAAGTGC 59.021 47.619 0.00 0.00 36.46 4.40
77 78 3.482786 GAGCGCTCACAAATTACAAGTG 58.517 45.455 31.91 0.00 34.67 3.16
78 79 2.157668 CGAGCGCTCACAAATTACAAGT 59.842 45.455 34.69 0.00 0.00 3.16
79 80 2.411748 TCGAGCGCTCACAAATTACAAG 59.588 45.455 34.69 15.22 0.00 3.16
80 81 2.156891 GTCGAGCGCTCACAAATTACAA 59.843 45.455 34.69 5.71 0.00 2.41
81 82 1.724623 GTCGAGCGCTCACAAATTACA 59.275 47.619 34.69 5.67 0.00 2.41
82 83 1.993370 AGTCGAGCGCTCACAAATTAC 59.007 47.619 34.69 19.44 0.00 1.89
83 84 2.363788 AGTCGAGCGCTCACAAATTA 57.636 45.000 34.69 9.58 0.00 1.40
84 85 1.512926 AAGTCGAGCGCTCACAAATT 58.487 45.000 34.69 21.61 0.00 1.82
85 86 1.512926 AAAGTCGAGCGCTCACAAAT 58.487 45.000 34.69 17.20 0.00 2.32
86 87 1.790623 GTAAAGTCGAGCGCTCACAAA 59.209 47.619 34.69 15.56 0.00 2.83
87 88 1.269361 TGTAAAGTCGAGCGCTCACAA 60.269 47.619 34.69 18.09 0.00 3.33
88 89 0.312729 TGTAAAGTCGAGCGCTCACA 59.687 50.000 34.69 26.25 0.00 3.58
89 90 1.415374 TTGTAAAGTCGAGCGCTCAC 58.585 50.000 34.69 28.50 0.00 3.51
90 91 2.259618 GATTGTAAAGTCGAGCGCTCA 58.740 47.619 34.69 20.09 0.00 4.26
91 92 1.253034 CGATTGTAAAGTCGAGCGCTC 59.747 52.381 27.64 27.64 40.11 5.03
92 93 1.269166 CGATTGTAAAGTCGAGCGCT 58.731 50.000 11.27 11.27 40.11 5.92
93 94 0.297820 CCGATTGTAAAGTCGAGCGC 59.702 55.000 0.00 0.00 40.11 5.92
94 95 1.625616 ACCGATTGTAAAGTCGAGCG 58.374 50.000 0.00 0.00 40.11 5.03
95 96 4.418392 TCTTACCGATTGTAAAGTCGAGC 58.582 43.478 0.00 0.00 38.91 5.03
96 97 7.521509 AAATCTTACCGATTGTAAAGTCGAG 57.478 36.000 0.00 0.00 41.42 4.04
97 98 7.894376 AAAATCTTACCGATTGTAAAGTCGA 57.106 32.000 0.00 0.00 41.42 4.20
132 133 9.953565 ACTAGCTGGAACATACAAAAATACTAA 57.046 29.630 3.17 0.00 38.20 2.24
133 134 9.953565 AACTAGCTGGAACATACAAAAATACTA 57.046 29.630 3.17 0.00 38.20 1.82
134 135 8.863872 AACTAGCTGGAACATACAAAAATACT 57.136 30.769 3.17 0.00 38.20 2.12
135 136 9.908152 AAAACTAGCTGGAACATACAAAAATAC 57.092 29.630 3.17 0.00 38.20 1.89
136 137 9.906660 CAAAACTAGCTGGAACATACAAAAATA 57.093 29.630 3.17 0.00 38.20 1.40
137 138 8.637986 TCAAAACTAGCTGGAACATACAAAAAT 58.362 29.630 3.17 0.00 38.20 1.82
138 139 8.001881 TCAAAACTAGCTGGAACATACAAAAA 57.998 30.769 3.17 0.00 38.20 1.94
139 140 7.575414 TCAAAACTAGCTGGAACATACAAAA 57.425 32.000 3.17 0.00 38.20 2.44
140 141 7.575414 TTCAAAACTAGCTGGAACATACAAA 57.425 32.000 3.17 0.00 38.20 2.83
141 142 7.759489 ATTCAAAACTAGCTGGAACATACAA 57.241 32.000 3.17 0.00 38.20 2.41
142 143 7.759489 AATTCAAAACTAGCTGGAACATACA 57.241 32.000 3.17 0.00 38.20 2.29
143 144 8.182227 GGTAATTCAAAACTAGCTGGAACATAC 58.818 37.037 3.17 2.84 38.20 2.39
144 145 7.885922 TGGTAATTCAAAACTAGCTGGAACATA 59.114 33.333 3.17 0.00 38.20 2.29
145 146 6.719370 TGGTAATTCAAAACTAGCTGGAACAT 59.281 34.615 3.17 0.00 38.20 2.71
146 147 6.065374 TGGTAATTCAAAACTAGCTGGAACA 58.935 36.000 3.17 0.00 0.00 3.18
147 148 6.569179 TGGTAATTCAAAACTAGCTGGAAC 57.431 37.500 3.17 0.00 0.00 3.62
148 149 7.775053 ATTGGTAATTCAAAACTAGCTGGAA 57.225 32.000 3.17 0.00 0.00 3.53
149 150 7.775053 AATTGGTAATTCAAAACTAGCTGGA 57.225 32.000 3.17 0.00 0.00 3.86
173 174 9.859427 CATGAGGTGCTGAAATTTAAAGAAATA 57.141 29.630 4.86 0.00 34.01 1.40
174 175 8.370182 ACATGAGGTGCTGAAATTTAAAGAAAT 58.630 29.630 0.00 0.00 36.82 2.17
175 176 7.725251 ACATGAGGTGCTGAAATTTAAAGAAA 58.275 30.769 0.00 0.00 0.00 2.52
176 177 7.014134 TGACATGAGGTGCTGAAATTTAAAGAA 59.986 33.333 0.00 0.00 0.00 2.52
177 178 6.489700 TGACATGAGGTGCTGAAATTTAAAGA 59.510 34.615 0.00 0.00 0.00 2.52
178 179 6.583806 GTGACATGAGGTGCTGAAATTTAAAG 59.416 38.462 0.00 0.00 0.00 1.85
179 180 6.446318 GTGACATGAGGTGCTGAAATTTAAA 58.554 36.000 0.00 0.00 0.00 1.52
180 181 5.048083 GGTGACATGAGGTGCTGAAATTTAA 60.048 40.000 0.00 0.00 0.00 1.52
181 182 4.458989 GGTGACATGAGGTGCTGAAATTTA 59.541 41.667 0.00 0.00 0.00 1.40
182 183 3.256631 GGTGACATGAGGTGCTGAAATTT 59.743 43.478 0.00 0.00 0.00 1.82
183 184 2.821969 GGTGACATGAGGTGCTGAAATT 59.178 45.455 0.00 0.00 0.00 1.82
184 185 2.040813 AGGTGACATGAGGTGCTGAAAT 59.959 45.455 0.00 0.00 0.00 2.17
185 186 1.421268 AGGTGACATGAGGTGCTGAAA 59.579 47.619 0.00 0.00 0.00 2.69
186 187 1.059098 AGGTGACATGAGGTGCTGAA 58.941 50.000 0.00 0.00 0.00 3.02
187 188 1.827344 CTAGGTGACATGAGGTGCTGA 59.173 52.381 0.00 0.00 0.00 4.26
188 189 1.552337 ACTAGGTGACATGAGGTGCTG 59.448 52.381 0.00 0.00 0.00 4.41
189 190 1.944177 ACTAGGTGACATGAGGTGCT 58.056 50.000 0.00 0.00 0.00 4.40
190 191 3.887621 TTACTAGGTGACATGAGGTGC 57.112 47.619 0.00 0.00 0.00 5.01
191 192 5.178797 CCTTTTACTAGGTGACATGAGGTG 58.821 45.833 0.00 0.00 0.00 4.00
192 193 4.323562 GCCTTTTACTAGGTGACATGAGGT 60.324 45.833 0.00 0.00 37.63 3.85
193 194 4.192317 GCCTTTTACTAGGTGACATGAGG 58.808 47.826 0.00 0.00 37.63 3.86
194 195 4.832248 TGCCTTTTACTAGGTGACATGAG 58.168 43.478 0.00 0.00 37.63 2.90
195 196 4.901197 TGCCTTTTACTAGGTGACATGA 57.099 40.909 0.00 0.00 37.63 3.07
196 197 5.647658 TGAATGCCTTTTACTAGGTGACATG 59.352 40.000 0.00 0.00 37.63 3.21
197 198 5.815581 TGAATGCCTTTTACTAGGTGACAT 58.184 37.500 0.00 0.00 37.63 3.06
198 199 5.235850 TGAATGCCTTTTACTAGGTGACA 57.764 39.130 0.00 0.00 37.63 3.58
199 200 5.297029 GGATGAATGCCTTTTACTAGGTGAC 59.703 44.000 0.00 0.00 37.63 3.67
200 201 5.045213 TGGATGAATGCCTTTTACTAGGTGA 60.045 40.000 0.00 0.00 37.63 4.02
201 202 5.192927 TGGATGAATGCCTTTTACTAGGTG 58.807 41.667 0.00 0.00 37.63 4.00
202 203 5.191722 TCTGGATGAATGCCTTTTACTAGGT 59.808 40.000 0.00 0.00 37.63 3.08
203 204 5.684704 TCTGGATGAATGCCTTTTACTAGG 58.315 41.667 0.00 0.00 38.40 3.02
204 205 7.337942 AGTTTCTGGATGAATGCCTTTTACTAG 59.662 37.037 0.00 0.00 34.24 2.57
205 206 7.175104 AGTTTCTGGATGAATGCCTTTTACTA 58.825 34.615 0.00 0.00 34.24 1.82
206 207 6.012745 AGTTTCTGGATGAATGCCTTTTACT 58.987 36.000 0.00 0.00 34.24 2.24
207 208 6.272822 AGTTTCTGGATGAATGCCTTTTAC 57.727 37.500 0.00 0.00 34.24 2.01
208 209 6.945435 TGTAGTTTCTGGATGAATGCCTTTTA 59.055 34.615 0.00 0.00 34.24 1.52
209 210 5.774690 TGTAGTTTCTGGATGAATGCCTTTT 59.225 36.000 0.00 0.00 34.24 2.27
210 211 5.324409 TGTAGTTTCTGGATGAATGCCTTT 58.676 37.500 0.00 0.00 34.24 3.11
211 212 4.922206 TGTAGTTTCTGGATGAATGCCTT 58.078 39.130 0.00 0.00 34.24 4.35
212 213 4.574674 TGTAGTTTCTGGATGAATGCCT 57.425 40.909 0.00 0.00 34.24 4.75
213 214 5.841957 ATTGTAGTTTCTGGATGAATGCC 57.158 39.130 0.00 0.00 34.24 4.40
214 215 7.989826 AGTAATTGTAGTTTCTGGATGAATGC 58.010 34.615 0.00 0.00 34.24 3.56
221 222 9.475620 TCTCATCTAGTAATTGTAGTTTCTGGA 57.524 33.333 0.00 0.00 0.00 3.86
237 238 9.602568 GATGCATCATTATCAATCTCATCTAGT 57.397 33.333 21.92 0.00 0.00 2.57
238 239 8.756864 CGATGCATCATTATCAATCTCATCTAG 58.243 37.037 25.70 0.00 0.00 2.43
239 240 7.224167 GCGATGCATCATTATCAATCTCATCTA 59.776 37.037 25.70 0.00 0.00 1.98
240 241 6.037281 GCGATGCATCATTATCAATCTCATCT 59.963 38.462 25.70 0.00 0.00 2.90
241 242 6.183360 TGCGATGCATCATTATCAATCTCATC 60.183 38.462 25.70 0.00 31.71 2.92
242 243 5.646360 TGCGATGCATCATTATCAATCTCAT 59.354 36.000 25.70 0.00 31.71 2.90
243 244 4.998672 TGCGATGCATCATTATCAATCTCA 59.001 37.500 25.70 0.00 31.71 3.27
244 245 5.350640 TCTGCGATGCATCATTATCAATCTC 59.649 40.000 25.70 0.00 38.13 2.75
245 246 5.243207 TCTGCGATGCATCATTATCAATCT 58.757 37.500 25.70 0.00 38.13 2.40
246 247 5.541098 TCTGCGATGCATCATTATCAATC 57.459 39.130 25.70 0.00 38.13 2.67
247 248 5.952526 TTCTGCGATGCATCATTATCAAT 57.047 34.783 25.70 0.00 38.13 2.57
248 249 5.239963 ACATTCTGCGATGCATCATTATCAA 59.760 36.000 25.70 10.64 38.13 2.57
249 250 4.758165 ACATTCTGCGATGCATCATTATCA 59.242 37.500 25.70 13.23 38.13 2.15
250 251 5.292671 ACATTCTGCGATGCATCATTATC 57.707 39.130 25.70 9.64 38.13 1.75
251 252 5.009310 ACAACATTCTGCGATGCATCATTAT 59.991 36.000 25.70 8.84 38.13 1.28
252 253 4.336153 ACAACATTCTGCGATGCATCATTA 59.664 37.500 25.70 10.43 38.13 1.90
253 254 3.129813 ACAACATTCTGCGATGCATCATT 59.870 39.130 25.70 0.75 38.13 2.57
254 255 2.686405 ACAACATTCTGCGATGCATCAT 59.314 40.909 25.70 8.95 38.13 2.45
255 256 2.086094 ACAACATTCTGCGATGCATCA 58.914 42.857 25.70 7.69 38.13 3.07
256 257 2.838386 ACAACATTCTGCGATGCATC 57.162 45.000 17.10 17.10 38.13 3.91
257 258 3.940852 TCTTACAACATTCTGCGATGCAT 59.059 39.130 0.00 0.00 38.13 3.96
258 259 3.333804 TCTTACAACATTCTGCGATGCA 58.666 40.909 0.00 0.00 36.92 3.96
259 260 4.340894 TTCTTACAACATTCTGCGATGC 57.659 40.909 0.00 0.00 0.00 3.91
260 261 7.752239 AGAAATTTCTTACAACATTCTGCGATG 59.248 33.333 15.11 0.00 32.55 3.84
261 262 7.820648 AGAAATTTCTTACAACATTCTGCGAT 58.179 30.769 15.11 0.00 32.55 4.58
262 263 7.202016 AGAAATTTCTTACAACATTCTGCGA 57.798 32.000 15.11 0.00 32.55 5.10
263 264 8.948853 TTAGAAATTTCTTACAACATTCTGCG 57.051 30.769 25.02 0.00 38.70 5.18
269 270 9.846248 GCACATCTTAGAAATTTCTTACAACAT 57.154 29.630 25.02 5.26 38.70 2.71
270 271 8.845227 TGCACATCTTAGAAATTTCTTACAACA 58.155 29.630 25.02 11.15 38.70 3.33
271 272 9.846248 ATGCACATCTTAGAAATTTCTTACAAC 57.154 29.630 25.02 8.98 38.70 3.32
294 295 9.979270 GCAGTACTCATATCAAATTACATATGC 57.021 33.333 1.58 0.00 34.28 3.14
298 299 9.632638 AAAGGCAGTACTCATATCAAATTACAT 57.367 29.630 0.00 0.00 0.00 2.29
299 300 9.109393 GAAAGGCAGTACTCATATCAAATTACA 57.891 33.333 0.00 0.00 0.00 2.41
300 301 9.109393 TGAAAGGCAGTACTCATATCAAATTAC 57.891 33.333 0.00 0.00 0.00 1.89
301 302 9.330063 CTGAAAGGCAGTACTCATATCAAATTA 57.670 33.333 0.00 0.00 39.85 1.40
302 303 8.218338 CTGAAAGGCAGTACTCATATCAAATT 57.782 34.615 0.00 0.00 39.85 1.82
303 304 7.798596 CTGAAAGGCAGTACTCATATCAAAT 57.201 36.000 0.00 0.00 39.85 2.32
318 319 1.689984 TTCATGTGCACTGAAAGGCA 58.310 45.000 21.65 6.45 39.30 4.75
319 320 2.798976 TTTCATGTGCACTGAAAGGC 57.201 45.000 26.58 1.01 37.61 4.35
320 321 6.392354 ACATTATTTCATGTGCACTGAAAGG 58.608 36.000 30.19 24.32 43.63 3.11
321 322 7.878477 AACATTATTTCATGTGCACTGAAAG 57.122 32.000 30.19 23.63 43.63 2.62
322 323 7.924947 TCAAACATTATTTCATGTGCACTGAAA 59.075 29.630 29.58 29.58 44.28 2.69
323 324 7.432059 TCAAACATTATTTCATGTGCACTGAA 58.568 30.769 19.41 20.18 37.46 3.02
324 325 6.979465 TCAAACATTATTTCATGTGCACTGA 58.021 32.000 19.41 15.64 37.46 3.41
325 326 7.821595 ATCAAACATTATTTCATGTGCACTG 57.178 32.000 19.41 13.55 37.46 3.66
326 327 8.522003 TGTATCAAACATTATTTCATGTGCACT 58.478 29.630 19.41 0.15 37.46 4.40
327 328 8.686397 TGTATCAAACATTATTTCATGTGCAC 57.314 30.769 10.75 10.75 37.46 4.57
379 380 7.948447 GGGGCTTTTTAGTATTAATAGGGACAT 59.052 37.037 0.00 0.00 0.00 3.06
380 381 7.292319 GGGGCTTTTTAGTATTAATAGGGACA 58.708 38.462 0.00 0.00 0.00 4.02
381 382 6.429078 CGGGGCTTTTTAGTATTAATAGGGAC 59.571 42.308 0.00 0.00 0.00 4.46
382 383 6.466182 CCGGGGCTTTTTAGTATTAATAGGGA 60.466 42.308 0.00 0.00 0.00 4.20
383 384 5.708697 CCGGGGCTTTTTAGTATTAATAGGG 59.291 44.000 0.00 0.00 0.00 3.53
384 385 5.708697 CCCGGGGCTTTTTAGTATTAATAGG 59.291 44.000 14.71 0.00 0.00 2.57
385 386 6.301486 ACCCGGGGCTTTTTAGTATTAATAG 58.699 40.000 27.92 0.00 0.00 1.73
386 387 6.264771 ACCCGGGGCTTTTTAGTATTAATA 57.735 37.500 27.92 0.00 0.00 0.98
387 388 5.133383 ACCCGGGGCTTTTTAGTATTAAT 57.867 39.130 27.92 0.00 0.00 1.40
388 389 4.589647 ACCCGGGGCTTTTTAGTATTAA 57.410 40.909 27.92 0.00 0.00 1.40
389 390 4.227982 AGAACCCGGGGCTTTTTAGTATTA 59.772 41.667 27.92 0.00 0.00 0.98
390 391 3.010920 AGAACCCGGGGCTTTTTAGTATT 59.989 43.478 27.92 4.60 0.00 1.89
391 392 2.579400 AGAACCCGGGGCTTTTTAGTAT 59.421 45.455 27.92 0.00 0.00 2.12
392 393 1.987368 AGAACCCGGGGCTTTTTAGTA 59.013 47.619 27.92 0.00 0.00 1.82
393 394 0.775542 AGAACCCGGGGCTTTTTAGT 59.224 50.000 27.92 0.00 0.00 2.24
394 395 2.237893 TCTAGAACCCGGGGCTTTTTAG 59.762 50.000 27.92 18.02 0.00 1.85
395 396 2.268107 TCTAGAACCCGGGGCTTTTTA 58.732 47.619 27.92 8.88 0.00 1.52
396 397 1.069775 TCTAGAACCCGGGGCTTTTT 58.930 50.000 27.92 9.65 0.00 1.94
397 398 1.296002 ATCTAGAACCCGGGGCTTTT 58.704 50.000 27.92 10.11 0.00 2.27
398 399 1.212195 GAATCTAGAACCCGGGGCTTT 59.788 52.381 27.92 10.56 0.00 3.51
399 400 0.837940 GAATCTAGAACCCGGGGCTT 59.162 55.000 27.92 11.47 0.00 4.35
400 401 1.400530 CGAATCTAGAACCCGGGGCT 61.401 60.000 27.92 23.44 0.00 5.19
401 402 1.069258 CGAATCTAGAACCCGGGGC 59.931 63.158 27.92 16.97 0.00 5.80
402 403 1.069258 GCGAATCTAGAACCCGGGG 59.931 63.158 27.92 12.73 0.00 5.73
403 404 1.069258 GGCGAATCTAGAACCCGGG 59.931 63.158 22.25 22.25 0.00 5.73
404 405 1.069258 GGGCGAATCTAGAACCCGG 59.931 63.158 0.00 0.00 0.00 5.73
405 406 1.069258 GGGGCGAATCTAGAACCCG 59.931 63.158 14.10 10.83 41.83 5.28
406 407 1.069258 CGGGGCGAATCTAGAACCC 59.931 63.158 12.77 12.77 40.05 4.11
407 408 1.069258 CCGGGGCGAATCTAGAACC 59.931 63.158 0.00 0.00 0.00 3.62
408 409 1.069258 CCCGGGGCGAATCTAGAAC 59.931 63.158 14.71 0.00 0.00 3.01
409 410 2.803817 GCCCGGGGCGAATCTAGAA 61.804 63.158 24.63 0.00 39.62 2.10
410 411 3.231736 GCCCGGGGCGAATCTAGA 61.232 66.667 24.63 0.00 39.62 2.43
424 425 2.361230 CTGAGTTTTCGGGGGCCC 60.361 66.667 15.76 15.76 0.00 5.80
425 426 2.361230 CCTGAGTTTTCGGGGGCC 60.361 66.667 0.00 0.00 44.82 5.80
430 431 2.033194 GCCGGTCCTGAGTTTTCGG 61.033 63.158 1.90 0.00 40.33 4.30
431 432 2.033194 GGCCGGTCCTGAGTTTTCG 61.033 63.158 1.90 0.00 0.00 3.46
432 433 1.674651 GGGCCGGTCCTGAGTTTTC 60.675 63.158 20.78 0.00 34.39 2.29
433 434 2.154074 AGGGCCGGTCCTGAGTTTT 61.154 57.895 31.20 0.00 35.47 2.43
434 435 2.529389 AGGGCCGGTCCTGAGTTT 60.529 61.111 31.20 0.00 35.47 2.66
459 460 3.733344 TTATGGCTGCTCCGACGCC 62.733 63.158 0.00 0.00 44.02 5.68
460 461 2.202878 TTATGGCTGCTCCGACGC 60.203 61.111 0.00 0.00 37.80 5.19
461 462 1.148157 CTGTTATGGCTGCTCCGACG 61.148 60.000 0.00 0.00 37.80 5.12
462 463 0.811616 CCTGTTATGGCTGCTCCGAC 60.812 60.000 0.00 0.00 37.80 4.79
463 464 0.975556 TCCTGTTATGGCTGCTCCGA 60.976 55.000 0.00 0.00 37.80 4.55
464 465 0.531532 CTCCTGTTATGGCTGCTCCG 60.532 60.000 0.00 0.00 37.80 4.63
465 466 0.833287 TCTCCTGTTATGGCTGCTCC 59.167 55.000 0.00 0.00 0.00 4.70
466 467 2.492012 CATCTCCTGTTATGGCTGCTC 58.508 52.381 0.00 0.00 0.00 4.26
467 468 1.142465 CCATCTCCTGTTATGGCTGCT 59.858 52.381 0.00 0.00 36.50 4.24
468 469 1.133976 ACCATCTCCTGTTATGGCTGC 60.134 52.381 0.00 0.00 45.53 5.25
469 470 2.569059 CACCATCTCCTGTTATGGCTG 58.431 52.381 0.00 0.00 45.53 4.85
470 471 1.492176 CCACCATCTCCTGTTATGGCT 59.508 52.381 0.00 0.00 45.53 4.75
471 472 1.972872 CCACCATCTCCTGTTATGGC 58.027 55.000 0.00 0.00 45.53 4.40
472 473 1.212688 TGCCACCATCTCCTGTTATGG 59.787 52.381 0.00 0.00 46.76 2.74
473 474 2.715749 TGCCACCATCTCCTGTTATG 57.284 50.000 0.00 0.00 0.00 1.90
474 475 3.559069 CATTGCCACCATCTCCTGTTAT 58.441 45.455 0.00 0.00 0.00 1.89
475 476 2.945440 GCATTGCCACCATCTCCTGTTA 60.945 50.000 0.00 0.00 0.00 2.41
476 477 1.843368 CATTGCCACCATCTCCTGTT 58.157 50.000 0.00 0.00 0.00 3.16
477 478 0.682209 GCATTGCCACCATCTCCTGT 60.682 55.000 0.00 0.00 0.00 4.00
478 479 1.721664 CGCATTGCCACCATCTCCTG 61.722 60.000 2.41 0.00 0.00 3.86
479 480 1.452651 CGCATTGCCACCATCTCCT 60.453 57.895 2.41 0.00 0.00 3.69
480 481 1.750399 ACGCATTGCCACCATCTCC 60.750 57.895 2.41 0.00 0.00 3.71
481 482 1.430632 CACGCATTGCCACCATCTC 59.569 57.895 2.41 0.00 0.00 2.75
482 483 2.703798 GCACGCATTGCCACCATCT 61.704 57.895 2.41 0.00 46.63 2.90
483 484 2.202650 GCACGCATTGCCACCATC 60.203 61.111 2.41 0.00 46.63 3.51
497 498 3.838795 GACATCGTGGCGTCGCAC 61.839 66.667 20.50 13.80 0.00 5.34
500 501 4.470170 TCGGACATCGTGGCGTCG 62.470 66.667 0.00 0.00 40.32 5.12
501 502 2.879462 GTCGGACATCGTGGCGTC 60.879 66.667 2.62 0.00 40.32 5.19
502 503 3.371063 AGTCGGACATCGTGGCGT 61.371 61.111 11.27 0.00 40.32 5.68
503 504 2.880879 CAGTCGGACATCGTGGCG 60.881 66.667 11.27 0.00 40.32 5.69
504 505 3.188786 GCAGTCGGACATCGTGGC 61.189 66.667 11.27 0.58 40.32 5.01
505 506 2.880879 CGCAGTCGGACATCGTGG 60.881 66.667 11.27 0.00 40.32 4.94
506 507 2.126463 ACGCAGTCGGACATCGTG 60.126 61.111 20.98 13.18 29.74 4.35
507 508 2.126463 CACGCAGTCGGACATCGT 60.126 61.111 17.66 17.66 41.61 3.73
508 509 2.880879 CCACGCAGTCGGACATCG 60.881 66.667 11.27 14.48 41.61 3.84
509 510 2.094659 CACCACGCAGTCGGACATC 61.095 63.158 11.27 0.35 41.61 3.06
510 511 2.048222 CACCACGCAGTCGGACAT 60.048 61.111 11.27 0.00 41.61 3.06
511 512 3.083848 AACACCACGCAGTCGGACA 62.084 57.895 11.27 0.00 41.61 4.02
512 513 2.279918 AACACCACGCAGTCGGAC 60.280 61.111 0.00 0.00 41.61 4.79
513 514 2.279851 CAACACCACGCAGTCGGA 60.280 61.111 0.00 0.00 41.61 4.55
514 515 3.345808 CCAACACCACGCAGTCGG 61.346 66.667 0.00 0.00 41.61 4.79
515 516 1.667830 ATCCAACACCACGCAGTCG 60.668 57.895 0.00 0.00 41.61 4.18
516 517 0.602638 TCATCCAACACCACGCAGTC 60.603 55.000 0.00 0.00 41.61 3.51
517 518 2.413862 GTTCATCCAACACCACGCAGT 61.414 52.381 0.00 0.00 36.44 4.40
518 519 0.238289 GTTCATCCAACACCACGCAG 59.762 55.000 0.00 0.00 34.76 5.18
519 520 1.169661 GGTTCATCCAACACCACGCA 61.170 55.000 0.00 0.00 36.61 5.24
520 521 1.169661 TGGTTCATCCAACACCACGC 61.170 55.000 0.00 0.00 44.12 5.34
521 522 0.874390 CTGGTTCATCCAACACCACG 59.126 55.000 0.00 0.00 46.59 4.94
522 523 1.880027 GTCTGGTTCATCCAACACCAC 59.120 52.381 0.00 0.00 46.59 4.16
523 524 1.542328 CGTCTGGTTCATCCAACACCA 60.542 52.381 0.00 0.00 46.59 4.17
524 525 1.156736 CGTCTGGTTCATCCAACACC 58.843 55.000 0.00 0.00 46.59 4.16
525 526 2.069273 CTCGTCTGGTTCATCCAACAC 58.931 52.381 0.00 0.00 46.59 3.32
526 527 1.001974 CCTCGTCTGGTTCATCCAACA 59.998 52.381 0.00 0.00 46.59 3.33
527 528 1.275291 TCCTCGTCTGGTTCATCCAAC 59.725 52.381 0.00 0.00 46.59 3.77
528 529 1.275291 GTCCTCGTCTGGTTCATCCAA 59.725 52.381 0.00 0.00 46.59 3.53
529 530 0.895530 GTCCTCGTCTGGTTCATCCA 59.104 55.000 0.00 0.00 45.01 3.41
530 531 0.179134 CGTCCTCGTCTGGTTCATCC 60.179 60.000 0.00 0.00 0.00 3.51
531 532 0.179134 CCGTCCTCGTCTGGTTCATC 60.179 60.000 0.00 0.00 35.01 2.92
532 533 0.611062 TCCGTCCTCGTCTGGTTCAT 60.611 55.000 0.00 0.00 35.01 2.57
533 534 1.228337 TCCGTCCTCGTCTGGTTCA 60.228 57.895 0.00 0.00 35.01 3.18
534 535 1.212229 GTCCGTCCTCGTCTGGTTC 59.788 63.158 0.00 0.00 35.01 3.62
535 536 2.273912 GGTCCGTCCTCGTCTGGTT 61.274 63.158 0.00 0.00 35.01 3.67
536 537 2.675772 GGTCCGTCCTCGTCTGGT 60.676 66.667 0.00 0.00 35.01 4.00
537 538 3.812019 CGGTCCGTCCTCGTCTGG 61.812 72.222 2.08 0.00 35.01 3.86
538 539 3.812019 CCGGTCCGTCCTCGTCTG 61.812 72.222 11.06 0.00 35.01 3.51
546 547 4.446413 ACAATCGCCCGGTCCGTC 62.446 66.667 11.06 0.38 0.00 4.79
547 548 4.752879 CACAATCGCCCGGTCCGT 62.753 66.667 11.06 0.00 0.00 4.69
548 549 4.752879 ACACAATCGCCCGGTCCG 62.753 66.667 3.60 3.60 0.00 4.79
549 550 3.124921 CACACAATCGCCCGGTCC 61.125 66.667 0.00 0.00 0.00 4.46
550 551 2.047655 TCACACAATCGCCCGGTC 60.048 61.111 0.00 0.00 0.00 4.79
551 552 2.358247 GTCACACAATCGCCCGGT 60.358 61.111 0.00 0.00 0.00 5.28
552 553 3.487202 CGTCACACAATCGCCCGG 61.487 66.667 0.00 0.00 0.00 5.73
553 554 3.487202 CCGTCACACAATCGCCCG 61.487 66.667 0.00 0.00 0.00 6.13
554 555 1.635663 CTTCCGTCACACAATCGCCC 61.636 60.000 0.00 0.00 0.00 6.13
555 556 0.949105 ACTTCCGTCACACAATCGCC 60.949 55.000 0.00 0.00 0.00 5.54
556 557 0.163788 CACTTCCGTCACACAATCGC 59.836 55.000 0.00 0.00 0.00 4.58
557 558 0.163788 GCACTTCCGTCACACAATCG 59.836 55.000 0.00 0.00 0.00 3.34
558 559 1.512926 AGCACTTCCGTCACACAATC 58.487 50.000 0.00 0.00 0.00 2.67
559 560 1.873591 GAAGCACTTCCGTCACACAAT 59.126 47.619 0.00 0.00 33.64 2.71
560 561 1.295792 GAAGCACTTCCGTCACACAA 58.704 50.000 0.00 0.00 33.64 3.33
561 562 0.874175 CGAAGCACTTCCGTCACACA 60.874 55.000 4.86 0.00 36.27 3.72
585 586 2.617021 GGATAGAACGTGGCAAGGGAAA 60.617 50.000 5.22 0.00 0.00 3.13
589 590 0.251916 TGGGATAGAACGTGGCAAGG 59.748 55.000 5.22 0.00 0.00 3.61
672 681 2.350388 CGCGTGAAAAATGTTACAGGCT 60.350 45.455 0.00 0.00 40.41 4.58
692 821 3.059461 TGCTAACCGCTTAAGAAAACACG 60.059 43.478 6.67 0.00 40.11 4.49
711 840 3.210012 ATGGCCCGGTCAAAGTGCT 62.210 57.895 0.00 0.00 0.00 4.40
950 1708 4.680237 CTCCACGCCTCGGCAACA 62.680 66.667 8.87 0.00 42.06 3.33
1109 2053 2.573869 CGTGACGACTGGATGCCT 59.426 61.111 0.00 0.00 0.00 4.75
1137 2099 0.322277 CCTTGAGCAGCCACATCACT 60.322 55.000 0.00 0.00 0.00 3.41
1428 2424 9.258629 AGATCAATCAAACTTATCCCAATCAAA 57.741 29.630 0.00 0.00 0.00 2.69
1477 2475 8.636213 ACAACATGAGATCAACTTTTTCTTGAT 58.364 29.630 0.00 0.00 40.38 2.57
1662 2995 2.359354 TGCACGTACCCATGGCAC 60.359 61.111 6.09 5.39 0.00 5.01
1759 3140 3.073062 AGAGCAGGAACAAACCAGTGTAT 59.927 43.478 0.00 0.00 0.00 2.29
1798 3180 8.209917 ACTTGAAGAACTCGTGAAAAGTTAAT 57.790 30.769 0.00 0.00 37.10 1.40
1799 3181 7.605410 ACTTGAAGAACTCGTGAAAAGTTAA 57.395 32.000 0.00 0.00 37.10 2.01
1930 3424 8.153479 TCAAAATGACTCATATTGGAATACCG 57.847 34.615 0.00 0.00 39.42 4.02
2105 3599 9.419297 GTTCAGACGATTGGTAATGCTATATAA 57.581 33.333 0.00 0.00 0.00 0.98
2303 3811 5.447624 AACCTGCAAAGTAATGTACAACC 57.552 39.130 0.00 0.00 0.00 3.77


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.