Multiple sequence alignment - TraesCS2A01G211100

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS2A01G211100 chr2A 100.000 5633 0 0 1 5633 195308198 195313830 0.000000e+00 10403.0
1 TraesCS2A01G211100 chr2B 95.812 3200 89 21 726 3885 237343199 237346393 0.000000e+00 5125.0
2 TraesCS2A01G211100 chr2B 94.501 982 39 6 4399 5373 237347483 237348456 0.000000e+00 1500.0
3 TraesCS2A01G211100 chr2B 97.049 576 17 0 3679 4254 237346768 237347343 0.000000e+00 970.0
4 TraesCS2A01G211100 chr2B 83.088 272 34 5 286 546 237342820 237343090 2.620000e-58 237.0
5 TraesCS2A01G211100 chr2B 95.276 127 6 0 3679 3805 237346389 237346515 9.570000e-48 202.0
6 TraesCS2A01G211100 chr2B 87.135 171 17 3 542 710 237343044 237343211 7.450000e-44 189.0
7 TraesCS2A01G211100 chr2B 93.548 124 8 0 4251 4374 237347373 237347496 9.640000e-43 185.0
8 TraesCS2A01G211100 chr2D 96.072 1502 43 6 2197 3685 180877917 180879415 0.000000e+00 2433.0
9 TraesCS2A01G211100 chr2D 96.386 1356 43 5 726 2075 180876562 180877917 0.000000e+00 2228.0
10 TraesCS2A01G211100 chr2D 95.431 1160 48 4 4251 5409 180880341 180881496 0.000000e+00 1844.0
11 TraesCS2A01G211100 chr2D 95.812 573 21 2 3682 4254 180879742 180880311 0.000000e+00 922.0
12 TraesCS2A01G211100 chr2D 95.217 230 9 1 5406 5633 180881752 180881981 4.150000e-96 363.0
13 TraesCS2A01G211100 chr2D 88.722 266 15 2 268 521 180876180 180876442 1.520000e-80 311.0
14 TraesCS2A01G211100 chr2D 84.974 193 28 1 2368 2559 443727849 443728041 1.600000e-45 195.0
15 TraesCS2A01G211100 chr2D 88.489 139 9 6 574 710 180876441 180876574 1.620000e-35 161.0
16 TraesCS2A01G211100 chr4A 80.712 534 89 11 2022 2550 45110726 45110202 2.440000e-108 403.0
17 TraesCS2A01G211100 chr4A 92.638 163 12 0 7 169 162249048 162249210 9.430000e-58 235.0
18 TraesCS2A01G211100 chr4A 75.365 548 93 30 2032 2560 45110202 45110726 5.680000e-55 226.0
19 TraesCS2A01G211100 chr6A 80.399 551 89 11 2014 2561 592867441 592867975 8.790000e-108 401.0
20 TraesCS2A01G211100 chr6A 78.089 429 69 17 2014 2436 596431064 596430655 1.210000e-61 248.0
21 TraesCS2A01G211100 chr3B 79.924 528 87 11 2033 2555 625197531 625197018 2.480000e-98 370.0
22 TraesCS2A01G211100 chr4B 78.815 557 90 22 2012 2558 78490138 78490676 3.230000e-92 350.0
23 TraesCS2A01G211100 chr5D 80.501 359 54 12 2207 2561 478682614 478682960 1.560000e-65 261.0
24 TraesCS2A01G211100 chr6B 92.899 169 12 0 1 169 409304471 409304303 4.360000e-61 246.0
25 TraesCS2A01G211100 chr6B 91.279 172 12 3 9 180 25841191 25841023 1.220000e-56 231.0
26 TraesCS2A01G211100 chr6B 91.558 154 12 1 4937 5090 648090060 648090212 1.590000e-50 211.0
27 TraesCS2A01G211100 chr7B 92.308 169 13 0 1 169 427413940 427414108 2.030000e-59 241.0
28 TraesCS2A01G211100 chr5A 92.308 169 13 0 1 169 594985304 594985136 2.030000e-59 241.0
29 TraesCS2A01G211100 chr5A 92.638 163 12 0 7 169 128869394 128869556 9.430000e-58 235.0
30 TraesCS2A01G211100 chr5A 94.558 147 8 0 4940 5086 396688832 396688686 1.580000e-55 228.0
31 TraesCS2A01G211100 chr5A 86.624 157 21 0 4939 5095 377415951 377416107 2.090000e-39 174.0
32 TraesCS2A01G211100 chr5A 85.276 163 23 1 4940 5101 130540665 130540503 3.490000e-37 167.0
33 TraesCS2A01G211100 chr3A 92.216 167 13 0 3 169 164956975 164957141 2.620000e-58 237.0
34 TraesCS2A01G211100 chr3A 85.455 165 21 3 1159 1322 556547876 556548038 9.710000e-38 169.0
35 TraesCS2A01G211100 chr1D 92.593 162 12 0 7 168 387968658 387968497 3.390000e-57 233.0
36 TraesCS2A01G211100 chr1D 91.617 167 14 0 1 167 137958337 137958171 1.220000e-56 231.0
37 TraesCS2A01G211100 chr1D 86.709 158 20 1 4939 5096 111003372 111003528 2.090000e-39 174.0
38 TraesCS2A01G211100 chr6D 91.667 156 13 0 4937 5092 429842081 429842236 3.420000e-52 217.0
39 TraesCS2A01G211100 chr5B 93.333 135 9 0 4959 5093 317304203 317304069 3.440000e-47 200.0
40 TraesCS2A01G211100 chr5B 86.207 87 9 3 3638 3723 491230167 491230251 2.160000e-14 91.6
41 TraesCS2A01G211100 chr3D 82.915 199 32 2 1159 1356 429308304 429308107 1.610000e-40 178.0
42 TraesCS2A01G211100 chr3D 88.608 79 5 2 3638 3712 169888137 169888215 6.010000e-15 93.5
43 TraesCS2A01G211100 chrUn 92.000 75 6 0 3638 3712 31324795 31324869 7.720000e-19 106.0
44 TraesCS2A01G211100 chr7D 88.750 80 7 2 3638 3716 586784172 586784250 4.650000e-16 97.1
45 TraesCS2A01G211100 chr7D 88.608 79 8 1 3638 3716 383219944 383219867 1.670000e-15 95.3
46 TraesCS2A01G211100 chr7A 87.342 79 9 1 3638 3716 431988162 431988085 7.770000e-14 89.8


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS2A01G211100 chr2A 195308198 195313830 5632 False 10403.000000 10403 100.000000 1 5633 1 chr2A.!!$F1 5632
1 TraesCS2A01G211100 chr2B 237342820 237348456 5636 False 1201.142857 5125 92.344143 286 5373 7 chr2B.!!$F1 5087
2 TraesCS2A01G211100 chr2D 180876180 180881981 5801 False 1180.285714 2433 93.732714 268 5633 7 chr2D.!!$F2 5365
3 TraesCS2A01G211100 chr4A 45110202 45110726 524 True 403.000000 403 80.712000 2022 2550 1 chr4A.!!$R1 528
4 TraesCS2A01G211100 chr4A 45110202 45110726 524 False 226.000000 226 75.365000 2032 2560 1 chr4A.!!$F1 528
5 TraesCS2A01G211100 chr6A 592867441 592867975 534 False 401.000000 401 80.399000 2014 2561 1 chr6A.!!$F1 547
6 TraesCS2A01G211100 chr3B 625197018 625197531 513 True 370.000000 370 79.924000 2033 2555 1 chr3B.!!$R1 522
7 TraesCS2A01G211100 chr4B 78490138 78490676 538 False 350.000000 350 78.815000 2012 2558 1 chr4B.!!$F1 546

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
111 112 0.034896 TTCTGCTCCTCGTTGGGTTC 59.965 55.000 0.00 0.0 36.20 3.62 F
234 235 0.106894 GACCCGATGGATGTCTTCCC 59.893 60.000 2.43 0.0 44.77 3.97 F
238 239 0.249489 CGATGGATGTCTTCCCGACC 60.249 60.000 2.43 0.0 44.77 4.79 F
239 240 0.106894 GATGGATGTCTTCCCGACCC 59.893 60.000 2.43 0.0 44.77 4.46 F
569 599 0.255890 AGCCGTGCAACTATCCCATT 59.744 50.000 0.00 0.0 31.75 3.16 F
866 905 0.387929 TTCGACTTCCACTTGACGCT 59.612 50.000 0.00 0.0 0.00 5.07 F
869 908 1.070577 CGACTTCCACTTGACGCTTTG 60.071 52.381 0.00 0.0 0.00 2.77 F
1137 1186 1.860078 CGTCTTCTTCACCAACGCC 59.140 57.895 0.00 0.0 0.00 5.68 F
3227 3325 1.006813 TCTCTCTTCTGGCCTCCTCT 58.993 55.000 3.32 0.0 0.00 3.69 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1518 1567 0.816825 CCTTGCTCCCCATGATCACG 60.817 60.000 0.00 0.00 0.00 4.35 R
2178 2240 2.034221 GACAAGTGGGGTCCAGGC 59.966 66.667 0.00 0.00 32.34 4.85 R
2239 2302 8.777865 TTCTAATTTCATTCTCTGTGTACTGG 57.222 34.615 0.00 0.00 0.00 4.00 R
2382 2459 1.453155 CCATGGACACTACTTGCCAC 58.547 55.000 5.56 0.00 35.17 5.01 R
2706 2803 2.319136 TATGCCCAATGTGTCGTACC 57.681 50.000 0.00 0.00 0.00 3.34 R
2759 2856 2.159476 CCTGTCCATGCTGAAAATGACG 60.159 50.000 0.00 0.00 0.00 4.35 R
3226 3324 4.212143 TCTCCATCATTGACAAGGTGAG 57.788 45.455 0.00 5.37 0.00 3.51 R
3315 3413 0.966179 TGGCACATGACACTCGTACT 59.034 50.000 0.00 0.00 0.00 2.73 R
5537 6528 0.178984 GGGGAGGGGAAAACGAACAA 60.179 55.000 0.00 0.00 0.00 2.83 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
32 33 9.686683 ACAAATTACCTTGCTATCAAACTATCT 57.313 29.630 0.00 0.00 0.00 1.98
33 34 9.941664 CAAATTACCTTGCTATCAAACTATCTG 57.058 33.333 0.00 0.00 0.00 2.90
34 35 9.686683 AAATTACCTTGCTATCAAACTATCTGT 57.313 29.630 0.00 0.00 0.00 3.41
35 36 9.686683 AATTACCTTGCTATCAAACTATCTGTT 57.313 29.630 0.00 0.00 41.29 3.16
38 39 8.894768 ACCTTGCTATCAAACTATCTGTTATC 57.105 34.615 0.00 0.00 38.03 1.75
39 40 7.653713 ACCTTGCTATCAAACTATCTGTTATCG 59.346 37.037 0.00 0.00 38.03 2.92
40 41 7.867909 CCTTGCTATCAAACTATCTGTTATCGA 59.132 37.037 0.00 0.00 38.03 3.59
41 42 9.416794 CTTGCTATCAAACTATCTGTTATCGAT 57.583 33.333 2.16 2.16 38.03 3.59
56 57 8.335356 TCTGTTATCGATAATTTTAGTGCTTGC 58.665 33.333 20.21 4.24 0.00 4.01
57 58 7.980062 TGTTATCGATAATTTTAGTGCTTGCA 58.020 30.769 20.21 6.65 0.00 4.08
58 59 8.122330 TGTTATCGATAATTTTAGTGCTTGCAG 58.878 33.333 20.21 0.00 0.00 4.41
59 60 6.925610 ATCGATAATTTTAGTGCTTGCAGA 57.074 33.333 0.00 0.00 0.00 4.26
60 61 6.106877 TCGATAATTTTAGTGCTTGCAGAC 57.893 37.500 0.00 0.00 0.00 3.51
61 62 5.641636 TCGATAATTTTAGTGCTTGCAGACA 59.358 36.000 0.00 0.00 0.00 3.41
62 63 6.148645 TCGATAATTTTAGTGCTTGCAGACAA 59.851 34.615 0.00 0.00 0.00 3.18
63 64 6.968904 CGATAATTTTAGTGCTTGCAGACAAT 59.031 34.615 0.00 0.00 34.61 2.71
64 65 8.122330 CGATAATTTTAGTGCTTGCAGACAATA 58.878 33.333 0.00 0.00 34.61 1.90
65 66 9.787532 GATAATTTTAGTGCTTGCAGACAATAA 57.212 29.630 6.80 6.80 34.61 1.40
66 67 7.873739 AATTTTAGTGCTTGCAGACAATAAC 57.126 32.000 9.56 0.00 34.61 1.89
67 68 6.633500 TTTTAGTGCTTGCAGACAATAACT 57.367 33.333 9.56 1.43 36.14 2.24
68 69 6.633500 TTTAGTGCTTGCAGACAATAACTT 57.367 33.333 9.56 0.00 34.73 2.66
69 70 7.737972 TTTAGTGCTTGCAGACAATAACTTA 57.262 32.000 9.56 0.00 34.73 2.24
70 71 7.921786 TTAGTGCTTGCAGACAATAACTTAT 57.078 32.000 6.80 0.00 34.73 1.73
71 72 6.824305 AGTGCTTGCAGACAATAACTTATT 57.176 33.333 0.00 0.00 34.61 1.40
73 74 6.430925 AGTGCTTGCAGACAATAACTTATTGA 59.569 34.615 22.90 3.02 46.52 2.57
74 75 7.040478 AGTGCTTGCAGACAATAACTTATTGAA 60.040 33.333 22.90 9.37 46.52 2.69
75 76 7.594758 GTGCTTGCAGACAATAACTTATTGAAA 59.405 33.333 22.90 10.88 46.52 2.69
76 77 8.140628 TGCTTGCAGACAATAACTTATTGAAAA 58.859 29.630 22.90 11.12 46.52 2.29
77 78 8.427774 GCTTGCAGACAATAACTTATTGAAAAC 58.572 33.333 22.90 12.48 46.52 2.43
78 79 9.683069 CTTGCAGACAATAACTTATTGAAAACT 57.317 29.630 22.90 14.45 46.52 2.66
79 80 9.462174 TTGCAGACAATAACTTATTGAAAACTG 57.538 29.630 22.90 21.81 46.52 3.16
80 81 7.594758 TGCAGACAATAACTTATTGAAAACTGC 59.405 33.333 29.20 29.20 46.52 4.40
81 82 7.809806 GCAGACAATAACTTATTGAAAACTGCT 59.190 33.333 28.98 13.30 46.52 4.24
82 83 9.683069 CAGACAATAACTTATTGAAAACTGCTT 57.317 29.630 22.90 2.85 46.52 3.91
96 97 9.467258 TTGAAAACTGCTTATCATTTTCTTCTG 57.533 29.630 9.08 0.00 40.25 3.02
97 98 7.596248 TGAAAACTGCTTATCATTTTCTTCTGC 59.404 33.333 9.08 0.00 40.25 4.26
98 99 6.830873 AACTGCTTATCATTTTCTTCTGCT 57.169 33.333 0.00 0.00 0.00 4.24
99 100 6.434018 ACTGCTTATCATTTTCTTCTGCTC 57.566 37.500 0.00 0.00 0.00 4.26
100 101 5.356470 ACTGCTTATCATTTTCTTCTGCTCC 59.644 40.000 0.00 0.00 0.00 4.70
101 102 5.503927 TGCTTATCATTTTCTTCTGCTCCT 58.496 37.500 0.00 0.00 0.00 3.69
102 103 5.587844 TGCTTATCATTTTCTTCTGCTCCTC 59.412 40.000 0.00 0.00 0.00 3.71
103 104 5.277250 GCTTATCATTTTCTTCTGCTCCTCG 60.277 44.000 0.00 0.00 0.00 4.63
104 105 3.685139 TCATTTTCTTCTGCTCCTCGT 57.315 42.857 0.00 0.00 0.00 4.18
105 106 4.008074 TCATTTTCTTCTGCTCCTCGTT 57.992 40.909 0.00 0.00 0.00 3.85
106 107 3.748048 TCATTTTCTTCTGCTCCTCGTTG 59.252 43.478 0.00 0.00 0.00 4.10
107 108 2.169832 TTTCTTCTGCTCCTCGTTGG 57.830 50.000 0.00 0.00 37.10 3.77
108 109 0.321671 TTCTTCTGCTCCTCGTTGGG 59.678 55.000 0.00 0.00 36.20 4.12
109 110 0.832135 TCTTCTGCTCCTCGTTGGGT 60.832 55.000 0.00 0.00 36.20 4.51
110 111 0.035458 CTTCTGCTCCTCGTTGGGTT 59.965 55.000 0.00 0.00 36.20 4.11
111 112 0.034896 TTCTGCTCCTCGTTGGGTTC 59.965 55.000 0.00 0.00 36.20 3.62
112 113 1.738099 CTGCTCCTCGTTGGGTTCG 60.738 63.158 0.00 0.00 36.20 3.95
113 114 2.154798 CTGCTCCTCGTTGGGTTCGA 62.155 60.000 0.00 0.00 36.20 3.71
114 115 1.737008 GCTCCTCGTTGGGTTCGAC 60.737 63.158 0.00 0.00 36.20 4.20
115 116 1.663739 CTCCTCGTTGGGTTCGACA 59.336 57.895 0.00 0.00 36.20 4.35
116 117 0.666577 CTCCTCGTTGGGTTCGACAC 60.667 60.000 0.00 0.00 36.20 3.67
117 118 1.111116 TCCTCGTTGGGTTCGACACT 61.111 55.000 0.00 0.00 36.20 3.55
118 119 0.666577 CCTCGTTGGGTTCGACACTC 60.667 60.000 0.00 0.00 33.71 3.51
119 120 0.314302 CTCGTTGGGTTCGACACTCT 59.686 55.000 0.00 0.00 33.71 3.24
120 121 0.748450 TCGTTGGGTTCGACACTCTT 59.252 50.000 0.00 0.00 32.30 2.85
121 122 1.955778 TCGTTGGGTTCGACACTCTTA 59.044 47.619 0.00 0.00 32.30 2.10
122 123 2.056577 CGTTGGGTTCGACACTCTTAC 58.943 52.381 0.00 0.00 0.00 2.34
123 124 2.288030 CGTTGGGTTCGACACTCTTACT 60.288 50.000 0.00 0.00 0.00 2.24
124 125 3.725490 GTTGGGTTCGACACTCTTACTT 58.275 45.455 0.00 0.00 0.00 2.24
125 126 4.557296 CGTTGGGTTCGACACTCTTACTTA 60.557 45.833 0.00 0.00 0.00 2.24
126 127 5.476614 GTTGGGTTCGACACTCTTACTTAT 58.523 41.667 0.00 0.00 0.00 1.73
127 128 5.320549 TGGGTTCGACACTCTTACTTATC 57.679 43.478 0.00 0.00 0.00 1.75
128 129 4.768448 TGGGTTCGACACTCTTACTTATCA 59.232 41.667 0.00 0.00 0.00 2.15
129 130 5.244402 TGGGTTCGACACTCTTACTTATCAA 59.756 40.000 0.00 0.00 0.00 2.57
130 131 6.161381 GGGTTCGACACTCTTACTTATCAAA 58.839 40.000 0.00 0.00 0.00 2.69
131 132 6.647895 GGGTTCGACACTCTTACTTATCAAAA 59.352 38.462 0.00 0.00 0.00 2.44
132 133 7.148623 GGGTTCGACACTCTTACTTATCAAAAG 60.149 40.741 0.00 0.00 0.00 2.27
133 134 7.148623 GGTTCGACACTCTTACTTATCAAAAGG 60.149 40.741 0.00 0.00 0.00 3.11
134 135 7.223260 TCGACACTCTTACTTATCAAAAGGA 57.777 36.000 0.00 0.00 0.00 3.36
135 136 7.088905 TCGACACTCTTACTTATCAAAAGGAC 58.911 38.462 0.00 0.00 0.00 3.85
136 137 7.039923 TCGACACTCTTACTTATCAAAAGGACT 60.040 37.037 0.00 0.00 0.00 3.85
137 138 8.242053 CGACACTCTTACTTATCAAAAGGACTA 58.758 37.037 0.00 0.00 0.00 2.59
138 139 9.356433 GACACTCTTACTTATCAAAAGGACTAC 57.644 37.037 0.00 0.00 0.00 2.73
139 140 8.027771 ACACTCTTACTTATCAAAAGGACTACG 58.972 37.037 0.00 0.00 0.00 3.51
140 141 8.242053 CACTCTTACTTATCAAAAGGACTACGA 58.758 37.037 0.00 0.00 0.00 3.43
141 142 8.968969 ACTCTTACTTATCAAAAGGACTACGAT 58.031 33.333 0.00 0.00 0.00 3.73
142 143 9.804758 CTCTTACTTATCAAAAGGACTACGATT 57.195 33.333 0.00 0.00 0.00 3.34
143 144 9.582431 TCTTACTTATCAAAAGGACTACGATTG 57.418 33.333 0.00 0.00 0.00 2.67
144 145 9.582431 CTTACTTATCAAAAGGACTACGATTGA 57.418 33.333 0.00 0.00 34.57 2.57
146 147 8.649973 ACTTATCAAAAGGACTACGATTGATC 57.350 34.615 2.87 0.00 38.91 2.92
147 148 7.711339 ACTTATCAAAAGGACTACGATTGATCC 59.289 37.037 2.87 0.00 38.91 3.36
148 149 4.766375 TCAAAAGGACTACGATTGATCCC 58.234 43.478 0.00 0.00 30.99 3.85
149 150 3.840124 AAAGGACTACGATTGATCCCC 57.160 47.619 0.00 0.00 30.99 4.81
150 151 2.777459 AGGACTACGATTGATCCCCT 57.223 50.000 0.00 0.00 30.99 4.79
151 152 3.897657 AGGACTACGATTGATCCCCTA 57.102 47.619 0.00 0.00 30.99 3.53
152 153 4.405756 AGGACTACGATTGATCCCCTAT 57.594 45.455 0.00 0.00 30.99 2.57
153 154 5.531753 AGGACTACGATTGATCCCCTATA 57.468 43.478 0.00 0.00 30.99 1.31
154 155 6.093617 AGGACTACGATTGATCCCCTATAT 57.906 41.667 0.00 0.00 30.99 0.86
155 156 6.503944 AGGACTACGATTGATCCCCTATATT 58.496 40.000 0.00 0.00 30.99 1.28
156 157 6.960542 AGGACTACGATTGATCCCCTATATTT 59.039 38.462 0.00 0.00 30.99 1.40
157 158 7.042335 GGACTACGATTGATCCCCTATATTTG 58.958 42.308 0.00 0.00 0.00 2.32
158 159 7.310485 GGACTACGATTGATCCCCTATATTTGT 60.310 40.741 0.00 0.00 0.00 2.83
159 160 7.386851 ACTACGATTGATCCCCTATATTTGTG 58.613 38.462 0.00 0.00 0.00 3.33
160 161 5.560724 ACGATTGATCCCCTATATTTGTGG 58.439 41.667 0.00 0.00 0.00 4.17
161 162 4.943705 CGATTGATCCCCTATATTTGTGGG 59.056 45.833 0.00 0.00 40.59 4.61
162 163 5.514834 CGATTGATCCCCTATATTTGTGGGT 60.515 44.000 0.00 0.00 39.31 4.51
163 164 4.993705 TGATCCCCTATATTTGTGGGTC 57.006 45.455 0.00 0.00 39.31 4.46
164 165 4.311613 TGATCCCCTATATTTGTGGGTCA 58.688 43.478 0.00 0.00 39.31 4.02
165 166 4.919510 TGATCCCCTATATTTGTGGGTCAT 59.080 41.667 0.00 0.00 39.31 3.06
166 167 4.993705 TCCCCTATATTTGTGGGTCATC 57.006 45.455 0.00 0.00 39.31 2.92
167 168 4.311613 TCCCCTATATTTGTGGGTCATCA 58.688 43.478 0.00 0.00 39.31 3.07
168 169 4.729370 TCCCCTATATTTGTGGGTCATCAA 59.271 41.667 0.00 0.00 39.31 2.57
169 170 4.827284 CCCCTATATTTGTGGGTCATCAAC 59.173 45.833 0.00 0.00 39.31 3.18
177 178 4.534401 GGTCATCAACCGCCTACC 57.466 61.111 0.00 0.00 38.58 3.18
178 179 1.905512 GGTCATCAACCGCCTACCT 59.094 57.895 0.00 0.00 38.58 3.08
179 180 0.462047 GGTCATCAACCGCCTACCTG 60.462 60.000 0.00 0.00 38.58 4.00
180 181 1.090052 GTCATCAACCGCCTACCTGC 61.090 60.000 0.00 0.00 0.00 4.85
181 182 1.819632 CATCAACCGCCTACCTGCC 60.820 63.158 0.00 0.00 0.00 4.85
182 183 1.995626 ATCAACCGCCTACCTGCCT 60.996 57.895 0.00 0.00 0.00 4.75
183 184 1.562672 ATCAACCGCCTACCTGCCTT 61.563 55.000 0.00 0.00 0.00 4.35
184 185 1.745489 CAACCGCCTACCTGCCTTC 60.745 63.158 0.00 0.00 0.00 3.46
185 186 2.967946 AACCGCCTACCTGCCTTCC 61.968 63.158 0.00 0.00 0.00 3.46
186 187 4.176752 CCGCCTACCTGCCTTCCC 62.177 72.222 0.00 0.00 0.00 3.97
187 188 3.399181 CGCCTACCTGCCTTCCCA 61.399 66.667 0.00 0.00 0.00 4.37
188 189 2.272471 GCCTACCTGCCTTCCCAC 59.728 66.667 0.00 0.00 0.00 4.61
189 190 2.998949 CCTACCTGCCTTCCCACC 59.001 66.667 0.00 0.00 0.00 4.61
190 191 1.616628 CCTACCTGCCTTCCCACCT 60.617 63.158 0.00 0.00 0.00 4.00
191 192 1.627297 CCTACCTGCCTTCCCACCTC 61.627 65.000 0.00 0.00 0.00 3.85
192 193 1.615424 TACCTGCCTTCCCACCTCC 60.615 63.158 0.00 0.00 0.00 4.30
193 194 3.732849 CCTGCCTTCCCACCTCCC 61.733 72.222 0.00 0.00 0.00 4.30
194 195 2.935481 CTGCCTTCCCACCTCCCA 60.935 66.667 0.00 0.00 0.00 4.37
195 196 3.256960 TGCCTTCCCACCTCCCAC 61.257 66.667 0.00 0.00 0.00 4.61
196 197 2.936032 GCCTTCCCACCTCCCACT 60.936 66.667 0.00 0.00 0.00 4.00
197 198 1.615424 GCCTTCCCACCTCCCACTA 60.615 63.158 0.00 0.00 0.00 2.74
198 199 1.911702 GCCTTCCCACCTCCCACTAC 61.912 65.000 0.00 0.00 0.00 2.73
199 200 1.272554 CCTTCCCACCTCCCACTACC 61.273 65.000 0.00 0.00 0.00 3.18
200 201 1.229723 TTCCCACCTCCCACTACCC 60.230 63.158 0.00 0.00 0.00 3.69
201 202 3.081409 CCCACCTCCCACTACCCG 61.081 72.222 0.00 0.00 0.00 5.28
202 203 3.782443 CCACCTCCCACTACCCGC 61.782 72.222 0.00 0.00 0.00 6.13
203 204 3.782443 CACCTCCCACTACCCGCC 61.782 72.222 0.00 0.00 0.00 6.13
204 205 4.326227 ACCTCCCACTACCCGCCA 62.326 66.667 0.00 0.00 0.00 5.69
205 206 3.470888 CCTCCCACTACCCGCCAG 61.471 72.222 0.00 0.00 0.00 4.85
206 207 4.162690 CTCCCACTACCCGCCAGC 62.163 72.222 0.00 0.00 0.00 4.85
209 210 4.778143 CCACTACCCGCCAGCCAC 62.778 72.222 0.00 0.00 0.00 5.01
212 213 4.814294 CTACCCGCCAGCCACGAC 62.814 72.222 0.00 0.00 0.00 4.34
216 217 4.680237 CCGCCAGCCACGACAAGA 62.680 66.667 0.00 0.00 0.00 3.02
217 218 3.414700 CGCCAGCCACGACAAGAC 61.415 66.667 0.00 0.00 0.00 3.01
218 219 3.050275 GCCAGCCACGACAAGACC 61.050 66.667 0.00 0.00 0.00 3.85
219 220 2.358737 CCAGCCACGACAAGACCC 60.359 66.667 0.00 0.00 0.00 4.46
220 221 2.738521 CAGCCACGACAAGACCCG 60.739 66.667 0.00 0.00 0.00 5.28
221 222 2.915659 AGCCACGACAAGACCCGA 60.916 61.111 0.00 0.00 0.00 5.14
222 223 2.264794 GCCACGACAAGACCCGAT 59.735 61.111 0.00 0.00 0.00 4.18
223 224 2.100631 GCCACGACAAGACCCGATG 61.101 63.158 0.00 0.00 0.00 3.84
224 225 1.447838 CCACGACAAGACCCGATGG 60.448 63.158 0.00 0.00 37.80 3.51
225 226 1.589630 CACGACAAGACCCGATGGA 59.410 57.895 0.00 0.00 34.81 3.41
226 227 0.175760 CACGACAAGACCCGATGGAT 59.824 55.000 0.00 0.00 34.81 3.41
227 228 0.175760 ACGACAAGACCCGATGGATG 59.824 55.000 0.00 0.00 34.81 3.51
228 229 0.175760 CGACAAGACCCGATGGATGT 59.824 55.000 0.00 0.00 34.81 3.06
229 230 1.802880 CGACAAGACCCGATGGATGTC 60.803 57.143 0.00 0.00 38.60 3.06
230 231 1.482593 GACAAGACCCGATGGATGTCT 59.517 52.381 0.00 0.00 40.94 3.41
232 233 2.093447 ACAAGACCCGATGGATGTCTTC 60.093 50.000 8.81 0.00 45.06 2.87
233 234 1.123928 AGACCCGATGGATGTCTTCC 58.876 55.000 0.00 0.00 45.69 3.46
234 235 0.106894 GACCCGATGGATGTCTTCCC 59.893 60.000 2.43 0.00 44.77 3.97
235 236 1.069765 CCCGATGGATGTCTTCCCG 59.930 63.158 2.43 0.34 44.77 5.14
236 237 1.399744 CCCGATGGATGTCTTCCCGA 61.400 60.000 2.43 0.00 44.77 5.14
237 238 0.249489 CCGATGGATGTCTTCCCGAC 60.249 60.000 2.43 0.00 44.77 4.79
238 239 0.249489 CGATGGATGTCTTCCCGACC 60.249 60.000 2.43 0.00 44.77 4.79
239 240 0.106894 GATGGATGTCTTCCCGACCC 59.893 60.000 2.43 0.00 44.77 4.46
240 241 1.345715 ATGGATGTCTTCCCGACCCC 61.346 60.000 2.43 0.00 44.77 4.95
241 242 2.499685 GATGTCTTCCCGACCCCG 59.500 66.667 0.00 0.00 42.13 5.73
242 243 3.735037 GATGTCTTCCCGACCCCGC 62.735 68.421 0.00 0.00 42.13 6.13
266 267 3.000819 CACCGCCACTCCACCCTA 61.001 66.667 0.00 0.00 0.00 3.53
292 293 1.913262 ATGCCACCTCCACGTCTCA 60.913 57.895 0.00 0.00 0.00 3.27
301 302 2.289072 CCTCCACGTCTCATGTTGTTCT 60.289 50.000 0.00 0.00 0.00 3.01
303 304 2.628178 TCCACGTCTCATGTTGTTCTCT 59.372 45.455 0.00 0.00 0.00 3.10
340 341 4.352607 TCCCCCAAATCGGCGCAA 62.353 61.111 10.83 0.00 0.00 4.85
362 363 4.966787 TTTGCAGCCCCACGTCCC 62.967 66.667 0.00 0.00 0.00 4.46
435 448 5.989551 TTCGGATTATGTGTGTGATGATG 57.010 39.130 0.00 0.00 0.00 3.07
455 468 7.872163 TGATGTTGCAAAGTTTGTCATATTC 57.128 32.000 16.70 11.26 0.00 1.75
468 481 9.337396 AGTTTGTCATATTCTGTACTTTTGTCA 57.663 29.630 0.00 0.00 0.00 3.58
506 520 5.147032 TGGAGGAAACAAAAATGTGGATCT 58.853 37.500 0.00 0.00 0.00 2.75
508 522 6.953520 TGGAGGAAACAAAAATGTGGATCTAT 59.046 34.615 0.00 0.00 0.00 1.98
537 567 3.775661 GGCACGCCTATTTTACACATT 57.224 42.857 0.00 0.00 0.00 2.71
538 568 4.104696 GGCACGCCTATTTTACACATTT 57.895 40.909 0.00 0.00 0.00 2.32
539 569 3.857093 GGCACGCCTATTTTACACATTTG 59.143 43.478 0.00 0.00 0.00 2.32
540 570 4.481463 GCACGCCTATTTTACACATTTGT 58.519 39.130 0.00 0.00 40.02 2.83
541 571 4.920927 GCACGCCTATTTTACACATTTGTT 59.079 37.500 0.00 0.00 37.15 2.83
542 572 5.164100 GCACGCCTATTTTACACATTTGTTG 60.164 40.000 0.00 0.00 37.15 3.33
543 573 5.344665 CACGCCTATTTTACACATTTGTTGG 59.655 40.000 0.00 0.00 37.15 3.77
544 574 5.241949 ACGCCTATTTTACACATTTGTTGGA 59.758 36.000 0.00 0.00 37.15 3.53
545 575 5.799936 CGCCTATTTTACACATTTGTTGGAG 59.200 40.000 0.00 0.00 37.15 3.86
546 576 5.576774 GCCTATTTTACACATTTGTTGGAGC 59.423 40.000 0.00 0.00 37.15 4.70
547 577 5.799936 CCTATTTTACACATTTGTTGGAGCG 59.200 40.000 0.00 0.00 37.15 5.03
548 578 3.634568 TTTACACATTTGTTGGAGCGG 57.365 42.857 0.00 0.00 37.15 5.52
549 579 0.878416 TACACATTTGTTGGAGCGGC 59.122 50.000 0.00 0.00 37.15 6.53
550 580 1.106351 ACACATTTGTTGGAGCGGCA 61.106 50.000 1.45 0.00 28.43 5.69
551 581 0.387622 CACATTTGTTGGAGCGGCAG 60.388 55.000 1.45 0.00 0.00 4.85
552 582 1.444895 CATTTGTTGGAGCGGCAGC 60.445 57.895 0.00 0.00 45.58 5.25
553 583 2.639327 ATTTGTTGGAGCGGCAGCC 61.639 57.895 4.82 0.00 46.67 4.85
566 596 3.813596 CAGCCGTGCAACTATCCC 58.186 61.111 0.00 0.00 31.75 3.85
567 597 1.078497 CAGCCGTGCAACTATCCCA 60.078 57.895 0.00 0.00 31.75 4.37
568 598 0.464373 CAGCCGTGCAACTATCCCAT 60.464 55.000 0.00 0.00 31.75 4.00
569 599 0.255890 AGCCGTGCAACTATCCCATT 59.744 50.000 0.00 0.00 31.75 3.16
570 600 1.102978 GCCGTGCAACTATCCCATTT 58.897 50.000 0.00 0.00 31.75 2.32
571 601 1.476488 GCCGTGCAACTATCCCATTTT 59.524 47.619 0.00 0.00 31.75 1.82
572 602 2.685897 GCCGTGCAACTATCCCATTTTA 59.314 45.455 0.00 0.00 31.75 1.52
573 603 3.488553 GCCGTGCAACTATCCCATTTTAC 60.489 47.826 0.00 0.00 31.75 2.01
574 604 3.692101 CCGTGCAACTATCCCATTTTACA 59.308 43.478 0.00 0.00 31.75 2.41
575 605 4.338118 CCGTGCAACTATCCCATTTTACAT 59.662 41.667 0.00 0.00 31.75 2.29
576 606 5.505654 CCGTGCAACTATCCCATTTTACATC 60.506 44.000 0.00 0.00 31.75 3.06
577 607 5.065859 CGTGCAACTATCCCATTTTACATCA 59.934 40.000 0.00 0.00 31.75 3.07
581 611 7.123997 TGCAACTATCCCATTTTACATCATGTT 59.876 33.333 0.00 0.00 0.00 2.71
590 620 6.071447 CCATTTTACATCATGTTGGAGTTGGA 60.071 38.462 0.00 0.00 28.46 3.53
592 622 8.685427 CATTTTACATCATGTTGGAGTTGGATA 58.315 33.333 0.00 0.00 0.00 2.59
599 629 6.720309 TCATGTTGGAGTTGGATATTTCTGA 58.280 36.000 0.00 0.00 0.00 3.27
604 634 7.283807 TGTTGGAGTTGGATATTTCTGATGATG 59.716 37.037 0.00 0.00 0.00 3.07
605 635 6.903516 TGGAGTTGGATATTTCTGATGATGT 58.096 36.000 0.00 0.00 0.00 3.06
606 636 8.033178 TGGAGTTGGATATTTCTGATGATGTA 57.967 34.615 0.00 0.00 0.00 2.29
713 746 9.218359 CTTCAATCACAATTTAATGATGTCTCG 57.782 33.333 0.00 0.00 35.71 4.04
714 747 7.188834 TCAATCACAATTTAATGATGTCTCGC 58.811 34.615 0.00 0.00 35.71 5.03
715 748 5.484173 TCACAATTTAATGATGTCTCGCC 57.516 39.130 0.00 0.00 0.00 5.54
716 749 4.033932 TCACAATTTAATGATGTCTCGCCG 59.966 41.667 0.00 0.00 0.00 6.46
717 750 3.242739 ACAATTTAATGATGTCTCGCCGC 60.243 43.478 0.00 0.00 0.00 6.53
718 751 2.017138 TTTAATGATGTCTCGCCGCA 57.983 45.000 0.00 0.00 0.00 5.69
719 752 2.017138 TTAATGATGTCTCGCCGCAA 57.983 45.000 0.00 0.00 0.00 4.85
720 753 2.017138 TAATGATGTCTCGCCGCAAA 57.983 45.000 0.00 0.00 0.00 3.68
721 754 1.164411 AATGATGTCTCGCCGCAAAA 58.836 45.000 0.00 0.00 0.00 2.44
722 755 1.164411 ATGATGTCTCGCCGCAAAAA 58.836 45.000 0.00 0.00 0.00 1.94
866 905 0.387929 TTCGACTTCCACTTGACGCT 59.612 50.000 0.00 0.00 0.00 5.07
869 908 1.070577 CGACTTCCACTTGACGCTTTG 60.071 52.381 0.00 0.00 0.00 2.77
1137 1186 1.860078 CGTCTTCTTCACCAACGCC 59.140 57.895 0.00 0.00 0.00 5.68
1371 1420 3.267860 GCGCGCAAGATGGAGGAG 61.268 66.667 29.10 0.00 43.02 3.69
1675 1724 3.075005 GCGGGGAGTCTGCCACTA 61.075 66.667 13.05 0.00 41.83 2.74
1808 1857 2.612221 CCTCCGTCTTTGACTAACCACC 60.612 54.545 0.00 0.00 0.00 4.61
1853 1910 9.477484 GATATGTTCGACAACTTCAATAGGTAT 57.523 33.333 0.00 0.00 33.17 2.73
1873 1930 2.381725 AGTTGCGAACTTAGGCTACC 57.618 50.000 0.00 0.00 39.04 3.18
1947 2004 5.977129 GGATTTGTAAGGTTTATGCGGATTG 59.023 40.000 0.00 0.00 0.00 2.67
1996 2053 5.223382 CGAATACCTATGTCTGATCCACAC 58.777 45.833 0.00 0.00 0.00 3.82
2004 2061 2.565391 TGTCTGATCCACACGGTAACAT 59.435 45.455 0.00 0.00 0.00 2.71
2012 2070 2.484770 CCACACGGTAACATATGAGGGG 60.485 54.545 10.38 0.00 0.00 4.79
2066 2125 5.734720 TCTACTCAATTTGCCACTAGAAGG 58.265 41.667 0.00 0.00 0.00 3.46
2178 2240 2.486592 GGGGTGAAGTGACCAAAATACG 59.513 50.000 0.00 0.00 37.80 3.06
2382 2459 2.158943 CCTAGAAGTTTTAGGGGAGCGG 60.159 54.545 10.98 0.00 35.13 5.52
2616 2713 7.144722 TGCATAGTTTGTAACTTCATCCAAG 57.855 36.000 0.00 0.00 42.81 3.61
2679 2776 8.807948 AATAAGCTTGTGTTATTAGTGGTCAT 57.192 30.769 9.86 0.00 30.00 3.06
2744 2841 7.158697 GGGCATATGTATACACACTACAATCA 58.841 38.462 7.96 0.00 37.54 2.57
2759 2856 8.028938 ACACTACAATCAGAAATTGTATTTGCC 58.971 33.333 10.17 0.00 41.78 4.52
2780 2877 2.159476 CGTCATTTTCAGCATGGACAGG 60.159 50.000 0.00 0.00 36.16 4.00
2842 2939 7.611467 TGCTTACCTGATTGATCATTTTGTAGT 59.389 33.333 0.00 0.00 36.02 2.73
3226 3324 1.402787 CTCTCTCTTCTGGCCTCCTC 58.597 60.000 3.32 0.00 0.00 3.71
3227 3325 1.006813 TCTCTCTTCTGGCCTCCTCT 58.993 55.000 3.32 0.00 0.00 3.69
3252 3350 5.066117 CACCTTGTCAATGATGGAGATTCAG 59.934 44.000 6.84 0.00 0.00 3.02
3315 3413 0.618458 GGCCTCCTGTATTGACACCA 59.382 55.000 0.00 0.00 0.00 4.17
3481 3581 6.084326 TCCTTTCTGGTGCTTAATTTGTTC 57.916 37.500 0.00 0.00 37.07 3.18
3572 3672 1.082879 AGGATGGGAGGGGAAGAGAAA 59.917 52.381 0.00 0.00 0.00 2.52
3606 3706 5.132502 TGGGGCATTGATTAGTAGATTGTG 58.867 41.667 0.00 0.00 0.00 3.33
3681 3781 9.485206 GAAATATAAGGGCGTTTAGATCACTAA 57.515 33.333 0.00 0.00 36.90 2.24
3724 4417 4.271049 CAGCGGGAGTAGATTGTAATTGTG 59.729 45.833 0.00 0.00 0.00 3.33
3924 4617 4.067972 TGATCCCACTTTATTCCGTAGC 57.932 45.455 0.00 0.00 0.00 3.58
4163 4856 5.894298 ACTATAGTTCATCCCAGATTGCA 57.106 39.130 0.00 0.00 0.00 4.08
4218 4911 4.214758 ACGTATACTTTGACAAAACTGGCC 59.785 41.667 0.00 0.00 0.00 5.36
4258 4984 3.081061 TGTAAAGAATGTCGCATGGCTT 58.919 40.909 0.00 0.00 0.00 4.35
4286 5012 7.839200 ACATAAGTGCATTTCCCTAAATACCTT 59.161 33.333 0.00 0.00 33.45 3.50
4306 5032 4.641989 CCTTGGCACTAGTTGAGCATATTT 59.358 41.667 6.08 0.00 33.86 1.40
4426 5152 9.073475 TGCTACCATTTTTCTATAACAACAAGT 57.927 29.630 0.00 0.00 0.00 3.16
4469 5195 5.183713 TCTGTTTCCTTGTGAATTATGGCAG 59.816 40.000 0.00 0.00 31.67 4.85
4470 5196 4.176271 GTTTCCTTGTGAATTATGGCAGC 58.824 43.478 0.00 0.00 31.67 5.25
4500 5227 8.196771 ACTGAAAATGCACTTGAATTTCACTAA 58.803 29.630 0.00 0.00 32.24 2.24
4741 5468 6.457122 GCTTTAGGGTAAATTTTCGCTCTCTC 60.457 42.308 15.96 3.93 0.00 3.20
4758 5485 0.861837 CTCGGGAGTAATTCGCATGC 59.138 55.000 7.91 7.91 38.60 4.06
4846 5573 4.083484 CGTTTTAACCTGTCATCCTTGTCC 60.083 45.833 0.00 0.00 0.00 4.02
4909 5636 6.479660 CACAAAAGTTTGCAAGGACACATATT 59.520 34.615 0.00 0.00 41.79 1.28
5032 5759 9.659830 GAGTGAACAAATACACTAAAATTCGTT 57.340 29.630 0.00 0.00 45.54 3.85
5065 5792 7.875316 TCTGAATCAGAAAAGAGTTAGAACG 57.125 36.000 10.99 0.00 37.57 3.95
5101 5828 9.349713 TGTTTATGGAGAGAGTACATTTTGTTT 57.650 29.630 0.00 0.00 0.00 2.83
5166 5893 5.364157 ACAAACCAGATGTCCTATCTCTACC 59.636 44.000 0.00 0.00 0.00 3.18
5260 5992 7.290248 TCCTATCACTAAGAAAGAAGTATGGGG 59.710 40.741 0.00 0.00 0.00 4.96
5321 6053 0.664761 CATGTGGATTGCTTAGCCCG 59.335 55.000 0.29 0.00 0.00 6.13
5359 6091 0.451783 GCCCACATGGTCGTTTCATC 59.548 55.000 0.00 0.00 36.04 2.92
5381 6113 1.098050 CCAAGGCTCTGGAAAATCCG 58.902 55.000 9.32 0.00 40.17 4.18
5389 6121 0.328258 CTGGAAAATCCGAGGTGGGT 59.672 55.000 0.00 0.00 40.17 4.51
5396 6128 2.880629 ATCCGAGGTGGGTCTGGAGG 62.881 65.000 0.00 0.00 38.76 4.30
5399 6131 1.229209 GAGGTGGGTCTGGAGGACA 60.229 63.158 0.00 0.00 46.16 4.02
5409 6141 6.270231 GTGGGTCTGGAGGACATTATATACTT 59.730 42.308 0.00 0.00 46.16 2.24
5410 6142 7.453752 GTGGGTCTGGAGGACATTATATACTTA 59.546 40.741 0.00 0.00 46.16 2.24
5435 6426 4.714632 AGGTTGAAATCGAGGTTGAAGAA 58.285 39.130 0.00 0.00 0.00 2.52
5445 6436 0.467290 GGTTGAAGAACCCAGTGGCA 60.467 55.000 2.61 0.00 45.48 4.92
5483 6474 8.308851 ACTACCTCTAAAGAATCCTAACCTTC 57.691 38.462 0.00 0.00 0.00 3.46
5518 6509 7.716998 GTGGATGTGTTTCATAAGGTCATATCT 59.283 37.037 0.00 0.00 36.83 1.98
5537 6528 2.183679 CTCTGACTTAGCTCCCTTGGT 58.816 52.381 0.00 0.00 0.00 3.67
5557 6548 1.673337 GTTCGTTTTCCCCTCCCCG 60.673 63.158 0.00 0.00 0.00 5.73
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
6 7 9.686683 AGATAGTTTGATAGCAAGGTAATTTGT 57.313 29.630 0.00 0.00 35.04 2.83
7 8 9.941664 CAGATAGTTTGATAGCAAGGTAATTTG 57.058 33.333 0.00 0.00 35.04 2.32
8 9 9.686683 ACAGATAGTTTGATAGCAAGGTAATTT 57.313 29.630 0.00 0.00 35.04 1.82
9 10 9.686683 AACAGATAGTTTGATAGCAAGGTAATT 57.313 29.630 0.00 0.00 37.03 1.40
12 13 9.982651 GATAACAGATAGTTTGATAGCAAGGTA 57.017 33.333 0.00 0.00 41.64 3.08
13 14 7.653713 CGATAACAGATAGTTTGATAGCAAGGT 59.346 37.037 0.00 0.00 41.64 3.50
14 15 7.867909 TCGATAACAGATAGTTTGATAGCAAGG 59.132 37.037 0.00 0.00 41.64 3.61
15 16 8.803201 TCGATAACAGATAGTTTGATAGCAAG 57.197 34.615 0.00 0.00 41.64 4.01
30 31 8.335356 GCAAGCACTAAAATTATCGATAACAGA 58.665 33.333 19.73 5.54 0.00 3.41
31 32 8.122330 TGCAAGCACTAAAATTATCGATAACAG 58.878 33.333 19.73 15.45 0.00 3.16
32 33 7.980062 TGCAAGCACTAAAATTATCGATAACA 58.020 30.769 19.73 6.15 0.00 2.41
33 34 8.335356 TCTGCAAGCACTAAAATTATCGATAAC 58.665 33.333 19.73 5.17 0.00 1.89
34 35 8.335356 GTCTGCAAGCACTAAAATTATCGATAA 58.665 33.333 19.63 19.63 0.00 1.75
35 36 7.494298 TGTCTGCAAGCACTAAAATTATCGATA 59.506 33.333 0.00 0.00 0.00 2.92
36 37 6.316140 TGTCTGCAAGCACTAAAATTATCGAT 59.684 34.615 2.16 2.16 0.00 3.59
37 38 5.641636 TGTCTGCAAGCACTAAAATTATCGA 59.358 36.000 0.00 0.00 0.00 3.59
38 39 5.868257 TGTCTGCAAGCACTAAAATTATCG 58.132 37.500 0.00 0.00 0.00 2.92
39 40 9.787532 TTATTGTCTGCAAGCACTAAAATTATC 57.212 29.630 0.00 0.00 38.10 1.75
40 41 9.573133 GTTATTGTCTGCAAGCACTAAAATTAT 57.427 29.630 0.00 0.00 38.10 1.28
41 42 8.792633 AGTTATTGTCTGCAAGCACTAAAATTA 58.207 29.630 0.00 0.00 38.10 1.40
42 43 7.661040 AGTTATTGTCTGCAAGCACTAAAATT 58.339 30.769 0.00 0.00 38.10 1.82
43 44 7.219484 AGTTATTGTCTGCAAGCACTAAAAT 57.781 32.000 0.00 0.00 38.10 1.82
44 45 6.633500 AGTTATTGTCTGCAAGCACTAAAA 57.367 33.333 0.00 0.00 38.10 1.52
45 46 6.633500 AAGTTATTGTCTGCAAGCACTAAA 57.367 33.333 0.00 0.00 38.10 1.85
46 47 7.921786 ATAAGTTATTGTCTGCAAGCACTAA 57.078 32.000 0.00 0.00 38.10 2.24
47 48 7.606073 TCAATAAGTTATTGTCTGCAAGCACTA 59.394 33.333 27.04 7.74 44.49 2.74
48 49 6.430925 TCAATAAGTTATTGTCTGCAAGCACT 59.569 34.615 27.04 0.00 44.49 4.40
49 50 6.611381 TCAATAAGTTATTGTCTGCAAGCAC 58.389 36.000 27.04 0.00 44.49 4.40
50 51 6.816134 TCAATAAGTTATTGTCTGCAAGCA 57.184 33.333 27.04 8.91 44.49 3.91
51 52 8.427774 GTTTTCAATAAGTTATTGTCTGCAAGC 58.572 33.333 27.04 15.06 44.49 4.01
52 53 9.683069 AGTTTTCAATAAGTTATTGTCTGCAAG 57.317 29.630 27.04 7.10 44.49 4.01
53 54 9.462174 CAGTTTTCAATAAGTTATTGTCTGCAA 57.538 29.630 27.04 15.50 44.49 4.08
54 55 7.594758 GCAGTTTTCAATAAGTTATTGTCTGCA 59.405 33.333 33.77 20.26 44.20 4.41
55 56 7.809806 AGCAGTTTTCAATAAGTTATTGTCTGC 59.190 33.333 33.04 33.04 44.49 4.26
56 57 9.683069 AAGCAGTTTTCAATAAGTTATTGTCTG 57.317 29.630 27.04 26.14 44.49 3.51
70 71 9.467258 CAGAAGAAAATGATAAGCAGTTTTCAA 57.533 29.630 10.78 0.00 44.02 2.69
71 72 7.596248 GCAGAAGAAAATGATAAGCAGTTTTCA 59.404 33.333 10.78 0.00 44.02 2.69
72 73 7.811713 AGCAGAAGAAAATGATAAGCAGTTTTC 59.188 33.333 0.00 0.00 44.02 2.29
73 74 7.664758 AGCAGAAGAAAATGATAAGCAGTTTT 58.335 30.769 0.00 0.00 44.02 2.43
74 75 7.224522 AGCAGAAGAAAATGATAAGCAGTTT 57.775 32.000 0.00 0.00 46.36 2.66
75 76 6.127786 GGAGCAGAAGAAAATGATAAGCAGTT 60.128 38.462 0.00 0.00 36.14 3.16
76 77 5.356470 GGAGCAGAAGAAAATGATAAGCAGT 59.644 40.000 0.00 0.00 0.00 4.40
77 78 5.589452 AGGAGCAGAAGAAAATGATAAGCAG 59.411 40.000 0.00 0.00 0.00 4.24
78 79 5.503927 AGGAGCAGAAGAAAATGATAAGCA 58.496 37.500 0.00 0.00 0.00 3.91
79 80 5.277250 CGAGGAGCAGAAGAAAATGATAAGC 60.277 44.000 0.00 0.00 0.00 3.09
80 81 5.814705 ACGAGGAGCAGAAGAAAATGATAAG 59.185 40.000 0.00 0.00 0.00 1.73
81 82 5.734720 ACGAGGAGCAGAAGAAAATGATAA 58.265 37.500 0.00 0.00 0.00 1.75
82 83 5.344743 ACGAGGAGCAGAAGAAAATGATA 57.655 39.130 0.00 0.00 0.00 2.15
83 84 4.213564 ACGAGGAGCAGAAGAAAATGAT 57.786 40.909 0.00 0.00 0.00 2.45
84 85 3.685139 ACGAGGAGCAGAAGAAAATGA 57.315 42.857 0.00 0.00 0.00 2.57
85 86 3.120060 CCAACGAGGAGCAGAAGAAAATG 60.120 47.826 0.00 0.00 41.22 2.32
86 87 3.077359 CCAACGAGGAGCAGAAGAAAAT 58.923 45.455 0.00 0.00 41.22 1.82
87 88 2.494059 CCAACGAGGAGCAGAAGAAAA 58.506 47.619 0.00 0.00 41.22 2.29
88 89 1.270839 CCCAACGAGGAGCAGAAGAAA 60.271 52.381 0.00 0.00 41.22 2.52
89 90 0.321671 CCCAACGAGGAGCAGAAGAA 59.678 55.000 0.00 0.00 41.22 2.52
90 91 0.832135 ACCCAACGAGGAGCAGAAGA 60.832 55.000 0.00 0.00 41.22 2.87
91 92 0.035458 AACCCAACGAGGAGCAGAAG 59.965 55.000 0.00 0.00 41.22 2.85
92 93 0.034896 GAACCCAACGAGGAGCAGAA 59.965 55.000 0.00 0.00 41.22 3.02
93 94 1.671742 GAACCCAACGAGGAGCAGA 59.328 57.895 0.00 0.00 41.22 4.26
94 95 1.738099 CGAACCCAACGAGGAGCAG 60.738 63.158 0.00 0.00 41.22 4.24
95 96 2.204461 TCGAACCCAACGAGGAGCA 61.204 57.895 0.00 0.00 41.22 4.26
96 97 1.737008 GTCGAACCCAACGAGGAGC 60.737 63.158 0.00 0.00 41.22 4.70
97 98 0.666577 GTGTCGAACCCAACGAGGAG 60.667 60.000 0.00 0.00 41.22 3.69
98 99 1.111116 AGTGTCGAACCCAACGAGGA 61.111 55.000 0.00 0.00 41.22 3.71
99 100 0.666577 GAGTGTCGAACCCAACGAGG 60.667 60.000 0.00 0.00 40.37 4.63
100 101 0.314302 AGAGTGTCGAACCCAACGAG 59.686 55.000 0.00 0.00 40.37 4.18
101 102 0.748450 AAGAGTGTCGAACCCAACGA 59.252 50.000 0.00 0.00 37.43 3.85
102 103 2.056577 GTAAGAGTGTCGAACCCAACG 58.943 52.381 0.00 0.00 0.00 4.10
103 104 3.382048 AGTAAGAGTGTCGAACCCAAC 57.618 47.619 0.00 0.00 0.00 3.77
104 105 5.244402 TGATAAGTAAGAGTGTCGAACCCAA 59.756 40.000 0.00 0.00 0.00 4.12
105 106 4.768448 TGATAAGTAAGAGTGTCGAACCCA 59.232 41.667 0.00 0.00 0.00 4.51
106 107 5.320549 TGATAAGTAAGAGTGTCGAACCC 57.679 43.478 0.00 0.00 0.00 4.11
107 108 7.148623 CCTTTTGATAAGTAAGAGTGTCGAACC 60.149 40.741 0.00 0.00 0.00 3.62
108 109 7.597743 TCCTTTTGATAAGTAAGAGTGTCGAAC 59.402 37.037 0.00 0.00 0.00 3.95
109 110 7.597743 GTCCTTTTGATAAGTAAGAGTGTCGAA 59.402 37.037 0.00 0.00 0.00 3.71
110 111 7.039923 AGTCCTTTTGATAAGTAAGAGTGTCGA 60.040 37.037 0.00 0.00 0.00 4.20
111 112 7.091443 AGTCCTTTTGATAAGTAAGAGTGTCG 58.909 38.462 0.00 0.00 0.00 4.35
112 113 9.356433 GTAGTCCTTTTGATAAGTAAGAGTGTC 57.644 37.037 0.00 0.00 0.00 3.67
113 114 8.027771 CGTAGTCCTTTTGATAAGTAAGAGTGT 58.972 37.037 0.00 0.00 0.00 3.55
114 115 8.242053 TCGTAGTCCTTTTGATAAGTAAGAGTG 58.758 37.037 0.00 0.00 0.00 3.51
115 116 8.345724 TCGTAGTCCTTTTGATAAGTAAGAGT 57.654 34.615 0.00 0.00 0.00 3.24
116 117 9.804758 AATCGTAGTCCTTTTGATAAGTAAGAG 57.195 33.333 0.00 0.00 0.00 2.85
117 118 9.582431 CAATCGTAGTCCTTTTGATAAGTAAGA 57.418 33.333 0.00 0.00 0.00 2.10
118 119 9.582431 TCAATCGTAGTCCTTTTGATAAGTAAG 57.418 33.333 0.00 0.00 0.00 2.34
120 121 9.745880 GATCAATCGTAGTCCTTTTGATAAGTA 57.254 33.333 0.00 0.00 37.20 2.24
121 122 7.711339 GGATCAATCGTAGTCCTTTTGATAAGT 59.289 37.037 0.00 0.00 37.20 2.24
122 123 7.171678 GGGATCAATCGTAGTCCTTTTGATAAG 59.828 40.741 0.00 0.00 37.20 1.73
123 124 6.990349 GGGATCAATCGTAGTCCTTTTGATAA 59.010 38.462 0.00 0.00 37.20 1.75
124 125 6.463897 GGGGATCAATCGTAGTCCTTTTGATA 60.464 42.308 0.00 0.00 37.20 2.15
125 126 5.368989 GGGATCAATCGTAGTCCTTTTGAT 58.631 41.667 0.00 0.00 39.15 2.57
126 127 4.383770 GGGGATCAATCGTAGTCCTTTTGA 60.384 45.833 0.00 0.00 0.00 2.69
127 128 3.877508 GGGGATCAATCGTAGTCCTTTTG 59.122 47.826 0.00 0.00 0.00 2.44
128 129 3.780850 AGGGGATCAATCGTAGTCCTTTT 59.219 43.478 0.00 0.00 0.00 2.27
129 130 3.385115 AGGGGATCAATCGTAGTCCTTT 58.615 45.455 0.00 0.00 0.00 3.11
130 131 3.047695 AGGGGATCAATCGTAGTCCTT 57.952 47.619 0.00 0.00 0.00 3.36
131 132 2.777459 AGGGGATCAATCGTAGTCCT 57.223 50.000 0.00 0.00 0.00 3.85
132 133 6.793505 AATATAGGGGATCAATCGTAGTCC 57.206 41.667 0.00 0.00 0.00 3.85
133 134 7.545965 CACAAATATAGGGGATCAATCGTAGTC 59.454 40.741 0.00 0.00 0.00 2.59
134 135 7.386851 CACAAATATAGGGGATCAATCGTAGT 58.613 38.462 0.00 0.00 0.00 2.73
135 136 6.818644 CCACAAATATAGGGGATCAATCGTAG 59.181 42.308 0.00 0.00 0.00 3.51
136 137 6.296202 CCCACAAATATAGGGGATCAATCGTA 60.296 42.308 0.00 0.00 43.57 3.43
137 138 5.514834 CCCACAAATATAGGGGATCAATCGT 60.515 44.000 0.00 0.00 43.57 3.73
138 139 4.943705 CCCACAAATATAGGGGATCAATCG 59.056 45.833 0.00 0.00 43.57 3.34
147 148 6.489439 CGGTTGATGACCCACAAATATAGGG 61.489 48.000 0.00 0.00 46.35 3.53
148 149 4.515191 CGGTTGATGACCCACAAATATAGG 59.485 45.833 0.00 0.00 46.35 2.57
149 150 4.024048 GCGGTTGATGACCCACAAATATAG 60.024 45.833 0.00 0.00 46.35 1.31
150 151 3.880490 GCGGTTGATGACCCACAAATATA 59.120 43.478 0.00 0.00 46.35 0.86
151 152 2.687935 GCGGTTGATGACCCACAAATAT 59.312 45.455 0.00 0.00 46.35 1.28
152 153 2.088423 GCGGTTGATGACCCACAAATA 58.912 47.619 0.00 0.00 46.35 1.40
153 154 0.887933 GCGGTTGATGACCCACAAAT 59.112 50.000 0.00 0.00 46.35 2.32
154 155 1.175983 GGCGGTTGATGACCCACAAA 61.176 55.000 0.00 0.00 46.35 2.83
155 156 1.602323 GGCGGTTGATGACCCACAA 60.602 57.895 0.00 0.00 46.35 3.33
156 157 1.195442 TAGGCGGTTGATGACCCACA 61.195 55.000 0.00 0.00 46.35 4.17
157 158 0.743345 GTAGGCGGTTGATGACCCAC 60.743 60.000 0.00 0.00 46.35 4.61
158 159 1.600107 GTAGGCGGTTGATGACCCA 59.400 57.895 0.00 0.00 46.35 4.51
159 160 1.153229 GGTAGGCGGTTGATGACCC 60.153 63.158 0.00 0.00 46.35 4.46
160 161 0.462047 CAGGTAGGCGGTTGATGACC 60.462 60.000 0.00 0.00 45.55 4.02
161 162 1.090052 GCAGGTAGGCGGTTGATGAC 61.090 60.000 0.00 0.00 0.00 3.06
162 163 1.220749 GCAGGTAGGCGGTTGATGA 59.779 57.895 0.00 0.00 0.00 2.92
163 164 1.819632 GGCAGGTAGGCGGTTGATG 60.820 63.158 0.00 0.00 33.57 3.07
164 165 2.590092 GGCAGGTAGGCGGTTGAT 59.410 61.111 0.00 0.00 33.57 2.57
171 172 2.272471 GTGGGAAGGCAGGTAGGC 59.728 66.667 0.00 0.00 44.61 3.93
172 173 1.616628 AGGTGGGAAGGCAGGTAGG 60.617 63.158 0.00 0.00 0.00 3.18
173 174 1.627297 GGAGGTGGGAAGGCAGGTAG 61.627 65.000 0.00 0.00 0.00 3.18
174 175 1.615424 GGAGGTGGGAAGGCAGGTA 60.615 63.158 0.00 0.00 0.00 3.08
175 176 2.936032 GGAGGTGGGAAGGCAGGT 60.936 66.667 0.00 0.00 0.00 4.00
176 177 3.732849 GGGAGGTGGGAAGGCAGG 61.733 72.222 0.00 0.00 0.00 4.85
177 178 2.935481 TGGGAGGTGGGAAGGCAG 60.935 66.667 0.00 0.00 0.00 4.85
178 179 2.409984 TAGTGGGAGGTGGGAAGGCA 62.410 60.000 0.00 0.00 0.00 4.75
179 180 1.615424 TAGTGGGAGGTGGGAAGGC 60.615 63.158 0.00 0.00 0.00 4.35
180 181 1.272554 GGTAGTGGGAGGTGGGAAGG 61.273 65.000 0.00 0.00 0.00 3.46
181 182 1.272554 GGGTAGTGGGAGGTGGGAAG 61.273 65.000 0.00 0.00 0.00 3.46
182 183 1.229723 GGGTAGTGGGAGGTGGGAA 60.230 63.158 0.00 0.00 0.00 3.97
183 184 2.453054 GGGTAGTGGGAGGTGGGA 59.547 66.667 0.00 0.00 0.00 4.37
184 185 3.081409 CGGGTAGTGGGAGGTGGG 61.081 72.222 0.00 0.00 0.00 4.61
185 186 3.782443 GCGGGTAGTGGGAGGTGG 61.782 72.222 0.00 0.00 0.00 4.61
186 187 3.782443 GGCGGGTAGTGGGAGGTG 61.782 72.222 0.00 0.00 0.00 4.00
187 188 4.326227 TGGCGGGTAGTGGGAGGT 62.326 66.667 0.00 0.00 0.00 3.85
188 189 3.470888 CTGGCGGGTAGTGGGAGG 61.471 72.222 0.00 0.00 0.00 4.30
189 190 4.162690 GCTGGCGGGTAGTGGGAG 62.163 72.222 0.00 0.00 0.00 4.30
192 193 4.778143 GTGGCTGGCGGGTAGTGG 62.778 72.222 0.00 0.00 0.00 4.00
195 196 4.814294 GTCGTGGCTGGCGGGTAG 62.814 72.222 0.00 0.00 0.00 3.18
199 200 4.680237 TCTTGTCGTGGCTGGCGG 62.680 66.667 0.00 0.00 0.00 6.13
200 201 3.414700 GTCTTGTCGTGGCTGGCG 61.415 66.667 0.00 0.00 0.00 5.69
201 202 3.050275 GGTCTTGTCGTGGCTGGC 61.050 66.667 0.00 0.00 0.00 4.85
202 203 2.358737 GGGTCTTGTCGTGGCTGG 60.359 66.667 0.00 0.00 0.00 4.85
203 204 2.507110 ATCGGGTCTTGTCGTGGCTG 62.507 60.000 0.00 0.00 0.00 4.85
204 205 2.283529 ATCGGGTCTTGTCGTGGCT 61.284 57.895 0.00 0.00 0.00 4.75
205 206 2.100631 CATCGGGTCTTGTCGTGGC 61.101 63.158 0.00 0.00 0.00 5.01
206 207 1.447838 CCATCGGGTCTTGTCGTGG 60.448 63.158 0.00 0.00 0.00 4.94
207 208 0.175760 ATCCATCGGGTCTTGTCGTG 59.824 55.000 0.00 0.00 34.93 4.35
208 209 0.175760 CATCCATCGGGTCTTGTCGT 59.824 55.000 0.00 0.00 34.93 4.34
209 210 0.175760 ACATCCATCGGGTCTTGTCG 59.824 55.000 0.00 0.00 34.93 4.35
210 211 1.482593 AGACATCCATCGGGTCTTGTC 59.517 52.381 0.00 0.00 38.69 3.18
211 212 1.573108 AGACATCCATCGGGTCTTGT 58.427 50.000 0.00 0.00 38.69 3.16
212 213 2.698855 AAGACATCCATCGGGTCTTG 57.301 50.000 5.55 0.00 46.81 3.02
249 250 2.311688 GATAGGGTGGAGTGGCGGTG 62.312 65.000 0.00 0.00 0.00 4.94
250 251 2.040606 ATAGGGTGGAGTGGCGGT 59.959 61.111 0.00 0.00 0.00 5.68
251 252 1.338136 AAGATAGGGTGGAGTGGCGG 61.338 60.000 0.00 0.00 0.00 6.13
252 253 1.068741 GTAAGATAGGGTGGAGTGGCG 59.931 57.143 0.00 0.00 0.00 5.69
253 254 1.416772 GGTAAGATAGGGTGGAGTGGC 59.583 57.143 0.00 0.00 0.00 5.01
254 255 2.759355 TGGTAAGATAGGGTGGAGTGG 58.241 52.381 0.00 0.00 0.00 4.00
255 256 3.495100 GCATGGTAAGATAGGGTGGAGTG 60.495 52.174 0.00 0.00 0.00 3.51
256 257 2.706190 GCATGGTAAGATAGGGTGGAGT 59.294 50.000 0.00 0.00 0.00 3.85
257 258 2.039084 GGCATGGTAAGATAGGGTGGAG 59.961 54.545 0.00 0.00 0.00 3.86
258 259 2.054799 GGCATGGTAAGATAGGGTGGA 58.945 52.381 0.00 0.00 0.00 4.02
259 260 1.774254 TGGCATGGTAAGATAGGGTGG 59.226 52.381 0.00 0.00 0.00 4.61
260 261 2.487265 GGTGGCATGGTAAGATAGGGTG 60.487 54.545 0.00 0.00 0.00 4.61
261 262 1.774856 GGTGGCATGGTAAGATAGGGT 59.225 52.381 0.00 0.00 0.00 4.34
262 263 2.039084 GAGGTGGCATGGTAAGATAGGG 59.961 54.545 0.00 0.00 0.00 3.53
263 264 2.039084 GGAGGTGGCATGGTAAGATAGG 59.961 54.545 0.00 0.00 0.00 2.57
264 265 2.705658 TGGAGGTGGCATGGTAAGATAG 59.294 50.000 0.00 0.00 0.00 2.08
265 266 2.438021 GTGGAGGTGGCATGGTAAGATA 59.562 50.000 0.00 0.00 0.00 1.98
266 267 1.212935 GTGGAGGTGGCATGGTAAGAT 59.787 52.381 0.00 0.00 0.00 2.40
292 293 0.321653 GGCGGTGGAGAGAACAACAT 60.322 55.000 0.00 0.00 0.00 2.71
340 341 2.676471 GTGGGGCTGCAAATCCGT 60.676 61.111 0.50 0.00 0.00 4.69
369 370 2.115291 GCTCTTCCATTCCGGTGGC 61.115 63.158 6.22 0.00 39.19 5.01
435 448 8.076178 AGTACAGAATATGACAAACTTTGCAAC 58.924 33.333 0.00 0.00 0.00 4.17
455 468 8.969121 TGCATATGAATTTGACAAAAGTACAG 57.031 30.769 6.97 0.00 0.00 2.74
467 480 7.549842 TGTTTCCTCCAAATGCATATGAATTTG 59.450 33.333 30.82 30.82 46.06 2.32
468 481 7.622713 TGTTTCCTCCAAATGCATATGAATTT 58.377 30.769 14.96 14.96 33.64 1.82
521 551 5.704888 TCCAACAAATGTGTAAAATAGGCG 58.295 37.500 0.00 0.00 36.80 5.52
522 552 5.576774 GCTCCAACAAATGTGTAAAATAGGC 59.423 40.000 0.00 0.00 36.80 3.93
523 553 5.799936 CGCTCCAACAAATGTGTAAAATAGG 59.200 40.000 0.00 0.00 36.80 2.57
524 554 5.799936 CCGCTCCAACAAATGTGTAAAATAG 59.200 40.000 0.00 0.00 36.80 1.73
525 555 5.704888 CCGCTCCAACAAATGTGTAAAATA 58.295 37.500 0.00 0.00 36.80 1.40
526 556 4.555262 CCGCTCCAACAAATGTGTAAAAT 58.445 39.130 0.00 0.00 36.80 1.82
527 557 3.797184 GCCGCTCCAACAAATGTGTAAAA 60.797 43.478 0.00 0.00 36.80 1.52
528 558 2.287909 GCCGCTCCAACAAATGTGTAAA 60.288 45.455 0.00 0.00 36.80 2.01
529 559 1.268352 GCCGCTCCAACAAATGTGTAA 59.732 47.619 0.00 0.00 36.80 2.41
530 560 0.878416 GCCGCTCCAACAAATGTGTA 59.122 50.000 0.00 0.00 36.80 2.90
531 561 1.106351 TGCCGCTCCAACAAATGTGT 61.106 50.000 0.00 0.00 40.75 3.72
532 562 0.387622 CTGCCGCTCCAACAAATGTG 60.388 55.000 0.00 0.00 0.00 3.21
533 563 1.959085 CTGCCGCTCCAACAAATGT 59.041 52.632 0.00 0.00 0.00 2.71
534 564 1.444895 GCTGCCGCTCCAACAAATG 60.445 57.895 0.00 0.00 0.00 2.32
535 565 2.639327 GGCTGCCGCTCCAACAAAT 61.639 57.895 1.35 0.00 36.09 2.32
536 566 3.294493 GGCTGCCGCTCCAACAAA 61.294 61.111 1.35 0.00 36.09 2.83
547 577 2.472909 GGATAGTTGCACGGCTGCC 61.473 63.158 9.11 9.11 43.51 4.85
548 578 2.472909 GGGATAGTTGCACGGCTGC 61.473 63.158 0.00 0.00 44.52 5.25
549 579 0.464373 ATGGGATAGTTGCACGGCTG 60.464 55.000 0.00 0.00 0.00 4.85
550 580 0.255890 AATGGGATAGTTGCACGGCT 59.744 50.000 0.00 0.00 0.00 5.52
551 581 1.102978 AAATGGGATAGTTGCACGGC 58.897 50.000 0.00 0.00 0.00 5.68
552 582 3.692101 TGTAAAATGGGATAGTTGCACGG 59.308 43.478 0.00 0.00 0.00 4.94
553 583 4.955925 TGTAAAATGGGATAGTTGCACG 57.044 40.909 0.00 0.00 0.00 5.34
554 584 6.449635 TGATGTAAAATGGGATAGTTGCAC 57.550 37.500 0.00 0.00 0.00 4.57
555 585 6.606796 ACATGATGTAAAATGGGATAGTTGCA 59.393 34.615 0.00 0.00 0.00 4.08
556 586 7.042797 ACATGATGTAAAATGGGATAGTTGC 57.957 36.000 0.00 0.00 0.00 4.17
557 587 7.922278 CCAACATGATGTAAAATGGGATAGTTG 59.078 37.037 0.00 0.00 0.00 3.16
558 588 7.838696 TCCAACATGATGTAAAATGGGATAGTT 59.161 33.333 12.63 0.00 28.28 2.24
559 589 7.353525 TCCAACATGATGTAAAATGGGATAGT 58.646 34.615 12.63 0.00 28.28 2.12
560 590 7.503566 ACTCCAACATGATGTAAAATGGGATAG 59.496 37.037 12.63 6.84 28.28 2.08
561 591 7.353525 ACTCCAACATGATGTAAAATGGGATA 58.646 34.615 12.63 0.00 28.28 2.59
562 592 6.197168 ACTCCAACATGATGTAAAATGGGAT 58.803 36.000 12.63 1.12 28.28 3.85
563 593 5.579047 ACTCCAACATGATGTAAAATGGGA 58.421 37.500 12.63 6.53 28.28 4.37
564 594 5.920193 ACTCCAACATGATGTAAAATGGG 57.080 39.130 12.63 7.30 28.28 4.00
565 595 6.071447 TCCAACTCCAACATGATGTAAAATGG 60.071 38.462 7.53 7.53 0.00 3.16
566 596 6.923012 TCCAACTCCAACATGATGTAAAATG 58.077 36.000 0.00 0.00 0.00 2.32
567 597 7.722949 ATCCAACTCCAACATGATGTAAAAT 57.277 32.000 0.00 0.00 0.00 1.82
568 598 8.821686 ATATCCAACTCCAACATGATGTAAAA 57.178 30.769 0.00 0.00 0.00 1.52
569 599 8.821686 AATATCCAACTCCAACATGATGTAAA 57.178 30.769 0.00 0.00 0.00 2.01
570 600 8.821686 AAATATCCAACTCCAACATGATGTAA 57.178 30.769 0.00 0.00 0.00 2.41
571 601 8.274322 AGAAATATCCAACTCCAACATGATGTA 58.726 33.333 0.00 0.00 0.00 2.29
572 602 7.067859 CAGAAATATCCAACTCCAACATGATGT 59.932 37.037 0.00 0.00 0.00 3.06
573 603 7.283807 TCAGAAATATCCAACTCCAACATGATG 59.716 37.037 0.00 0.00 0.00 3.07
574 604 7.348815 TCAGAAATATCCAACTCCAACATGAT 58.651 34.615 0.00 0.00 0.00 2.45
575 605 6.720309 TCAGAAATATCCAACTCCAACATGA 58.280 36.000 0.00 0.00 0.00 3.07
576 606 7.283807 TCATCAGAAATATCCAACTCCAACATG 59.716 37.037 0.00 0.00 0.00 3.21
577 607 7.348815 TCATCAGAAATATCCAACTCCAACAT 58.651 34.615 0.00 0.00 0.00 2.71
581 611 6.903516 ACATCATCAGAAATATCCAACTCCA 58.096 36.000 0.00 0.00 0.00 3.86
629 660 8.658840 AAGGCCTTTTAAATCACCTATTGTTA 57.341 30.769 13.78 0.00 0.00 2.41
630 661 7.553504 AAGGCCTTTTAAATCACCTATTGTT 57.446 32.000 13.78 0.00 0.00 2.83
781 814 5.670792 ACTTGACGGTTTGGACTGATATA 57.329 39.130 0.00 0.00 36.01 0.86
782 815 4.553330 ACTTGACGGTTTGGACTGATAT 57.447 40.909 0.00 0.00 36.01 1.63
866 905 1.610624 GGAGGATGCGAGGAACACAAA 60.611 52.381 0.00 0.00 0.00 2.83
869 908 0.036388 TTGGAGGATGCGAGGAACAC 60.036 55.000 0.00 0.00 0.00 3.32
1095 1144 4.200283 GAGTCGGGCTGGAGCGAG 62.200 72.222 0.00 0.00 43.26 5.03
1371 1420 2.126031 GTGAGGGCGTCGAAGTCC 60.126 66.667 14.63 14.63 0.00 3.85
1518 1567 0.816825 CCTTGCTCCCCATGATCACG 60.817 60.000 0.00 0.00 0.00 4.35
1668 1717 2.900273 GCCTCCATCGTAGTGGCA 59.100 61.111 0.00 0.00 42.79 4.92
1692 1741 3.911698 AGCACGTCGTCTGCACCA 61.912 61.111 10.08 0.00 37.08 4.17
1701 1750 4.969196 ACAGGGTGCAGCACGTCG 62.969 66.667 19.42 11.73 34.83 5.12
1808 1857 8.826546 ACATATCGAATTTGACTTGAATTTCG 57.173 30.769 11.78 0.00 38.85 3.46
1845 1902 6.041751 AGCCTAAGTTCGCAACTATACCTATT 59.958 38.462 2.60 0.00 41.91 1.73
1853 1910 2.827322 TGGTAGCCTAAGTTCGCAACTA 59.173 45.455 2.60 0.00 41.91 2.24
1962 2019 8.943002 CAGACATAGGTATTCGGTTAAAAACTT 58.057 33.333 0.00 0.00 0.00 2.66
1996 2053 6.292923 TGATAAAACCCCTCATATGTTACCG 58.707 40.000 1.90 0.00 0.00 4.02
2004 2061 5.420739 GGCAAAACTGATAAAACCCCTCATA 59.579 40.000 0.00 0.00 0.00 2.15
2012 2070 7.167468 CACAACTAGTGGCAAAACTGATAAAAC 59.833 37.037 0.00 0.00 44.69 2.43
2178 2240 2.034221 GACAAGTGGGGTCCAGGC 59.966 66.667 0.00 0.00 32.34 4.85
2239 2302 8.777865 TTCTAATTTCATTCTCTGTGTACTGG 57.222 34.615 0.00 0.00 0.00 4.00
2382 2459 1.453155 CCATGGACACTACTTGCCAC 58.547 55.000 5.56 0.00 35.17 5.01
2589 2686 6.939730 TGGATGAAGTTACAAACTATGCAAGA 59.060 34.615 0.00 0.00 41.91 3.02
2706 2803 2.319136 TATGCCCAATGTGTCGTACC 57.681 50.000 0.00 0.00 0.00 3.34
2744 2841 7.151308 TGAAAATGACGGCAAATACAATTTCT 58.849 30.769 0.00 0.00 34.95 2.52
2759 2856 2.159476 CCTGTCCATGCTGAAAATGACG 60.159 50.000 0.00 0.00 0.00 4.35
3226 3324 4.212143 TCTCCATCATTGACAAGGTGAG 57.788 45.455 0.00 5.37 0.00 3.51
3227 3325 4.849813 ATCTCCATCATTGACAAGGTGA 57.150 40.909 0.00 0.00 0.00 4.02
3315 3413 0.966179 TGGCACATGACACTCGTACT 59.034 50.000 0.00 0.00 0.00 2.73
3481 3581 9.155975 GAATAGTGGAATAGTAACCATGCATAG 57.844 37.037 0.00 0.00 38.48 2.23
3572 3672 3.511779 TGCCCCAGCATCTTCCTT 58.488 55.556 0.00 0.00 46.52 3.36
3606 3706 5.429130 CCCCAGGAACTTCTTAGTACAATC 58.571 45.833 0.00 0.00 34.60 2.67
3623 3723 3.496870 GGAGTACTAATCAATGCCCCAGG 60.497 52.174 0.00 0.00 0.00 4.45
3681 3781 6.317893 CCGCTGTAAAGAAATATAAGGGTGTT 59.682 38.462 0.00 0.00 0.00 3.32
3683 3783 5.238650 CCCGCTGTAAAGAAATATAAGGGTG 59.761 44.000 0.00 0.00 0.00 4.61
3702 4395 4.081087 ACACAATTACAATCTACTCCCGCT 60.081 41.667 0.00 0.00 0.00 5.52
3924 4617 3.129988 GGATCAAAAGGCATCAAGTGGAG 59.870 47.826 0.00 0.00 0.00 3.86
4218 4911 3.009723 ACATCGGAGGCACAACAAATAG 58.990 45.455 0.00 0.00 0.00 1.73
4258 4984 7.284489 GGTATTTAGGGAAATGCACTTATGTGA 59.716 37.037 12.65 0.00 39.74 3.58
4286 5012 7.681782 GCATTAAAATATGCTCAACTAGTGCCA 60.682 37.037 0.00 0.00 45.80 4.92
4306 5032 7.288810 ACTCCTTGATTTTGAACAGCATTAA 57.711 32.000 0.00 0.00 0.00 1.40
4419 5145 5.621422 CCTAACATTGATCACGACTTGTTG 58.379 41.667 0.00 0.00 0.00 3.33
4426 5152 4.122046 CAGATGCCTAACATTGATCACGA 58.878 43.478 0.00 0.00 39.84 4.35
4469 5195 3.371168 TCAAGTGCATTTTCAGTTTCGC 58.629 40.909 0.00 0.00 0.00 4.70
4470 5196 6.515043 AATTCAAGTGCATTTTCAGTTTCG 57.485 33.333 0.00 0.00 0.00 3.46
4698 5425 2.417339 GCGACTAGCCGATCATACAA 57.583 50.000 1.37 0.00 40.81 2.41
4741 5468 1.507141 GGGCATGCGAATTACTCCCG 61.507 60.000 12.44 0.00 0.00 5.14
4822 5549 4.710324 ACAAGGATGACAGGTTAAAACGA 58.290 39.130 0.00 0.00 0.00 3.85
4846 5573 9.487790 TTTTGTTTCCTATGCAAATAAAGAAGG 57.512 29.630 0.00 0.00 33.00 3.46
4989 5716 4.494484 TCACTCATTTCAGTCCGTATGTG 58.506 43.478 0.00 0.00 0.00 3.21
5043 5770 7.434492 AGACGTTCTAACTCTTTTCTGATTCA 58.566 34.615 0.00 0.00 0.00 2.57
5101 5828 4.342378 CCTGAGCTCAGCTACAACCTATAA 59.658 45.833 34.09 0.00 39.88 0.98
5185 5912 6.954352 ATCTTTAAGTTACAGAGTTCCCCT 57.046 37.500 5.10 0.00 0.00 4.79
5321 6053 3.189285 GGCCATTGACACAATGTTATGC 58.811 45.455 18.69 15.03 0.00 3.14
5381 6113 0.618968 ATGTCCTCCAGACCCACCTC 60.619 60.000 0.00 0.00 45.68 3.85
5409 6141 7.617225 TCTTCAACCTCGATTTCAACCTAATA 58.383 34.615 0.00 0.00 0.00 0.98
5410 6142 6.472887 TCTTCAACCTCGATTTCAACCTAAT 58.527 36.000 0.00 0.00 0.00 1.73
5413 6145 4.351874 TCTTCAACCTCGATTTCAACCT 57.648 40.909 0.00 0.00 0.00 3.50
5414 6146 4.784329 GTTCTTCAACCTCGATTTCAACC 58.216 43.478 0.00 0.00 0.00 3.77
5445 6436 3.725634 AGAGGTAGTATCAAAGGCTGGT 58.274 45.455 0.00 0.00 0.00 4.00
5483 6474 5.437289 TGAAACACATCCACTTTTAGCTG 57.563 39.130 0.00 0.00 0.00 4.24
5518 6509 2.303022 CAACCAAGGGAGCTAAGTCAGA 59.697 50.000 0.00 0.00 0.00 3.27
5537 6528 0.178984 GGGGAGGGGAAAACGAACAA 60.179 55.000 0.00 0.00 0.00 2.83
5557 6548 5.278315 GGTGGACTCTTTAACAATGGTCAAC 60.278 44.000 0.00 0.00 0.00 3.18


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.