Multiple sequence alignment - TraesCS2A01G210600

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS2A01G210600 chr2A 100.000 2670 0 0 1 2670 194537477 194540146 0.000000e+00 4931
1 TraesCS2A01G210600 chr2A 96.868 2267 59 3 1 2264 194863764 194861507 0.000000e+00 3783
2 TraesCS2A01G210600 chr2A 98.030 406 7 1 2265 2669 710677501 710677906 0.000000e+00 704
3 TraesCS2A01G210600 chr2A 97.567 411 9 1 2261 2670 194547014 194547424 0.000000e+00 702
4 TraesCS2A01G210600 chr2A 97.789 407 8 1 2264 2669 710683231 710682825 0.000000e+00 701
5 TraesCS2A01G210600 chr2A 97.304 408 10 1 2264 2670 647089835 647089428 0.000000e+00 691
6 TraesCS2A01G210600 chr2A 97.297 407 10 1 2265 2670 647097176 647096770 0.000000e+00 689
7 TraesCS2A01G210600 chr2A 89.513 267 24 4 10 273 194530833 194531098 4.260000e-88 335
8 TraesCS2A01G210600 chr2A 88.346 266 28 3 10 273 194864928 194864664 1.540000e-82 316
9 TraesCS2A01G210600 chr7A 95.366 2266 85 5 1 2264 91390550 91392797 0.000000e+00 3585
10 TraesCS2A01G210600 chr7A 90.899 1879 143 14 279 2141 38240704 38242570 0.000000e+00 2497
11 TraesCS2A01G210600 chr7A 84.158 404 54 8 279 674 38239296 38239697 1.500000e-102 383
12 TraesCS2A01G210600 chr7A 83.663 404 56 9 279 674 38239724 38240125 3.250000e-99 372
13 TraesCS2A01G210600 chr7A 77.901 362 72 8 317 674 91390391 91390748 4.480000e-53 219
14 TraesCS2A01G210600 chr7A 77.933 358 67 11 324 674 38238717 38239069 2.080000e-51 213
15 TraesCS2A01G210600 chr1B 89.454 1318 120 14 9 1311 601376874 601378187 0.000000e+00 1646
16 TraesCS2A01G210600 chr1B 88.503 461 37 8 1656 2115 601378805 601379250 6.500000e-151 544
17 TraesCS2A01G210600 chr1B 95.062 324 14 1 1347 1668 601378178 601378501 2.370000e-140 508
18 TraesCS2A01G210600 chr1B 89.130 276 26 4 1 273 601372785 601373059 9.150000e-90 340
19 TraesCS2A01G210600 chr1B 88.000 275 27 6 2 273 601374310 601374581 1.190000e-83 320
20 TraesCS2A01G210600 chr1B 79.772 351 65 6 327 674 601372637 601372984 1.590000e-62 250
21 TraesCS2A01G210600 chr1B 76.633 398 87 6 279 674 601374323 601374716 5.790000e-52 215
22 TraesCS2A01G210600 chr1B 81.893 243 38 4 1875 2117 676244257 676244493 1.620000e-47 200
23 TraesCS2A01G210600 chr1B 83.929 168 10 4 2114 2264 601381254 601381421 7.700000e-31 145
24 TraesCS2A01G210600 chr3A 97.561 410 9 1 2261 2669 499312384 499311975 0.000000e+00 701
25 TraesCS2A01G210600 chr6A 97.087 412 10 2 2260 2670 405572948 405572538 0.000000e+00 693
26 TraesCS2A01G210600 chr6A 97.059 408 11 1 2264 2670 405565312 405564905 0.000000e+00 686
27 TraesCS2A01G210600 chr5A 96.594 411 13 1 2261 2670 659902155 659902565 0.000000e+00 680
28 TraesCS2A01G210600 chr3B 88.732 284 25 6 1 280 393300728 393300448 9.150000e-90 340
29 TraesCS2A01G210600 chrUn 86.319 307 37 3 1814 2118 96376500 96376803 1.980000e-86 329
30 TraesCS2A01G210600 chr5B 88.302 265 25 4 1 261 14669011 14668749 2.000000e-81 313
31 TraesCS2A01G210600 chr1D 86.813 273 32 4 3 273 11396154 11396424 4.320000e-78 302


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS2A01G210600 chr2A 194537477 194540146 2669 False 4931.00 4931 100.000000 1 2670 1 chr2A.!!$F2 2669
1 TraesCS2A01G210600 chr2A 194861507 194864928 3421 True 2049.50 3783 92.607000 1 2264 2 chr2A.!!$R4 2263
2 TraesCS2A01G210600 chr7A 91390391 91392797 2406 False 1902.00 3585 86.633500 1 2264 2 chr7A.!!$F2 2263
3 TraesCS2A01G210600 chr7A 38238717 38242570 3853 False 866.25 2497 84.163250 279 2141 4 chr7A.!!$F1 1862
4 TraesCS2A01G210600 chr1B 601372637 601381421 8784 False 496.00 1646 86.310375 1 2264 8 chr1B.!!$F2 2263

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
767 7385 0.39206 GACGACTTTTACGGCCCCAT 60.392 55.0 0.0 0.0 32.13 4.0 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2597 11615 0.035317 AGATGACGCAACCAAGCTCA 59.965 50.0 0.0 0.0 0.0 4.26 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
78 2924 1.820481 CCACGAACAAACGGGTGGT 60.820 57.895 1.00 0.00 43.82 4.16
98 2944 3.034721 TCGTGCATCGAGGTTAACTTT 57.965 42.857 5.42 0.00 44.01 2.66
146 5128 1.748879 CCCGTACCGAGGTTACCGA 60.749 63.158 0.00 0.00 0.00 4.69
200 5392 3.518590 GTTGATATCGTCGGTTTCCACT 58.481 45.455 0.00 0.00 0.00 4.00
234 5426 1.001048 CTCGTTGGTTCCGAGTGTGTA 60.001 52.381 1.87 0.00 45.09 2.90
587 7205 1.488705 AACTCTGACGGGCCCATCAA 61.489 55.000 23.07 11.85 0.00 2.57
651 7269 5.152193 TCTCCTATAAATCCATCGGTTCCA 58.848 41.667 0.00 0.00 0.00 3.53
692 7310 0.609131 CTCCCAGCATCAACCGGTTT 60.609 55.000 19.55 0.01 0.00 3.27
767 7385 0.392060 GACGACTTTTACGGCCCCAT 60.392 55.000 0.00 0.00 32.13 4.00
818 7436 1.778591 CGTTCACGCAAAACATTGTCC 59.221 47.619 0.00 0.00 0.00 4.02
1020 7639 1.102154 CTCCACACACAAAGCCACAA 58.898 50.000 0.00 0.00 0.00 3.33
1032 7651 2.345244 CCACAACGCAGGCTCTCT 59.655 61.111 0.00 0.00 0.00 3.10
1439 8105 2.923426 GATCGTTCGCATGGAGGGCA 62.923 60.000 0.00 0.00 0.00 5.36
1734 8720 6.154706 TGAGAGGGAAACTTGTATTAGACTCC 59.845 42.308 0.00 0.00 0.00 3.85
1783 8769 3.646162 TGTCCATTAAGACTGGAGTGTGT 59.354 43.478 0.00 0.00 43.33 3.72
1799 8785 2.351726 GTGTGTCGGCTGTTCCATTATC 59.648 50.000 0.00 0.00 34.01 1.75
1946 8933 1.001974 CCTCTGATGGACAACCGACAA 59.998 52.381 0.00 0.00 39.42 3.18
1992 8979 5.560724 TGGCAAGCTCTCAGTTATACTTTT 58.439 37.500 0.00 0.00 0.00 2.27
2013 9000 2.052590 GCGTGCGAGCGTTTTTCA 60.053 55.556 0.00 0.00 0.00 2.69
2067 9063 1.525077 GAGGTCCGTTGCCACACAA 60.525 57.895 0.00 0.00 35.33 3.33
2107 9103 1.611491 TCACTGTGTACGCTCATGTCA 59.389 47.619 8.10 0.00 0.00 3.58
2230 11248 4.631131 TCTCTTTTTGATCAACTCGCTCA 58.369 39.130 7.89 0.00 0.00 4.26
2264 11282 2.358322 AACCCATCGGTGTTGAAGTT 57.642 45.000 0.00 0.00 43.71 2.66
2265 11283 1.604604 ACCCATCGGTGTTGAAGTTG 58.395 50.000 0.00 0.00 42.48 3.16
2266 11284 1.133915 ACCCATCGGTGTTGAAGTTGT 60.134 47.619 0.00 0.00 42.48 3.32
2267 11285 2.105134 ACCCATCGGTGTTGAAGTTGTA 59.895 45.455 0.00 0.00 42.48 2.41
2268 11286 3.142951 CCCATCGGTGTTGAAGTTGTAA 58.857 45.455 0.00 0.00 0.00 2.41
2269 11287 3.058501 CCCATCGGTGTTGAAGTTGTAAC 60.059 47.826 0.00 0.00 0.00 2.50
2270 11288 3.562141 CCATCGGTGTTGAAGTTGTAACA 59.438 43.478 0.00 0.00 34.66 2.41
2271 11289 4.215399 CCATCGGTGTTGAAGTTGTAACAT 59.785 41.667 0.00 0.00 38.84 2.71
2272 11290 5.382303 CATCGGTGTTGAAGTTGTAACATC 58.618 41.667 5.79 4.75 38.84 3.06
2273 11291 3.810941 TCGGTGTTGAAGTTGTAACATCC 59.189 43.478 5.79 7.73 38.84 3.51
2274 11292 3.813166 CGGTGTTGAAGTTGTAACATCCT 59.187 43.478 5.79 0.00 38.84 3.24
2275 11293 4.084013 CGGTGTTGAAGTTGTAACATCCTC 60.084 45.833 5.79 0.00 38.84 3.71
2276 11294 4.084013 GGTGTTGAAGTTGTAACATCCTCG 60.084 45.833 5.79 0.00 38.84 4.63
2277 11295 4.748102 GTGTTGAAGTTGTAACATCCTCGA 59.252 41.667 5.79 0.00 38.84 4.04
2278 11296 5.408604 GTGTTGAAGTTGTAACATCCTCGAT 59.591 40.000 5.79 0.00 38.84 3.59
2279 11297 6.588756 GTGTTGAAGTTGTAACATCCTCGATA 59.411 38.462 5.79 0.00 38.84 2.92
2280 11298 6.588756 TGTTGAAGTTGTAACATCCTCGATAC 59.411 38.462 0.00 0.00 32.30 2.24
2281 11299 5.337554 TGAAGTTGTAACATCCTCGATACG 58.662 41.667 0.00 0.00 0.00 3.06
2282 11300 5.124297 TGAAGTTGTAACATCCTCGATACGA 59.876 40.000 0.00 0.00 0.00 3.43
2283 11301 4.918037 AGTTGTAACATCCTCGATACGAC 58.082 43.478 4.49 4.49 34.34 4.34
2284 11302 4.639310 AGTTGTAACATCCTCGATACGACT 59.361 41.667 8.17 8.17 37.89 4.18
2285 11303 5.819379 AGTTGTAACATCCTCGATACGACTA 59.181 40.000 11.19 0.00 39.86 2.59
2286 11304 6.485984 AGTTGTAACATCCTCGATACGACTAT 59.514 38.462 11.19 0.00 39.86 2.12
2287 11305 7.658982 AGTTGTAACATCCTCGATACGACTATA 59.341 37.037 11.19 0.00 39.86 1.31
2288 11306 7.592439 TGTAACATCCTCGATACGACTATAG 57.408 40.000 0.00 0.00 0.00 1.31
2289 11307 5.548706 AACATCCTCGATACGACTATAGC 57.451 43.478 0.00 0.00 0.00 2.97
2290 11308 4.834534 ACATCCTCGATACGACTATAGCT 58.165 43.478 0.00 0.00 0.00 3.32
2291 11309 4.871557 ACATCCTCGATACGACTATAGCTC 59.128 45.833 0.00 0.00 0.00 4.09
2292 11310 3.859443 TCCTCGATACGACTATAGCTCC 58.141 50.000 0.00 0.00 0.00 4.70
2293 11311 2.937799 CCTCGATACGACTATAGCTCCC 59.062 54.545 0.00 0.00 0.00 4.30
2294 11312 3.597255 CTCGATACGACTATAGCTCCCA 58.403 50.000 0.00 0.00 0.00 4.37
2295 11313 3.332919 TCGATACGACTATAGCTCCCAC 58.667 50.000 0.00 0.00 0.00 4.61
2296 11314 2.093941 CGATACGACTATAGCTCCCACG 59.906 54.545 0.00 0.00 0.00 4.94
2297 11315 2.627515 TACGACTATAGCTCCCACGT 57.372 50.000 0.00 0.00 36.52 4.49
2298 11316 1.022735 ACGACTATAGCTCCCACGTG 58.977 55.000 9.08 9.08 0.00 4.49
2299 11317 1.022735 CGACTATAGCTCCCACGTGT 58.977 55.000 15.65 0.00 0.00 4.49
2300 11318 1.002684 CGACTATAGCTCCCACGTGTC 60.003 57.143 15.65 0.00 0.00 3.67
2301 11319 1.002684 GACTATAGCTCCCACGTGTCG 60.003 57.143 15.65 4.04 0.00 4.35
2302 11320 1.306148 CTATAGCTCCCACGTGTCGA 58.694 55.000 15.65 8.55 0.00 4.20
2303 11321 1.264557 CTATAGCTCCCACGTGTCGAG 59.735 57.143 20.16 20.16 0.00 4.04
2304 11322 1.384989 ATAGCTCCCACGTGTCGAGG 61.385 60.000 23.66 14.89 37.35 4.63
2306 11324 3.680786 CTCCCACGTGTCGAGGCA 61.681 66.667 15.65 0.00 36.35 4.75
2307 11325 3.916392 CTCCCACGTGTCGAGGCAC 62.916 68.421 15.65 0.00 36.35 5.01
2317 11335 3.545724 TCGAGGCACGACTTAGAGA 57.454 52.632 2.07 0.00 46.45 3.10
2318 11336 1.085091 TCGAGGCACGACTTAGAGAC 58.915 55.000 2.07 0.00 46.45 3.36
2319 11337 0.803117 CGAGGCACGACTTAGAGACA 59.197 55.000 0.00 0.00 45.77 3.41
2320 11338 1.402259 CGAGGCACGACTTAGAGACAT 59.598 52.381 0.00 0.00 45.77 3.06
2321 11339 2.612672 CGAGGCACGACTTAGAGACATA 59.387 50.000 0.00 0.00 45.77 2.29
2322 11340 3.064958 CGAGGCACGACTTAGAGACATAA 59.935 47.826 0.00 0.00 45.77 1.90
2323 11341 4.261238 CGAGGCACGACTTAGAGACATAAT 60.261 45.833 0.00 0.00 45.77 1.28
2324 11342 5.189659 AGGCACGACTTAGAGACATAATC 57.810 43.478 0.00 0.00 0.00 1.75
2325 11343 3.975670 GGCACGACTTAGAGACATAATCG 59.024 47.826 0.00 0.00 0.00 3.34
2326 11344 3.422546 GCACGACTTAGAGACATAATCGC 59.577 47.826 0.00 0.00 0.00 4.58
2327 11345 4.598062 CACGACTTAGAGACATAATCGCA 58.402 43.478 0.00 0.00 0.00 5.10
2328 11346 5.215903 CACGACTTAGAGACATAATCGCAT 58.784 41.667 0.00 0.00 0.00 4.73
2329 11347 5.687730 CACGACTTAGAGACATAATCGCATT 59.312 40.000 0.00 0.00 0.00 3.56
2330 11348 5.687730 ACGACTTAGAGACATAATCGCATTG 59.312 40.000 0.00 0.00 0.00 2.82
2331 11349 5.915196 CGACTTAGAGACATAATCGCATTGA 59.085 40.000 0.00 0.00 0.00 2.57
2332 11350 6.417930 CGACTTAGAGACATAATCGCATTGAA 59.582 38.462 0.00 0.00 0.00 2.69
2333 11351 7.357941 CGACTTAGAGACATAATCGCATTGAAG 60.358 40.741 0.00 0.00 0.00 3.02
2334 11352 6.201806 ACTTAGAGACATAATCGCATTGAAGC 59.798 38.462 0.00 0.00 0.00 3.86
2335 11353 4.445453 AGAGACATAATCGCATTGAAGCA 58.555 39.130 0.00 0.00 0.00 3.91
2336 11354 5.061853 AGAGACATAATCGCATTGAAGCAT 58.938 37.500 0.00 0.00 0.00 3.79
2337 11355 6.226052 AGAGACATAATCGCATTGAAGCATA 58.774 36.000 0.00 0.00 0.00 3.14
2338 11356 6.877855 AGAGACATAATCGCATTGAAGCATAT 59.122 34.615 0.00 0.00 0.00 1.78
2339 11357 6.839033 AGACATAATCGCATTGAAGCATATG 58.161 36.000 0.00 0.00 34.28 1.78
2340 11358 6.429078 AGACATAATCGCATTGAAGCATATGT 59.571 34.615 4.29 0.00 39.25 2.29
2341 11359 6.605849 ACATAATCGCATTGAAGCATATGTC 58.394 36.000 4.29 0.00 35.41 3.06
2342 11360 3.800929 ATCGCATTGAAGCATATGTCG 57.199 42.857 4.29 0.00 0.00 4.35
2343 11361 1.261354 TCGCATTGAAGCATATGTCGC 59.739 47.619 4.29 0.00 0.00 5.19
2344 11362 1.003652 CGCATTGAAGCATATGTCGCA 60.004 47.619 4.29 0.00 0.00 5.10
2345 11363 2.539344 CGCATTGAAGCATATGTCGCAA 60.539 45.455 4.29 6.65 0.00 4.85
2346 11364 3.040795 GCATTGAAGCATATGTCGCAAG 58.959 45.455 4.29 2.89 0.00 4.01
2347 11365 3.488047 GCATTGAAGCATATGTCGCAAGT 60.488 43.478 4.29 0.00 39.48 3.16
2348 11366 3.745332 TTGAAGCATATGTCGCAAGTG 57.255 42.857 4.29 0.00 39.48 3.16
2349 11367 2.971307 TGAAGCATATGTCGCAAGTGA 58.029 42.857 4.29 0.00 39.48 3.41
2350 11368 2.931969 TGAAGCATATGTCGCAAGTGAG 59.068 45.455 4.29 0.00 39.48 3.51
2351 11369 1.945387 AGCATATGTCGCAAGTGAGG 58.055 50.000 4.29 0.00 39.48 3.86
2352 11370 1.208052 AGCATATGTCGCAAGTGAGGT 59.792 47.619 4.29 0.00 39.48 3.85
2353 11371 2.430694 AGCATATGTCGCAAGTGAGGTA 59.569 45.455 4.29 0.00 39.48 3.08
2354 11372 3.118775 AGCATATGTCGCAAGTGAGGTAA 60.119 43.478 4.29 0.00 39.48 2.85
2355 11373 3.809832 GCATATGTCGCAAGTGAGGTAAT 59.190 43.478 4.29 0.00 39.48 1.89
2356 11374 4.084328 GCATATGTCGCAAGTGAGGTAATC 60.084 45.833 4.29 0.00 39.48 1.75
2357 11375 3.895232 ATGTCGCAAGTGAGGTAATCT 57.105 42.857 0.00 0.00 39.48 2.40
2358 11376 3.678056 TGTCGCAAGTGAGGTAATCTT 57.322 42.857 0.00 0.00 39.48 2.40
2359 11377 3.585862 TGTCGCAAGTGAGGTAATCTTC 58.414 45.455 0.00 0.00 39.48 2.87
2360 11378 3.006430 TGTCGCAAGTGAGGTAATCTTCA 59.994 43.478 0.00 0.00 39.48 3.02
2361 11379 3.368236 GTCGCAAGTGAGGTAATCTTCAC 59.632 47.826 2.97 2.97 46.51 3.18
2368 11386 3.751698 GTGAGGTAATCTTCACACAACCC 59.248 47.826 5.78 0.00 45.79 4.11
2369 11387 3.392947 TGAGGTAATCTTCACACAACCCA 59.607 43.478 0.00 0.00 0.00 4.51
2370 11388 4.042809 TGAGGTAATCTTCACACAACCCAT 59.957 41.667 0.00 0.00 0.00 4.00
2371 11389 4.335416 AGGTAATCTTCACACAACCCATG 58.665 43.478 0.00 0.00 0.00 3.66
2372 11390 4.079253 GGTAATCTTCACACAACCCATGT 58.921 43.478 0.00 0.00 45.34 3.21
2373 11391 5.013704 AGGTAATCTTCACACAACCCATGTA 59.986 40.000 0.00 0.00 41.46 2.29
2374 11392 5.708230 GGTAATCTTCACACAACCCATGTAA 59.292 40.000 0.00 0.00 41.46 2.41
2375 11393 6.377146 GGTAATCTTCACACAACCCATGTAAT 59.623 38.462 0.00 0.00 41.46 1.89
2376 11394 7.554835 GGTAATCTTCACACAACCCATGTAATA 59.445 37.037 0.00 0.00 41.46 0.98
2377 11395 7.391148 AATCTTCACACAACCCATGTAATAC 57.609 36.000 0.00 0.00 41.46 1.89
2378 11396 5.870706 TCTTCACACAACCCATGTAATACA 58.129 37.500 0.00 0.00 41.46 2.29
2379 11397 6.480763 TCTTCACACAACCCATGTAATACAT 58.519 36.000 0.00 0.00 41.46 2.29
2380 11398 7.625469 TCTTCACACAACCCATGTAATACATA 58.375 34.615 5.49 0.00 41.46 2.29
2381 11399 8.103935 TCTTCACACAACCCATGTAATACATAA 58.896 33.333 5.49 0.00 41.46 1.90
2382 11400 7.857734 TCACACAACCCATGTAATACATAAG 57.142 36.000 5.49 3.25 41.46 1.73
2383 11401 6.826231 TCACACAACCCATGTAATACATAAGG 59.174 38.462 15.94 15.94 41.46 2.69
2384 11402 6.039270 CACACAACCCATGTAATACATAAGGG 59.961 42.308 20.91 20.91 43.69 3.95
2385 11403 6.069323 ACACAACCCATGTAATACATAAGGGA 60.069 38.462 26.38 0.00 41.79 4.20
2386 11404 6.831353 CACAACCCATGTAATACATAAGGGAA 59.169 38.462 26.38 0.00 41.79 3.97
2387 11405 7.340743 CACAACCCATGTAATACATAAGGGAAA 59.659 37.037 26.38 0.00 41.79 3.13
2388 11406 7.559897 ACAACCCATGTAATACATAAGGGAAAG 59.440 37.037 26.38 18.92 41.79 2.62
2389 11407 7.460214 ACCCATGTAATACATAAGGGAAAGA 57.540 36.000 26.38 0.00 41.79 2.52
2390 11408 7.518188 ACCCATGTAATACATAAGGGAAAGAG 58.482 38.462 26.38 7.48 41.79 2.85
2391 11409 7.349859 ACCCATGTAATACATAAGGGAAAGAGA 59.650 37.037 26.38 0.00 41.79 3.10
2392 11410 8.386264 CCCATGTAATACATAAGGGAAAGAGAT 58.614 37.037 18.88 0.00 41.79 2.75
2402 11420 8.432805 ACATAAGGGAAAGAGATACATAGTTGG 58.567 37.037 0.00 0.00 0.00 3.77
2403 11421 5.297569 AGGGAAAGAGATACATAGTTGGC 57.702 43.478 0.00 0.00 0.00 4.52
2404 11422 4.971924 AGGGAAAGAGATACATAGTTGGCT 59.028 41.667 0.00 0.00 0.00 4.75
2405 11423 5.430089 AGGGAAAGAGATACATAGTTGGCTT 59.570 40.000 0.00 0.00 0.00 4.35
2406 11424 6.615726 AGGGAAAGAGATACATAGTTGGCTTA 59.384 38.462 0.00 0.00 0.00 3.09
2407 11425 6.706716 GGGAAAGAGATACATAGTTGGCTTAC 59.293 42.308 0.00 0.00 0.00 2.34
2408 11426 7.272978 GGAAAGAGATACATAGTTGGCTTACA 58.727 38.462 0.00 0.00 0.00 2.41
2409 11427 7.769044 GGAAAGAGATACATAGTTGGCTTACAA 59.231 37.037 0.00 0.00 36.54 2.41
2410 11428 9.331282 GAAAGAGATACATAGTTGGCTTACAAT 57.669 33.333 0.00 0.00 41.95 2.71
2411 11429 8.894768 AAGAGATACATAGTTGGCTTACAATC 57.105 34.615 0.00 0.00 41.95 2.67
2412 11430 7.148641 AGAGATACATAGTTGGCTTACAATCG 58.851 38.462 0.00 0.00 41.95 3.34
2413 11431 5.696724 AGATACATAGTTGGCTTACAATCGC 59.303 40.000 0.00 0.00 41.95 4.58
2414 11432 2.943033 ACATAGTTGGCTTACAATCGCC 59.057 45.455 0.00 0.00 46.46 5.54
2420 11438 1.448985 GGCTTACAATCGCCACTTCA 58.551 50.000 0.00 0.00 45.59 3.02
2421 11439 1.130561 GGCTTACAATCGCCACTTCAC 59.869 52.381 0.00 0.00 45.59 3.18
2422 11440 1.804151 GCTTACAATCGCCACTTCACA 59.196 47.619 0.00 0.00 0.00 3.58
2423 11441 2.420022 GCTTACAATCGCCACTTCACAT 59.580 45.455 0.00 0.00 0.00 3.21
2424 11442 3.621268 GCTTACAATCGCCACTTCACATA 59.379 43.478 0.00 0.00 0.00 2.29
2425 11443 4.094294 GCTTACAATCGCCACTTCACATAA 59.906 41.667 0.00 0.00 0.00 1.90
2426 11444 5.220854 GCTTACAATCGCCACTTCACATAAT 60.221 40.000 0.00 0.00 0.00 1.28
2427 11445 6.677920 GCTTACAATCGCCACTTCACATAATT 60.678 38.462 0.00 0.00 0.00 1.40
2428 11446 7.466725 GCTTACAATCGCCACTTCACATAATTA 60.467 37.037 0.00 0.00 0.00 1.40
2429 11447 6.119144 ACAATCGCCACTTCACATAATTAC 57.881 37.500 0.00 0.00 0.00 1.89
2430 11448 5.645929 ACAATCGCCACTTCACATAATTACA 59.354 36.000 0.00 0.00 0.00 2.41
2431 11449 6.318648 ACAATCGCCACTTCACATAATTACAT 59.681 34.615 0.00 0.00 0.00 2.29
2432 11450 5.733226 TCGCCACTTCACATAATTACATG 57.267 39.130 0.00 0.00 0.00 3.21
2433 11451 5.423886 TCGCCACTTCACATAATTACATGA 58.576 37.500 0.00 0.00 0.00 3.07
2434 11452 5.877564 TCGCCACTTCACATAATTACATGAA 59.122 36.000 0.00 11.05 0.00 2.57
2435 11453 6.542005 TCGCCACTTCACATAATTACATGAAT 59.458 34.615 0.00 0.00 31.00 2.57
2436 11454 7.713073 TCGCCACTTCACATAATTACATGAATA 59.287 33.333 0.00 0.00 31.00 1.75
2437 11455 8.341903 CGCCACTTCACATAATTACATGAATAA 58.658 33.333 0.00 0.00 31.00 1.40
2465 11483 9.673454 CATTACATCAATCAAATACACTCATGG 57.327 33.333 0.00 0.00 0.00 3.66
2466 11484 8.806429 TTACATCAATCAAATACACTCATGGT 57.194 30.769 0.00 0.00 0.00 3.55
2467 11485 7.325660 ACATCAATCAAATACACTCATGGTC 57.674 36.000 0.00 0.00 0.00 4.02
2468 11486 6.319658 ACATCAATCAAATACACTCATGGTCC 59.680 38.462 0.00 0.00 0.00 4.46
2469 11487 4.875536 TCAATCAAATACACTCATGGTCCG 59.124 41.667 0.00 0.00 0.00 4.79
2470 11488 4.753516 ATCAAATACACTCATGGTCCGA 57.246 40.909 0.00 0.00 0.00 4.55
2471 11489 3.857052 TCAAATACACTCATGGTCCGAC 58.143 45.455 0.00 0.00 0.00 4.79
2472 11490 3.513912 TCAAATACACTCATGGTCCGACT 59.486 43.478 0.00 0.00 0.00 4.18
2473 11491 4.707934 TCAAATACACTCATGGTCCGACTA 59.292 41.667 0.00 0.00 0.00 2.59
2474 11492 4.650754 AATACACTCATGGTCCGACTAC 57.349 45.455 0.00 0.00 0.00 2.73
2475 11493 0.809385 ACACTCATGGTCCGACTACG 59.191 55.000 0.00 0.00 39.43 3.51
2491 11509 6.470557 CGACTACGGAACCAAAATAAAAGA 57.529 37.500 0.00 0.00 35.72 2.52
2492 11510 6.890558 CGACTACGGAACCAAAATAAAAGAA 58.109 36.000 0.00 0.00 35.72 2.52
2493 11511 7.013529 CGACTACGGAACCAAAATAAAAGAAG 58.986 38.462 0.00 0.00 35.72 2.85
2494 11512 7.095523 CGACTACGGAACCAAAATAAAAGAAGA 60.096 37.037 0.00 0.00 35.72 2.87
2495 11513 8.454570 ACTACGGAACCAAAATAAAAGAAGAA 57.545 30.769 0.00 0.00 0.00 2.52
2496 11514 8.347771 ACTACGGAACCAAAATAAAAGAAGAAC 58.652 33.333 0.00 0.00 0.00 3.01
2497 11515 6.509656 ACGGAACCAAAATAAAAGAAGAACC 58.490 36.000 0.00 0.00 0.00 3.62
2498 11516 5.924254 CGGAACCAAAATAAAAGAAGAACCC 59.076 40.000 0.00 0.00 0.00 4.11
2499 11517 6.228258 GGAACCAAAATAAAAGAAGAACCCC 58.772 40.000 0.00 0.00 0.00 4.95
2500 11518 6.183361 GGAACCAAAATAAAAGAAGAACCCCA 60.183 38.462 0.00 0.00 0.00 4.96
2501 11519 6.816616 ACCAAAATAAAAGAAGAACCCCAA 57.183 33.333 0.00 0.00 0.00 4.12
2502 11520 7.201702 ACCAAAATAAAAGAAGAACCCCAAA 57.798 32.000 0.00 0.00 0.00 3.28
2503 11521 7.811282 ACCAAAATAAAAGAAGAACCCCAAAT 58.189 30.769 0.00 0.00 0.00 2.32
2504 11522 7.719193 ACCAAAATAAAAGAAGAACCCCAAATG 59.281 33.333 0.00 0.00 0.00 2.32
2505 11523 7.308529 CCAAAATAAAAGAAGAACCCCAAATGC 60.309 37.037 0.00 0.00 0.00 3.56
2506 11524 3.385193 AAAAGAAGAACCCCAAATGCG 57.615 42.857 0.00 0.00 0.00 4.73
2507 11525 2.286365 AAGAAGAACCCCAAATGCGA 57.714 45.000 0.00 0.00 0.00 5.10
2508 11526 1.534729 AGAAGAACCCCAAATGCGAC 58.465 50.000 0.00 0.00 0.00 5.19
2509 11527 1.202879 AGAAGAACCCCAAATGCGACA 60.203 47.619 0.00 0.00 0.00 4.35
2510 11528 0.958822 AAGAACCCCAAATGCGACAC 59.041 50.000 0.00 0.00 0.00 3.67
2511 11529 1.209127 GAACCCCAAATGCGACACG 59.791 57.895 0.00 0.00 0.00 4.49
2512 11530 2.195123 GAACCCCAAATGCGACACGG 62.195 60.000 0.00 0.00 0.00 4.94
2513 11531 2.671619 CCCCAAATGCGACACGGT 60.672 61.111 0.00 0.00 0.00 4.83
2514 11532 2.686816 CCCCAAATGCGACACGGTC 61.687 63.158 0.00 0.00 0.00 4.79
2515 11533 2.686816 CCCAAATGCGACACGGTCC 61.687 63.158 0.00 0.00 0.00 4.46
2516 11534 2.686816 CCAAATGCGACACGGTCCC 61.687 63.158 0.00 0.00 0.00 4.46
2517 11535 2.359478 AAATGCGACACGGTCCCC 60.359 61.111 0.00 0.00 0.00 4.81
2529 11547 3.078836 GTCCCCGATCGACCCCAA 61.079 66.667 18.66 0.00 0.00 4.12
2530 11548 3.078836 TCCCCGATCGACCCCAAC 61.079 66.667 18.66 0.00 0.00 3.77
2531 11549 3.081409 CCCCGATCGACCCCAACT 61.081 66.667 18.66 0.00 0.00 3.16
2532 11550 2.186903 CCCGATCGACCCCAACTG 59.813 66.667 18.66 0.00 0.00 3.16
2533 11551 2.186903 CCGATCGACCCCAACTGG 59.813 66.667 18.66 0.00 0.00 4.00
2544 11562 2.377136 CCAACTGGGCTCCACTACT 58.623 57.895 0.00 0.00 0.00 2.57
2545 11563 0.036010 CCAACTGGGCTCCACTACTG 60.036 60.000 0.00 0.00 0.00 2.74
2546 11564 0.976641 CAACTGGGCTCCACTACTGA 59.023 55.000 0.00 0.00 0.00 3.41
2547 11565 1.556911 CAACTGGGCTCCACTACTGAT 59.443 52.381 0.00 0.00 0.00 2.90
2548 11566 1.490574 ACTGGGCTCCACTACTGATC 58.509 55.000 0.00 0.00 0.00 2.92
2549 11567 1.273267 ACTGGGCTCCACTACTGATCA 60.273 52.381 0.00 0.00 0.00 2.92
2550 11568 1.833630 CTGGGCTCCACTACTGATCAA 59.166 52.381 0.00 0.00 0.00 2.57
2551 11569 1.555075 TGGGCTCCACTACTGATCAAC 59.445 52.381 0.00 0.00 0.00 3.18
2552 11570 1.834263 GGGCTCCACTACTGATCAACT 59.166 52.381 0.00 0.00 0.00 3.16
2553 11571 3.031736 GGGCTCCACTACTGATCAACTA 58.968 50.000 0.00 0.00 0.00 2.24
2554 11572 3.068873 GGGCTCCACTACTGATCAACTAG 59.931 52.174 0.00 1.29 0.00 2.57
2555 11573 3.954904 GGCTCCACTACTGATCAACTAGA 59.045 47.826 12.17 0.00 0.00 2.43
2556 11574 4.402793 GGCTCCACTACTGATCAACTAGAA 59.597 45.833 12.17 0.57 0.00 2.10
2557 11575 5.344884 GCTCCACTACTGATCAACTAGAAC 58.655 45.833 12.17 0.00 0.00 3.01
2558 11576 5.562506 TCCACTACTGATCAACTAGAACG 57.437 43.478 12.17 0.00 0.00 3.95
2559 11577 5.250982 TCCACTACTGATCAACTAGAACGA 58.749 41.667 12.17 0.00 0.00 3.85
2560 11578 5.708697 TCCACTACTGATCAACTAGAACGAA 59.291 40.000 12.17 0.00 0.00 3.85
2561 11579 6.208007 TCCACTACTGATCAACTAGAACGAAA 59.792 38.462 12.17 0.00 0.00 3.46
2562 11580 6.308282 CCACTACTGATCAACTAGAACGAAAC 59.692 42.308 12.17 0.00 0.00 2.78
2563 11581 6.861572 CACTACTGATCAACTAGAACGAAACA 59.138 38.462 12.17 0.00 0.00 2.83
2564 11582 7.381408 CACTACTGATCAACTAGAACGAAACAA 59.619 37.037 12.17 0.00 0.00 2.83
2565 11583 6.526566 ACTGATCAACTAGAACGAAACAAC 57.473 37.500 0.00 0.00 0.00 3.32
2566 11584 6.046593 ACTGATCAACTAGAACGAAACAACA 58.953 36.000 0.00 0.00 0.00 3.33
2567 11585 6.706270 ACTGATCAACTAGAACGAAACAACAT 59.294 34.615 0.00 0.00 0.00 2.71
2568 11586 7.870954 ACTGATCAACTAGAACGAAACAACATA 59.129 33.333 0.00 0.00 0.00 2.29
2569 11587 8.596271 TGATCAACTAGAACGAAACAACATAA 57.404 30.769 0.00 0.00 0.00 1.90
2570 11588 9.047371 TGATCAACTAGAACGAAACAACATAAA 57.953 29.630 0.00 0.00 0.00 1.40
2571 11589 9.530129 GATCAACTAGAACGAAACAACATAAAG 57.470 33.333 0.00 0.00 0.00 1.85
2572 11590 8.651391 TCAACTAGAACGAAACAACATAAAGA 57.349 30.769 0.00 0.00 0.00 2.52
2573 11591 9.100554 TCAACTAGAACGAAACAACATAAAGAA 57.899 29.630 0.00 0.00 0.00 2.52
2574 11592 9.155053 CAACTAGAACGAAACAACATAAAGAAC 57.845 33.333 0.00 0.00 0.00 3.01
2575 11593 8.428186 ACTAGAACGAAACAACATAAAGAACA 57.572 30.769 0.00 0.00 0.00 3.18
2576 11594 8.333186 ACTAGAACGAAACAACATAAAGAACAC 58.667 33.333 0.00 0.00 0.00 3.32
2577 11595 6.189567 AGAACGAAACAACATAAAGAACACG 58.810 36.000 0.00 0.00 0.00 4.49
2578 11596 5.721876 ACGAAACAACATAAAGAACACGA 57.278 34.783 0.00 0.00 0.00 4.35
2579 11597 6.295039 ACGAAACAACATAAAGAACACGAT 57.705 33.333 0.00 0.00 0.00 3.73
2580 11598 6.360329 ACGAAACAACATAAAGAACACGATC 58.640 36.000 0.00 0.00 0.00 3.69
2581 11599 6.202188 ACGAAACAACATAAAGAACACGATCT 59.798 34.615 0.00 0.00 0.00 2.75
2582 11600 7.069569 CGAAACAACATAAAGAACACGATCTT 58.930 34.615 0.00 0.00 41.34 2.40
2583 11601 7.266335 CGAAACAACATAAAGAACACGATCTTC 59.734 37.037 0.00 0.00 38.69 2.87
2584 11602 7.490962 AACAACATAAAGAACACGATCTTCA 57.509 32.000 0.00 0.00 38.69 3.02
2585 11603 7.672983 ACAACATAAAGAACACGATCTTCAT 57.327 32.000 0.00 0.00 38.69 2.57
2586 11604 7.743104 ACAACATAAAGAACACGATCTTCATC 58.257 34.615 0.00 0.00 38.69 2.92
2596 11614 2.723124 GATCTTCATCGAGCTCCTCC 57.277 55.000 8.47 0.00 0.00 4.30
2597 11615 2.238521 GATCTTCATCGAGCTCCTCCT 58.761 52.381 8.47 0.00 0.00 3.69
2598 11616 1.397672 TCTTCATCGAGCTCCTCCTG 58.602 55.000 8.47 0.68 0.00 3.86
2599 11617 1.064389 TCTTCATCGAGCTCCTCCTGA 60.064 52.381 8.47 3.21 0.00 3.86
2600 11618 1.337703 CTTCATCGAGCTCCTCCTGAG 59.662 57.143 8.47 0.00 44.47 3.35
2608 11626 3.547567 CTCCTCCTGAGCTTGGTTG 57.452 57.895 6.60 2.44 33.47 3.77
2609 11627 0.676151 CTCCTCCTGAGCTTGGTTGC 60.676 60.000 6.60 0.00 33.47 4.17
2610 11628 2.037136 CCTCCTGAGCTTGGTTGCG 61.037 63.158 6.60 0.00 38.13 4.85
2611 11629 1.302033 CTCCTGAGCTTGGTTGCGT 60.302 57.895 6.60 0.00 38.13 5.24
2612 11630 1.294659 CTCCTGAGCTTGGTTGCGTC 61.295 60.000 6.60 0.00 38.13 5.19
2613 11631 1.597854 CCTGAGCTTGGTTGCGTCA 60.598 57.895 0.00 0.00 38.13 4.35
2614 11632 0.957395 CCTGAGCTTGGTTGCGTCAT 60.957 55.000 0.00 0.00 38.13 3.06
2615 11633 0.445436 CTGAGCTTGGTTGCGTCATC 59.555 55.000 0.00 0.00 38.13 2.92
2616 11634 0.035317 TGAGCTTGGTTGCGTCATCT 59.965 50.000 0.00 0.00 38.13 2.90
2617 11635 0.445436 GAGCTTGGTTGCGTCATCTG 59.555 55.000 0.00 0.00 38.13 2.90
2618 11636 1.154150 GCTTGGTTGCGTCATCTGC 60.154 57.895 0.00 0.00 0.00 4.26
2619 11637 1.855213 GCTTGGTTGCGTCATCTGCA 61.855 55.000 0.00 0.00 41.38 4.41
2620 11638 0.806868 CTTGGTTGCGTCATCTGCAT 59.193 50.000 0.00 0.00 42.84 3.96
2621 11639 0.522626 TTGGTTGCGTCATCTGCATG 59.477 50.000 0.00 0.00 42.84 4.06
2622 11640 1.307355 TGGTTGCGTCATCTGCATGG 61.307 55.000 0.00 0.00 42.84 3.66
2623 11641 1.026182 GGTTGCGTCATCTGCATGGA 61.026 55.000 0.00 0.00 42.84 3.41
2624 11642 0.097674 GTTGCGTCATCTGCATGGAC 59.902 55.000 0.00 0.00 42.84 4.02
2625 11643 0.036105 TTGCGTCATCTGCATGGACT 60.036 50.000 9.83 0.00 42.84 3.85
2626 11644 0.460811 TGCGTCATCTGCATGGACTC 60.461 55.000 9.83 4.06 37.44 3.36
2627 11645 0.460811 GCGTCATCTGCATGGACTCA 60.461 55.000 9.83 0.00 0.00 3.41
2628 11646 1.809271 GCGTCATCTGCATGGACTCAT 60.809 52.381 9.83 0.00 0.00 2.90
2629 11647 2.133553 CGTCATCTGCATGGACTCATC 58.866 52.381 9.83 0.00 0.00 2.92
2630 11648 2.133553 GTCATCTGCATGGACTCATCG 58.866 52.381 0.00 0.00 0.00 3.84
2631 11649 1.069668 TCATCTGCATGGACTCATCGG 59.930 52.381 0.00 0.00 0.00 4.18
2632 11650 0.250209 ATCTGCATGGACTCATCGGC 60.250 55.000 0.00 0.00 0.00 5.54
2633 11651 1.153309 CTGCATGGACTCATCGGCA 60.153 57.895 0.00 0.00 33.24 5.69
2634 11652 1.434622 CTGCATGGACTCATCGGCAC 61.435 60.000 0.00 0.00 31.67 5.01
2635 11653 2.182842 GCATGGACTCATCGGCACC 61.183 63.158 0.00 0.00 0.00 5.01
2636 11654 1.524002 CATGGACTCATCGGCACCT 59.476 57.895 0.00 0.00 0.00 4.00
2637 11655 0.812811 CATGGACTCATCGGCACCTG 60.813 60.000 0.00 0.00 0.00 4.00
2638 11656 2.512515 GGACTCATCGGCACCTGC 60.513 66.667 0.00 0.00 41.14 4.85
2639 11657 2.265739 GACTCATCGGCACCTGCA 59.734 61.111 0.00 0.00 44.36 4.41
2640 11658 1.375908 GACTCATCGGCACCTGCAA 60.376 57.895 0.00 0.00 44.36 4.08
2641 11659 0.955428 GACTCATCGGCACCTGCAAA 60.955 55.000 0.00 0.00 44.36 3.68
2642 11660 1.237285 ACTCATCGGCACCTGCAAAC 61.237 55.000 0.00 0.00 44.36 2.93
2643 11661 0.957395 CTCATCGGCACCTGCAAACT 60.957 55.000 0.00 0.00 44.36 2.66
2644 11662 1.210931 CATCGGCACCTGCAAACTG 59.789 57.895 0.00 0.00 44.36 3.16
2645 11663 1.973281 ATCGGCACCTGCAAACTGG 60.973 57.895 0.00 0.00 44.36 4.00
2647 11665 2.489275 CGGCACCTGCAAACTGGTT 61.489 57.895 0.00 0.00 45.13 3.67
2648 11666 1.822615 GGCACCTGCAAACTGGTTT 59.177 52.632 0.00 0.00 45.13 3.27
2649 11667 0.177836 GGCACCTGCAAACTGGTTTT 59.822 50.000 0.00 0.00 45.13 2.43
2650 11668 1.289276 GCACCTGCAAACTGGTTTTG 58.711 50.000 0.00 0.00 45.13 2.44
2651 11669 1.938625 CACCTGCAAACTGGTTTTGG 58.061 50.000 0.00 2.94 45.13 3.28
2652 11670 1.480137 CACCTGCAAACTGGTTTTGGA 59.520 47.619 12.90 0.00 45.13 3.53
2653 11671 2.093764 CACCTGCAAACTGGTTTTGGAA 60.094 45.455 12.90 0.00 44.13 3.53
2654 11672 2.168313 ACCTGCAAACTGGTTTTGGAAG 59.832 45.455 12.90 2.37 44.13 3.46
2655 11673 2.168313 CCTGCAAACTGGTTTTGGAAGT 59.832 45.455 0.00 0.00 44.13 3.01
2656 11674 3.383185 CCTGCAAACTGGTTTTGGAAGTA 59.617 43.478 0.00 0.00 44.13 2.24
2657 11675 4.039124 CCTGCAAACTGGTTTTGGAAGTAT 59.961 41.667 0.00 0.00 44.13 2.12
2658 11676 5.195001 TGCAAACTGGTTTTGGAAGTATC 57.805 39.130 0.00 0.00 42.09 2.24
2659 11677 4.892934 TGCAAACTGGTTTTGGAAGTATCT 59.107 37.500 0.00 0.00 42.09 1.98
2660 11678 5.221224 TGCAAACTGGTTTTGGAAGTATCTG 60.221 40.000 0.00 0.00 42.09 2.90
2661 11679 5.221244 GCAAACTGGTTTTGGAAGTATCTGT 60.221 40.000 0.00 0.00 44.34 3.41
2662 11680 6.208644 CAAACTGGTTTTGGAAGTATCTGTG 58.791 40.000 0.00 0.00 40.98 3.66
2663 11681 5.304686 ACTGGTTTTGGAAGTATCTGTGA 57.695 39.130 0.00 0.00 0.00 3.58
2664 11682 5.308825 ACTGGTTTTGGAAGTATCTGTGAG 58.691 41.667 0.00 0.00 0.00 3.51
2665 11683 4.072131 TGGTTTTGGAAGTATCTGTGAGC 58.928 43.478 0.00 0.00 0.00 4.26
2666 11684 3.440522 GGTTTTGGAAGTATCTGTGAGCC 59.559 47.826 0.00 0.00 0.00 4.70
2667 11685 4.072131 GTTTTGGAAGTATCTGTGAGCCA 58.928 43.478 0.00 0.00 0.00 4.75
2668 11686 3.334583 TTGGAAGTATCTGTGAGCCAC 57.665 47.619 0.00 0.00 34.56 5.01
2669 11687 2.256306 TGGAAGTATCTGTGAGCCACA 58.744 47.619 7.63 7.63 42.45 4.17
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
3 4 2.129146 ACACACTCGGAACCGACCA 61.129 57.895 12.04 0.00 44.01 4.02
98 2944 0.762418 AAACAGTGATGGGTCCGTCA 59.238 50.000 7.76 7.76 39.38 4.35
146 5128 1.631181 GGATTTAAGGGGGAGGAGGGT 60.631 57.143 0.00 0.00 0.00 4.34
200 5392 1.879380 CAACGAGGCAAACCATCTCAA 59.121 47.619 0.00 0.00 39.06 3.02
314 5508 4.155280 CCTTTTGTTCGTGGAATCGGTATT 59.845 41.667 0.00 0.00 0.00 1.89
318 5512 1.199097 CCCTTTTGTTCGTGGAATCGG 59.801 52.381 0.00 0.00 0.00 4.18
321 5515 1.339929 GCACCCTTTTGTTCGTGGAAT 59.660 47.619 0.00 0.00 0.00 3.01
399 5594 0.032714 GGGAGGGGACTAGTAACCGT 60.033 60.000 10.17 10.17 44.43 4.83
587 7205 2.036571 GGGAACCGCCGAAAATCGT 61.037 57.895 0.00 0.00 40.86 3.73
651 7269 2.505407 TGGATCCGACAAGACCAATGAT 59.495 45.455 7.39 0.00 0.00 2.45
692 7310 3.367703 GGAAATACCTCGTGAAGAACCGA 60.368 47.826 0.00 0.00 35.41 4.69
717 7335 5.187186 ACCGATTTATCACACACTAGGAACT 59.813 40.000 0.00 0.00 46.37 3.01
723 7341 8.471609 TCTGAATAACCGATTTATCACACACTA 58.528 33.333 0.00 0.00 29.39 2.74
767 7385 8.836413 CATTTAAGCCTAGTCGATTCCATTTTA 58.164 33.333 0.00 0.00 0.00 1.52
1510 8176 1.007038 TAGAAACGCAACGAGCCGT 60.007 52.632 0.00 0.00 43.97 5.68
1734 8720 1.194547 GCACCATACAACACTCACACG 59.805 52.381 0.00 0.00 0.00 4.49
1946 8933 1.758936 TGGATACGGTGATCACGAGT 58.241 50.000 23.05 23.05 42.51 4.18
1992 8979 4.961511 AAACGCTCGCACGCTCCA 62.962 61.111 0.00 0.00 36.19 3.86
2079 9075 4.235360 GAGCGTACACAGTGAATACAGTT 58.765 43.478 7.81 0.00 0.00 3.16
2089 9085 2.732282 CGATGACATGAGCGTACACAGT 60.732 50.000 0.00 0.00 0.00 3.55
2107 9103 1.153745 GTGCGGCAAGTCTCTCGAT 60.154 57.895 3.23 0.00 0.00 3.59
2179 11180 0.182061 CATGTAGCCAGCCAGACCAT 59.818 55.000 0.00 0.00 0.00 3.55
2230 11248 2.248835 GGTTACACACAAGCGCCGT 61.249 57.895 2.29 0.00 0.00 5.68
2264 11282 6.091849 GCTATAGTCGTATCGAGGATGTTACA 59.908 42.308 0.84 0.00 36.23 2.41
2265 11283 6.313411 AGCTATAGTCGTATCGAGGATGTTAC 59.687 42.308 0.84 0.00 36.23 2.50
2266 11284 6.404708 AGCTATAGTCGTATCGAGGATGTTA 58.595 40.000 0.84 0.00 36.23 2.41
2267 11285 5.247084 AGCTATAGTCGTATCGAGGATGTT 58.753 41.667 0.84 0.00 36.23 2.71
2268 11286 4.834534 AGCTATAGTCGTATCGAGGATGT 58.165 43.478 0.84 0.00 36.23 3.06
2269 11287 4.271533 GGAGCTATAGTCGTATCGAGGATG 59.728 50.000 0.84 0.00 36.23 3.51
2270 11288 4.444536 GGAGCTATAGTCGTATCGAGGAT 58.555 47.826 0.84 0.00 36.23 3.24
2271 11289 3.369261 GGGAGCTATAGTCGTATCGAGGA 60.369 52.174 0.84 0.00 36.23 3.71
2272 11290 2.937799 GGGAGCTATAGTCGTATCGAGG 59.062 54.545 0.84 0.00 36.23 4.63
2273 11291 3.371591 GTGGGAGCTATAGTCGTATCGAG 59.628 52.174 0.84 0.00 36.23 4.04
2274 11292 3.332919 GTGGGAGCTATAGTCGTATCGA 58.667 50.000 0.84 0.00 0.00 3.59
2275 11293 2.093941 CGTGGGAGCTATAGTCGTATCG 59.906 54.545 0.84 0.00 0.00 2.92
2276 11294 3.072944 ACGTGGGAGCTATAGTCGTATC 58.927 50.000 0.84 0.00 0.00 2.24
2277 11295 2.812591 CACGTGGGAGCTATAGTCGTAT 59.187 50.000 7.95 0.00 0.00 3.06
2278 11296 2.216046 CACGTGGGAGCTATAGTCGTA 58.784 52.381 7.95 0.00 0.00 3.43
2279 11297 1.022735 CACGTGGGAGCTATAGTCGT 58.977 55.000 7.95 0.00 0.00 4.34
2280 11298 1.002684 GACACGTGGGAGCTATAGTCG 60.003 57.143 21.57 0.00 0.00 4.18
2281 11299 1.002684 CGACACGTGGGAGCTATAGTC 60.003 57.143 21.57 2.91 0.00 2.59
2282 11300 1.022735 CGACACGTGGGAGCTATAGT 58.977 55.000 21.57 0.00 0.00 2.12
2283 11301 1.264557 CTCGACACGTGGGAGCTATAG 59.735 57.143 21.57 0.00 0.00 1.31
2284 11302 1.306148 CTCGACACGTGGGAGCTATA 58.694 55.000 21.57 0.00 0.00 1.31
2285 11303 1.384989 CCTCGACACGTGGGAGCTAT 61.385 60.000 25.04 3.08 36.95 2.97
2286 11304 2.044555 CCTCGACACGTGGGAGCTA 61.045 63.158 25.04 4.72 36.95 3.32
2287 11305 3.374402 CCTCGACACGTGGGAGCT 61.374 66.667 25.04 4.48 36.95 4.09
2289 11307 3.680786 TGCCTCGACACGTGGGAG 61.681 66.667 24.04 24.04 40.31 4.30
2290 11308 3.986006 GTGCCTCGACACGTGGGA 61.986 66.667 21.57 15.34 40.31 4.37
2299 11317 1.085091 GTCTCTAAGTCGTGCCTCGA 58.915 55.000 0.00 0.00 46.83 4.04
2300 11318 0.803117 TGTCTCTAAGTCGTGCCTCG 59.197 55.000 0.00 0.00 41.41 4.63
2301 11319 4.634184 TTATGTCTCTAAGTCGTGCCTC 57.366 45.455 0.00 0.00 0.00 4.70
2302 11320 4.261238 CGATTATGTCTCTAAGTCGTGCCT 60.261 45.833 0.00 0.00 0.00 4.75
2303 11321 3.975670 CGATTATGTCTCTAAGTCGTGCC 59.024 47.826 0.00 0.00 0.00 5.01
2304 11322 3.422546 GCGATTATGTCTCTAAGTCGTGC 59.577 47.826 0.00 0.00 0.00 5.34
2305 11323 4.598062 TGCGATTATGTCTCTAAGTCGTG 58.402 43.478 0.00 0.00 0.00 4.35
2306 11324 4.895224 TGCGATTATGTCTCTAAGTCGT 57.105 40.909 0.00 0.00 0.00 4.34
2307 11325 5.915196 TCAATGCGATTATGTCTCTAAGTCG 59.085 40.000 0.00 0.00 0.00 4.18
2308 11326 7.568497 GCTTCAATGCGATTATGTCTCTAAGTC 60.568 40.741 0.00 0.00 0.00 3.01
2309 11327 6.201806 GCTTCAATGCGATTATGTCTCTAAGT 59.798 38.462 0.00 0.00 0.00 2.24
2310 11328 6.201615 TGCTTCAATGCGATTATGTCTCTAAG 59.798 38.462 0.00 0.00 35.36 2.18
2311 11329 6.048509 TGCTTCAATGCGATTATGTCTCTAA 58.951 36.000 0.00 0.00 35.36 2.10
2312 11330 5.600696 TGCTTCAATGCGATTATGTCTCTA 58.399 37.500 0.00 0.00 35.36 2.43
2313 11331 4.445453 TGCTTCAATGCGATTATGTCTCT 58.555 39.130 0.00 0.00 35.36 3.10
2314 11332 4.801147 TGCTTCAATGCGATTATGTCTC 57.199 40.909 0.00 0.00 35.36 3.36
2315 11333 6.429078 ACATATGCTTCAATGCGATTATGTCT 59.571 34.615 1.58 0.00 34.30 3.41
2316 11334 6.605849 ACATATGCTTCAATGCGATTATGTC 58.394 36.000 1.58 0.00 34.30 3.06
2317 11335 6.564709 ACATATGCTTCAATGCGATTATGT 57.435 33.333 1.58 0.00 34.44 2.29
2318 11336 5.731263 CGACATATGCTTCAATGCGATTATG 59.269 40.000 1.58 0.00 35.36 1.90
2319 11337 5.672073 GCGACATATGCTTCAATGCGATTAT 60.672 40.000 1.58 0.00 35.36 1.28
2320 11338 4.377328 GCGACATATGCTTCAATGCGATTA 60.377 41.667 1.58 0.00 35.36 1.75
2321 11339 3.607775 GCGACATATGCTTCAATGCGATT 60.608 43.478 1.58 0.00 35.36 3.34
2322 11340 2.096069 GCGACATATGCTTCAATGCGAT 60.096 45.455 1.58 0.00 35.36 4.58
2323 11341 1.261354 GCGACATATGCTTCAATGCGA 59.739 47.619 1.58 0.00 35.36 5.10
2324 11342 1.003652 TGCGACATATGCTTCAATGCG 60.004 47.619 1.58 0.00 35.36 4.73
2325 11343 2.761392 TGCGACATATGCTTCAATGC 57.239 45.000 1.58 0.00 0.00 3.56
2326 11344 4.033019 CACTTGCGACATATGCTTCAATG 58.967 43.478 1.58 2.35 0.00 2.82
2327 11345 3.940852 TCACTTGCGACATATGCTTCAAT 59.059 39.130 1.58 0.00 0.00 2.57
2328 11346 3.333804 TCACTTGCGACATATGCTTCAA 58.666 40.909 1.58 3.56 0.00 2.69
2329 11347 2.931969 CTCACTTGCGACATATGCTTCA 59.068 45.455 1.58 0.00 0.00 3.02
2330 11348 2.286294 CCTCACTTGCGACATATGCTTC 59.714 50.000 1.58 0.00 0.00 3.86
2331 11349 2.283298 CCTCACTTGCGACATATGCTT 58.717 47.619 1.58 0.00 0.00 3.91
2332 11350 1.208052 ACCTCACTTGCGACATATGCT 59.792 47.619 1.58 0.00 0.00 3.79
2333 11351 1.656652 ACCTCACTTGCGACATATGC 58.343 50.000 1.58 0.00 0.00 3.14
2334 11352 5.292765 AGATTACCTCACTTGCGACATATG 58.707 41.667 0.00 0.00 0.00 1.78
2335 11353 5.537300 AGATTACCTCACTTGCGACATAT 57.463 39.130 0.00 0.00 0.00 1.78
2336 11354 5.105513 TGAAGATTACCTCACTTGCGACATA 60.106 40.000 0.00 0.00 0.00 2.29
2337 11355 3.895232 AGATTACCTCACTTGCGACAT 57.105 42.857 0.00 0.00 0.00 3.06
2338 11356 3.006430 TGAAGATTACCTCACTTGCGACA 59.994 43.478 0.00 0.00 0.00 4.35
2339 11357 3.368236 GTGAAGATTACCTCACTTGCGAC 59.632 47.826 0.00 0.00 0.00 5.19
2340 11358 3.006430 TGTGAAGATTACCTCACTTGCGA 59.994 43.478 4.07 0.00 34.51 5.10
2341 11359 3.123621 GTGTGAAGATTACCTCACTTGCG 59.876 47.826 4.07 0.00 34.51 4.85
2342 11360 4.065088 TGTGTGAAGATTACCTCACTTGC 58.935 43.478 4.07 0.00 34.51 4.01
2343 11361 5.049405 GGTTGTGTGAAGATTACCTCACTTG 60.049 44.000 4.07 0.00 34.51 3.16
2344 11362 5.063880 GGTTGTGTGAAGATTACCTCACTT 58.936 41.667 4.07 0.00 34.51 3.16
2345 11363 4.505039 GGGTTGTGTGAAGATTACCTCACT 60.505 45.833 4.07 0.00 34.51 3.41
2346 11364 3.751698 GGGTTGTGTGAAGATTACCTCAC 59.248 47.826 0.00 0.00 0.00 3.51
2347 11365 3.392947 TGGGTTGTGTGAAGATTACCTCA 59.607 43.478 0.00 0.00 0.00 3.86
2348 11366 4.015872 TGGGTTGTGTGAAGATTACCTC 57.984 45.455 0.00 0.00 0.00 3.85
2349 11367 4.202567 ACATGGGTTGTGTGAAGATTACCT 60.203 41.667 0.00 0.00 37.11 3.08
2350 11368 4.079253 ACATGGGTTGTGTGAAGATTACC 58.921 43.478 0.00 0.00 37.11 2.85
2351 11369 6.811253 TTACATGGGTTGTGTGAAGATTAC 57.189 37.500 0.00 0.00 39.48 1.89
2352 11370 8.103935 TGTATTACATGGGTTGTGTGAAGATTA 58.896 33.333 0.00 0.00 39.48 1.75
2353 11371 6.945435 TGTATTACATGGGTTGTGTGAAGATT 59.055 34.615 0.00 0.00 39.48 2.40
2354 11372 6.480763 TGTATTACATGGGTTGTGTGAAGAT 58.519 36.000 0.00 0.00 39.48 2.40
2355 11373 5.870706 TGTATTACATGGGTTGTGTGAAGA 58.129 37.500 0.00 0.00 39.48 2.87
2356 11374 6.757897 ATGTATTACATGGGTTGTGTGAAG 57.242 37.500 8.51 0.00 37.45 3.02
2357 11375 7.338196 CCTTATGTATTACATGGGTTGTGTGAA 59.662 37.037 17.68 1.51 39.53 3.18
2358 11376 6.826231 CCTTATGTATTACATGGGTTGTGTGA 59.174 38.462 17.68 0.00 39.53 3.58
2359 11377 6.039270 CCCTTATGTATTACATGGGTTGTGTG 59.961 42.308 17.68 4.59 39.53 3.82
2360 11378 6.069323 TCCCTTATGTATTACATGGGTTGTGT 60.069 38.462 22.47 0.74 40.71 3.72
2361 11379 6.361433 TCCCTTATGTATTACATGGGTTGTG 58.639 40.000 22.47 11.74 40.71 3.33
2362 11380 6.584471 TCCCTTATGTATTACATGGGTTGT 57.416 37.500 22.47 1.91 40.71 3.32
2363 11381 7.777910 TCTTTCCCTTATGTATTACATGGGTTG 59.222 37.037 22.47 16.30 40.71 3.77
2364 11382 7.878495 TCTTTCCCTTATGTATTACATGGGTT 58.122 34.615 22.47 3.08 40.71 4.11
2365 11383 7.349859 TCTCTTTCCCTTATGTATTACATGGGT 59.650 37.037 22.47 3.38 40.71 4.51
2366 11384 7.745717 TCTCTTTCCCTTATGTATTACATGGG 58.254 38.462 19.48 19.48 41.04 4.00
2376 11394 8.432805 CCAACTATGTATCTCTTTCCCTTATGT 58.567 37.037 0.00 0.00 0.00 2.29
2377 11395 7.389053 GCCAACTATGTATCTCTTTCCCTTATG 59.611 40.741 0.00 0.00 0.00 1.90
2378 11396 7.293535 AGCCAACTATGTATCTCTTTCCCTTAT 59.706 37.037 0.00 0.00 0.00 1.73
2379 11397 6.615726 AGCCAACTATGTATCTCTTTCCCTTA 59.384 38.462 0.00 0.00 0.00 2.69
2380 11398 5.430089 AGCCAACTATGTATCTCTTTCCCTT 59.570 40.000 0.00 0.00 0.00 3.95
2381 11399 4.971924 AGCCAACTATGTATCTCTTTCCCT 59.028 41.667 0.00 0.00 0.00 4.20
2382 11400 5.297569 AGCCAACTATGTATCTCTTTCCC 57.702 43.478 0.00 0.00 0.00 3.97
2383 11401 7.272978 TGTAAGCCAACTATGTATCTCTTTCC 58.727 38.462 0.00 0.00 0.00 3.13
2384 11402 8.718102 TTGTAAGCCAACTATGTATCTCTTTC 57.282 34.615 0.00 0.00 0.00 2.62
2385 11403 9.331282 GATTGTAAGCCAACTATGTATCTCTTT 57.669 33.333 0.00 0.00 35.44 2.52
2386 11404 7.653713 CGATTGTAAGCCAACTATGTATCTCTT 59.346 37.037 0.00 0.00 35.44 2.85
2387 11405 7.148641 CGATTGTAAGCCAACTATGTATCTCT 58.851 38.462 0.00 0.00 35.44 3.10
2388 11406 6.128795 GCGATTGTAAGCCAACTATGTATCTC 60.129 42.308 0.00 0.00 35.44 2.75
2389 11407 5.696724 GCGATTGTAAGCCAACTATGTATCT 59.303 40.000 0.00 0.00 35.44 1.98
2390 11408 5.916969 GCGATTGTAAGCCAACTATGTATC 58.083 41.667 0.00 0.00 35.44 2.24
2391 11409 5.924475 GCGATTGTAAGCCAACTATGTAT 57.076 39.130 0.00 0.00 35.44 2.29
2402 11420 1.804151 TGTGAAGTGGCGATTGTAAGC 59.196 47.619 0.00 0.00 0.00 3.09
2403 11421 5.794687 TTATGTGAAGTGGCGATTGTAAG 57.205 39.130 0.00 0.00 0.00 2.34
2404 11422 6.751514 AATTATGTGAAGTGGCGATTGTAA 57.248 33.333 0.00 0.00 0.00 2.41
2405 11423 6.819146 TGTAATTATGTGAAGTGGCGATTGTA 59.181 34.615 0.00 0.00 0.00 2.41
2406 11424 5.645929 TGTAATTATGTGAAGTGGCGATTGT 59.354 36.000 0.00 0.00 0.00 2.71
2407 11425 6.117911 TGTAATTATGTGAAGTGGCGATTG 57.882 37.500 0.00 0.00 0.00 2.67
2408 11426 6.542005 TCATGTAATTATGTGAAGTGGCGATT 59.458 34.615 0.00 0.00 0.00 3.34
2409 11427 6.054941 TCATGTAATTATGTGAAGTGGCGAT 58.945 36.000 0.00 0.00 0.00 4.58
2410 11428 5.423886 TCATGTAATTATGTGAAGTGGCGA 58.576 37.500 0.00 0.00 0.00 5.54
2411 11429 5.733226 TCATGTAATTATGTGAAGTGGCG 57.267 39.130 0.00 0.00 0.00 5.69
2439 11457 9.673454 CCATGAGTGTATTTGATTGATGTAATG 57.327 33.333 0.00 0.00 0.00 1.90
2440 11458 9.412460 ACCATGAGTGTATTTGATTGATGTAAT 57.588 29.630 0.00 0.00 0.00 1.89
2441 11459 8.806429 ACCATGAGTGTATTTGATTGATGTAA 57.194 30.769 0.00 0.00 0.00 2.41
2442 11460 7.498900 GGACCATGAGTGTATTTGATTGATGTA 59.501 37.037 0.00 0.00 0.00 2.29
2443 11461 6.319658 GGACCATGAGTGTATTTGATTGATGT 59.680 38.462 0.00 0.00 0.00 3.06
2444 11462 6.512253 CGGACCATGAGTGTATTTGATTGATG 60.512 42.308 0.00 0.00 0.00 3.07
2445 11463 5.528690 CGGACCATGAGTGTATTTGATTGAT 59.471 40.000 0.00 0.00 0.00 2.57
2446 11464 4.875536 CGGACCATGAGTGTATTTGATTGA 59.124 41.667 0.00 0.00 0.00 2.57
2447 11465 4.875536 TCGGACCATGAGTGTATTTGATTG 59.124 41.667 0.00 0.00 0.00 2.67
2448 11466 4.876107 GTCGGACCATGAGTGTATTTGATT 59.124 41.667 0.00 0.00 0.00 2.57
2449 11467 4.162320 AGTCGGACCATGAGTGTATTTGAT 59.838 41.667 4.14 0.00 0.00 2.57
2450 11468 3.513912 AGTCGGACCATGAGTGTATTTGA 59.486 43.478 4.14 0.00 0.00 2.69
2451 11469 3.861840 AGTCGGACCATGAGTGTATTTG 58.138 45.455 4.14 0.00 0.00 2.32
2452 11470 4.439700 CGTAGTCGGACCATGAGTGTATTT 60.440 45.833 4.14 0.00 0.00 1.40
2453 11471 3.066342 CGTAGTCGGACCATGAGTGTATT 59.934 47.826 4.14 0.00 0.00 1.89
2454 11472 2.617308 CGTAGTCGGACCATGAGTGTAT 59.383 50.000 4.14 0.00 0.00 2.29
2455 11473 2.011947 CGTAGTCGGACCATGAGTGTA 58.988 52.381 4.14 0.00 0.00 2.90
2456 11474 0.809385 CGTAGTCGGACCATGAGTGT 59.191 55.000 4.14 0.00 0.00 3.55
2457 11475 3.624305 CGTAGTCGGACCATGAGTG 57.376 57.895 4.14 0.00 0.00 3.51
2468 11486 6.470557 TCTTTTATTTTGGTTCCGTAGTCG 57.529 37.500 0.00 0.00 0.00 4.18
2469 11487 8.091385 TCTTCTTTTATTTTGGTTCCGTAGTC 57.909 34.615 0.00 0.00 0.00 2.59
2470 11488 8.347771 GTTCTTCTTTTATTTTGGTTCCGTAGT 58.652 33.333 0.00 0.00 0.00 2.73
2471 11489 7.806487 GGTTCTTCTTTTATTTTGGTTCCGTAG 59.194 37.037 0.00 0.00 0.00 3.51
2472 11490 7.255555 GGGTTCTTCTTTTATTTTGGTTCCGTA 60.256 37.037 0.00 0.00 0.00 4.02
2473 11491 6.461927 GGGTTCTTCTTTTATTTTGGTTCCGT 60.462 38.462 0.00 0.00 0.00 4.69
2474 11492 5.924254 GGGTTCTTCTTTTATTTTGGTTCCG 59.076 40.000 0.00 0.00 0.00 4.30
2475 11493 6.183361 TGGGGTTCTTCTTTTATTTTGGTTCC 60.183 38.462 0.00 0.00 0.00 3.62
2476 11494 6.822442 TGGGGTTCTTCTTTTATTTTGGTTC 58.178 36.000 0.00 0.00 0.00 3.62
2477 11495 6.816616 TGGGGTTCTTCTTTTATTTTGGTT 57.183 33.333 0.00 0.00 0.00 3.67
2478 11496 6.816616 TTGGGGTTCTTCTTTTATTTTGGT 57.183 33.333 0.00 0.00 0.00 3.67
2479 11497 7.308529 GCATTTGGGGTTCTTCTTTTATTTTGG 60.309 37.037 0.00 0.00 0.00 3.28
2480 11498 7.571059 CGCATTTGGGGTTCTTCTTTTATTTTG 60.571 37.037 0.00 0.00 0.00 2.44
2481 11499 6.426633 CGCATTTGGGGTTCTTCTTTTATTTT 59.573 34.615 0.00 0.00 0.00 1.82
2482 11500 5.931724 CGCATTTGGGGTTCTTCTTTTATTT 59.068 36.000 0.00 0.00 0.00 1.40
2483 11501 5.245075 TCGCATTTGGGGTTCTTCTTTTATT 59.755 36.000 0.00 0.00 0.00 1.40
2484 11502 4.770010 TCGCATTTGGGGTTCTTCTTTTAT 59.230 37.500 0.00 0.00 0.00 1.40
2485 11503 4.022676 GTCGCATTTGGGGTTCTTCTTTTA 60.023 41.667 0.00 0.00 0.00 1.52
2486 11504 2.962421 TCGCATTTGGGGTTCTTCTTTT 59.038 40.909 0.00 0.00 0.00 2.27
2487 11505 2.296190 GTCGCATTTGGGGTTCTTCTTT 59.704 45.455 0.00 0.00 0.00 2.52
2488 11506 1.886542 GTCGCATTTGGGGTTCTTCTT 59.113 47.619 0.00 0.00 0.00 2.52
2489 11507 1.202879 TGTCGCATTTGGGGTTCTTCT 60.203 47.619 0.00 0.00 0.00 2.85
2490 11508 1.068541 GTGTCGCATTTGGGGTTCTTC 60.069 52.381 0.00 0.00 0.00 2.87
2491 11509 0.958822 GTGTCGCATTTGGGGTTCTT 59.041 50.000 0.00 0.00 0.00 2.52
2492 11510 1.234615 CGTGTCGCATTTGGGGTTCT 61.235 55.000 0.00 0.00 0.00 3.01
2493 11511 1.209127 CGTGTCGCATTTGGGGTTC 59.791 57.895 0.00 0.00 0.00 3.62
2494 11512 2.265182 CCGTGTCGCATTTGGGGTT 61.265 57.895 0.00 0.00 0.00 4.11
2495 11513 2.671619 CCGTGTCGCATTTGGGGT 60.672 61.111 0.00 0.00 0.00 4.95
2496 11514 2.671619 ACCGTGTCGCATTTGGGG 60.672 61.111 0.00 0.00 0.00 4.96
2497 11515 2.686816 GGACCGTGTCGCATTTGGG 61.687 63.158 0.00 0.00 32.65 4.12
2498 11516 2.686816 GGGACCGTGTCGCATTTGG 61.687 63.158 13.59 0.00 43.51 3.28
2499 11517 2.686816 GGGGACCGTGTCGCATTTG 61.687 63.158 18.06 0.00 45.38 2.32
2500 11518 2.359478 GGGGACCGTGTCGCATTT 60.359 61.111 18.06 0.00 45.38 2.32
2512 11530 3.078836 TTGGGGTCGATCGGGGAC 61.079 66.667 16.41 6.05 0.00 4.46
2513 11531 3.078836 GTTGGGGTCGATCGGGGA 61.079 66.667 16.41 0.00 0.00 4.81
2514 11532 3.081409 AGTTGGGGTCGATCGGGG 61.081 66.667 16.41 0.00 0.00 5.73
2515 11533 2.186903 CAGTTGGGGTCGATCGGG 59.813 66.667 16.41 0.00 0.00 5.14
2516 11534 2.186903 CCAGTTGGGGTCGATCGG 59.813 66.667 16.41 0.00 0.00 4.18
2526 11544 0.036010 CAGTAGTGGAGCCCAGTTGG 60.036 60.000 6.85 0.00 38.30 3.77
2527 11545 0.976641 TCAGTAGTGGAGCCCAGTTG 59.023 55.000 6.85 1.82 38.30 3.16
2528 11546 1.834263 GATCAGTAGTGGAGCCCAGTT 59.166 52.381 6.85 0.00 38.30 3.16
2529 11547 1.273267 TGATCAGTAGTGGAGCCCAGT 60.273 52.381 6.76 6.76 40.67 4.00
2530 11548 1.489481 TGATCAGTAGTGGAGCCCAG 58.511 55.000 0.00 0.00 32.34 4.45
2531 11549 1.555075 GTTGATCAGTAGTGGAGCCCA 59.445 52.381 0.00 0.00 0.00 5.36
2532 11550 1.834263 AGTTGATCAGTAGTGGAGCCC 59.166 52.381 0.00 0.00 0.00 5.19
2533 11551 3.954904 TCTAGTTGATCAGTAGTGGAGCC 59.045 47.826 11.85 0.00 30.99 4.70
2534 11552 5.344884 GTTCTAGTTGATCAGTAGTGGAGC 58.655 45.833 11.85 1.82 30.99 4.70
2535 11553 5.354513 TCGTTCTAGTTGATCAGTAGTGGAG 59.645 44.000 11.85 5.42 30.99 3.86
2536 11554 5.250982 TCGTTCTAGTTGATCAGTAGTGGA 58.749 41.667 11.85 0.48 30.99 4.02
2537 11555 5.562506 TCGTTCTAGTTGATCAGTAGTGG 57.437 43.478 11.85 0.00 30.99 4.00
2538 11556 6.861572 TGTTTCGTTCTAGTTGATCAGTAGTG 59.138 38.462 11.85 0.00 30.99 2.74
2539 11557 6.978338 TGTTTCGTTCTAGTTGATCAGTAGT 58.022 36.000 11.85 0.00 30.99 2.73
2540 11558 7.381408 TGTTGTTTCGTTCTAGTTGATCAGTAG 59.619 37.037 0.00 1.74 0.00 2.57
2541 11559 7.204604 TGTTGTTTCGTTCTAGTTGATCAGTA 58.795 34.615 0.00 0.00 0.00 2.74
2542 11560 6.046593 TGTTGTTTCGTTCTAGTTGATCAGT 58.953 36.000 0.00 0.00 0.00 3.41
2543 11561 6.525121 TGTTGTTTCGTTCTAGTTGATCAG 57.475 37.500 0.00 0.00 0.00 2.90
2544 11562 8.596271 TTATGTTGTTTCGTTCTAGTTGATCA 57.404 30.769 0.00 0.00 0.00 2.92
2545 11563 9.530129 CTTTATGTTGTTTCGTTCTAGTTGATC 57.470 33.333 0.00 0.00 0.00 2.92
2546 11564 9.268268 TCTTTATGTTGTTTCGTTCTAGTTGAT 57.732 29.630 0.00 0.00 0.00 2.57
2547 11565 8.651391 TCTTTATGTTGTTTCGTTCTAGTTGA 57.349 30.769 0.00 0.00 0.00 3.18
2548 11566 9.155053 GTTCTTTATGTTGTTTCGTTCTAGTTG 57.845 33.333 0.00 0.00 0.00 3.16
2549 11567 8.885722 TGTTCTTTATGTTGTTTCGTTCTAGTT 58.114 29.630 0.00 0.00 0.00 2.24
2550 11568 8.333186 GTGTTCTTTATGTTGTTTCGTTCTAGT 58.667 33.333 0.00 0.00 0.00 2.57
2551 11569 7.526186 CGTGTTCTTTATGTTGTTTCGTTCTAG 59.474 37.037 0.00 0.00 0.00 2.43
2552 11570 7.222417 TCGTGTTCTTTATGTTGTTTCGTTCTA 59.778 33.333 0.00 0.00 0.00 2.10
2553 11571 6.036300 TCGTGTTCTTTATGTTGTTTCGTTCT 59.964 34.615 0.00 0.00 0.00 3.01
2554 11572 6.186785 TCGTGTTCTTTATGTTGTTTCGTTC 58.813 36.000 0.00 0.00 0.00 3.95
2555 11573 6.109320 TCGTGTTCTTTATGTTGTTTCGTT 57.891 33.333 0.00 0.00 0.00 3.85
2556 11574 5.721876 TCGTGTTCTTTATGTTGTTTCGT 57.278 34.783 0.00 0.00 0.00 3.85
2557 11575 6.590357 AGATCGTGTTCTTTATGTTGTTTCG 58.410 36.000 0.00 0.00 0.00 3.46
2558 11576 8.067784 TGAAGATCGTGTTCTTTATGTTGTTTC 58.932 33.333 0.00 0.00 36.10 2.78
2559 11577 7.925993 TGAAGATCGTGTTCTTTATGTTGTTT 58.074 30.769 0.00 0.00 36.10 2.83
2560 11578 7.490962 TGAAGATCGTGTTCTTTATGTTGTT 57.509 32.000 0.00 0.00 36.10 2.83
2561 11579 7.411912 CGATGAAGATCGTGTTCTTTATGTTGT 60.412 37.037 3.52 0.00 45.43 3.32
2562 11580 6.896613 CGATGAAGATCGTGTTCTTTATGTTG 59.103 38.462 3.52 0.00 45.43 3.33
2563 11581 6.993878 CGATGAAGATCGTGTTCTTTATGTT 58.006 36.000 3.52 0.00 45.43 2.71
2564 11582 6.575083 CGATGAAGATCGTGTTCTTTATGT 57.425 37.500 3.52 0.00 45.43 2.29
2577 11595 2.030007 CAGGAGGAGCTCGATGAAGATC 60.030 54.545 7.83 0.00 0.00 2.75
2578 11596 1.962807 CAGGAGGAGCTCGATGAAGAT 59.037 52.381 7.83 0.00 0.00 2.40
2579 11597 1.064389 TCAGGAGGAGCTCGATGAAGA 60.064 52.381 7.83 0.00 28.67 2.87
2580 11598 1.337703 CTCAGGAGGAGCTCGATGAAG 59.662 57.143 7.83 0.00 36.69 3.02
2581 11599 1.397672 CTCAGGAGGAGCTCGATGAA 58.602 55.000 7.83 0.00 36.69 2.57
2582 11600 3.108292 CTCAGGAGGAGCTCGATGA 57.892 57.895 7.83 7.98 36.69 2.92
2590 11608 0.676151 GCAACCAAGCTCAGGAGGAG 60.676 60.000 11.80 0.00 46.93 3.69
2591 11609 1.376466 GCAACCAAGCTCAGGAGGA 59.624 57.895 11.80 0.00 0.00 3.71
2592 11610 2.037136 CGCAACCAAGCTCAGGAGG 61.037 63.158 11.80 4.74 0.00 4.30
2593 11611 1.294659 GACGCAACCAAGCTCAGGAG 61.295 60.000 11.80 5.37 0.00 3.69
2594 11612 1.301716 GACGCAACCAAGCTCAGGA 60.302 57.895 11.80 0.00 0.00 3.86
2595 11613 0.957395 ATGACGCAACCAAGCTCAGG 60.957 55.000 3.72 3.72 0.00 3.86
2596 11614 0.445436 GATGACGCAACCAAGCTCAG 59.555 55.000 0.00 0.00 0.00 3.35
2597 11615 0.035317 AGATGACGCAACCAAGCTCA 59.965 50.000 0.00 0.00 0.00 4.26
2598 11616 0.445436 CAGATGACGCAACCAAGCTC 59.555 55.000 0.00 0.00 0.00 4.09
2599 11617 1.580845 GCAGATGACGCAACCAAGCT 61.581 55.000 0.00 0.00 0.00 3.74
2600 11618 1.154150 GCAGATGACGCAACCAAGC 60.154 57.895 0.00 0.00 0.00 4.01
2601 11619 0.806868 ATGCAGATGACGCAACCAAG 59.193 50.000 0.00 0.00 43.84 3.61
2602 11620 0.522626 CATGCAGATGACGCAACCAA 59.477 50.000 0.00 0.00 43.84 3.67
2603 11621 1.307355 CCATGCAGATGACGCAACCA 61.307 55.000 0.00 0.00 43.84 3.67
2604 11622 1.026182 TCCATGCAGATGACGCAACC 61.026 55.000 0.00 0.00 43.84 3.77
2605 11623 0.097674 GTCCATGCAGATGACGCAAC 59.902 55.000 0.00 0.00 43.84 4.17
2606 11624 0.036105 AGTCCATGCAGATGACGCAA 60.036 50.000 0.00 0.00 43.84 4.85
2607 11625 0.460811 GAGTCCATGCAGATGACGCA 60.461 55.000 10.46 0.00 44.94 5.24
2608 11626 0.460811 TGAGTCCATGCAGATGACGC 60.461 55.000 8.99 8.99 0.00 5.19
2609 11627 2.133553 GATGAGTCCATGCAGATGACG 58.866 52.381 0.00 0.00 32.09 4.35
2610 11628 2.133553 CGATGAGTCCATGCAGATGAC 58.866 52.381 0.00 0.00 32.09 3.06
2611 11629 1.069668 CCGATGAGTCCATGCAGATGA 59.930 52.381 0.00 0.00 32.09 2.92
2612 11630 1.509703 CCGATGAGTCCATGCAGATG 58.490 55.000 0.00 0.00 32.09 2.90
2613 11631 0.250209 GCCGATGAGTCCATGCAGAT 60.250 55.000 0.00 0.00 32.09 2.90
2614 11632 1.144716 GCCGATGAGTCCATGCAGA 59.855 57.895 0.00 0.00 32.09 4.26
2615 11633 1.153309 TGCCGATGAGTCCATGCAG 60.153 57.895 0.00 0.00 30.96 4.41
2616 11634 1.450134 GTGCCGATGAGTCCATGCA 60.450 57.895 0.00 0.00 31.72 3.96
2617 11635 2.182842 GGTGCCGATGAGTCCATGC 61.183 63.158 0.00 0.00 32.09 4.06
2618 11636 0.812811 CAGGTGCCGATGAGTCCATG 60.813 60.000 0.00 0.00 32.09 3.66
2619 11637 1.524002 CAGGTGCCGATGAGTCCAT 59.476 57.895 0.00 0.00 35.29 3.41
2620 11638 2.981302 CAGGTGCCGATGAGTCCA 59.019 61.111 0.00 0.00 0.00 4.02
2621 11639 2.512515 GCAGGTGCCGATGAGTCC 60.513 66.667 0.00 0.00 34.31 3.85
2622 11640 0.955428 TTTGCAGGTGCCGATGAGTC 60.955 55.000 0.00 0.00 41.18 3.36
2623 11641 1.073025 TTTGCAGGTGCCGATGAGT 59.927 52.632 0.00 0.00 41.18 3.41
2624 11642 0.957395 AGTTTGCAGGTGCCGATGAG 60.957 55.000 0.00 0.00 41.18 2.90
2625 11643 1.073025 AGTTTGCAGGTGCCGATGA 59.927 52.632 0.00 0.00 41.18 2.92
2626 11644 1.210931 CAGTTTGCAGGTGCCGATG 59.789 57.895 0.00 0.00 41.18 3.84
2627 11645 1.973281 CCAGTTTGCAGGTGCCGAT 60.973 57.895 0.00 0.00 41.18 4.18
2628 11646 2.594303 CCAGTTTGCAGGTGCCGA 60.594 61.111 0.00 0.00 41.18 5.54
2629 11647 2.015227 AAACCAGTTTGCAGGTGCCG 62.015 55.000 0.00 0.00 41.18 5.69
2630 11648 0.177836 AAAACCAGTTTGCAGGTGCC 59.822 50.000 0.00 0.00 41.18 5.01
2631 11649 1.289276 CAAAACCAGTTTGCAGGTGC 58.711 50.000 0.00 0.00 40.25 5.01
2632 11650 1.480137 TCCAAAACCAGTTTGCAGGTG 59.520 47.619 0.00 0.00 44.57 4.00
2633 11651 1.859302 TCCAAAACCAGTTTGCAGGT 58.141 45.000 0.00 0.00 44.57 4.00
2634 11652 2.168313 ACTTCCAAAACCAGTTTGCAGG 59.832 45.455 0.00 0.65 44.57 4.85
2635 11653 3.525268 ACTTCCAAAACCAGTTTGCAG 57.475 42.857 0.00 0.00 44.57 4.41
2636 11654 4.892934 AGATACTTCCAAAACCAGTTTGCA 59.107 37.500 0.00 0.00 44.57 4.08
2637 11655 5.221244 ACAGATACTTCCAAAACCAGTTTGC 60.221 40.000 0.00 0.00 44.57 3.68
2638 11656 6.039270 TCACAGATACTTCCAAAACCAGTTTG 59.961 38.462 0.00 0.00 45.36 2.93
2639 11657 6.126409 TCACAGATACTTCCAAAACCAGTTT 58.874 36.000 0.00 0.00 0.00 2.66
2640 11658 5.690865 TCACAGATACTTCCAAAACCAGTT 58.309 37.500 0.00 0.00 0.00 3.16
2641 11659 5.304686 TCACAGATACTTCCAAAACCAGT 57.695 39.130 0.00 0.00 0.00 4.00
2642 11660 4.154918 GCTCACAGATACTTCCAAAACCAG 59.845 45.833 0.00 0.00 0.00 4.00
2643 11661 4.072131 GCTCACAGATACTTCCAAAACCA 58.928 43.478 0.00 0.00 0.00 3.67
2644 11662 3.440522 GGCTCACAGATACTTCCAAAACC 59.559 47.826 0.00 0.00 0.00 3.27
2645 11663 4.072131 TGGCTCACAGATACTTCCAAAAC 58.928 43.478 0.00 0.00 0.00 2.43
2646 11664 4.072131 GTGGCTCACAGATACTTCCAAAA 58.928 43.478 1.01 0.00 34.08 2.44
2647 11665 3.072330 TGTGGCTCACAGATACTTCCAAA 59.928 43.478 4.16 0.00 39.62 3.28
2648 11666 2.637382 TGTGGCTCACAGATACTTCCAA 59.363 45.455 4.16 0.00 39.62 3.53
2649 11667 2.256306 TGTGGCTCACAGATACTTCCA 58.744 47.619 4.16 0.00 39.62 3.53


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.