Multiple sequence alignment - TraesCS2A01G210400

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS2A01G210400 chr2A 100.000 5186 0 0 1 5186 194475529 194470344 0.000000e+00 9577
1 TraesCS2A01G210400 chr2A 97.636 423 9 1 15 436 81020686 81020264 0.000000e+00 725
2 TraesCS2A01G210400 chr2A 75.063 397 97 2 2678 3073 194129995 194129600 3.190000e-42 183
3 TraesCS2A01G210400 chr2A 73.537 393 93 10 2681 3069 72693433 72693818 7.000000e-29 139
4 TraesCS2A01G210400 chr2D 94.661 4252 160 35 680 4894 180141151 180136930 0.000000e+00 6532
5 TraesCS2A01G210400 chr2D 94.774 421 22 0 15 435 204144994 204145414 0.000000e+00 656
6 TraesCS2A01G210400 chr2D 93.764 433 25 2 5 436 53780897 53781328 0.000000e+00 649
7 TraesCS2A01G210400 chr2D 88.704 301 17 6 4903 5186 180136784 180136484 8.260000e-93 351
8 TraesCS2A01G210400 chr2D 95.187 187 7 2 442 627 180141716 180141531 1.410000e-75 294
9 TraesCS2A01G210400 chr2D 73.001 763 186 16 1714 2466 180327087 180326335 3.100000e-62 250
10 TraesCS2A01G210400 chr2D 75.063 397 97 2 2678 3073 179692135 179691740 3.190000e-42 183
11 TraesCS2A01G210400 chr2D 72.779 349 82 12 2729 3072 73323837 73323497 7.100000e-19 106
12 TraesCS2A01G210400 chr2B 95.223 3412 112 22 1518 4895 236807775 236804381 0.000000e+00 5350
13 TraesCS2A01G210400 chr2B 91.674 1105 42 19 448 1519 236808940 236807853 0.000000e+00 1485
14 TraesCS2A01G210400 chr2B 89.161 286 16 4 4903 5186 236804325 236804053 4.970000e-90 342
15 TraesCS2A01G210400 chr2B 78.284 373 79 2 2674 3045 798318173 798317802 6.710000e-59 239
16 TraesCS2A01G210400 chr2B 74.690 403 100 2 2678 3079 236527254 236526853 1.480000e-40 178
17 TraesCS2A01G210400 chr2B 73.048 397 96 10 2681 3073 110854154 110854543 4.210000e-26 130
18 TraesCS2A01G210400 chr3A 97.412 425 10 1 13 436 221915725 221916149 0.000000e+00 723
19 TraesCS2A01G210400 chr5A 97.375 419 11 0 15 433 552330387 552329969 0.000000e+00 713
20 TraesCS2A01G210400 chr7A 96.698 424 14 0 15 438 102490338 102489915 0.000000e+00 706
21 TraesCS2A01G210400 chr4A 96.682 422 13 1 15 436 88420011 88419591 0.000000e+00 701
22 TraesCS2A01G210400 chr6A 96.437 421 15 0 15 435 612294124 612293704 0.000000e+00 695
23 TraesCS2A01G210400 chr6A 94.774 421 22 0 15 435 593726182 593725762 0.000000e+00 656


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS2A01G210400 chr2A 194470344 194475529 5185 True 9577.000000 9577 100.000000 1 5186 1 chr2A.!!$R3 5185
1 TraesCS2A01G210400 chr2D 180136484 180141716 5232 True 2392.333333 6532 92.850667 442 5186 3 chr2D.!!$R4 4744
2 TraesCS2A01G210400 chr2D 180326335 180327087 752 True 250.000000 250 73.001000 1714 2466 1 chr2D.!!$R3 752
3 TraesCS2A01G210400 chr2B 236804053 236808940 4887 True 2392.333333 5350 92.019333 448 5186 3 chr2B.!!$R3 4738

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
468 469 0.030235 TAGATCGGATCGTTGCACCG 59.970 55.0 12.08 6.36 46.71 4.94 F
1719 2176 0.179468 ATTTTCATGCATGCAGGGCC 59.821 50.0 30.00 0.00 0.00 5.80 F
2186 2643 0.251519 CCAAGAGCCCCAGAAAGCTT 60.252 55.0 0.00 0.00 40.11 3.74 F
3321 3778 0.327924 TGACTGGTTTCCGCATCCAT 59.672 50.0 0.00 0.00 0.00 3.41 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2388 2845 0.468585 TCCATGATCCTGGCCATTGC 60.469 55.000 5.51 0.0 36.16 3.56 R
3552 4009 1.063341 ACTGGGCTGAGAGCATAGAGA 60.063 52.381 0.00 0.0 44.75 3.10 R
4099 4556 1.358759 CAACCGGCAACAAGACCAC 59.641 57.895 0.00 0.0 0.00 4.16 R
4372 4829 0.251341 AGAACGCCTGGATGCCTTTT 60.251 50.000 0.00 0.0 0.00 2.27 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
24 25 7.187244 GGGAAGTAGAAGTACAAAAAGTCAC 57.813 40.000 0.00 0.00 0.00 3.67
25 26 6.990939 GGGAAGTAGAAGTACAAAAAGTCACT 59.009 38.462 0.00 0.00 0.00 3.41
26 27 7.498239 GGGAAGTAGAAGTACAAAAAGTCACTT 59.502 37.037 0.00 0.00 34.03 3.16
27 28 8.890718 GGAAGTAGAAGTACAAAAAGTCACTTT 58.109 33.333 0.00 0.00 34.94 2.66
28 29 9.704098 GAAGTAGAAGTACAAAAAGTCACTTTG 57.296 33.333 2.78 0.00 39.26 2.77
29 30 8.209917 AGTAGAAGTACAAAAAGTCACTTTGG 57.790 34.615 2.78 2.07 37.96 3.28
30 31 8.044908 AGTAGAAGTACAAAAAGTCACTTTGGA 58.955 33.333 2.78 0.00 37.96 3.53
31 32 7.696992 AGAAGTACAAAAAGTCACTTTGGAA 57.303 32.000 2.78 0.00 37.96 3.53
32 33 7.535997 AGAAGTACAAAAAGTCACTTTGGAAC 58.464 34.615 2.78 0.76 37.96 3.62
33 34 7.393515 AGAAGTACAAAAAGTCACTTTGGAACT 59.606 33.333 2.78 3.08 37.96 3.01
34 35 7.085052 AGTACAAAAAGTCACTTTGGAACTC 57.915 36.000 2.78 0.00 37.96 3.01
35 36 5.975693 ACAAAAAGTCACTTTGGAACTCA 57.024 34.783 2.78 0.00 37.96 3.41
36 37 5.954335 ACAAAAAGTCACTTTGGAACTCAG 58.046 37.500 2.78 0.00 37.96 3.35
37 38 5.105756 ACAAAAAGTCACTTTGGAACTCAGG 60.106 40.000 2.78 0.00 37.96 3.86
38 39 3.933861 AAGTCACTTTGGAACTCAGGT 57.066 42.857 0.00 0.00 0.00 4.00
39 40 3.199880 AGTCACTTTGGAACTCAGGTG 57.800 47.619 0.00 0.00 34.56 4.00
40 41 1.604278 GTCACTTTGGAACTCAGGTGC 59.396 52.381 0.00 0.00 33.86 5.01
41 42 1.211703 TCACTTTGGAACTCAGGTGCA 59.788 47.619 0.00 0.00 33.86 4.57
42 43 2.158623 TCACTTTGGAACTCAGGTGCAT 60.159 45.455 0.00 0.00 33.86 3.96
43 44 2.624838 CACTTTGGAACTCAGGTGCATT 59.375 45.455 0.00 0.00 0.00 3.56
44 45 2.624838 ACTTTGGAACTCAGGTGCATTG 59.375 45.455 0.00 0.00 0.00 2.82
45 46 1.619654 TTGGAACTCAGGTGCATTGG 58.380 50.000 0.00 0.00 0.00 3.16
46 47 0.770499 TGGAACTCAGGTGCATTGGA 59.230 50.000 0.00 0.00 0.00 3.53
47 48 1.271543 TGGAACTCAGGTGCATTGGAG 60.272 52.381 9.18 9.18 0.00 3.86
48 49 1.457346 GAACTCAGGTGCATTGGAGG 58.543 55.000 13.69 3.61 0.00 4.30
49 50 0.610232 AACTCAGGTGCATTGGAGGC 60.610 55.000 13.69 0.00 0.00 4.70
50 51 1.751927 CTCAGGTGCATTGGAGGCC 60.752 63.158 0.00 0.00 0.00 5.19
51 52 2.207501 CTCAGGTGCATTGGAGGCCT 62.208 60.000 3.86 3.86 0.00 5.19
52 53 0.913934 TCAGGTGCATTGGAGGCCTA 60.914 55.000 4.42 0.00 0.00 3.93
53 54 0.184451 CAGGTGCATTGGAGGCCTAT 59.816 55.000 4.42 0.00 0.00 2.57
54 55 0.929244 AGGTGCATTGGAGGCCTATT 59.071 50.000 4.42 0.00 0.00 1.73
55 56 1.288932 AGGTGCATTGGAGGCCTATTT 59.711 47.619 4.42 0.00 0.00 1.40
56 57 2.110578 GGTGCATTGGAGGCCTATTTT 58.889 47.619 4.42 0.00 0.00 1.82
57 58 2.501316 GGTGCATTGGAGGCCTATTTTT 59.499 45.455 4.42 0.00 0.00 1.94
75 76 4.612932 TTTTTGAACTGTGCCAAAATGC 57.387 36.364 16.64 0.00 40.55 3.56
76 77 3.540314 TTTGAACTGTGCCAAAATGCT 57.460 38.095 6.26 0.00 30.29 3.79
77 78 3.540314 TTGAACTGTGCCAAAATGCTT 57.460 38.095 0.00 0.00 0.00 3.91
78 79 3.540314 TGAACTGTGCCAAAATGCTTT 57.460 38.095 0.00 0.00 0.00 3.51
79 80 3.871485 TGAACTGTGCCAAAATGCTTTT 58.129 36.364 0.00 0.00 0.00 2.27
80 81 4.260170 TGAACTGTGCCAAAATGCTTTTT 58.740 34.783 4.57 4.57 35.41 1.94
156 157 4.735662 ACACATGTGCAAATTTTGATGC 57.264 36.364 25.68 0.00 42.86 3.91
157 158 4.382291 ACACATGTGCAAATTTTGATGCT 58.618 34.783 25.68 0.00 42.97 3.79
158 159 4.212425 ACACATGTGCAAATTTTGATGCTG 59.788 37.500 25.68 10.18 42.97 4.41
159 160 4.449405 CACATGTGCAAATTTTGATGCTGA 59.551 37.500 13.94 0.00 42.97 4.26
160 161 5.050023 CACATGTGCAAATTTTGATGCTGAA 60.050 36.000 13.94 0.00 42.97 3.02
161 162 5.527951 ACATGTGCAAATTTTGATGCTGAAA 59.472 32.000 13.26 0.00 42.97 2.69
162 163 6.205853 ACATGTGCAAATTTTGATGCTGAAAT 59.794 30.769 13.26 0.00 42.97 2.17
163 164 7.388224 ACATGTGCAAATTTTGATGCTGAAATA 59.612 29.630 13.26 0.00 42.97 1.40
164 165 7.725818 TGTGCAAATTTTGATGCTGAAATAA 57.274 28.000 13.26 0.00 42.97 1.40
165 166 7.798801 TGTGCAAATTTTGATGCTGAAATAAG 58.201 30.769 13.26 0.00 42.97 1.73
166 167 7.441760 TGTGCAAATTTTGATGCTGAAATAAGT 59.558 29.630 13.26 0.00 42.97 2.24
167 168 8.924691 GTGCAAATTTTGATGCTGAAATAAGTA 58.075 29.630 13.26 0.00 42.97 2.24
168 169 9.486497 TGCAAATTTTGATGCTGAAATAAGTAA 57.514 25.926 13.26 0.00 42.97 2.24
169 170 9.745323 GCAAATTTTGATGCTGAAATAAGTAAC 57.255 29.630 13.26 0.00 39.46 2.50
171 172 9.995003 AAATTTTGATGCTGAAATAAGTAACCA 57.005 25.926 0.00 0.00 0.00 3.67
173 174 8.984891 TTTTGATGCTGAAATAAGTAACCATG 57.015 30.769 0.00 0.00 0.00 3.66
174 175 7.701539 TTGATGCTGAAATAAGTAACCATGT 57.298 32.000 0.00 0.00 0.00 3.21
175 176 7.087409 TGATGCTGAAATAAGTAACCATGTG 57.913 36.000 0.00 0.00 0.00 3.21
176 177 6.883756 TGATGCTGAAATAAGTAACCATGTGA 59.116 34.615 0.00 0.00 0.00 3.58
177 178 7.392953 TGATGCTGAAATAAGTAACCATGTGAA 59.607 33.333 0.00 0.00 0.00 3.18
178 179 7.701539 TGCTGAAATAAGTAACCATGTGAAT 57.298 32.000 0.00 0.00 0.00 2.57
179 180 8.121305 TGCTGAAATAAGTAACCATGTGAATT 57.879 30.769 0.00 0.00 0.00 2.17
180 181 9.237187 TGCTGAAATAAGTAACCATGTGAATTA 57.763 29.630 0.00 0.00 0.00 1.40
181 182 9.503427 GCTGAAATAAGTAACCATGTGAATTAC 57.497 33.333 0.00 0.00 0.00 1.89
200 201 9.307121 TGAATTACACAAAAATGACAAAATCGT 57.693 25.926 0.00 0.00 0.00 3.73
201 202 9.566624 GAATTACACAAAAATGACAAAATCGTG 57.433 29.630 0.00 0.00 0.00 4.35
202 203 5.964887 ACACAAAAATGACAAAATCGTGG 57.035 34.783 0.00 0.00 0.00 4.94
203 204 5.415221 ACACAAAAATGACAAAATCGTGGT 58.585 33.333 0.00 0.00 0.00 4.16
204 205 5.872070 ACACAAAAATGACAAAATCGTGGTT 59.128 32.000 0.00 0.00 0.00 3.67
205 206 6.370166 ACACAAAAATGACAAAATCGTGGTTT 59.630 30.769 0.00 0.00 0.00 3.27
206 207 7.095017 ACACAAAAATGACAAAATCGTGGTTTT 60.095 29.630 0.00 0.00 0.00 2.43
215 216 6.214205 CAAAATCGTGGTTTTGGAAAGATG 57.786 37.500 9.88 0.00 42.51 2.90
216 217 5.782893 AAATCGTGGTTTTGGAAAGATGA 57.217 34.783 0.00 0.00 0.00 2.92
217 218 5.782893 AATCGTGGTTTTGGAAAGATGAA 57.217 34.783 0.00 0.00 0.00 2.57
218 219 4.561735 TCGTGGTTTTGGAAAGATGAAC 57.438 40.909 0.00 0.00 0.00 3.18
219 220 3.948473 TCGTGGTTTTGGAAAGATGAACA 59.052 39.130 0.00 0.00 0.00 3.18
220 221 4.036262 TCGTGGTTTTGGAAAGATGAACAG 59.964 41.667 0.00 0.00 0.00 3.16
221 222 4.202010 CGTGGTTTTGGAAAGATGAACAGT 60.202 41.667 0.00 0.00 0.00 3.55
222 223 5.008217 CGTGGTTTTGGAAAGATGAACAGTA 59.992 40.000 0.00 0.00 0.00 2.74
223 224 6.206498 GTGGTTTTGGAAAGATGAACAGTAC 58.794 40.000 0.00 0.00 0.00 2.73
224 225 5.888724 TGGTTTTGGAAAGATGAACAGTACA 59.111 36.000 0.00 0.00 0.00 2.90
225 226 6.549364 TGGTTTTGGAAAGATGAACAGTACAT 59.451 34.615 0.00 0.00 0.00 2.29
226 227 6.863126 GGTTTTGGAAAGATGAACAGTACATG 59.137 38.462 0.00 0.00 0.00 3.21
227 228 5.627499 TTGGAAAGATGAACAGTACATGC 57.373 39.130 0.00 0.00 0.00 4.06
228 229 4.650734 TGGAAAGATGAACAGTACATGCA 58.349 39.130 0.00 0.00 0.00 3.96
229 230 5.255687 TGGAAAGATGAACAGTACATGCAT 58.744 37.500 0.00 0.00 0.00 3.96
230 231 5.711506 TGGAAAGATGAACAGTACATGCATT 59.288 36.000 0.00 0.00 0.00 3.56
231 232 6.883756 TGGAAAGATGAACAGTACATGCATTA 59.116 34.615 0.00 0.00 0.00 1.90
232 233 7.557358 TGGAAAGATGAACAGTACATGCATTAT 59.443 33.333 0.00 0.00 0.00 1.28
233 234 8.408601 GGAAAGATGAACAGTACATGCATTATT 58.591 33.333 0.00 0.00 0.00 1.40
234 235 9.443283 GAAAGATGAACAGTACATGCATTATTC 57.557 33.333 0.00 0.00 0.00 1.75
235 236 8.510243 AAGATGAACAGTACATGCATTATTCA 57.490 30.769 0.00 0.00 0.00 2.57
236 237 7.923888 AGATGAACAGTACATGCATTATTCAC 58.076 34.615 0.00 0.00 0.00 3.18
237 238 7.772292 AGATGAACAGTACATGCATTATTCACT 59.228 33.333 0.00 0.00 0.00 3.41
238 239 8.962884 ATGAACAGTACATGCATTATTCACTA 57.037 30.769 0.00 0.00 0.00 2.74
239 240 8.962884 TGAACAGTACATGCATTATTCACTAT 57.037 30.769 0.00 0.00 0.00 2.12
240 241 9.394767 TGAACAGTACATGCATTATTCACTATT 57.605 29.630 0.00 0.00 0.00 1.73
243 244 8.623903 ACAGTACATGCATTATTCACTATTTGG 58.376 33.333 0.00 0.00 0.00 3.28
244 245 8.839343 CAGTACATGCATTATTCACTATTTGGA 58.161 33.333 0.00 0.00 0.00 3.53
245 246 9.407380 AGTACATGCATTATTCACTATTTGGAA 57.593 29.630 0.00 0.00 0.00 3.53
248 249 9.754382 ACATGCATTATTCACTATTTGGAAATC 57.246 29.630 0.00 0.00 0.00 2.17
249 250 9.752961 CATGCATTATTCACTATTTGGAAATCA 57.247 29.630 0.00 0.00 0.00 2.57
250 251 9.754382 ATGCATTATTCACTATTTGGAAATCAC 57.246 29.630 0.00 0.00 0.00 3.06
251 252 8.196771 TGCATTATTCACTATTTGGAAATCACC 58.803 33.333 0.00 0.00 0.00 4.02
252 253 8.196771 GCATTATTCACTATTTGGAAATCACCA 58.803 33.333 0.00 0.00 38.24 4.17
257 258 8.830201 TTCACTATTTGGAAATCACCATTTTG 57.170 30.769 0.00 0.00 39.82 2.44
258 259 7.961351 TCACTATTTGGAAATCACCATTTTGT 58.039 30.769 0.00 0.00 39.82 2.83
259 260 8.087750 TCACTATTTGGAAATCACCATTTTGTC 58.912 33.333 0.00 0.00 39.82 3.18
260 261 7.871973 CACTATTTGGAAATCACCATTTTGTCA 59.128 33.333 0.00 0.00 39.82 3.58
261 262 8.596293 ACTATTTGGAAATCACCATTTTGTCAT 58.404 29.630 0.00 0.00 39.82 3.06
262 263 9.439500 CTATTTGGAAATCACCATTTTGTCATT 57.561 29.630 0.00 0.00 39.82 2.57
263 264 8.694581 ATTTGGAAATCACCATTTTGTCATTT 57.305 26.923 0.00 0.00 39.82 2.32
264 265 8.517062 TTTGGAAATCACCATTTTGTCATTTT 57.483 26.923 0.00 0.00 39.82 1.82
265 266 8.517062 TTGGAAATCACCATTTTGTCATTTTT 57.483 26.923 0.00 0.00 39.82 1.94
266 267 9.618890 TTGGAAATCACCATTTTGTCATTTTTA 57.381 25.926 0.00 0.00 39.82 1.52
267 268 9.790344 TGGAAATCACCATTTTGTCATTTTTAT 57.210 25.926 0.00 0.00 34.77 1.40
276 277 9.180678 CCATTTTGTCATTTTTATATAGGTCGC 57.819 33.333 0.00 0.00 0.00 5.19
277 278 9.180678 CATTTTGTCATTTTTATATAGGTCGCC 57.819 33.333 0.00 0.00 0.00 5.54
278 279 8.514330 TTTTGTCATTTTTATATAGGTCGCCT 57.486 30.769 3.87 3.87 37.71 5.52
279 280 9.616156 TTTTGTCATTTTTATATAGGTCGCCTA 57.384 29.630 7.86 7.86 40.71 3.93
281 282 9.787435 TTGTCATTTTTATATAGGTCGCCTATT 57.213 29.630 19.17 11.85 43.60 1.73
282 283 9.787435 TGTCATTTTTATATAGGTCGCCTATTT 57.213 29.630 19.17 15.02 43.60 1.40
294 295 7.964604 AGGTCGCCTATTTACTTATTTCATC 57.035 36.000 0.00 0.00 28.47 2.92
295 296 7.506114 AGGTCGCCTATTTACTTATTTCATCA 58.494 34.615 0.00 0.00 28.47 3.07
296 297 7.441458 AGGTCGCCTATTTACTTATTTCATCAC 59.559 37.037 0.00 0.00 28.47 3.06
297 298 7.307811 GGTCGCCTATTTACTTATTTCATCACC 60.308 40.741 0.00 0.00 0.00 4.02
298 299 7.225931 GTCGCCTATTTACTTATTTCATCACCA 59.774 37.037 0.00 0.00 0.00 4.17
299 300 7.771361 TCGCCTATTTACTTATTTCATCACCAA 59.229 33.333 0.00 0.00 0.00 3.67
300 301 8.402472 CGCCTATTTACTTATTTCATCACCAAA 58.598 33.333 0.00 0.00 0.00 3.28
301 302 9.516314 GCCTATTTACTTATTTCATCACCAAAC 57.484 33.333 0.00 0.00 0.00 2.93
309 310 8.908903 ACTTATTTCATCACCAAACTTTACACA 58.091 29.630 0.00 0.00 0.00 3.72
310 311 9.912634 CTTATTTCATCACCAAACTTTACACAT 57.087 29.630 0.00 0.00 0.00 3.21
311 312 9.689976 TTATTTCATCACCAAACTTTACACATG 57.310 29.630 0.00 0.00 0.00 3.21
312 313 6.707440 TTCATCACCAAACTTTACACATGT 57.293 33.333 0.00 0.00 0.00 3.21
313 314 6.070897 TCATCACCAAACTTTACACATGTG 57.929 37.500 24.25 24.25 0.00 3.21
314 315 5.592282 TCATCACCAAACTTTACACATGTGT 59.408 36.000 32.47 32.47 46.87 3.72
315 316 6.768381 TCATCACCAAACTTTACACATGTGTA 59.232 34.615 30.31 30.31 44.42 2.90
336 337 9.801873 TGTGTAATATACATCCATATGATCACG 57.198 33.333 3.65 0.00 41.34 4.35
337 338 9.803315 GTGTAATATACATCCATATGATCACGT 57.197 33.333 3.65 0.00 41.34 4.49
345 346 8.908786 ACATCCATATGATCACGTAGAATTTT 57.091 30.769 3.65 0.00 36.54 1.82
346 347 9.342308 ACATCCATATGATCACGTAGAATTTTT 57.658 29.630 3.65 0.00 36.54 1.94
413 414 8.990163 TTAAAATAAGGTCCTCCAATACATCC 57.010 34.615 0.00 0.00 35.89 3.51
414 415 4.891992 ATAAGGTCCTCCAATACATCCG 57.108 45.455 0.00 0.00 35.89 4.18
415 416 1.424638 AGGTCCTCCAATACATCCGG 58.575 55.000 0.00 0.00 35.89 5.14
416 417 0.396811 GGTCCTCCAATACATCCGGG 59.603 60.000 0.00 0.00 0.00 5.73
417 418 1.129058 GTCCTCCAATACATCCGGGT 58.871 55.000 0.00 0.00 0.00 5.28
418 419 1.489230 GTCCTCCAATACATCCGGGTT 59.511 52.381 0.00 0.00 0.00 4.11
419 420 2.092592 GTCCTCCAATACATCCGGGTTT 60.093 50.000 0.00 0.00 0.00 3.27
420 421 2.171870 TCCTCCAATACATCCGGGTTTC 59.828 50.000 0.00 0.00 0.00 2.78
421 422 2.092646 CCTCCAATACATCCGGGTTTCA 60.093 50.000 0.00 0.00 0.00 2.69
422 423 3.616219 CTCCAATACATCCGGGTTTCAA 58.384 45.455 0.00 0.00 0.00 2.69
423 424 4.013728 CTCCAATACATCCGGGTTTCAAA 58.986 43.478 0.00 0.00 0.00 2.69
424 425 4.408276 TCCAATACATCCGGGTTTCAAAA 58.592 39.130 0.00 0.00 0.00 2.44
425 426 4.833380 TCCAATACATCCGGGTTTCAAAAA 59.167 37.500 0.00 0.00 0.00 1.94
426 427 5.482175 TCCAATACATCCGGGTTTCAAAAAT 59.518 36.000 0.00 0.00 0.00 1.82
427 428 5.810074 CCAATACATCCGGGTTTCAAAAATC 59.190 40.000 0.00 0.00 0.00 2.17
428 429 3.953712 ACATCCGGGTTTCAAAAATCC 57.046 42.857 0.00 0.00 0.00 3.01
429 430 3.235200 ACATCCGGGTTTCAAAAATCCA 58.765 40.909 0.00 0.00 0.00 3.41
430 431 3.006430 ACATCCGGGTTTCAAAAATCCAC 59.994 43.478 0.00 0.00 0.00 4.02
431 432 2.952116 TCCGGGTTTCAAAAATCCACT 58.048 42.857 0.00 0.00 0.00 4.00
432 433 2.888414 TCCGGGTTTCAAAAATCCACTC 59.112 45.455 0.00 0.00 0.00 3.51
433 434 2.890945 CCGGGTTTCAAAAATCCACTCT 59.109 45.455 0.00 0.00 0.00 3.24
434 435 3.057526 CCGGGTTTCAAAAATCCACTCTC 60.058 47.826 0.00 0.00 0.00 3.20
435 436 3.568007 CGGGTTTCAAAAATCCACTCTCA 59.432 43.478 2.86 0.00 0.00 3.27
436 437 4.320494 CGGGTTTCAAAAATCCACTCTCAG 60.320 45.833 2.86 0.00 0.00 3.35
437 438 4.584743 GGGTTTCAAAAATCCACTCTCAGT 59.415 41.667 0.00 0.00 0.00 3.41
438 439 5.768164 GGGTTTCAAAAATCCACTCTCAGTA 59.232 40.000 0.00 0.00 0.00 2.74
439 440 6.072452 GGGTTTCAAAAATCCACTCTCAGTAG 60.072 42.308 0.00 0.00 0.00 2.57
440 441 6.710744 GGTTTCAAAAATCCACTCTCAGTAGA 59.289 38.462 0.00 0.00 0.00 2.59
441 442 7.228706 GGTTTCAAAAATCCACTCTCAGTAGAA 59.771 37.037 0.00 0.00 0.00 2.10
442 443 7.969536 TTCAAAAATCCACTCTCAGTAGAAG 57.030 36.000 0.00 0.00 0.00 2.85
443 444 7.067496 TCAAAAATCCACTCTCAGTAGAAGT 57.933 36.000 0.00 0.00 0.00 3.01
444 445 8.190326 TCAAAAATCCACTCTCAGTAGAAGTA 57.810 34.615 0.00 0.00 0.00 2.24
445 446 8.307483 TCAAAAATCCACTCTCAGTAGAAGTAG 58.693 37.037 0.00 0.00 0.00 2.57
446 447 6.783708 AAATCCACTCTCAGTAGAAGTAGG 57.216 41.667 0.00 0.00 0.00 3.18
468 469 0.030235 TAGATCGGATCGTTGCACCG 59.970 55.000 12.08 6.36 46.71 4.94
469 470 2.871427 GATCGGATCGTTGCACCGC 61.871 63.158 7.77 0.00 45.25 5.68
519 520 3.669290 CGACGCAGGCAAAACAAATATGA 60.669 43.478 0.00 0.00 0.00 2.15
555 557 1.632422 GCGCGGCTACTAAACTAACA 58.368 50.000 8.83 0.00 0.00 2.41
677 1007 4.166011 GCGTGCGTGCATCTTCCC 62.166 66.667 0.00 0.00 34.15 3.97
678 1008 3.853330 CGTGCGTGCATCTTCCCG 61.853 66.667 0.00 0.00 0.00 5.14
754 1084 1.065199 TGGATGGCTACTTGGCTTCTG 60.065 52.381 0.00 0.00 42.47 3.02
776 1106 2.957491 CTAAGTGAGGACAGAGCAGG 57.043 55.000 0.00 0.00 0.00 4.85
879 1209 1.452651 CCGTCCTAGTACCTCGCCA 60.453 63.158 0.00 0.00 0.00 5.69
896 1241 5.068460 CCTCGCCATTCCTCCTCTATATAAG 59.932 48.000 0.00 0.00 0.00 1.73
1218 1579 0.838554 TGCACCCCTACAGGTAAGCA 60.839 55.000 0.00 0.00 38.39 3.91
1244 1605 4.212425 CCAAATCCAAGCGCGTACATATTA 59.788 41.667 8.43 0.00 0.00 0.98
1245 1606 5.374080 CAAATCCAAGCGCGTACATATTAG 58.626 41.667 8.43 0.00 0.00 1.73
1250 1613 4.203828 CAAGCGCGTACATATTAGCTTTG 58.796 43.478 8.43 0.00 42.18 2.77
1263 1626 7.546667 ACATATTAGCTTTGGAAATGTGCTTTG 59.453 33.333 0.00 0.00 35.47 2.77
1303 1666 2.747446 GCTGGTGAAATGACGGTTATGT 59.253 45.455 0.00 0.00 0.00 2.29
1452 1819 3.942130 AGCATGTAAAGGTGCTTTTCC 57.058 42.857 0.00 0.00 35.21 3.13
1463 1830 7.833285 AAAGGTGCTTTTCCTGACTTATAAA 57.167 32.000 0.00 0.00 35.27 1.40
1464 1831 8.422577 AAAGGTGCTTTTCCTGACTTATAAAT 57.577 30.769 0.00 0.00 35.27 1.40
1561 2011 2.489329 CCAGTGTTTTGCCTGTATCCTG 59.511 50.000 0.00 0.00 0.00 3.86
1595 2045 3.809832 ACTGAATTCTGTTCCACAAGTCG 59.190 43.478 11.82 0.00 0.00 4.18
1633 2083 1.201414 TGACATCATGTACGTCGTGCT 59.799 47.619 14.61 0.00 33.44 4.40
1634 2084 2.259618 GACATCATGTACGTCGTGCTT 58.740 47.619 14.61 5.55 33.44 3.91
1656 2106 8.227791 TGCTTACGATTCTGACAAGTATTTTTC 58.772 33.333 0.00 0.00 0.00 2.29
1719 2176 0.179468 ATTTTCATGCATGCAGGGCC 59.821 50.000 30.00 0.00 0.00 5.80
1746 2203 3.438781 TCTTCATTCGCTTAATTGCCGTT 59.561 39.130 0.00 0.00 0.00 4.44
1785 2242 2.663808 CGCATCAAGCACAACAAATCA 58.336 42.857 0.00 0.00 46.13 2.57
1875 2332 3.052414 ACCAACTCCCAAAGTTTAACCCT 60.052 43.478 0.00 0.00 46.26 4.34
1923 2380 3.243771 CCCTTAGGCGACAATACGATCTT 60.244 47.826 0.00 0.00 35.09 2.40
2186 2643 0.251519 CCAAGAGCCCCAGAAAGCTT 60.252 55.000 0.00 0.00 40.11 3.74
2346 2803 2.813754 TGCTTACAACAGCATGAAGACC 59.186 45.455 0.00 0.00 45.14 3.85
2361 2818 1.045911 AGACCGAGGAAGGAGATGCC 61.046 60.000 0.00 0.00 34.73 4.40
2364 2821 0.462759 CCGAGGAAGGAGATGCCAAC 60.463 60.000 0.00 0.00 40.02 3.77
2388 2845 0.457035 CTTGGATGGCAAATGGGACG 59.543 55.000 0.00 0.00 0.00 4.79
2445 2902 3.718434 TCCATAGGAAAGGACATCATGCT 59.282 43.478 0.00 0.00 0.00 3.79
2466 2923 7.385778 TGCTGGAATTGTTAAGGTATACAAC 57.614 36.000 5.01 1.58 37.11 3.32
2880 3337 3.190079 GTGCTTCATGCTAGATCAACGA 58.810 45.455 0.00 0.00 43.37 3.85
2898 3355 1.404717 CGACAAGGTGATAGCACTGCT 60.405 52.381 11.48 8.95 44.52 4.24
2973 3430 2.413310 ACCACAACCGTGTCTTCTTT 57.587 45.000 0.00 0.00 41.93 2.52
3086 3543 3.149899 CACCTGAGTGGAGACATGC 57.850 57.895 0.00 0.00 46.14 4.06
3096 3553 0.729116 GGAGACATGCCAACATCGTG 59.271 55.000 0.00 0.00 32.87 4.35
3321 3778 0.327924 TGACTGGTTTCCGCATCCAT 59.672 50.000 0.00 0.00 0.00 3.41
3360 3817 3.303990 CCATGTATTGTACAATGGAGCGC 60.304 47.826 27.62 0.00 42.76 5.92
3396 3853 3.056607 GCATTGCACCAATCAACCTAACT 60.057 43.478 3.15 0.00 31.05 2.24
3420 3877 1.080569 CCTCCACCAAATTGTGCGC 60.081 57.895 0.00 0.00 34.85 6.09
3522 3979 2.492088 TGTCTCCTACCTCAACATGACG 59.508 50.000 0.00 0.00 0.00 4.35
3534 3991 2.494471 CAACATGACGGTCTACCCAGTA 59.506 50.000 9.88 0.00 0.00 2.74
3552 4009 6.215636 ACCCAGTAACATCACTCTTTATCCTT 59.784 38.462 0.00 0.00 0.00 3.36
3603 4060 7.044798 GGCTTATCCCTGATGAAGTATACATC 58.955 42.308 5.50 3.16 42.81 3.06
3900 4357 2.741145 TGGGTGCCAATGTTAATACCC 58.259 47.619 0.00 0.00 46.23 3.69
4170 4627 8.331742 GTTGCTGTTCATATCTTACTTCTTAGC 58.668 37.037 0.00 0.00 0.00 3.09
4492 4949 6.320164 TGGTTTACAATTTCACACTAGCTTGT 59.680 34.615 0.00 0.00 0.00 3.16
4508 4965 7.604164 CACTAGCTTGTGATCTTAAAAGGAAGA 59.396 37.037 21.76 0.00 40.12 2.87
4542 5006 7.123997 TGCAAATTATGAACCACAGATTACCAT 59.876 33.333 0.00 0.00 0.00 3.55
4550 5014 6.549364 TGAACCACAGATTACCATTTCTTGTT 59.451 34.615 0.00 0.00 0.00 2.83
4627 5094 7.741554 AAAGGAGTACAGACAAAGGATATCT 57.258 36.000 2.05 0.00 0.00 1.98
4628 5095 8.840200 AAAGGAGTACAGACAAAGGATATCTA 57.160 34.615 2.05 0.00 0.00 1.98
4629 5096 8.472007 AAGGAGTACAGACAAAGGATATCTAG 57.528 38.462 2.05 0.00 0.00 2.43
4630 5097 7.588169 AGGAGTACAGACAAAGGATATCTAGT 58.412 38.462 2.05 0.00 0.00 2.57
4631 5098 8.725256 AGGAGTACAGACAAAGGATATCTAGTA 58.275 37.037 2.05 0.00 0.00 1.82
4707 5181 2.232941 CTCCAGCGTTTCTACTAACCCA 59.767 50.000 0.00 0.00 0.00 4.51
4713 5187 2.564062 CGTTTCTACTAACCCACCCTGA 59.436 50.000 0.00 0.00 0.00 3.86
4718 5192 4.695606 TCTACTAACCCACCCTGAATCTT 58.304 43.478 0.00 0.00 0.00 2.40
4732 5206 7.910162 CACCCTGAATCTTATTGACATTTTACG 59.090 37.037 0.00 0.00 0.00 3.18
4739 5213 7.972832 TCTTATTGACATTTTACGGAACACT 57.027 32.000 0.00 0.00 0.00 3.55
4839 5321 1.267121 AATAGGAGCTCACGTGTGGT 58.733 50.000 20.95 20.95 0.00 4.16
4861 5343 0.036388 GTGGAGATGACGGAGCCAAA 60.036 55.000 0.00 0.00 0.00 3.28
4942 5561 3.904800 TGTTTCATGAAGCTCCGGATA 57.095 42.857 21.00 0.00 0.00 2.59
4967 5588 1.687123 GCGGGCTGAGTATTTAGAGGA 59.313 52.381 0.00 0.00 0.00 3.71
4972 5593 3.493524 GGCTGAGTATTTAGAGGACCAGC 60.494 52.174 0.00 0.00 43.39 4.85
5178 5816 3.449018 AGGTGAGCTGTCGAAAGATACAT 59.551 43.478 6.84 0.00 45.19 2.29
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 6.990939 AGTGACTTTTTGTACTTCTACTTCCC 59.009 38.462 0.00 0.00 0.00 3.97
4 5 8.044908 TCCAAAGTGACTTTTTGTACTTCTACT 58.955 33.333 8.03 0.00 34.51 2.57
5 6 8.205131 TCCAAAGTGACTTTTTGTACTTCTAC 57.795 34.615 8.03 0.00 34.51 2.59
6 7 8.671028 GTTCCAAAGTGACTTTTTGTACTTCTA 58.329 33.333 8.03 0.00 34.51 2.10
7 8 7.393515 AGTTCCAAAGTGACTTTTTGTACTTCT 59.606 33.333 8.03 0.00 34.51 2.85
8 9 7.535997 AGTTCCAAAGTGACTTTTTGTACTTC 58.464 34.615 8.03 0.00 34.51 3.01
9 10 7.175990 TGAGTTCCAAAGTGACTTTTTGTACTT 59.824 33.333 8.03 0.00 32.98 2.24
10 11 6.657541 TGAGTTCCAAAGTGACTTTTTGTACT 59.342 34.615 8.03 11.20 34.26 2.73
11 12 6.848451 TGAGTTCCAAAGTGACTTTTTGTAC 58.152 36.000 8.03 6.88 34.51 2.90
12 13 6.094881 CCTGAGTTCCAAAGTGACTTTTTGTA 59.905 38.462 8.03 0.00 34.51 2.41
13 14 5.105756 CCTGAGTTCCAAAGTGACTTTTTGT 60.106 40.000 8.03 0.00 34.51 2.83
14 15 5.105756 ACCTGAGTTCCAAAGTGACTTTTTG 60.106 40.000 8.03 3.03 35.75 2.44
15 16 5.016831 ACCTGAGTTCCAAAGTGACTTTTT 58.983 37.500 8.03 0.00 30.60 1.94
16 17 4.399303 CACCTGAGTTCCAAAGTGACTTTT 59.601 41.667 8.03 0.00 33.31 2.27
17 18 3.947834 CACCTGAGTTCCAAAGTGACTTT 59.052 43.478 4.45 4.45 33.31 2.66
18 19 3.545703 CACCTGAGTTCCAAAGTGACTT 58.454 45.455 0.00 0.00 33.31 3.01
19 20 2.746472 GCACCTGAGTTCCAAAGTGACT 60.746 50.000 0.00 0.00 33.31 3.41
20 21 1.604278 GCACCTGAGTTCCAAAGTGAC 59.396 52.381 0.00 0.00 33.31 3.67
21 22 1.211703 TGCACCTGAGTTCCAAAGTGA 59.788 47.619 0.00 0.00 33.31 3.41
22 23 1.679139 TGCACCTGAGTTCCAAAGTG 58.321 50.000 0.00 0.00 34.15 3.16
23 24 2.624838 CAATGCACCTGAGTTCCAAAGT 59.375 45.455 0.00 0.00 0.00 2.66
24 25 2.029649 CCAATGCACCTGAGTTCCAAAG 60.030 50.000 0.00 0.00 0.00 2.77
25 26 1.962807 CCAATGCACCTGAGTTCCAAA 59.037 47.619 0.00 0.00 0.00 3.28
26 27 1.144708 TCCAATGCACCTGAGTTCCAA 59.855 47.619 0.00 0.00 0.00 3.53
27 28 0.770499 TCCAATGCACCTGAGTTCCA 59.230 50.000 0.00 0.00 0.00 3.53
28 29 1.457346 CTCCAATGCACCTGAGTTCC 58.543 55.000 0.00 0.00 0.00 3.62
29 30 1.457346 CCTCCAATGCACCTGAGTTC 58.543 55.000 0.00 0.00 0.00 3.01
30 31 0.610232 GCCTCCAATGCACCTGAGTT 60.610 55.000 0.00 0.00 0.00 3.01
31 32 1.001641 GCCTCCAATGCACCTGAGT 60.002 57.895 0.00 0.00 0.00 3.41
32 33 1.751927 GGCCTCCAATGCACCTGAG 60.752 63.158 0.00 0.00 0.00 3.35
33 34 0.913934 TAGGCCTCCAATGCACCTGA 60.914 55.000 9.68 0.00 31.79 3.86
34 35 0.184451 ATAGGCCTCCAATGCACCTG 59.816 55.000 9.68 0.00 31.79 4.00
35 36 0.929244 AATAGGCCTCCAATGCACCT 59.071 50.000 9.68 0.00 34.42 4.00
36 37 1.780503 AAATAGGCCTCCAATGCACC 58.219 50.000 9.68 0.00 0.00 5.01
37 38 3.893326 AAAAATAGGCCTCCAATGCAC 57.107 42.857 9.68 0.00 0.00 4.57
54 55 4.260170 AGCATTTTGGCACAGTTCAAAAA 58.740 34.783 12.84 2.55 43.27 1.94
55 56 3.871485 AGCATTTTGGCACAGTTCAAAA 58.129 36.364 11.75 11.75 43.87 2.44
56 57 3.540314 AGCATTTTGGCACAGTTCAAA 57.460 38.095 0.00 0.00 42.39 2.69
57 58 3.540314 AAGCATTTTGGCACAGTTCAA 57.460 38.095 0.00 0.00 42.39 2.69
58 59 3.540314 AAAGCATTTTGGCACAGTTCA 57.460 38.095 0.00 0.00 42.39 3.18
130 131 8.605746 GCATCAAAATTTGCACATGTGTAATAT 58.394 29.630 26.72 19.42 38.72 1.28
131 132 7.818446 AGCATCAAAATTTGCACATGTGTAATA 59.182 29.630 26.72 18.27 41.35 0.98
132 133 6.651643 AGCATCAAAATTTGCACATGTGTAAT 59.348 30.769 26.72 21.47 41.35 1.89
133 134 5.990386 AGCATCAAAATTTGCACATGTGTAA 59.010 32.000 23.30 23.30 41.35 2.41
134 135 5.405873 CAGCATCAAAATTTGCACATGTGTA 59.594 36.000 26.01 20.04 41.35 2.90
135 136 4.212425 CAGCATCAAAATTTGCACATGTGT 59.788 37.500 26.01 4.19 41.35 3.72
136 137 4.449405 TCAGCATCAAAATTTGCACATGTG 59.551 37.500 21.83 21.83 41.35 3.21
137 138 4.633175 TCAGCATCAAAATTTGCACATGT 58.367 34.783 0.00 0.00 41.35 3.21
138 139 5.599359 TTCAGCATCAAAATTTGCACATG 57.401 34.783 0.00 1.54 41.35 3.21
139 140 6.811253 ATTTCAGCATCAAAATTTGCACAT 57.189 29.167 0.00 0.00 41.35 3.21
140 141 7.441760 ACTTATTTCAGCATCAAAATTTGCACA 59.558 29.630 0.00 0.00 41.35 4.57
141 142 7.799784 ACTTATTTCAGCATCAAAATTTGCAC 58.200 30.769 0.00 0.00 41.35 4.57
142 143 7.966246 ACTTATTTCAGCATCAAAATTTGCA 57.034 28.000 0.00 0.00 41.35 4.08
143 144 9.745323 GTTACTTATTTCAGCATCAAAATTTGC 57.255 29.630 0.00 0.00 39.17 3.68
145 146 9.995003 TGGTTACTTATTTCAGCATCAAAATTT 57.005 25.926 0.00 0.00 0.00 1.82
147 148 9.590451 CATGGTTACTTATTTCAGCATCAAAAT 57.410 29.630 0.00 0.00 0.00 1.82
148 149 8.584157 ACATGGTTACTTATTTCAGCATCAAAA 58.416 29.630 0.00 0.00 0.00 2.44
149 150 8.028354 CACATGGTTACTTATTTCAGCATCAAA 58.972 33.333 0.00 0.00 0.00 2.69
150 151 7.392953 TCACATGGTTACTTATTTCAGCATCAA 59.607 33.333 0.00 0.00 0.00 2.57
151 152 6.883756 TCACATGGTTACTTATTTCAGCATCA 59.116 34.615 0.00 0.00 0.00 3.07
152 153 7.320443 TCACATGGTTACTTATTTCAGCATC 57.680 36.000 0.00 0.00 0.00 3.91
153 154 7.701539 TTCACATGGTTACTTATTTCAGCAT 57.298 32.000 0.00 0.00 0.00 3.79
154 155 7.701539 ATTCACATGGTTACTTATTTCAGCA 57.298 32.000 0.00 0.00 0.00 4.41
155 156 9.503427 GTAATTCACATGGTTACTTATTTCAGC 57.497 33.333 0.00 0.00 0.00 4.26
173 174 9.566624 CGATTTTGTCATTTTTGTGTAATTCAC 57.433 29.630 0.00 0.00 46.31 3.18
174 175 9.307121 ACGATTTTGTCATTTTTGTGTAATTCA 57.693 25.926 0.00 0.00 0.00 2.57
175 176 9.566624 CACGATTTTGTCATTTTTGTGTAATTC 57.433 29.630 0.00 0.00 0.00 2.17
176 177 8.547069 CCACGATTTTGTCATTTTTGTGTAATT 58.453 29.630 0.00 0.00 0.00 1.40
177 178 7.708752 ACCACGATTTTGTCATTTTTGTGTAAT 59.291 29.630 0.00 0.00 0.00 1.89
178 179 7.036220 ACCACGATTTTGTCATTTTTGTGTAA 58.964 30.769 0.00 0.00 0.00 2.41
179 180 6.565234 ACCACGATTTTGTCATTTTTGTGTA 58.435 32.000 0.00 0.00 0.00 2.90
180 181 5.415221 ACCACGATTTTGTCATTTTTGTGT 58.585 33.333 0.00 0.00 0.00 3.72
181 182 5.964887 ACCACGATTTTGTCATTTTTGTG 57.035 34.783 0.00 0.00 0.00 3.33
182 183 6.976636 AAACCACGATTTTGTCATTTTTGT 57.023 29.167 0.00 0.00 0.00 2.83
183 184 6.686253 CCAAAACCACGATTTTGTCATTTTTG 59.314 34.615 16.97 0.00 44.58 2.44
184 185 6.595716 TCCAAAACCACGATTTTGTCATTTTT 59.404 30.769 16.97 0.00 44.58 1.94
185 186 6.109359 TCCAAAACCACGATTTTGTCATTTT 58.891 32.000 16.97 0.00 44.58 1.82
186 187 5.665459 TCCAAAACCACGATTTTGTCATTT 58.335 33.333 16.97 0.00 44.58 2.32
187 188 5.269505 TCCAAAACCACGATTTTGTCATT 57.730 34.783 16.97 0.00 44.58 2.57
188 189 4.927978 TCCAAAACCACGATTTTGTCAT 57.072 36.364 16.97 0.00 44.58 3.06
189 190 4.720649 TTCCAAAACCACGATTTTGTCA 57.279 36.364 16.97 6.43 44.58 3.58
190 191 5.344884 TCTTTCCAAAACCACGATTTTGTC 58.655 37.500 16.97 0.00 44.58 3.18
191 192 5.331876 TCTTTCCAAAACCACGATTTTGT 57.668 34.783 16.97 0.00 44.58 2.83
192 193 5.982516 TCATCTTTCCAAAACCACGATTTTG 59.017 36.000 13.63 13.63 45.29 2.44
193 194 6.155475 TCATCTTTCCAAAACCACGATTTT 57.845 33.333 0.00 0.00 31.87 1.82
194 195 5.782893 TCATCTTTCCAAAACCACGATTT 57.217 34.783 0.00 0.00 0.00 2.17
195 196 5.068460 TGTTCATCTTTCCAAAACCACGATT 59.932 36.000 0.00 0.00 0.00 3.34
196 197 4.582656 TGTTCATCTTTCCAAAACCACGAT 59.417 37.500 0.00 0.00 0.00 3.73
197 198 3.948473 TGTTCATCTTTCCAAAACCACGA 59.052 39.130 0.00 0.00 0.00 4.35
198 199 4.202010 ACTGTTCATCTTTCCAAAACCACG 60.202 41.667 0.00 0.00 0.00 4.94
199 200 5.262588 ACTGTTCATCTTTCCAAAACCAC 57.737 39.130 0.00 0.00 0.00 4.16
200 201 5.888724 TGTACTGTTCATCTTTCCAAAACCA 59.111 36.000 0.00 0.00 0.00 3.67
201 202 6.385649 TGTACTGTTCATCTTTCCAAAACC 57.614 37.500 0.00 0.00 0.00 3.27
202 203 6.363357 GCATGTACTGTTCATCTTTCCAAAAC 59.637 38.462 0.00 0.00 0.00 2.43
203 204 6.040278 TGCATGTACTGTTCATCTTTCCAAAA 59.960 34.615 0.00 0.00 0.00 2.44
204 205 5.534278 TGCATGTACTGTTCATCTTTCCAAA 59.466 36.000 0.00 0.00 0.00 3.28
205 206 5.069318 TGCATGTACTGTTCATCTTTCCAA 58.931 37.500 0.00 0.00 0.00 3.53
206 207 4.650734 TGCATGTACTGTTCATCTTTCCA 58.349 39.130 0.00 0.00 0.00 3.53
207 208 5.824904 ATGCATGTACTGTTCATCTTTCC 57.175 39.130 0.00 0.00 0.00 3.13
208 209 9.443283 GAATAATGCATGTACTGTTCATCTTTC 57.557 33.333 0.00 0.00 0.00 2.62
209 210 8.959548 TGAATAATGCATGTACTGTTCATCTTT 58.040 29.630 0.00 1.85 0.00 2.52
210 211 8.400947 GTGAATAATGCATGTACTGTTCATCTT 58.599 33.333 7.58 0.00 0.00 2.40
211 212 7.772292 AGTGAATAATGCATGTACTGTTCATCT 59.228 33.333 7.58 4.92 0.00 2.90
212 213 7.923888 AGTGAATAATGCATGTACTGTTCATC 58.076 34.615 7.58 3.07 0.00 2.92
213 214 7.870509 AGTGAATAATGCATGTACTGTTCAT 57.129 32.000 7.58 0.00 0.00 2.57
214 215 8.962884 ATAGTGAATAATGCATGTACTGTTCA 57.037 30.769 0.00 1.85 0.00 3.18
217 218 8.623903 CCAAATAGTGAATAATGCATGTACTGT 58.376 33.333 0.00 0.00 0.00 3.55
218 219 8.839343 TCCAAATAGTGAATAATGCATGTACTG 58.161 33.333 0.00 0.00 0.00 2.74
219 220 8.978874 TCCAAATAGTGAATAATGCATGTACT 57.021 30.769 0.00 3.53 0.00 2.73
222 223 9.754382 GATTTCCAAATAGTGAATAATGCATGT 57.246 29.630 0.00 0.00 0.00 3.21
223 224 9.752961 TGATTTCCAAATAGTGAATAATGCATG 57.247 29.630 0.00 0.00 0.00 4.06
224 225 9.754382 GTGATTTCCAAATAGTGAATAATGCAT 57.246 29.630 0.00 0.00 0.00 3.96
225 226 8.196771 GGTGATTTCCAAATAGTGAATAATGCA 58.803 33.333 0.00 0.00 0.00 3.96
226 227 8.196771 TGGTGATTTCCAAATAGTGAATAATGC 58.803 33.333 0.00 0.00 34.24 3.56
231 232 9.439500 CAAAATGGTGATTTCCAAATAGTGAAT 57.561 29.630 0.00 0.00 41.09 2.57
232 233 8.428063 ACAAAATGGTGATTTCCAAATAGTGAA 58.572 29.630 0.00 0.00 41.09 3.18
233 234 7.961351 ACAAAATGGTGATTTCCAAATAGTGA 58.039 30.769 0.00 0.00 41.09 3.41
234 235 7.871973 TGACAAAATGGTGATTTCCAAATAGTG 59.128 33.333 0.00 0.00 41.09 2.74
235 236 7.961351 TGACAAAATGGTGATTTCCAAATAGT 58.039 30.769 0.00 0.00 41.09 2.12
236 237 9.439500 AATGACAAAATGGTGATTTCCAAATAG 57.561 29.630 0.00 0.00 41.09 1.73
237 238 9.790344 AAATGACAAAATGGTGATTTCCAAATA 57.210 25.926 0.00 0.00 41.09 1.40
238 239 8.694581 AAATGACAAAATGGTGATTTCCAAAT 57.305 26.923 0.00 0.00 41.09 2.32
239 240 8.517062 AAAATGACAAAATGGTGATTTCCAAA 57.483 26.923 0.00 0.00 41.09 3.28
240 241 8.517062 AAAAATGACAAAATGGTGATTTCCAA 57.483 26.923 0.00 0.00 41.09 3.53
241 242 9.790344 ATAAAAATGACAAAATGGTGATTTCCA 57.210 25.926 0.00 0.00 34.25 3.53
250 251 9.180678 GCGACCTATATAAAAATGACAAAATGG 57.819 33.333 0.00 0.00 0.00 3.16
251 252 9.180678 GGCGACCTATATAAAAATGACAAAATG 57.819 33.333 0.00 0.00 0.00 2.32
252 253 9.131791 AGGCGACCTATATAAAAATGACAAAAT 57.868 29.630 0.00 0.00 28.47 1.82
253 254 8.514330 AGGCGACCTATATAAAAATGACAAAA 57.486 30.769 0.00 0.00 28.47 2.44
254 255 9.787435 ATAGGCGACCTATATAAAAATGACAAA 57.213 29.630 14.38 0.00 44.18 2.83
255 256 9.787435 AATAGGCGACCTATATAAAAATGACAA 57.213 29.630 15.77 0.00 45.14 3.18
256 257 9.787435 AAATAGGCGACCTATATAAAAATGACA 57.213 29.630 15.77 0.00 45.14 3.58
269 270 8.644216 TGATGAAATAAGTAAATAGGCGACCTA 58.356 33.333 7.86 7.86 40.71 3.08
270 271 7.441458 GTGATGAAATAAGTAAATAGGCGACCT 59.559 37.037 3.87 3.87 37.71 3.85
271 272 7.307811 GGTGATGAAATAAGTAAATAGGCGACC 60.308 40.741 0.00 0.00 0.00 4.79
272 273 7.225931 TGGTGATGAAATAAGTAAATAGGCGAC 59.774 37.037 0.00 0.00 0.00 5.19
273 274 7.276658 TGGTGATGAAATAAGTAAATAGGCGA 58.723 34.615 0.00 0.00 0.00 5.54
274 275 7.490962 TGGTGATGAAATAAGTAAATAGGCG 57.509 36.000 0.00 0.00 0.00 5.52
275 276 9.516314 GTTTGGTGATGAAATAAGTAAATAGGC 57.484 33.333 0.00 0.00 0.00 3.93
283 284 8.908903 TGTGTAAAGTTTGGTGATGAAATAAGT 58.091 29.630 0.00 0.00 0.00 2.24
284 285 9.912634 ATGTGTAAAGTTTGGTGATGAAATAAG 57.087 29.630 0.00 0.00 0.00 1.73
285 286 9.689976 CATGTGTAAAGTTTGGTGATGAAATAA 57.310 29.630 0.00 0.00 0.00 1.40
286 287 8.855110 ACATGTGTAAAGTTTGGTGATGAAATA 58.145 29.630 0.00 0.00 0.00 1.40
287 288 7.652909 CACATGTGTAAAGTTTGGTGATGAAAT 59.347 33.333 18.03 0.00 0.00 2.17
288 289 6.977502 CACATGTGTAAAGTTTGGTGATGAAA 59.022 34.615 18.03 0.00 0.00 2.69
289 290 6.096141 ACACATGTGTAAAGTTTGGTGATGAA 59.904 34.615 29.66 0.00 42.90 2.57
290 291 5.592282 ACACATGTGTAAAGTTTGGTGATGA 59.408 36.000 29.66 0.00 42.90 2.92
291 292 5.830912 ACACATGTGTAAAGTTTGGTGATG 58.169 37.500 29.66 0.00 42.90 3.07
310 311 9.801873 CGTGATCATATGGATGTATATTACACA 57.198 33.333 0.00 0.00 42.23 3.72
311 312 9.803315 ACGTGATCATATGGATGTATATTACAC 57.197 33.333 0.00 0.00 42.23 2.90
319 320 9.996554 AAAATTCTACGTGATCATATGGATGTA 57.003 29.630 0.00 3.17 36.00 2.29
320 321 8.908786 AAAATTCTACGTGATCATATGGATGT 57.091 30.769 0.00 2.17 36.00 3.06
387 388 9.416284 GGATGTATTGGAGGACCTTATTTTAAA 57.584 33.333 0.00 0.00 37.04 1.52
388 389 7.717875 CGGATGTATTGGAGGACCTTATTTTAA 59.282 37.037 0.00 0.00 37.04 1.52
389 390 7.221450 CGGATGTATTGGAGGACCTTATTTTA 58.779 38.462 0.00 0.00 37.04 1.52
390 391 6.062095 CGGATGTATTGGAGGACCTTATTTT 58.938 40.000 0.00 0.00 37.04 1.82
391 392 5.456186 CCGGATGTATTGGAGGACCTTATTT 60.456 44.000 0.00 0.00 37.04 1.40
392 393 4.041691 CCGGATGTATTGGAGGACCTTATT 59.958 45.833 0.00 0.00 37.04 1.40
393 394 3.583086 CCGGATGTATTGGAGGACCTTAT 59.417 47.826 0.00 0.00 37.04 1.73
394 395 2.969950 CCGGATGTATTGGAGGACCTTA 59.030 50.000 0.00 0.00 37.04 2.69
395 396 1.768870 CCGGATGTATTGGAGGACCTT 59.231 52.381 0.00 0.00 37.04 3.50
396 397 1.424638 CCGGATGTATTGGAGGACCT 58.575 55.000 0.00 0.00 37.04 3.85
397 398 0.396811 CCCGGATGTATTGGAGGACC 59.603 60.000 0.73 0.00 0.00 4.46
398 399 1.129058 ACCCGGATGTATTGGAGGAC 58.871 55.000 0.73 0.00 0.00 3.85
399 400 1.887797 AACCCGGATGTATTGGAGGA 58.112 50.000 0.73 0.00 0.00 3.71
400 401 2.092646 TGAAACCCGGATGTATTGGAGG 60.093 50.000 0.73 0.00 0.00 4.30
401 402 3.275617 TGAAACCCGGATGTATTGGAG 57.724 47.619 0.73 0.00 0.00 3.86
402 403 3.722908 TTGAAACCCGGATGTATTGGA 57.277 42.857 0.73 0.00 0.00 3.53
403 404 4.792521 TTTTGAAACCCGGATGTATTGG 57.207 40.909 0.73 0.00 0.00 3.16
404 405 5.810074 GGATTTTTGAAACCCGGATGTATTG 59.190 40.000 0.73 0.00 0.00 1.90
405 406 5.482175 TGGATTTTTGAAACCCGGATGTATT 59.518 36.000 0.73 0.00 0.00 1.89
406 407 5.020132 TGGATTTTTGAAACCCGGATGTAT 58.980 37.500 0.73 0.00 0.00 2.29
407 408 4.218852 GTGGATTTTTGAAACCCGGATGTA 59.781 41.667 0.73 0.00 0.00 2.29
408 409 3.006430 GTGGATTTTTGAAACCCGGATGT 59.994 43.478 0.73 0.00 0.00 3.06
409 410 3.258123 AGTGGATTTTTGAAACCCGGATG 59.742 43.478 0.73 0.00 0.00 3.51
410 411 3.506398 AGTGGATTTTTGAAACCCGGAT 58.494 40.909 0.73 0.00 0.00 4.18
411 412 2.888414 GAGTGGATTTTTGAAACCCGGA 59.112 45.455 0.73 0.00 0.00 5.14
412 413 2.890945 AGAGTGGATTTTTGAAACCCGG 59.109 45.455 0.00 0.00 0.00 5.73
413 414 3.568007 TGAGAGTGGATTTTTGAAACCCG 59.432 43.478 0.00 0.00 0.00 5.28
414 415 4.584743 ACTGAGAGTGGATTTTTGAAACCC 59.415 41.667 0.00 0.00 0.00 4.11
415 416 5.774498 ACTGAGAGTGGATTTTTGAAACC 57.226 39.130 0.00 0.00 0.00 3.27
416 417 7.730364 TCTACTGAGAGTGGATTTTTGAAAC 57.270 36.000 0.00 0.00 30.39 2.78
417 418 7.993183 ACTTCTACTGAGAGTGGATTTTTGAAA 59.007 33.333 0.00 0.00 35.60 2.69
418 419 7.509546 ACTTCTACTGAGAGTGGATTTTTGAA 58.490 34.615 0.00 0.00 35.60 2.69
419 420 7.067496 ACTTCTACTGAGAGTGGATTTTTGA 57.933 36.000 0.00 0.00 35.60 2.69
420 421 7.547370 CCTACTTCTACTGAGAGTGGATTTTTG 59.453 40.741 0.00 0.00 35.60 2.44
421 422 7.455008 TCCTACTTCTACTGAGAGTGGATTTTT 59.545 37.037 0.00 0.00 35.60 1.94
422 423 6.954684 TCCTACTTCTACTGAGAGTGGATTTT 59.045 38.462 0.00 0.00 35.60 1.82
423 424 6.494952 TCCTACTTCTACTGAGAGTGGATTT 58.505 40.000 0.00 0.00 35.60 2.17
424 425 6.080969 TCCTACTTCTACTGAGAGTGGATT 57.919 41.667 0.00 0.00 35.60 3.01
425 426 5.192923 ACTCCTACTTCTACTGAGAGTGGAT 59.807 44.000 0.00 0.00 35.60 3.41
426 427 4.536888 ACTCCTACTTCTACTGAGAGTGGA 59.463 45.833 0.00 0.00 33.72 4.02
427 428 4.850680 ACTCCTACTTCTACTGAGAGTGG 58.149 47.826 0.00 0.00 32.16 4.00
428 429 6.880484 TCTACTCCTACTTCTACTGAGAGTG 58.120 44.000 0.00 0.00 35.00 3.51
429 430 7.470981 CGATCTACTCCTACTTCTACTGAGAGT 60.471 44.444 0.00 0.00 37.00 3.24
430 431 6.866770 CGATCTACTCCTACTTCTACTGAGAG 59.133 46.154 0.00 0.00 31.77 3.20
431 432 6.239373 CCGATCTACTCCTACTTCTACTGAGA 60.239 46.154 0.00 0.00 0.00 3.27
432 433 5.929992 CCGATCTACTCCTACTTCTACTGAG 59.070 48.000 0.00 0.00 0.00 3.35
433 434 5.601729 TCCGATCTACTCCTACTTCTACTGA 59.398 44.000 0.00 0.00 0.00 3.41
434 435 5.856156 TCCGATCTACTCCTACTTCTACTG 58.144 45.833 0.00 0.00 0.00 2.74
435 436 6.572898 CGATCCGATCTACTCCTACTTCTACT 60.573 46.154 6.81 0.00 0.00 2.57
436 437 5.577945 CGATCCGATCTACTCCTACTTCTAC 59.422 48.000 6.81 0.00 0.00 2.59
437 438 5.245751 ACGATCCGATCTACTCCTACTTCTA 59.754 44.000 6.81 0.00 0.00 2.10
438 439 4.040706 ACGATCCGATCTACTCCTACTTCT 59.959 45.833 6.81 0.00 0.00 2.85
439 440 4.317488 ACGATCCGATCTACTCCTACTTC 58.683 47.826 6.81 0.00 0.00 3.01
440 441 4.354893 ACGATCCGATCTACTCCTACTT 57.645 45.455 6.81 0.00 0.00 2.24
441 442 4.066490 CAACGATCCGATCTACTCCTACT 58.934 47.826 6.81 0.00 0.00 2.57
442 443 3.365164 GCAACGATCCGATCTACTCCTAC 60.365 52.174 6.81 0.00 0.00 3.18
443 444 2.812591 GCAACGATCCGATCTACTCCTA 59.187 50.000 6.81 0.00 0.00 2.94
444 445 1.609555 GCAACGATCCGATCTACTCCT 59.390 52.381 6.81 0.00 0.00 3.69
445 446 1.337071 TGCAACGATCCGATCTACTCC 59.663 52.381 6.81 0.00 0.00 3.85
446 447 2.386249 GTGCAACGATCCGATCTACTC 58.614 52.381 6.81 0.00 0.00 2.59
519 520 4.379243 CCTGCGCGGAAGGTCAGT 62.379 66.667 20.25 0.00 33.16 3.41
540 541 4.142881 GCAAGCACTGTTAGTTTAGTAGCC 60.143 45.833 0.00 0.00 0.00 3.93
555 557 1.027357 CACTTGGTCAAGCAAGCACT 58.973 50.000 19.01 0.65 41.99 4.40
793 1123 3.490078 GGAATCCACTCGAGATCTGTGAC 60.490 52.174 21.68 3.35 33.95 3.67
879 1209 4.719273 GCAGGGCTTATATAGAGGAGGAAT 59.281 45.833 0.00 0.00 0.00 3.01
1244 1605 2.103601 AGCAAAGCACATTTCCAAAGCT 59.896 40.909 0.00 0.00 37.08 3.74
1245 1606 2.486918 AGCAAAGCACATTTCCAAAGC 58.513 42.857 0.00 0.00 0.00 3.51
1250 1613 3.243501 TGTCAGAAGCAAAGCACATTTCC 60.244 43.478 0.00 0.00 0.00 3.13
1263 1626 2.417933 AGCAACGATCAATGTCAGAAGC 59.582 45.455 0.00 0.00 0.00 3.86
1412 1776 8.819974 ACATGCTTTTGTCTTTGAATTAAACAG 58.180 29.630 0.00 0.00 0.00 3.16
1484 1851 9.293404 ACTCCTATCTTTTTGGTTAGGTTAAAC 57.707 33.333 0.00 0.00 34.18 2.01
1529 1977 3.519579 CAAAACACTGGTGCATTGTCAA 58.480 40.909 0.00 0.00 0.00 3.18
1561 2011 7.148390 GGAACAGAATTCAGTTAAGAAGCCTAC 60.148 40.741 15.33 0.80 0.00 3.18
1634 2084 8.175069 GCATGAAAAATACTTGTCAGAATCGTA 58.825 33.333 0.00 0.00 32.13 3.43
1719 2176 5.684626 GGCAATTAAGCGAATGAAGATCAAG 59.315 40.000 0.00 0.00 34.64 3.02
1785 2242 3.831323 TGTCCAAAACCACATGACATCT 58.169 40.909 0.00 0.00 31.45 2.90
1923 2380 3.404869 AGTGTAGATGTCCCATCTGGA 57.595 47.619 15.25 0.00 42.41 3.86
2186 2643 2.096248 ACGGTGCCTCTTGTTCAAAAA 58.904 42.857 0.00 0.00 0.00 1.94
2195 2652 0.756903 AGTGTACAACGGTGCCTCTT 59.243 50.000 0.00 0.00 0.00 2.85
2261 2718 7.123397 AGCACTCTTTGAACTCATCATACTCTA 59.877 37.037 0.00 0.00 38.03 2.43
2346 2803 0.807667 CGTTGGCATCTCCTTCCTCG 60.808 60.000 0.00 0.00 35.26 4.63
2388 2845 0.468585 TCCATGATCCTGGCCATTGC 60.469 55.000 5.51 0.00 36.16 3.56
2445 2902 9.747898 ATGAAGTTGTATACCTTAACAATTCCA 57.252 29.630 0.00 0.00 37.87 3.53
2466 2923 5.559148 AGGGAGCAAGTAATAGGATGAAG 57.441 43.478 0.00 0.00 0.00 3.02
2482 2939 7.425606 CAAATACATTGTACCAATAAGGGAGC 58.574 38.462 0.00 0.00 36.54 4.70
2507 2964 8.643324 ACTGAGAGTATGTCCATTTCCTATTAC 58.357 37.037 0.00 0.00 0.00 1.89
2880 3337 2.867109 AAGCAGTGCTATCACCTTGT 57.133 45.000 20.09 0.00 44.16 3.16
2898 3355 2.031508 GCGTTGAGGGAATTGAACGAAA 60.032 45.455 0.00 0.00 42.94 3.46
2973 3430 2.409055 GGCGAGCATTGTGCCATCA 61.409 57.895 10.54 0.00 46.52 3.07
3086 3543 5.559427 TTTATCATCAACCACGATGTTGG 57.441 39.130 17.34 5.29 44.51 3.77
3096 3553 6.152831 AGCTACCAAACCTTTTATCATCAACC 59.847 38.462 0.00 0.00 0.00 3.77
3321 3778 1.527380 GGAACGCCAACCTTGACCA 60.527 57.895 0.00 0.00 0.00 4.02
3396 3853 1.074775 AATTTGGTGGAGGCGCTCA 59.925 52.632 7.64 0.28 31.08 4.26
3420 3877 4.026744 TCTCTAAAGATCCACCTGACCAG 58.973 47.826 0.00 0.00 0.00 4.00
3522 3979 4.024670 AGAGTGATGTTACTGGGTAGACC 58.975 47.826 0.00 0.00 40.81 3.85
3534 3991 7.930865 GCATAGAGAAGGATAAAGAGTGATGTT 59.069 37.037 0.00 0.00 0.00 2.71
3552 4009 1.063341 ACTGGGCTGAGAGCATAGAGA 60.063 52.381 0.00 0.00 44.75 3.10
3603 4060 1.856629 ATTTGGTGAATGGCCTCTGG 58.143 50.000 3.32 0.00 0.00 3.86
4099 4556 1.358759 CAACCGGCAACAAGACCAC 59.641 57.895 0.00 0.00 0.00 4.16
4182 4639 7.952671 TGGTTTCTACTATATCACTTGGCTAG 58.047 38.462 0.00 0.00 0.00 3.42
4367 4824 3.214328 ACGCCTGGATGCCTTTTAATAG 58.786 45.455 0.00 0.00 0.00 1.73
4372 4829 0.251341 AGAACGCCTGGATGCCTTTT 60.251 50.000 0.00 0.00 0.00 2.27
4508 4965 9.590451 CTGTGGTTCATAATTTGCATTAAGAAT 57.410 29.630 2.18 0.00 35.85 2.40
4525 4989 6.068010 ACAAGAAATGGTAATCTGTGGTTCA 58.932 36.000 0.00 0.00 0.00 3.18
4699 5166 5.491078 TCAATAAGATTCAGGGTGGGTTAGT 59.509 40.000 0.00 0.00 0.00 2.24
4707 5181 7.067008 CCGTAAAATGTCAATAAGATTCAGGGT 59.933 37.037 0.00 0.00 0.00 4.34
4713 5187 9.010029 AGTGTTCCGTAAAATGTCAATAAGATT 57.990 29.630 0.00 0.00 0.00 2.40
4718 5192 7.094975 CCTCAAGTGTTCCGTAAAATGTCAATA 60.095 37.037 0.00 0.00 0.00 1.90
4732 5206 0.980423 AGGCTCTCCTCAAGTGTTCC 59.020 55.000 0.00 0.00 38.72 3.62
4815 5297 2.501723 ACACGTGAGCTCCTATTTCCAT 59.498 45.455 25.01 0.00 0.00 3.41
4823 5305 1.531840 AGACCACACGTGAGCTCCT 60.532 57.895 25.01 9.30 0.00 3.69
4839 5321 1.323271 GGCTCCGTCATCTCCACAGA 61.323 60.000 0.00 0.00 0.00 3.41
4861 5343 1.586154 CGTTGCCGAAGCCCAATTCT 61.586 55.000 0.00 0.00 38.69 2.40
4900 5382 2.713531 ATTGGGCCGGCCATATCACC 62.714 60.000 44.46 26.57 37.98 4.02
4901 5383 0.827507 AATTGGGCCGGCCATATCAC 60.828 55.000 44.46 27.32 37.98 3.06
4942 5561 5.361285 CCTCTAAATACTCAGCCCGCTATAT 59.639 44.000 0.00 0.00 0.00 0.86
5042 5668 1.874019 CGACCAGACTTCCATCGCG 60.874 63.158 0.00 0.00 0.00 5.87
5142 5780 6.476378 ACAGCTCACCTTGTTATTCACTTAT 58.524 36.000 0.00 0.00 0.00 1.73


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.