Multiple sequence alignment - TraesCS2A01G209700

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS2A01G209700 chr2A 100.000 2651 0 0 1 2651 193735729 193733079 0.000000e+00 4896
1 TraesCS2A01G209700 chr2A 97.662 556 9 3 2100 2651 193731100 193731655 0.000000e+00 952
2 TraesCS2A01G209700 chr2A 98.467 522 7 1 2131 2651 193728333 193728854 0.000000e+00 918
3 TraesCS2A01G209700 chr2D 92.223 2083 78 25 1 2051 179287383 179285353 0.000000e+00 2872
4 TraesCS2A01G209700 chr2D 97.283 552 14 1 2100 2651 645603004 645602454 0.000000e+00 935
5 TraesCS2A01G209700 chr2B 87.170 1668 95 49 427 2051 236102336 236100745 0.000000e+00 1784
6 TraesCS2A01G209700 chr2B 90.745 443 24 7 1 441 236102781 236102354 2.290000e-160 575
7 TraesCS2A01G209700 chr5A 97.846 557 10 2 2095 2651 435037802 435037248 0.000000e+00 961


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS2A01G209700 chr2A 193733079 193735729 2650 True 4896.0 4896 100.0000 1 2651 1 chr2A.!!$R1 2650
1 TraesCS2A01G209700 chr2A 193728333 193731655 3322 False 935.0 952 98.0645 2100 2651 2 chr2A.!!$F1 551
2 TraesCS2A01G209700 chr2D 179285353 179287383 2030 True 2872.0 2872 92.2230 1 2051 1 chr2D.!!$R1 2050
3 TraesCS2A01G209700 chr2D 645602454 645603004 550 True 935.0 935 97.2830 2100 2651 1 chr2D.!!$R2 551
4 TraesCS2A01G209700 chr2B 236100745 236102781 2036 True 1179.5 1784 88.9575 1 2051 2 chr2B.!!$R1 2050
5 TraesCS2A01G209700 chr5A 435037248 435037802 554 True 961.0 961 97.8460 2095 2651 1 chr5A.!!$R1 556

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
622 665 1.00622 CCGGCCCAAACAAAAGCTC 60.006 57.895 0.0 0.0 0.0 4.09 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2087 2195 0.535335 CGGGCCTGCTACAGTTAGAA 59.465 55.0 0.84 0.0 0.0 2.1 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
131 132 1.239968 CCAACTGTCCAGCCTCTTGC 61.240 60.000 0.00 0.00 41.71 4.01
179 180 9.189156 CTTAATTCTATTTTTCATCACCAGGGA 57.811 33.333 0.00 0.00 0.00 4.20
180 181 7.651027 AATTCTATTTTTCATCACCAGGGAG 57.349 36.000 0.00 0.00 0.00 4.30
289 291 1.606224 GCTTCACCCAAACAATGCCAG 60.606 52.381 0.00 0.00 0.00 4.85
297 299 3.404899 CCAAACAATGCCAGCTTCAATT 58.595 40.909 0.00 0.00 0.00 2.32
302 304 4.901868 ACAATGCCAGCTTCAATTTGAAT 58.098 34.783 12.04 0.00 35.59 2.57
303 305 6.040209 ACAATGCCAGCTTCAATTTGAATA 57.960 33.333 12.04 0.00 35.59 1.75
304 306 6.465948 ACAATGCCAGCTTCAATTTGAATAA 58.534 32.000 12.04 0.00 35.59 1.40
306 308 8.259411 ACAATGCCAGCTTCAATTTGAATAATA 58.741 29.630 12.04 0.00 35.59 0.98
307 309 8.761497 CAATGCCAGCTTCAATTTGAATAATAG 58.239 33.333 12.04 1.91 35.59 1.73
362 364 2.535984 CACAAAGATCCGTGCTCGTATC 59.464 50.000 7.47 6.53 33.61 2.24
573 616 2.786495 CCATCAGAGTCCGTCCGGG 61.786 68.421 0.00 0.00 35.59 5.73
574 617 3.148279 ATCAGAGTCCGTCCGGGC 61.148 66.667 0.00 1.21 40.91 6.13
621 664 3.137687 CCGGCCCAAACAAAAGCT 58.862 55.556 0.00 0.00 0.00 3.74
622 665 1.006220 CCGGCCCAAACAAAAGCTC 60.006 57.895 0.00 0.00 0.00 4.09
623 666 1.006220 CGGCCCAAACAAAAGCTCC 60.006 57.895 0.00 0.00 0.00 4.70
624 667 1.371183 GGCCCAAACAAAAGCTCCC 59.629 57.895 0.00 0.00 0.00 4.30
731 783 3.843240 GCGTCGCCTTCTGCTTCG 61.843 66.667 5.75 0.00 38.05 3.79
732 784 3.843240 CGTCGCCTTCTGCTTCGC 61.843 66.667 0.00 0.00 38.05 4.70
733 785 3.491652 GTCGCCTTCTGCTTCGCC 61.492 66.667 0.00 0.00 38.05 5.54
839 898 1.478510 ACGAGCACTAGCAGCAGTAAT 59.521 47.619 10.05 0.00 45.49 1.89
871 938 1.793134 ATAAGTACGGCGCTCGGAGG 61.793 60.000 19.73 0.00 44.45 4.30
1020 1090 2.019951 GAAGTTCGCGTGCTTCGGA 61.020 57.895 21.87 0.00 40.26 4.55
1102 1175 2.565834 CGAGGGAGGTTCTTCTTTGGTA 59.434 50.000 0.00 0.00 0.00 3.25
1103 1176 3.368531 CGAGGGAGGTTCTTCTTTGGTAG 60.369 52.174 0.00 0.00 0.00 3.18
1104 1177 2.306219 AGGGAGGTTCTTCTTTGGTAGC 59.694 50.000 0.00 0.00 0.00 3.58
1182 1255 1.903783 GCCGCCGCGAAAAAGACTTA 61.904 55.000 15.93 0.00 0.00 2.24
1332 1405 2.517402 CGGTCCTCCTCCTCCTCG 60.517 72.222 0.00 0.00 0.00 4.63
1631 1707 2.356741 CGGTTATGGATGGGTTCCTTGT 60.357 50.000 0.00 0.00 45.68 3.16
1655 1731 1.464997 GAACCGCAAGAAGTGATCCAC 59.535 52.381 0.00 0.00 43.02 4.02
1659 1735 2.154462 CGCAAGAAGTGATCCACCTTT 58.846 47.619 0.00 0.00 43.02 3.11
1660 1736 2.095567 CGCAAGAAGTGATCCACCTTTG 60.096 50.000 0.00 0.00 43.02 2.77
1661 1737 3.149196 GCAAGAAGTGATCCACCTTTGA 58.851 45.455 0.00 0.00 34.49 2.69
1703 1780 7.934665 TCTTTGTTATTTAGCACAGTAGTTCCA 59.065 33.333 0.00 0.00 0.00 3.53
1782 1863 9.436957 AAGACTTAACACTGACAAATATACTGG 57.563 33.333 0.00 0.00 0.00 4.00
1937 2043 1.003262 CAAACTTTGCGATGGTGCGG 61.003 55.000 0.00 0.00 37.81 5.69
2020 2128 5.461526 GGGCTTTCTGTTGTAGTCATTTTC 58.538 41.667 0.00 0.00 0.00 2.29
2028 2136 8.731275 TCTGTTGTAGTCATTTTCTCTTTTGA 57.269 30.769 0.00 0.00 0.00 2.69
2053 2161 9.143631 GACAGGTGAAAGAAATTTATTCCAATG 57.856 33.333 0.00 0.00 0.00 2.82
2055 2163 7.550196 CAGGTGAAAGAAATTTATTCCAATGGG 59.450 37.037 0.00 0.00 0.00 4.00
2056 2164 7.237471 AGGTGAAAGAAATTTATTCCAATGGGT 59.763 33.333 0.00 0.00 34.93 4.51
2058 2166 9.936759 GTGAAAGAAATTTATTCCAATGGGTTA 57.063 29.630 0.00 0.00 34.93 2.85
2060 2168 9.599866 GAAAGAAATTTATTCCAATGGGTTAGG 57.400 33.333 0.00 0.00 34.93 2.69
2061 2169 7.124573 AGAAATTTATTCCAATGGGTTAGGC 57.875 36.000 0.00 0.00 34.93 3.93
2062 2170 6.671779 AGAAATTTATTCCAATGGGTTAGGCA 59.328 34.615 0.00 0.00 34.93 4.75
2063 2171 6.484364 AATTTATTCCAATGGGTTAGGCAG 57.516 37.500 0.00 0.00 34.93 4.85
2064 2172 4.871871 TTATTCCAATGGGTTAGGCAGA 57.128 40.909 0.00 0.00 34.93 4.26
2065 2173 3.756082 ATTCCAATGGGTTAGGCAGAA 57.244 42.857 0.00 0.00 34.93 3.02
2066 2174 2.806945 TCCAATGGGTTAGGCAGAAG 57.193 50.000 0.00 0.00 34.93 2.85
2067 2175 1.106285 CCAATGGGTTAGGCAGAAGC 58.894 55.000 0.00 0.00 41.10 3.86
2068 2176 1.341383 CCAATGGGTTAGGCAGAAGCT 60.341 52.381 0.00 0.00 41.70 3.74
2069 2177 2.450476 CAATGGGTTAGGCAGAAGCTT 58.550 47.619 0.00 0.00 41.70 3.74
2070 2178 2.424956 CAATGGGTTAGGCAGAAGCTTC 59.575 50.000 19.11 19.11 41.70 3.86
2071 2179 1.362224 TGGGTTAGGCAGAAGCTTCT 58.638 50.000 23.49 23.49 41.70 2.85
2072 2180 1.279271 TGGGTTAGGCAGAAGCTTCTC 59.721 52.381 26.18 19.05 41.70 2.87
2073 2181 1.279271 GGGTTAGGCAGAAGCTTCTCA 59.721 52.381 26.18 9.04 41.70 3.27
2074 2182 2.290323 GGGTTAGGCAGAAGCTTCTCAA 60.290 50.000 26.18 14.23 41.70 3.02
2075 2183 3.615155 GGTTAGGCAGAAGCTTCTCAAT 58.385 45.455 26.18 16.00 41.70 2.57
2076 2184 4.384208 GGGTTAGGCAGAAGCTTCTCAATA 60.384 45.833 26.18 15.03 41.70 1.90
2077 2185 4.572795 GGTTAGGCAGAAGCTTCTCAATAC 59.427 45.833 26.18 18.17 41.70 1.89
2078 2186 3.988976 AGGCAGAAGCTTCTCAATACA 57.011 42.857 26.18 0.00 41.70 2.29
2079 2187 4.500499 AGGCAGAAGCTTCTCAATACAT 57.500 40.909 26.18 8.43 41.70 2.29
2080 2188 5.620738 AGGCAGAAGCTTCTCAATACATA 57.379 39.130 26.18 0.00 41.70 2.29
2081 2189 5.609423 AGGCAGAAGCTTCTCAATACATAG 58.391 41.667 26.18 12.53 41.70 2.23
2082 2190 5.130145 AGGCAGAAGCTTCTCAATACATAGT 59.870 40.000 26.18 0.00 41.70 2.12
2083 2191 5.236047 GGCAGAAGCTTCTCAATACATAGTG 59.764 44.000 26.18 12.14 41.70 2.74
2085 2193 6.238049 GCAGAAGCTTCTCAATACATAGTGTG 60.238 42.308 26.18 11.53 34.74 3.82
2086 2194 6.257411 CAGAAGCTTCTCAATACATAGTGTGG 59.743 42.308 26.18 5.51 34.74 4.17
2087 2195 5.683876 AGCTTCTCAATACATAGTGTGGT 57.316 39.130 0.00 0.00 0.00 4.16
2088 2196 6.054860 AGCTTCTCAATACATAGTGTGGTT 57.945 37.500 0.00 0.00 0.00 3.67
2089 2197 6.109359 AGCTTCTCAATACATAGTGTGGTTC 58.891 40.000 0.00 0.00 0.00 3.62
2090 2198 6.070538 AGCTTCTCAATACATAGTGTGGTTCT 60.071 38.462 0.00 0.00 0.00 3.01
2092 2200 7.764443 GCTTCTCAATACATAGTGTGGTTCTAA 59.236 37.037 0.00 0.00 0.00 2.10
2094 2202 8.362464 TCTCAATACATAGTGTGGTTCTAACT 57.638 34.615 0.00 0.00 0.00 2.24
2095 2203 8.251026 TCTCAATACATAGTGTGGTTCTAACTG 58.749 37.037 0.00 0.00 0.00 3.16
2096 2204 7.903145 TCAATACATAGTGTGGTTCTAACTGT 58.097 34.615 0.00 0.00 0.00 3.55
2097 2205 9.027202 TCAATACATAGTGTGGTTCTAACTGTA 57.973 33.333 0.00 0.00 0.00 2.74
2141 2810 4.383861 CCGGAGCAGCTGCACAGA 62.384 66.667 38.24 0.00 45.16 3.41
2145 2814 3.608993 GAGCAGCTGCACAGAGCCT 62.609 63.158 38.24 17.06 44.83 4.58
2426 3097 1.551452 CTTCGTCTCCTGGTCTCCTT 58.449 55.000 0.00 0.00 0.00 3.36
2441 3112 6.605119 TGGTCTCCTTTCTCTGATTTTTCTT 58.395 36.000 0.00 0.00 0.00 2.52
2557 3230 8.722394 GGATTTAGTTTGATTCTTCGTTCTCTT 58.278 33.333 0.00 0.00 0.00 2.85
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
102 103 1.342474 TGGACAGTTGGCAAGGGAAAA 60.342 47.619 0.00 0.00 0.00 2.29
167 168 1.015609 TCCCTACTCCCTGGTGATGA 58.984 55.000 0.00 0.00 0.00 2.92
168 169 1.123928 GTCCCTACTCCCTGGTGATG 58.876 60.000 0.00 0.00 0.00 3.07
169 170 1.019650 AGTCCCTACTCCCTGGTGAT 58.980 55.000 0.00 0.00 0.00 3.06
170 171 0.335361 GAGTCCCTACTCCCTGGTGA 59.665 60.000 0.00 0.00 45.50 4.02
179 180 6.031964 TCTGAATATCTTGGAGTCCCTACT 57.968 41.667 6.74 0.00 39.21 2.57
180 181 6.732896 TTCTGAATATCTTGGAGTCCCTAC 57.267 41.667 6.74 0.00 0.00 3.18
199 201 2.225963 CAGAGTGGAGCTTTGCTTTCTG 59.774 50.000 0.00 2.63 39.88 3.02
200 202 2.502295 CAGAGTGGAGCTTTGCTTTCT 58.498 47.619 0.00 0.00 39.88 2.52
302 304 8.036575 GGGACTGTGTGTTGTATTGTACTATTA 58.963 37.037 0.00 0.00 0.00 0.98
303 305 6.877322 GGGACTGTGTGTTGTATTGTACTATT 59.123 38.462 0.00 0.00 0.00 1.73
304 306 6.403878 GGGACTGTGTGTTGTATTGTACTAT 58.596 40.000 0.00 0.00 0.00 2.12
306 308 4.504340 GGGGACTGTGTGTTGTATTGTACT 60.504 45.833 0.00 0.00 0.00 2.73
307 309 3.749609 GGGGACTGTGTGTTGTATTGTAC 59.250 47.826 0.00 0.00 0.00 2.90
362 364 1.191647 GCGAATTGTATTAGGTCGCGG 59.808 52.381 6.13 0.00 46.27 6.46
485 524 0.661552 TATGTGCTCGCTACTCGGTC 59.338 55.000 0.00 0.00 39.05 4.79
573 616 2.112297 TGGTTGGTTGACCGGAGC 59.888 61.111 9.46 0.00 42.83 4.70
574 617 1.599797 GGTGGTTGGTTGACCGGAG 60.600 63.158 9.46 0.00 42.83 4.63
576 619 2.596338 GGGTGGTTGGTTGACCGG 60.596 66.667 0.00 0.00 42.83 5.28
577 620 2.975799 CGGGTGGTTGGTTGACCG 60.976 66.667 0.00 0.00 42.83 4.79
578 621 2.596338 CCGGGTGGTTGGTTGACC 60.596 66.667 0.00 0.00 40.23 4.02
579 622 3.292159 GCCGGGTGGTTGGTTGAC 61.292 66.667 2.18 0.00 37.67 3.18
603 646 2.664851 GCTTTTGTTTGGGCCGGC 60.665 61.111 21.18 21.18 0.00 6.13
871 938 2.835701 TTCTGATGCTCCGTGTCCGC 62.836 60.000 0.00 0.00 0.00 5.54
1084 1157 2.039879 TGCTACCAAAGAAGAACCTCCC 59.960 50.000 0.00 0.00 0.00 4.30
1087 1160 2.106511 TGCTGCTACCAAAGAAGAACCT 59.893 45.455 0.00 0.00 31.45 3.50
1102 1175 2.046507 CTTCTCGCCCTTGCTGCT 60.047 61.111 0.00 0.00 34.43 4.24
1103 1176 2.359230 ACTTCTCGCCCTTGCTGC 60.359 61.111 0.00 0.00 34.43 5.25
1104 1177 2.097038 CGACTTCTCGCCCTTGCTG 61.097 63.158 0.00 0.00 31.91 4.41
1332 1405 0.307760 CCACTTCCAAGCACAACGAC 59.692 55.000 0.00 0.00 0.00 4.34
1539 1612 4.077188 GACGACGCAACCAGCAGC 62.077 66.667 0.00 0.00 46.13 5.25
1631 1707 0.756294 TCACTTCTTGCGGTTCCTCA 59.244 50.000 0.00 0.00 0.00 3.86
1781 1862 5.278315 GCCGGAACATAAATTATGAACTCCC 60.278 44.000 18.78 10.45 39.45 4.30
1782 1863 5.560183 CGCCGGAACATAAATTATGAACTCC 60.560 44.000 18.78 17.27 39.45 3.85
1794 1896 1.002659 CCCATATCCGCCGGAACATAA 59.997 52.381 11.19 0.00 34.34 1.90
1903 2008 5.758924 CAAAGTTTGGTTTCCACTAGCTAC 58.241 41.667 7.78 0.00 30.78 3.58
1952 2058 2.855180 TCTAAAAGTTACTCGTCCGCG 58.145 47.619 0.00 0.00 39.92 6.46
2020 2128 9.971922 ATAAATTTCTTTCACCTGTCAAAAGAG 57.028 29.630 0.00 0.00 39.45 2.85
2028 2136 8.096414 CCATTGGAATAAATTTCTTTCACCTGT 58.904 33.333 13.02 0.00 0.00 4.00
2053 2161 1.279271 TGAGAAGCTTCTGCCTAACCC 59.721 52.381 33.07 16.05 40.80 4.11
2055 2163 5.178797 TGTATTGAGAAGCTTCTGCCTAAC 58.821 41.667 33.07 21.66 40.80 2.34
2056 2164 5.420725 TGTATTGAGAAGCTTCTGCCTAA 57.579 39.130 33.07 20.54 40.80 2.69
2058 2166 3.988976 TGTATTGAGAAGCTTCTGCCT 57.011 42.857 33.07 17.97 40.80 4.75
2059 2167 5.236047 CACTATGTATTGAGAAGCTTCTGCC 59.764 44.000 33.07 19.62 40.80 4.85
2060 2168 5.814705 ACACTATGTATTGAGAAGCTTCTGC 59.185 40.000 33.07 22.51 37.73 4.26
2061 2169 6.257411 CCACACTATGTATTGAGAAGCTTCTG 59.743 42.308 33.07 17.02 37.73 3.02
2062 2170 6.070538 ACCACACTATGTATTGAGAAGCTTCT 60.071 38.462 28.83 28.83 41.00 2.85
2063 2171 6.109359 ACCACACTATGTATTGAGAAGCTTC 58.891 40.000 19.11 19.11 0.00 3.86
2064 2172 6.054860 ACCACACTATGTATTGAGAAGCTT 57.945 37.500 0.00 0.00 0.00 3.74
2065 2173 5.683876 ACCACACTATGTATTGAGAAGCT 57.316 39.130 0.00 0.00 0.00 3.74
2066 2174 6.109359 AGAACCACACTATGTATTGAGAAGC 58.891 40.000 0.00 0.00 0.00 3.86
2067 2175 9.088512 GTTAGAACCACACTATGTATTGAGAAG 57.911 37.037 0.00 0.00 0.00 2.85
2068 2176 8.812972 AGTTAGAACCACACTATGTATTGAGAA 58.187 33.333 0.00 0.00 0.00 2.87
2069 2177 8.251026 CAGTTAGAACCACACTATGTATTGAGA 58.749 37.037 0.00 0.00 0.00 3.27
2070 2178 8.035394 ACAGTTAGAACCACACTATGTATTGAG 58.965 37.037 0.00 0.00 0.00 3.02
2071 2179 7.903145 ACAGTTAGAACCACACTATGTATTGA 58.097 34.615 0.00 0.00 0.00 2.57
2072 2180 9.302345 CTACAGTTAGAACCACACTATGTATTG 57.698 37.037 0.00 0.00 0.00 1.90
2073 2181 7.980099 GCTACAGTTAGAACCACACTATGTATT 59.020 37.037 0.00 0.00 0.00 1.89
2074 2182 7.123697 TGCTACAGTTAGAACCACACTATGTAT 59.876 37.037 0.00 0.00 0.00 2.29
2075 2183 6.434965 TGCTACAGTTAGAACCACACTATGTA 59.565 38.462 0.00 0.00 0.00 2.29
2076 2184 5.245301 TGCTACAGTTAGAACCACACTATGT 59.755 40.000 0.00 0.00 0.00 2.29
2077 2185 5.720202 TGCTACAGTTAGAACCACACTATG 58.280 41.667 0.00 0.00 0.00 2.23
2078 2186 5.105310 CCTGCTACAGTTAGAACCACACTAT 60.105 44.000 0.00 0.00 0.00 2.12
2079 2187 4.219944 CCTGCTACAGTTAGAACCACACTA 59.780 45.833 0.00 0.00 0.00 2.74
2080 2188 3.006967 CCTGCTACAGTTAGAACCACACT 59.993 47.826 0.00 0.00 0.00 3.55
2081 2189 3.326747 CCTGCTACAGTTAGAACCACAC 58.673 50.000 0.00 0.00 0.00 3.82
2082 2190 2.289444 GCCTGCTACAGTTAGAACCACA 60.289 50.000 0.00 0.00 0.00 4.17
2083 2191 2.347731 GCCTGCTACAGTTAGAACCAC 58.652 52.381 0.00 0.00 0.00 4.16
2085 2193 1.407025 GGGCCTGCTACAGTTAGAACC 60.407 57.143 0.84 0.00 0.00 3.62
2086 2194 1.739371 CGGGCCTGCTACAGTTAGAAC 60.739 57.143 0.84 0.00 0.00 3.01
2087 2195 0.535335 CGGGCCTGCTACAGTTAGAA 59.465 55.000 0.84 0.00 0.00 2.10
2088 2196 0.613853 ACGGGCCTGCTACAGTTAGA 60.614 55.000 12.89 0.00 0.00 2.10
2089 2197 1.108776 TACGGGCCTGCTACAGTTAG 58.891 55.000 12.89 0.00 0.00 2.34
2090 2198 1.411246 CATACGGGCCTGCTACAGTTA 59.589 52.381 12.89 0.00 0.00 2.24
2092 2200 0.976073 ACATACGGGCCTGCTACAGT 60.976 55.000 12.89 0.21 0.00 3.55
2094 2202 1.520192 CACATACGGGCCTGCTACA 59.480 57.895 12.89 0.00 0.00 2.74
2095 2203 1.227556 CCACATACGGGCCTGCTAC 60.228 63.158 12.89 0.00 0.00 3.58
2096 2204 2.439960 CCCACATACGGGCCTGCTA 61.440 63.158 12.89 3.77 40.07 3.49
2097 2205 3.797353 CCCACATACGGGCCTGCT 61.797 66.667 12.89 1.21 40.07 4.24
2349 3020 5.922544 GCTGAGCAGAATTTTATGTGTTTGT 59.077 36.000 0.00 0.00 0.00 2.83
2426 3097 9.081204 TGAATCCATTGAAGAAAAATCAGAGAA 57.919 29.630 0.00 0.00 0.00 2.87
2471 3144 4.572389 CGAATAAATCAGCAGTTGTAGCCT 59.428 41.667 0.00 0.00 0.00 4.58
2557 3230 1.352017 TGCTCTGCTGAGGGATGAAAA 59.648 47.619 20.66 0.00 40.53 2.29


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.