Multiple sequence alignment - TraesCS2A01G207000

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS2A01G207000 chr2A 100.000 7899 0 0 1 7899 186446469 186438571 0.000000e+00 14587.0
1 TraesCS2A01G207000 chr2D 93.478 5106 222 44 512 5574 164387622 164392659 0.000000e+00 7481.0
2 TraesCS2A01G207000 chr2D 94.209 1485 55 17 5724 7192 164393017 164394486 0.000000e+00 2237.0
3 TraesCS2A01G207000 chr2D 89.474 95 10 0 2574 2668 114517660 114517566 3.870000e-23 121.0
4 TraesCS2A01G207000 chr2B 95.067 2007 64 14 512 2512 232799005 232797028 0.000000e+00 3125.0
5 TraesCS2A01G207000 chr2B 92.751 1476 80 15 5724 7185 232793749 232792287 0.000000e+00 2108.0
6 TraesCS2A01G207000 chr2B 91.152 1571 109 22 3945 5502 232795973 232794420 0.000000e+00 2104.0
7 TraesCS2A01G207000 chr2B 91.461 609 24 6 3338 3920 232796576 232795970 0.000000e+00 811.0
8 TraesCS2A01G207000 chr2B 88.197 466 27 8 2835 3297 232797010 232796570 1.510000e-146 531.0
9 TraesCS2A01G207000 chr2B 92.391 184 9 2 5462 5644 232794418 232794239 2.830000e-64 257.0
10 TraesCS2A01G207000 chr2B 87.963 108 13 0 5399 5506 156390869 156390762 2.310000e-25 128.0
11 TraesCS2A01G207000 chr2B 93.902 82 5 0 2590 2671 717368605 717368524 2.990000e-24 124.0
12 TraesCS2A01G207000 chr2B 79.612 103 18 3 1237 1336 232798357 232798255 3.950000e-08 71.3
13 TraesCS2A01G207000 chr7A 93.944 710 38 1 7190 7899 158302576 158301872 0.000000e+00 1068.0
14 TraesCS2A01G207000 chr7A 95.380 671 28 2 7230 7899 158301868 158301200 0.000000e+00 1064.0
15 TraesCS2A01G207000 chr7A 88.000 500 60 0 1 500 736276967 736276468 6.830000e-165 592.0
16 TraesCS2A01G207000 chr7A 89.167 120 11 2 5398 5515 206712641 206712522 1.780000e-31 148.0
17 TraesCS2A01G207000 chr7A 88.660 97 11 0 2572 2668 573432702 573432798 1.390000e-22 119.0
18 TraesCS2A01G207000 chr7A 82.796 93 15 1 5158 5249 195404645 195404737 1.830000e-11 82.4
19 TraesCS2A01G207000 chr1A 91.069 739 34 7 7190 7899 34345429 34346164 0.000000e+00 970.0
20 TraesCS2A01G207000 chr1A 90.270 740 38 6 7190 7899 481633808 481634543 0.000000e+00 937.0
21 TraesCS2A01G207000 chr1A 90.323 155 14 1 4862 5015 171462588 171462434 1.340000e-47 202.0
22 TraesCS2A01G207000 chr1A 85.811 148 17 3 4423 4569 95573365 95573509 3.820000e-33 154.0
23 TraesCS2A01G207000 chr1A 84.354 147 19 2 4424 4569 456369633 456369490 2.970000e-29 141.0
24 TraesCS2A01G207000 chr1A 93.617 94 4 1 2575 2668 365069866 365069957 1.070000e-28 139.0
25 TraesCS2A01G207000 chr3A 90.438 617 34 16 7286 7899 611190480 611189886 0.000000e+00 789.0
26 TraesCS2A01G207000 chr3A 79.933 598 99 14 4433 5015 197847602 197848193 3.410000e-113 420.0
27 TraesCS2A01G207000 chr3A 94.444 108 6 0 5401 5508 503822393 503822286 4.900000e-37 167.0
28 TraesCS2A01G207000 chr3A 92.157 102 5 1 7196 7294 611190972 611190871 2.970000e-29 141.0
29 TraesCS2A01G207000 chr3A 93.617 94 6 0 7334 7427 611192399 611192306 2.970000e-29 141.0
30 TraesCS2A01G207000 chr3A 92.157 102 5 1 7196 7294 611192962 611192861 2.970000e-29 141.0
31 TraesCS2A01G207000 chr3A 97.368 38 1 0 7334 7371 611190405 611190368 1.840000e-06 65.8
32 TraesCS2A01G207000 chr3A 100.000 29 0 0 2750 2778 101329434 101329462 4.000000e-03 54.7
33 TraesCS2A01G207000 chr3A 100.000 29 0 0 7190 7218 269227370 269227398 4.000000e-03 54.7
34 TraesCS2A01G207000 chr4B 94.024 502 30 0 1 502 568582286 568582787 0.000000e+00 761.0
35 TraesCS2A01G207000 chr4B 83.333 144 20 3 4427 4569 140706642 140706782 6.430000e-26 130.0
36 TraesCS2A01G207000 chr7B 91.321 507 35 3 1 506 211121780 211121282 0.000000e+00 684.0
37 TraesCS2A01G207000 chr7B 88.776 98 10 1 2573 2669 3177974 3177877 1.390000e-22 119.0
38 TraesCS2A01G207000 chr5A 88.955 507 55 1 1 506 482671370 482670864 6.730000e-175 625.0
39 TraesCS2A01G207000 chr5A 85.220 318 39 4 4705 5015 582978769 582978453 3.560000e-83 320.0
40 TraesCS2A01G207000 chr5A 88.636 88 9 1 5163 5249 640679435 640679522 1.080000e-18 106.0
41 TraesCS2A01G207000 chr3D 88.645 502 51 1 1 502 555739786 555740281 2.440000e-169 606.0
42 TraesCS2A01G207000 chr3D 85.000 300 44 1 4567 4865 495344260 495344559 3.580000e-78 303.0
43 TraesCS2A01G207000 chr3D 94.444 108 6 0 5401 5508 379826241 379826348 4.900000e-37 167.0
44 TraesCS2A01G207000 chr3D 92.632 95 7 0 2575 2669 2379920 2379826 3.840000e-28 137.0
45 TraesCS2A01G207000 chr3B 87.600 500 56 1 1 500 254144625 254144132 6.870000e-160 575.0
46 TraesCS2A01G207000 chr3B 86.268 284 38 1 4583 4865 140139552 140139835 2.770000e-79 307.0
47 TraesCS2A01G207000 chr3B 87.500 176 19 3 4841 5015 803665985 803665812 4.830000e-47 200.0
48 TraesCS2A01G207000 chr3B 94.444 108 6 0 5401 5508 495475591 495475484 4.900000e-37 167.0
49 TraesCS2A01G207000 chr3B 86.822 129 15 2 4423 4550 577521499 577521626 8.260000e-30 143.0
50 TraesCS2A01G207000 chrUn 85.915 497 70 0 1 497 102571616 102571120 1.510000e-146 531.0
51 TraesCS2A01G207000 chrUn 86.957 115 13 2 5394 5507 90282558 90282671 2.310000e-25 128.0
52 TraesCS2A01G207000 chrUn 80.263 76 12 3 7185 7258 32409492 32409418 4.000000e-03 54.7
53 TraesCS2A01G207000 chr7D 84.615 507 70 4 1 506 94072921 94073420 1.530000e-136 497.0
54 TraesCS2A01G207000 chr7D 91.250 160 11 3 4858 5015 274697600 274697442 1.730000e-51 215.0
55 TraesCS2A01G207000 chr7D 89.375 160 13 4 4858 5015 102552351 102552508 1.740000e-46 198.0
56 TraesCS2A01G207000 chr7D 83.871 93 14 1 5161 5252 188579285 188579193 3.930000e-13 87.9
57 TraesCS2A01G207000 chr7D 100.000 29 0 0 7190 7218 583305735 583305707 4.000000e-03 54.7
58 TraesCS2A01G207000 chr1B 86.316 285 37 2 4583 4865 622367438 622367154 7.700000e-80 309.0
59 TraesCS2A01G207000 chr6D 86.219 283 38 1 4582 4863 28048876 28048594 9.960000e-79 305.0
60 TraesCS2A01G207000 chr6D 84.722 144 18 3 4424 4566 423771214 423771354 2.970000e-29 141.0
61 TraesCS2A01G207000 chr6D 96.970 33 1 0 2749 2781 93219006 93218974 1.000000e-03 56.5
62 TraesCS2A01G207000 chr4D 86.014 286 38 2 4583 4866 1356075 1355790 9.960000e-79 305.0
63 TraesCS2A01G207000 chr4D 91.250 160 11 3 4858 5015 98888250 98888408 1.730000e-51 215.0
64 TraesCS2A01G207000 chr4D 84.028 144 19 3 4427 4569 98888116 98888256 1.380000e-27 135.0
65 TraesCS2A01G207000 chr5D 75.000 360 89 1 148 506 545832420 545832779 1.760000e-36 165.0
66 TraesCS2A01G207000 chr4A 90.179 112 10 1 5398 5508 467684200 467684311 2.300000e-30 145.0
67 TraesCS2A01G207000 chr4A 92.473 93 5 2 2589 2680 55957393 55957302 1.790000e-26 132.0
68 TraesCS2A01G207000 chr4A 82.639 144 21 3 4427 4569 477060832 477060692 2.990000e-24 124.0
69 TraesCS2A01G207000 chr6B 89.720 107 11 0 5401 5507 506389308 506389414 3.840000e-28 137.0
70 TraesCS2A01G207000 chr6B 87.629 97 12 0 2575 2671 364704720 364704816 6.480000e-21 113.0
71 TraesCS2A01G207000 chr5B 87.778 90 8 2 5163 5249 643301843 643301932 1.400000e-17 102.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS2A01G207000 chr2A 186438571 186446469 7898 True 14587.000000 14587 100.000000 1 7899 1 chr2A.!!$R1 7898
1 TraesCS2A01G207000 chr2D 164387622 164394486 6864 False 4859.000000 7481 93.843500 512 7192 2 chr2D.!!$F1 6680
2 TraesCS2A01G207000 chr2B 232792287 232799005 6718 True 1286.757143 3125 90.090143 512 7185 7 chr2B.!!$R3 6673
3 TraesCS2A01G207000 chr7A 158301200 158302576 1376 True 1066.000000 1068 94.662000 7190 7899 2 chr7A.!!$R3 709
4 TraesCS2A01G207000 chr1A 34345429 34346164 735 False 970.000000 970 91.069000 7190 7899 1 chr1A.!!$F1 709
5 TraesCS2A01G207000 chr1A 481633808 481634543 735 False 937.000000 937 90.270000 7190 7899 1 chr1A.!!$F4 709
6 TraesCS2A01G207000 chr3A 197847602 197848193 591 False 420.000000 420 79.933000 4433 5015 1 chr3A.!!$F2 582
7 TraesCS2A01G207000 chr3A 611189886 611192962 3076 True 255.560000 789 93.147400 7196 7899 5 chr3A.!!$R2 703
8 TraesCS2A01G207000 chr4B 568582286 568582787 501 False 761.000000 761 94.024000 1 502 1 chr4B.!!$F2 501
9 TraesCS2A01G207000 chr5A 482670864 482671370 506 True 625.000000 625 88.955000 1 506 1 chr5A.!!$R1 505

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
508 509 0.041090 GGGAAGAAGCCATTGGGGAA 59.959 55.0 4.53 0.0 40.01 3.97 F
1616 1641 0.250295 CTGAGGTTGGTGGCGAGAAA 60.250 55.0 0.00 0.0 0.00 2.52 F
2399 2424 1.021968 GGTTGAAGAAGGTTGCACGT 58.978 50.0 0.00 0.0 0.00 4.49 F
3897 3950 0.179073 CAGACCAAGGGAGGTATGCG 60.179 60.0 0.00 0.0 43.14 4.73 F
5230 5310 0.734889 GCAGCGCCTTACAATCATGT 59.265 50.0 2.29 0.0 43.74 3.21 F
5699 5819 0.034089 CCCCCTCCATGGTCTTTCAC 60.034 60.0 12.58 0.0 0.00 3.18 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1925 1950 0.181114 TGCTAGCCTTGGCATAGTGG 59.819 55.0 13.29 0.0 35.71 4.00 R
2971 2997 0.323178 ATCAGCTGGAGCCCAAACAG 60.323 55.0 15.13 0.0 43.38 3.16 R
4226 4279 0.888619 CGTCTTCAGCTACCTGGACA 59.111 55.0 0.00 0.0 39.61 4.02 R
5680 5800 0.034089 GTGAAAGACCATGGAGGGGG 60.034 60.0 21.47 0.0 43.89 5.40 R
6310 6844 0.038744 AGCCACCCAACTCAATGGAG 59.961 55.0 0.00 0.0 43.54 3.86 R
7075 7619 0.106419 TTCCACAACCCCACTCAACC 60.106 55.0 0.00 0.0 0.00 3.77 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
35 36 1.409064 GCGTCCTCCATAGTGACATCA 59.591 52.381 0.00 0.00 0.00 3.07
36 37 2.544694 GCGTCCTCCATAGTGACATCAG 60.545 54.545 0.00 0.00 0.00 2.90
51 52 2.366590 ACATCAGCTTGGCGATCATCTA 59.633 45.455 0.00 0.00 0.00 1.98
68 69 5.523588 TCATCTAACTCCATGAACTCCTCT 58.476 41.667 0.00 0.00 0.00 3.69
71 72 1.649321 ACTCCATGAACTCCTCTGCA 58.351 50.000 0.00 0.00 0.00 4.41
212 213 4.929819 TGCTTTCAGGTCCTTAAAAACC 57.070 40.909 0.03 0.00 35.69 3.27
360 361 7.411486 TCCTTCTTCTTGATAACTAGTGAGG 57.589 40.000 0.00 0.00 0.00 3.86
364 365 5.717178 TCTTCTTGATAACTAGTGAGGCTGT 59.283 40.000 0.00 0.00 0.00 4.40
434 435 5.536497 AGTTACCCTCAAAATCTTGGGAT 57.464 39.130 3.70 0.00 42.11 3.85
444 445 2.925966 ATCTTGGGATTTGGGCTCAA 57.074 45.000 0.00 0.00 0.00 3.02
471 472 4.657824 ACTCACCAACCGTCGCCG 62.658 66.667 0.00 0.00 0.00 6.46
472 473 4.351938 CTCACCAACCGTCGCCGA 62.352 66.667 0.00 0.00 35.63 5.54
473 474 3.642778 CTCACCAACCGTCGCCGAT 62.643 63.158 0.00 0.00 35.63 4.18
474 475 2.182284 CACCAACCGTCGCCGATA 59.818 61.111 0.00 0.00 35.63 2.92
475 476 1.876714 CACCAACCGTCGCCGATAG 60.877 63.158 0.00 0.00 35.63 2.08
476 477 2.960129 CCAACCGTCGCCGATAGC 60.960 66.667 0.00 0.00 35.63 2.97
488 489 1.387084 GCCGATAGCGCTTTAATCTCG 59.613 52.381 18.68 14.29 35.83 4.04
489 490 1.986378 CCGATAGCGCTTTAATCTCGG 59.014 52.381 18.68 19.09 38.31 4.63
490 491 1.986378 CGATAGCGCTTTAATCTCGGG 59.014 52.381 18.68 0.00 0.00 5.14
491 492 2.338500 GATAGCGCTTTAATCTCGGGG 58.662 52.381 18.68 0.00 0.00 5.73
492 493 1.405872 TAGCGCTTTAATCTCGGGGA 58.594 50.000 18.68 0.00 0.00 4.81
493 494 0.539986 AGCGCTTTAATCTCGGGGAA 59.460 50.000 2.64 0.00 0.00 3.97
494 495 0.938008 GCGCTTTAATCTCGGGGAAG 59.062 55.000 0.00 0.00 0.00 3.46
495 496 1.472728 GCGCTTTAATCTCGGGGAAGA 60.473 52.381 0.00 0.00 0.00 2.87
496 497 2.901249 CGCTTTAATCTCGGGGAAGAA 58.099 47.619 0.00 0.00 0.00 2.52
497 498 2.866762 CGCTTTAATCTCGGGGAAGAAG 59.133 50.000 0.00 0.00 0.00 2.85
498 499 2.614520 GCTTTAATCTCGGGGAAGAAGC 59.385 50.000 7.25 7.25 33.52 3.86
499 500 3.206964 CTTTAATCTCGGGGAAGAAGCC 58.793 50.000 0.00 0.00 0.00 4.35
500 501 1.874129 TAATCTCGGGGAAGAAGCCA 58.126 50.000 0.00 0.00 0.00 4.75
501 502 1.216990 AATCTCGGGGAAGAAGCCAT 58.783 50.000 0.00 0.00 0.00 4.40
502 503 1.216990 ATCTCGGGGAAGAAGCCATT 58.783 50.000 0.00 0.00 0.00 3.16
503 504 0.253044 TCTCGGGGAAGAAGCCATTG 59.747 55.000 0.00 0.00 0.00 2.82
504 505 0.749454 CTCGGGGAAGAAGCCATTGG 60.749 60.000 0.00 0.00 0.00 3.16
505 506 1.754234 CGGGGAAGAAGCCATTGGG 60.754 63.158 4.53 0.00 37.18 4.12
506 507 1.381735 GGGGAAGAAGCCATTGGGG 60.382 63.158 4.53 0.00 40.85 4.96
507 508 1.697297 GGGAAGAAGCCATTGGGGA 59.303 57.895 4.53 0.00 40.01 4.81
508 509 0.041090 GGGAAGAAGCCATTGGGGAA 59.959 55.000 4.53 0.00 40.01 3.97
509 510 1.478631 GGAAGAAGCCATTGGGGAAG 58.521 55.000 4.53 0.00 40.01 3.46
510 511 1.005924 GGAAGAAGCCATTGGGGAAGA 59.994 52.381 4.53 0.00 40.01 2.87
552 553 2.172851 AATTCGTAGTGTGGCGGAAA 57.827 45.000 0.00 0.00 0.00 3.13
558 559 0.981183 TAGTGTGGCGGAAAGGTGAT 59.019 50.000 0.00 0.00 0.00 3.06
561 562 0.605319 TGTGGCGGAAAGGTGATGTC 60.605 55.000 0.00 0.00 0.00 3.06
573 574 4.292186 AGGTGATGTCATTTGCTGTAGT 57.708 40.909 0.00 0.00 0.00 2.73
584 585 0.764890 TGCTGTAGTTTGCCTGGACT 59.235 50.000 0.00 0.00 0.00 3.85
599 600 4.349503 ACTGGGCCTCGCATGCAA 62.350 61.111 19.57 0.00 0.00 4.08
609 610 2.405805 CGCATGCAACGGGGAATGA 61.406 57.895 19.57 0.00 0.00 2.57
621 622 1.618074 GGGGAATGAGCTGAAGCCTTT 60.618 52.381 0.00 0.00 43.38 3.11
646 647 1.643286 TCAGGGCCCATGTTCCATAAA 59.357 47.619 27.56 0.00 0.00 1.40
650 651 3.103742 GGGCCCATGTTCCATAAAAGAA 58.896 45.455 19.95 0.00 0.00 2.52
680 681 2.217750 CTGTCCACCAACGTTCAATGA 58.782 47.619 0.00 0.00 0.00 2.57
745 746 2.682856 ACCCTACAATAAATGCACGCAG 59.317 45.455 0.00 0.00 0.00 5.18
779 780 0.321210 TGCAATGACCATCGAACGGT 60.321 50.000 9.50 9.50 40.30 4.83
792 793 3.606065 AACGGTCGAGACGCCTTCG 62.606 63.158 9.14 0.00 42.43 3.79
1139 1158 4.549516 GACGCCGAGCCCGTAGAC 62.550 72.222 0.00 0.00 39.30 2.59
1142 1161 3.818787 GCCGAGCCCGTAGACGAA 61.819 66.667 3.07 0.00 43.02 3.85
1143 1162 2.879907 CCGAGCCCGTAGACGAAA 59.120 61.111 3.07 0.00 43.02 3.46
1391 1413 4.436998 AAAGTCGAGGCGGCGGAG 62.437 66.667 9.78 0.00 36.23 4.63
1405 1427 2.436824 GGAGGCCAAGGTCGAAGC 60.437 66.667 5.01 0.00 0.00 3.86
1616 1641 0.250295 CTGAGGTTGGTGGCGAGAAA 60.250 55.000 0.00 0.00 0.00 2.52
2399 2424 1.021968 GGTTGAAGAAGGTTGCACGT 58.978 50.000 0.00 0.00 0.00 4.49
2528 2553 7.408756 TGCCTTGCTGAATTAATGACTTTAT 57.591 32.000 0.00 0.00 0.00 1.40
2529 2554 8.518430 TGCCTTGCTGAATTAATGACTTTATA 57.482 30.769 0.00 0.00 0.00 0.98
2544 2569 6.563422 TGACTTTATATGCATGCTTTCAACC 58.437 36.000 20.33 1.54 0.00 3.77
2551 2576 5.601583 ATGCATGCTTTCAACCATGATAA 57.398 34.783 20.33 0.00 40.92 1.75
2552 2577 4.746729 TGCATGCTTTCAACCATGATAAC 58.253 39.130 20.33 0.00 40.92 1.89
2554 2579 5.047164 TGCATGCTTTCAACCATGATAACTT 60.047 36.000 20.33 0.00 40.92 2.66
2556 2581 5.389859 TGCTTTCAACCATGATAACTTGG 57.610 39.130 0.00 3.64 43.95 3.61
2557 2582 4.176271 GCTTTCAACCATGATAACTTGGC 58.824 43.478 4.98 0.00 42.70 4.52
2560 2585 6.183360 GCTTTCAACCATGATAACTTGGCTAT 60.183 38.462 4.98 0.00 42.70 2.97
2584 2609 8.783660 ATCCTGATTTGTAACTACTCCATCTA 57.216 34.615 0.00 0.00 0.00 1.98
2587 2612 8.642432 CCTGATTTGTAACTACTCCATCTATCA 58.358 37.037 0.00 0.00 0.00 2.15
2716 2741 7.288389 AGGTTTGCATCATATGTGGTGATTTAT 59.712 33.333 6.93 0.00 38.83 1.40
2730 2755 5.591472 TGGTGATTTATTGGATGCAGAAGAG 59.409 40.000 0.00 0.00 0.00 2.85
2745 2770 3.517100 CAGAAGAGTTGGGATTGAGAGGA 59.483 47.826 0.00 0.00 0.00 3.71
2782 2807 7.436376 GCTTGAGGTTATGAATTATTTTCTGCC 59.564 37.037 0.00 0.00 0.00 4.85
2805 2830 4.551990 CGTAGGTTTTGCATGCTAATACCG 60.552 45.833 24.79 16.28 0.00 4.02
2822 2847 9.821662 GCTAATACCGTTTGATAAATGATAACC 57.178 33.333 0.00 0.00 0.00 2.85
2833 2858 8.801882 TGATAAATGATAACCGAGGAAAAGTT 57.198 30.769 0.00 0.00 0.00 2.66
2885 2910 9.540538 TCCCATTTTTACTCAAATCCTGAATTA 57.459 29.630 0.00 0.00 32.17 1.40
2915 2940 8.425577 AATGCACTGTAGTCTATTTGTGATAC 57.574 34.615 11.52 0.00 0.00 2.24
2982 3008 6.767902 TGAAATATCAGATACTGTTTGGGCTC 59.232 38.462 0.00 0.00 32.61 4.70
3068 3094 7.686438 ATGCTTTTATTTTCCCAAATCCAAC 57.314 32.000 0.00 0.00 34.29 3.77
3139 3165 9.653287 TTTGTGATAGTACTGTGAGGATTTAAG 57.347 33.333 5.39 0.00 0.00 1.85
3158 3184 7.961325 TTTAAGTTGGAATTTCTCATTTGCC 57.039 32.000 0.00 0.00 0.00 4.52
3170 3196 5.708736 TCTCATTTGCCCTTTATGACCTA 57.291 39.130 0.00 0.00 0.00 3.08
3171 3197 6.073447 TCTCATTTGCCCTTTATGACCTAA 57.927 37.500 0.00 0.00 0.00 2.69
3176 3202 8.257306 TCATTTGCCCTTTATGACCTAATTTTC 58.743 33.333 0.00 0.00 0.00 2.29
3178 3204 7.790782 TTGCCCTTTATGACCTAATTTTCTT 57.209 32.000 0.00 0.00 0.00 2.52
3182 3208 8.935844 GCCCTTTATGACCTAATTTTCTTTTTG 58.064 33.333 0.00 0.00 0.00 2.44
3244 3271 5.394883 CCATTGTACTTTTAGAGGGCGAGTA 60.395 44.000 0.00 0.00 0.00 2.59
3246 3273 5.258456 TGTACTTTTAGAGGGCGAGTATG 57.742 43.478 0.00 0.00 0.00 2.39
3255 3282 1.458967 GGCGAGTATGGTACCCCCT 60.459 63.158 10.07 1.76 0.00 4.79
3296 3323 9.143155 AGTTTGTTCCTACCATTTTGTATTTCT 57.857 29.630 0.00 0.00 0.00 2.52
3375 3402 1.892474 TGCAAAGTTGGTTATCTGGGC 59.108 47.619 0.00 0.00 0.00 5.36
3401 3428 7.924103 AAAAGCTATTTACTTTTTGTGGTCG 57.076 32.000 0.00 0.00 43.08 4.79
3576 3603 9.153721 TCTTTATGTTTGATCAATTGCATTTCC 57.846 29.630 19.00 0.00 0.00 3.13
3602 3629 8.708742 CAGATCAATGCAGCATTTATTTTATGG 58.291 33.333 18.48 4.06 31.05 2.74
3682 3735 8.258007 TCTCTTAATAAAGCTGCTTACTTGCTA 58.742 33.333 16.31 3.47 35.85 3.49
3694 3747 7.065204 GCTGCTTACTTGCTAAAAGTTCTAGAT 59.935 37.037 0.00 0.00 0.00 1.98
3702 3755 7.891183 TGCTAAAAGTTCTAGATTGACTGAC 57.109 36.000 0.00 0.00 0.00 3.51
3753 3806 5.885230 TCTGAATGCATGGTTTGAACTAG 57.115 39.130 0.00 0.00 0.00 2.57
3826 3879 8.772250 GGGATGTCCAGGAATGATATAAAGATA 58.228 37.037 0.86 0.00 37.91 1.98
3897 3950 0.179073 CAGACCAAGGGAGGTATGCG 60.179 60.000 0.00 0.00 43.14 4.73
4073 4126 6.210078 TCACCAATTTTACAAGCTTTTACCG 58.790 36.000 0.00 0.00 0.00 4.02
4226 4279 6.659824 AGGAACAAAGTTATCCAATATCCGT 58.340 36.000 5.39 0.00 35.62 4.69
4319 4372 6.817765 TGAATACCACTCTGAACAAATTCC 57.182 37.500 0.00 0.00 33.49 3.01
4414 4467 6.621596 GCTTGTTTGGTCATCTGTATGTTCTC 60.622 42.308 0.00 0.00 34.50 2.87
4415 4468 6.114187 TGTTTGGTCATCTGTATGTTCTCT 57.886 37.500 0.00 0.00 34.50 3.10
4436 4490 3.416351 GCCTTAGGCCTCCTTGGT 58.584 61.111 9.68 0.00 44.06 3.67
4450 4507 4.660771 CCTCCTTGGTTTCATAGGATAGGT 59.339 45.833 0.00 0.00 37.44 3.08
4483 4541 9.934784 TGGGAATAGGAAAATCATAGAATTGAA 57.065 29.630 0.00 0.00 0.00 2.69
4581 4639 4.838046 GCTAAGGCCTCCTTCGAC 57.162 61.111 5.23 0.00 43.57 4.20
4638 4708 8.650490 AGAAAATTTTCCTTTAGAGCCATTTGA 58.350 29.630 24.01 0.00 37.92 2.69
4645 4715 8.593945 TTCCTTTAGAGCCATTTGATTTGTAT 57.406 30.769 0.00 0.00 0.00 2.29
4691 4761 3.823304 GGAATTATCCCTGTTCTCCATGC 59.177 47.826 0.00 0.00 40.10 4.06
4693 4763 3.845781 TTATCCCTGTTCTCCATGCTC 57.154 47.619 0.00 0.00 0.00 4.26
4698 4768 2.517959 CCTGTTCTCCATGCTCCAAAA 58.482 47.619 0.00 0.00 0.00 2.44
4700 4770 2.490903 CTGTTCTCCATGCTCCAAAAGG 59.509 50.000 0.00 0.00 0.00 3.11
4798 4869 8.788325 CTATTCATAGGATTTGAGATGCATGA 57.212 34.615 2.46 0.00 0.00 3.07
4873 4948 5.011023 ACCAAAAGAGGCCTAATGTTTTCTG 59.989 40.000 4.42 6.03 0.00 3.02
5015 5092 1.777878 TCCTGTAAACCAAAGGAGGCA 59.222 47.619 0.00 0.00 35.14 4.75
5023 5100 4.717279 AACCAAAGGAGGCAGTACTAAA 57.283 40.909 0.00 0.00 0.00 1.85
5077 5156 3.505680 TCATGTAAGTTGGTGGTGAATGC 59.494 43.478 0.00 0.00 0.00 3.56
5097 5176 1.152963 AGTTTGCGGCACACCTCTT 60.153 52.632 15.13 0.00 0.00 2.85
5119 5198 1.011595 TTCCTGGCCTCTCTCTACCT 58.988 55.000 3.32 0.00 0.00 3.08
5126 5205 2.661718 GCCTCTCTCTACCTAAGTGCT 58.338 52.381 0.00 0.00 0.00 4.40
5129 5208 3.630312 CCTCTCTCTACCTAAGTGCTGTC 59.370 52.174 0.00 0.00 0.00 3.51
5136 5215 6.267928 TCTCTACCTAAGTGCTGTCTTTCTTT 59.732 38.462 0.00 0.00 0.00 2.52
5138 5217 7.959175 TCTACCTAAGTGCTGTCTTTCTTTTA 58.041 34.615 0.00 0.00 0.00 1.52
5140 5219 9.871238 CTACCTAAGTGCTGTCTTTCTTTTATA 57.129 33.333 0.00 0.00 0.00 0.98
5196 5276 0.748005 TCCCGCTTTGGATGCTTAGC 60.748 55.000 0.00 0.00 42.00 3.09
5197 5277 1.031571 CCCGCTTTGGATGCTTAGCA 61.032 55.000 10.09 10.09 42.00 3.49
5230 5310 0.734889 GCAGCGCCTTACAATCATGT 59.265 50.000 2.29 0.00 43.74 3.21
5252 5332 2.423577 CACTTTAGGCGCTTAGGTGTT 58.576 47.619 19.10 0.00 0.00 3.32
5253 5333 2.812011 CACTTTAGGCGCTTAGGTGTTT 59.188 45.455 19.10 0.00 0.00 2.83
5310 5390 4.561452 GCCTTAGGCTGCCTTACC 57.439 61.111 28.55 9.41 46.69 2.85
5316 5396 2.148446 TAGGCTGCCTTACCGTCTTA 57.852 50.000 28.55 1.54 34.61 2.10
5319 5399 3.036091 AGGCTGCCTTACCGTCTTATAA 58.964 45.455 17.22 0.00 0.00 0.98
5321 5401 4.102681 AGGCTGCCTTACCGTCTTATAAAT 59.897 41.667 17.22 0.00 0.00 1.40
5327 5409 7.221450 TGCCTTACCGTCTTATAAATAATGCT 58.779 34.615 0.00 0.00 0.00 3.79
5391 5473 5.824624 CCTCCTTGTAGTGTATGCAATGATT 59.175 40.000 0.00 0.00 32.69 2.57
5479 5598 6.761099 ACGTCTAGATACATCTGTTTGAGT 57.239 37.500 0.00 0.00 37.76 3.41
5484 5603 7.700234 GTCTAGATACATCTGTTTGAGTGACAG 59.300 40.741 0.00 0.00 44.54 3.51
5578 5698 6.771188 GCTGTCTTAAGCATGAATACGTAT 57.229 37.500 1.14 1.14 43.01 3.06
5579 5699 6.584954 GCTGTCTTAAGCATGAATACGTATG 58.415 40.000 9.24 0.00 43.01 2.39
5610 5730 7.094805 TGGAAAAAGTAGCAACACATAGCTTAG 60.095 37.037 0.00 0.00 42.05 2.18
5627 5747 6.174720 AGCTTAGCTTGTGTATGGCTAATA 57.825 37.500 0.00 0.00 44.18 0.98
5640 5760 7.171678 GTGTATGGCTAATAGATTGTCCTGTTC 59.828 40.741 0.00 0.00 0.00 3.18
5644 5764 3.914426 AATAGATTGTCCTGTTCGCCT 57.086 42.857 0.00 0.00 0.00 5.52
5645 5765 3.914426 ATAGATTGTCCTGTTCGCCTT 57.086 42.857 0.00 0.00 0.00 4.35
5646 5766 2.100605 AGATTGTCCTGTTCGCCTTC 57.899 50.000 0.00 0.00 0.00 3.46
5647 5767 1.347707 AGATTGTCCTGTTCGCCTTCA 59.652 47.619 0.00 0.00 0.00 3.02
5648 5768 2.151202 GATTGTCCTGTTCGCCTTCAA 58.849 47.619 0.00 0.00 0.00 2.69
5649 5769 2.270352 TTGTCCTGTTCGCCTTCAAT 57.730 45.000 0.00 0.00 0.00 2.57
5650 5770 2.270352 TGTCCTGTTCGCCTTCAATT 57.730 45.000 0.00 0.00 0.00 2.32
5651 5771 2.582052 TGTCCTGTTCGCCTTCAATTT 58.418 42.857 0.00 0.00 0.00 1.82
5652 5772 2.955660 TGTCCTGTTCGCCTTCAATTTT 59.044 40.909 0.00 0.00 0.00 1.82
5653 5773 3.243367 TGTCCTGTTCGCCTTCAATTTTG 60.243 43.478 0.00 0.00 0.00 2.44
5654 5774 2.955660 TCCTGTTCGCCTTCAATTTTGT 59.044 40.909 0.00 0.00 0.00 2.83
5655 5775 3.052036 CCTGTTCGCCTTCAATTTTGTG 58.948 45.455 0.00 0.00 0.00 3.33
5656 5776 3.052036 CTGTTCGCCTTCAATTTTGTGG 58.948 45.455 0.00 0.00 0.00 4.17
5657 5777 2.690497 TGTTCGCCTTCAATTTTGTGGA 59.310 40.909 8.48 0.00 0.00 4.02
5658 5778 3.131223 TGTTCGCCTTCAATTTTGTGGAA 59.869 39.130 8.48 0.00 0.00 3.53
5659 5779 4.202202 TGTTCGCCTTCAATTTTGTGGAAT 60.202 37.500 8.48 0.00 0.00 3.01
5660 5780 3.911868 TCGCCTTCAATTTTGTGGAATG 58.088 40.909 8.48 0.00 0.00 2.67
5661 5781 3.320541 TCGCCTTCAATTTTGTGGAATGT 59.679 39.130 8.48 0.00 0.00 2.71
5662 5782 4.057432 CGCCTTCAATTTTGTGGAATGTT 58.943 39.130 8.48 0.00 0.00 2.71
5663 5783 4.150451 CGCCTTCAATTTTGTGGAATGTTC 59.850 41.667 8.48 0.00 0.00 3.18
5664 5784 5.299949 GCCTTCAATTTTGTGGAATGTTCT 58.700 37.500 8.48 0.00 0.00 3.01
5665 5785 6.454795 GCCTTCAATTTTGTGGAATGTTCTA 58.545 36.000 8.48 0.00 0.00 2.10
5666 5786 6.587608 GCCTTCAATTTTGTGGAATGTTCTAG 59.412 38.462 8.48 0.00 0.00 2.43
5667 5787 7.523709 GCCTTCAATTTTGTGGAATGTTCTAGA 60.524 37.037 0.00 0.00 0.00 2.43
5668 5788 8.526147 CCTTCAATTTTGTGGAATGTTCTAGAT 58.474 33.333 0.00 0.00 0.00 1.98
5674 5794 7.681939 TTTGTGGAATGTTCTAGATAACACC 57.318 36.000 0.00 0.00 41.89 4.16
5675 5795 5.741011 TGTGGAATGTTCTAGATAACACCC 58.259 41.667 0.00 5.45 41.89 4.61
5676 5796 5.123936 GTGGAATGTTCTAGATAACACCCC 58.876 45.833 12.04 10.48 41.89 4.95
5677 5797 4.165372 TGGAATGTTCTAGATAACACCCCC 59.835 45.833 12.04 8.78 41.89 5.40
5698 5818 2.397815 CCCCCTCCATGGTCTTTCA 58.602 57.895 12.58 0.00 0.00 2.69
5699 5819 0.034089 CCCCCTCCATGGTCTTTCAC 60.034 60.000 12.58 0.00 0.00 3.18
5700 5820 0.392998 CCCCTCCATGGTCTTTCACG 60.393 60.000 12.58 0.00 0.00 4.35
5701 5821 0.324943 CCCTCCATGGTCTTTCACGT 59.675 55.000 12.58 0.00 0.00 4.49
5702 5822 1.271379 CCCTCCATGGTCTTTCACGTT 60.271 52.381 12.58 0.00 0.00 3.99
5703 5823 1.806542 CCTCCATGGTCTTTCACGTTG 59.193 52.381 12.58 0.00 0.00 4.10
5704 5824 2.549992 CCTCCATGGTCTTTCACGTTGA 60.550 50.000 12.58 0.00 0.00 3.18
5705 5825 3.138304 CTCCATGGTCTTTCACGTTGAA 58.862 45.455 12.58 0.00 34.03 2.69
5720 6168 5.635280 TCACGTTGAAGCATCTTAAAGAGAG 59.365 40.000 0.00 0.00 37.93 3.20
5908 6441 5.656480 TGGCTTACCTTTTTGAACTGTTTC 58.344 37.500 0.00 0.00 36.63 2.78
5933 6466 1.207488 TTATGGTGTGCTCCCCTGCT 61.207 55.000 0.00 0.00 0.00 4.24
5936 6469 1.531602 GGTGTGCTCCCCTGCTTTT 60.532 57.895 0.00 0.00 0.00 2.27
6015 6549 6.509418 TTGGCTTGTTTCTATGTATTCCAC 57.491 37.500 0.00 0.00 0.00 4.02
6023 6557 8.257602 TGTTTCTATGTATTCCACTATGCCTA 57.742 34.615 0.00 0.00 0.00 3.93
6028 6562 9.725019 TCTATGTATTCCACTATGCCTATTTTG 57.275 33.333 0.00 0.00 0.00 2.44
6036 6570 5.182001 CCACTATGCCTATTTTGTATGGAGC 59.818 44.000 0.00 0.00 0.00 4.70
6109 6643 6.017275 GCATTTTCTCATCTGATCCGAGATTT 60.017 38.462 8.11 0.00 35.79 2.17
6144 6678 4.430908 AGTAATAACTGTAAGCTGTCCGC 58.569 43.478 0.00 0.00 37.60 5.54
6145 6679 1.922570 ATAACTGTAAGCTGTCCGCG 58.077 50.000 0.00 0.00 45.59 6.46
6163 6697 1.871080 CGCACCAAGTCTTGAGAAGT 58.129 50.000 14.42 0.34 0.00 3.01
6178 6712 1.607801 GAAGTTGCCCAAGATGCCCC 61.608 60.000 0.00 0.00 0.00 5.80
6214 6748 3.944055 AGTTGCTGTCAGAAGATACGT 57.056 42.857 3.32 0.00 0.00 3.57
6259 6793 6.071616 GCACCCCTGAAGATAAATTTACACAA 60.072 38.462 0.00 0.00 0.00 3.33
6411 6945 1.403679 CAGTTCAGGAGACGAGCTAGG 59.596 57.143 0.00 0.00 0.00 3.02
6568 7102 0.773644 AGATACCCACCCATGCATCC 59.226 55.000 0.00 0.00 0.00 3.51
6614 7148 3.335786 TCTGAGGTGGGTAGAGGTTAGAA 59.664 47.826 0.00 0.00 0.00 2.10
6694 7228 6.687081 TTCTCGAGTAATTGTTTGGTGTTT 57.313 33.333 13.13 0.00 0.00 2.83
6790 7324 1.749609 GCTTGTATCGGTTCGGTCGC 61.750 60.000 0.00 0.00 0.00 5.19
6842 7376 4.122776 CTCTATCGGCTATTGCAGTGTTT 58.877 43.478 0.66 0.00 41.91 2.83
6957 7491 4.690748 CGGCCCTGTTATTGATATGTAGTG 59.309 45.833 0.00 0.00 0.00 2.74
6991 7525 3.994392 GTGTTTCGTGATTCCTTGAGCTA 59.006 43.478 0.00 0.00 0.00 3.32
7033 7577 2.742372 CGCAAGGCCGCTACAGTT 60.742 61.111 0.00 0.00 0.00 3.16
7039 7583 0.324460 AGGCCGCTACAGTTCTACCT 60.324 55.000 0.00 0.00 0.00 3.08
7065 7609 2.190981 CACTAGGTACCGCGAATGTTC 58.809 52.381 8.23 0.00 0.00 3.18
7066 7610 1.820519 ACTAGGTACCGCGAATGTTCA 59.179 47.619 8.23 0.00 0.00 3.18
7068 7612 3.633525 ACTAGGTACCGCGAATGTTCATA 59.366 43.478 8.23 0.00 0.00 2.15
7069 7613 3.746045 AGGTACCGCGAATGTTCATAT 57.254 42.857 8.23 0.00 0.00 1.78
7070 7614 4.859304 AGGTACCGCGAATGTTCATATA 57.141 40.909 8.23 0.00 0.00 0.86
7071 7615 4.806330 AGGTACCGCGAATGTTCATATAG 58.194 43.478 8.23 0.00 0.00 1.31
7072 7616 4.521639 AGGTACCGCGAATGTTCATATAGA 59.478 41.667 8.23 0.00 0.00 1.98
7074 7618 5.867716 GGTACCGCGAATGTTCATATAGAAT 59.132 40.000 8.23 0.00 38.76 2.40
7075 7619 5.845985 ACCGCGAATGTTCATATAGAATG 57.154 39.130 8.23 0.00 38.76 2.67
7076 7620 4.690748 ACCGCGAATGTTCATATAGAATGG 59.309 41.667 8.23 0.00 38.76 3.16
7077 7621 4.690748 CCGCGAATGTTCATATAGAATGGT 59.309 41.667 8.23 0.00 38.76 3.55
7078 7622 5.179368 CCGCGAATGTTCATATAGAATGGTT 59.821 40.000 8.23 0.00 38.76 3.67
7106 7650 2.482864 GTTGTGGAAATTGCTGTTGGG 58.517 47.619 0.00 0.00 0.00 4.12
7129 7673 5.394773 GGGCTCGGCTTTTGGAATAAAAATA 60.395 40.000 0.00 0.00 0.00 1.40
7185 7731 3.807071 TGTACACACATTGCACTACACTG 59.193 43.478 0.00 0.00 35.17 3.66
7212 7758 5.543507 TCCAAAACAATAAGGTGTGCATT 57.456 34.783 0.00 0.00 0.00 3.56
7217 7763 6.909550 AAACAATAAGGTGTGCATTAAGGA 57.090 33.333 0.00 0.00 0.00 3.36
7317 8926 2.968574 TCTACCGTCCCGAGATAGTACT 59.031 50.000 0.00 0.00 0.00 2.73
7322 8931 1.674962 GTCCCGAGATAGTACTTGCGT 59.325 52.381 0.00 0.00 0.00 5.24
7339 8975 5.533528 ACTTGCGTTGGTAAAACTTTCCTAT 59.466 36.000 0.00 0.00 0.00 2.57
7380 9017 3.060602 CGCGACCTCTTCTCTTTCTTTT 58.939 45.455 0.00 0.00 0.00 2.27
7398 9035 2.233305 TTACCTCTGACCTCTCCCAC 57.767 55.000 0.00 0.00 0.00 4.61
7423 9060 2.461945 CGCGACCTCGAGCTCTACA 61.462 63.158 12.85 0.00 43.02 2.74
7591 11179 1.831736 CCTCGTGGTCCTTCATTACCT 59.168 52.381 0.00 0.00 36.67 3.08
7595 11183 2.028476 CGTGGTCCTTCATTACCTCACA 60.028 50.000 0.00 0.00 36.67 3.58
7599 11187 4.104102 TGGTCCTTCATTACCTCACACTTT 59.896 41.667 0.00 0.00 36.67 2.66
7695 11283 4.156622 CGTCGACGGCGTGCTCTA 62.157 66.667 29.70 0.00 38.98 2.43
7761 11349 3.950794 CTTGGTTCTAGCGGCGGCA 62.951 63.158 19.21 3.77 43.41 5.69
7800 11388 0.110486 GGGAAGTGAAGCAAGGTGGA 59.890 55.000 0.00 0.00 0.00 4.02
7804 11392 0.546122 AGTGAAGCAAGGTGGACACA 59.454 50.000 4.69 0.00 0.00 3.72
7871 11459 2.048127 GTCGGCCGAGTTCAGCTT 60.048 61.111 31.97 0.00 0.00 3.74
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
9 10 1.683385 CACTATGGAGGACGCTGATCA 59.317 52.381 0.00 0.00 0.00 2.92
17 18 2.697751 AGCTGATGTCACTATGGAGGAC 59.302 50.000 0.00 0.00 0.00 3.85
35 36 2.224161 GGAGTTAGATGATCGCCAAGCT 60.224 50.000 0.00 0.00 0.00 3.74
36 37 2.139118 GGAGTTAGATGATCGCCAAGC 58.861 52.381 0.00 0.00 0.00 4.01
51 52 1.980765 TGCAGAGGAGTTCATGGAGTT 59.019 47.619 0.00 0.00 0.00 3.01
68 69 2.496470 TGCTGCAAATGATAACCATGCA 59.504 40.909 0.00 0.00 35.24 3.96
71 72 3.098377 TGGTGCTGCAAATGATAACCAT 58.902 40.909 2.77 0.00 36.99 3.55
360 361 6.856426 GTCACAAAACCACTAAAGAATACAGC 59.144 38.462 0.00 0.00 0.00 4.40
364 365 8.684386 TGATGTCACAAAACCACTAAAGAATA 57.316 30.769 0.00 0.00 0.00 1.75
434 435 4.922206 AGTTCATCTATGTTGAGCCCAAA 58.078 39.130 0.00 0.00 33.49 3.28
444 445 3.260884 ACGGTTGGTGAGTTCATCTATGT 59.739 43.478 0.00 0.00 0.00 2.29
471 472 2.029290 TCCCCGAGATTAAAGCGCTATC 60.029 50.000 12.05 10.85 0.00 2.08
472 473 1.968493 TCCCCGAGATTAAAGCGCTAT 59.032 47.619 12.05 0.00 0.00 2.97
473 474 1.405872 TCCCCGAGATTAAAGCGCTA 58.594 50.000 12.05 0.00 0.00 4.26
474 475 0.539986 TTCCCCGAGATTAAAGCGCT 59.460 50.000 2.64 2.64 0.00 5.92
475 476 0.938008 CTTCCCCGAGATTAAAGCGC 59.062 55.000 0.00 0.00 0.00 5.92
476 477 2.596904 TCTTCCCCGAGATTAAAGCG 57.403 50.000 0.00 0.00 0.00 4.68
477 478 2.614520 GCTTCTTCCCCGAGATTAAAGC 59.385 50.000 0.00 0.00 30.97 3.51
478 479 3.206964 GGCTTCTTCCCCGAGATTAAAG 58.793 50.000 0.00 0.00 0.00 1.85
479 480 2.574369 TGGCTTCTTCCCCGAGATTAAA 59.426 45.455 0.00 0.00 0.00 1.52
480 481 2.193127 TGGCTTCTTCCCCGAGATTAA 58.807 47.619 0.00 0.00 0.00 1.40
481 482 1.874129 TGGCTTCTTCCCCGAGATTA 58.126 50.000 0.00 0.00 0.00 1.75
482 483 1.216990 ATGGCTTCTTCCCCGAGATT 58.783 50.000 0.00 0.00 0.00 2.40
483 484 1.133976 CAATGGCTTCTTCCCCGAGAT 60.134 52.381 0.00 0.00 0.00 2.75
484 485 0.253044 CAATGGCTTCTTCCCCGAGA 59.747 55.000 0.00 0.00 0.00 4.04
485 486 0.749454 CCAATGGCTTCTTCCCCGAG 60.749 60.000 0.00 0.00 0.00 4.63
486 487 1.302949 CCAATGGCTTCTTCCCCGA 59.697 57.895 0.00 0.00 0.00 5.14
487 488 1.754234 CCCAATGGCTTCTTCCCCG 60.754 63.158 0.00 0.00 0.00 5.73
488 489 1.381735 CCCCAATGGCTTCTTCCCC 60.382 63.158 0.00 0.00 0.00 4.81
489 490 0.041090 TTCCCCAATGGCTTCTTCCC 59.959 55.000 0.00 0.00 0.00 3.97
490 491 1.005924 TCTTCCCCAATGGCTTCTTCC 59.994 52.381 0.00 0.00 0.00 3.46
491 492 2.514458 TCTTCCCCAATGGCTTCTTC 57.486 50.000 0.00 0.00 0.00 2.87
492 493 2.812658 CTTCTTCCCCAATGGCTTCTT 58.187 47.619 0.00 0.00 0.00 2.52
493 494 1.618074 GCTTCTTCCCCAATGGCTTCT 60.618 52.381 0.00 0.00 0.00 2.85
494 495 0.820226 GCTTCTTCCCCAATGGCTTC 59.180 55.000 0.00 0.00 0.00 3.86
495 496 0.114954 TGCTTCTTCCCCAATGGCTT 59.885 50.000 0.00 0.00 0.00 4.35
496 497 0.613012 GTGCTTCTTCCCCAATGGCT 60.613 55.000 0.00 0.00 0.00 4.75
497 498 1.893062 GTGCTTCTTCCCCAATGGC 59.107 57.895 0.00 0.00 0.00 4.40
498 499 1.315257 CCGTGCTTCTTCCCCAATGG 61.315 60.000 0.00 0.00 0.00 3.16
499 500 0.322456 TCCGTGCTTCTTCCCCAATG 60.322 55.000 0.00 0.00 0.00 2.82
500 501 0.035056 CTCCGTGCTTCTTCCCCAAT 60.035 55.000 0.00 0.00 0.00 3.16
501 502 1.374947 CTCCGTGCTTCTTCCCCAA 59.625 57.895 0.00 0.00 0.00 4.12
502 503 2.592993 CCTCCGTGCTTCTTCCCCA 61.593 63.158 0.00 0.00 0.00 4.96
503 504 2.269241 CCTCCGTGCTTCTTCCCC 59.731 66.667 0.00 0.00 0.00 4.81
504 505 2.269241 CCCTCCGTGCTTCTTCCC 59.731 66.667 0.00 0.00 0.00 3.97
505 506 1.262640 TACCCCTCCGTGCTTCTTCC 61.263 60.000 0.00 0.00 0.00 3.46
506 507 0.108281 GTACCCCTCCGTGCTTCTTC 60.108 60.000 0.00 0.00 0.00 2.87
507 508 0.834687 TGTACCCCTCCGTGCTTCTT 60.835 55.000 0.00 0.00 0.00 2.52
508 509 0.617820 ATGTACCCCTCCGTGCTTCT 60.618 55.000 0.00 0.00 0.00 2.85
509 510 0.252197 AATGTACCCCTCCGTGCTTC 59.748 55.000 0.00 0.00 0.00 3.86
510 511 1.575419 TAATGTACCCCTCCGTGCTT 58.425 50.000 0.00 0.00 0.00 3.91
552 553 4.292186 ACTACAGCAAATGACATCACCT 57.708 40.909 0.00 0.00 0.00 4.00
558 559 3.004629 CAGGCAAACTACAGCAAATGACA 59.995 43.478 0.00 0.00 0.00 3.58
561 562 2.557924 TCCAGGCAAACTACAGCAAATG 59.442 45.455 0.00 0.00 0.00 2.32
591 592 2.102749 CATTCCCCGTTGCATGCG 59.897 61.111 14.09 0.00 0.00 4.73
599 600 1.078143 GCTTCAGCTCATTCCCCGT 60.078 57.895 0.00 0.00 38.21 5.28
601 602 0.033699 AAGGCTTCAGCTCATTCCCC 60.034 55.000 0.00 0.00 41.70 4.81
609 610 2.824341 CCTGATTCAAAAGGCTTCAGCT 59.176 45.455 0.00 0.00 41.70 4.24
621 622 1.619432 GGAACATGGGCCCTGATTCAA 60.619 52.381 25.70 0.00 0.00 2.69
646 647 4.165372 TGGTGGACAGTAAAGACCTTTCTT 59.835 41.667 0.00 0.00 44.53 2.52
650 651 3.743269 CGTTGGTGGACAGTAAAGACCTT 60.743 47.826 0.00 0.00 0.00 3.50
665 666 1.924191 GCGGTTCATTGAACGTTGGTG 60.924 52.381 20.27 1.33 42.78 4.17
792 793 9.167311 AGATAGTAATGTCAAAATGGAGACAAC 57.833 33.333 0.00 0.00 46.62 3.32
938 942 2.117206 GTGTCAATGTGGGGCCCA 59.883 61.111 24.76 24.76 0.00 5.36
1139 1158 3.110178 GCGGTCTCCACGGTTTCG 61.110 66.667 0.00 0.00 43.02 3.46
1140 1159 3.110178 CGCGGTCTCCACGGTTTC 61.110 66.667 0.00 0.00 0.00 2.78
1141 1160 4.675029 CCGCGGTCTCCACGGTTT 62.675 66.667 19.50 0.00 43.39 3.27
1391 1413 3.894547 TTCCGCTTCGACCTTGGCC 62.895 63.158 0.00 0.00 0.00 5.36
1616 1641 2.224161 GGCTTCAGAATCCGCATCTACT 60.224 50.000 0.00 0.00 0.00 2.57
1925 1950 0.181114 TGCTAGCCTTGGCATAGTGG 59.819 55.000 13.29 0.00 35.71 4.00
1988 2013 1.604604 TCTTCTTTTGCCGTTGGAGG 58.395 50.000 0.00 0.00 0.00 4.30
2265 2290 5.333263 GGTTCAGCACAAAATTACACAATGC 60.333 40.000 0.00 0.00 0.00 3.56
2399 2424 3.081061 ACAGTTCTTGCACTTGACAACA 58.919 40.909 0.00 0.00 0.00 3.33
2544 2569 7.230108 ACAAATCAGGATAGCCAAGTTATCATG 59.770 37.037 0.00 6.74 38.31 3.07
2551 2576 6.067217 AGTTACAAATCAGGATAGCCAAGT 57.933 37.500 0.00 0.00 36.29 3.16
2552 2577 7.275920 AGTAGTTACAAATCAGGATAGCCAAG 58.724 38.462 0.00 0.00 36.29 3.61
2554 2579 6.183360 GGAGTAGTTACAAATCAGGATAGCCA 60.183 42.308 0.00 0.00 36.29 4.75
2556 2581 6.817184 TGGAGTAGTTACAAATCAGGATAGC 58.183 40.000 0.00 0.00 0.00 2.97
2557 2582 8.865090 AGATGGAGTAGTTACAAATCAGGATAG 58.135 37.037 0.00 0.00 0.00 2.08
2560 2585 8.783660 ATAGATGGAGTAGTTACAAATCAGGA 57.216 34.615 0.00 0.00 0.00 3.86
2609 2634 6.166279 CAACCAATATGTGAGTATATCGGCT 58.834 40.000 0.00 0.00 0.00 5.52
2657 2682 4.285863 CAGTCATTCTTCTACTCCCTCCT 58.714 47.826 0.00 0.00 0.00 3.69
2716 2741 1.704628 TCCCAACTCTTCTGCATCCAA 59.295 47.619 0.00 0.00 0.00 3.53
2730 2755 7.410120 AATTTATGTTCCTCTCAATCCCAAC 57.590 36.000 0.00 0.00 0.00 3.77
2782 2807 4.551990 CGGTATTAGCATGCAAAACCTACG 60.552 45.833 21.98 10.54 0.00 3.51
2788 2813 5.378292 TCAAACGGTATTAGCATGCAAAA 57.622 34.783 21.98 14.12 0.00 2.44
2799 2824 8.665643 TCGGTTATCATTTATCAAACGGTATT 57.334 30.769 0.00 0.00 32.15 1.89
2802 2827 5.526111 CCTCGGTTATCATTTATCAAACGGT 59.474 40.000 0.00 0.00 32.15 4.83
2805 2830 9.503427 CTTTTCCTCGGTTATCATTTATCAAAC 57.497 33.333 0.00 0.00 0.00 2.93
2822 2847 3.506810 TGTTTGCAACAACTTTTCCTCG 58.493 40.909 0.00 0.00 38.72 4.63
2833 2858 4.199432 ACTCAACCAAATGTTTGCAACA 57.801 36.364 0.00 0.88 46.94 3.33
2857 2882 5.951747 TCAGGATTTGAGTAAAAATGGGAGG 59.048 40.000 0.00 0.00 29.89 4.30
2908 2933 7.784633 TTTTTATCATGCAGATCGTATCACA 57.215 32.000 0.00 0.00 38.19 3.58
2971 2997 0.323178 ATCAGCTGGAGCCCAAACAG 60.323 55.000 15.13 0.00 43.38 3.16
2982 3008 7.514784 TCCAAATGATACATTAATCAGCTGG 57.485 36.000 15.13 0.00 39.18 4.85
3139 3165 4.541973 AGGGCAAATGAGAAATTCCAAC 57.458 40.909 0.00 0.00 0.00 3.77
3218 3244 3.621715 CGCCCTCTAAAAGTACAATGGAC 59.378 47.826 0.00 0.00 0.00 4.02
3255 3282 6.071616 AGGAACAAACTGCAAAACTCTTTACA 60.072 34.615 0.00 0.00 0.00 2.41
3296 3323 5.820404 ATGATGATGCATCTTGACTCCTA 57.180 39.130 26.32 4.16 41.06 2.94
3401 3428 5.803967 GTGATTTCAGCTCATTGGATTTGTC 59.196 40.000 0.00 0.00 0.00 3.18
3551 3578 8.937884 TGGAAATGCAATTGATCAAACATAAAG 58.062 29.630 13.09 0.00 36.10 1.85
3576 3603 8.708742 CCATAAAATAAATGCTGCATTGATCTG 58.291 33.333 26.87 18.15 34.04 2.90
3682 3735 7.054124 TGGTTGTCAGTCAATCTAGAACTTTT 58.946 34.615 0.00 0.00 37.96 2.27
3753 3806 3.671928 GCACATGAGCAACTGAATCAAAC 59.328 43.478 10.48 0.00 0.00 2.93
3974 4027 9.932207 TGAAGATTCAAAGCATAAACATGAAAT 57.068 25.926 0.00 0.00 34.09 2.17
3975 4028 9.414295 CTGAAGATTCAAAGCATAAACATGAAA 57.586 29.630 0.00 0.00 36.64 2.69
3976 4029 8.030692 CCTGAAGATTCAAAGCATAAACATGAA 58.969 33.333 0.00 0.00 36.64 2.57
3988 4041 5.392811 GCTGGTGATTCCTGAAGATTCAAAG 60.393 44.000 0.00 0.00 36.79 2.77
4073 4126 3.489229 GCTGTTCCTGGTCAAGTTTCAAC 60.489 47.826 0.00 0.00 0.00 3.18
4226 4279 0.888619 CGTCTTCAGCTACCTGGACA 59.111 55.000 0.00 0.00 39.61 4.02
4301 4354 3.139077 GACGGAATTTGTTCAGAGTGGT 58.861 45.455 0.00 0.00 0.00 4.16
4319 4372 6.851222 AATGATAATTGTAAGCTGAGGACG 57.149 37.500 0.00 0.00 0.00 4.79
4390 4443 6.652481 AGAGAACATACAGATGACCAAACAAG 59.348 38.462 0.00 0.00 36.48 3.16
4393 4446 9.469807 CTATAGAGAACATACAGATGACCAAAC 57.530 37.037 0.00 0.00 36.48 2.93
4434 4487 8.432805 CCCATGATATACCTATCCTATGAAACC 58.567 40.741 0.00 0.00 34.03 3.27
4436 4490 9.797732 TTCCCATGATATACCTATCCTATGAAA 57.202 33.333 0.00 0.00 34.03 2.69
4479 4537 6.608405 AGGAATTGAGATACATGCCATTTCAA 59.392 34.615 13.13 13.13 32.86 2.69
4483 4541 8.051535 CCTATAGGAATTGAGATACATGCCATT 58.948 37.037 14.11 0.00 37.39 3.16
4487 4545 7.187824 TCCCTATAGGAATTGAGATACATGC 57.812 40.000 21.07 0.00 43.78 4.06
4546 4604 6.659824 CCTTAGCCTAGACCTAATGGAAAAA 58.340 40.000 0.00 0.00 37.04 1.94
4618 4688 7.734942 ACAAATCAAATGGCTCTAAAGGAAAA 58.265 30.769 0.00 0.00 0.00 2.29
4661 4731 8.881262 GGAGAACAGGGATAATTCCTTTATAGA 58.119 37.037 0.00 0.00 42.20 1.98
4677 4747 0.329261 TTGGAGCATGGAGAACAGGG 59.671 55.000 0.00 0.00 0.00 4.45
4693 4763 8.966868 TCTAGGCTAATGTTTATTTCCTTTTGG 58.033 33.333 0.00 0.00 42.21 3.28
4698 4768 8.090788 TGAGTCTAGGCTAATGTTTATTTCCT 57.909 34.615 0.00 0.00 34.50 3.36
4798 4869 6.784031 AGGAAACTTGTAGGAAATGAGATGT 58.216 36.000 0.00 0.00 37.44 3.06
4873 4948 4.248058 CCAATCCTTCACATTTCAAAGGC 58.752 43.478 0.00 0.00 39.55 4.35
4922 4997 2.353704 GCCCTTTGGTTTGTAGGAATGC 60.354 50.000 0.00 0.00 0.00 3.56
5015 5092 9.699703 ACAACAACAAAAACACAATTTAGTACT 57.300 25.926 0.00 0.00 0.00 2.73
5077 5156 2.906897 AGGTGTGCCGCAAACTGG 60.907 61.111 13.44 0.00 40.50 4.00
5097 5176 1.063567 GTAGAGAGAGGCCAGGAAGGA 60.064 57.143 5.01 0.00 41.22 3.36
5136 5215 5.420739 CCTGCCAGGCCTAAACTTTTTATAA 59.579 40.000 3.98 0.00 0.00 0.98
5138 5217 3.769300 CCTGCCAGGCCTAAACTTTTTAT 59.231 43.478 3.98 0.00 0.00 1.40
5140 5219 1.970640 CCTGCCAGGCCTAAACTTTTT 59.029 47.619 3.98 0.00 0.00 1.94
5218 5298 5.220662 CGCCTAAAGTGGACATGATTGTAAG 60.221 44.000 0.00 0.00 35.79 2.34
5226 5306 1.453155 AAGCGCCTAAAGTGGACATG 58.547 50.000 2.29 0.00 0.00 3.21
5230 5310 1.066430 CACCTAAGCGCCTAAAGTGGA 60.066 52.381 2.29 0.00 0.00 4.02
5302 5382 7.172532 CAGCATTATTTATAAGACGGTAAGGCA 59.827 37.037 0.00 0.00 33.00 4.75
5310 5390 5.470098 ACCTGCCAGCATTATTTATAAGACG 59.530 40.000 0.00 0.00 0.00 4.18
5316 5396 3.891366 GTCCACCTGCCAGCATTATTTAT 59.109 43.478 0.00 0.00 0.00 1.40
5319 5399 1.686115 GGTCCACCTGCCAGCATTATT 60.686 52.381 0.00 0.00 0.00 1.40
5321 5401 1.302949 GGTCCACCTGCCAGCATTA 59.697 57.895 0.00 0.00 0.00 1.90
5327 5409 1.884497 CGTTATTTGGTCCACCTGCCA 60.884 52.381 0.00 0.00 36.82 4.92
5367 5449 4.769688 TCATTGCATACACTACAAGGAGG 58.230 43.478 0.00 0.00 31.27 4.30
5406 5488 4.038763 AGCGACAAGTAATATGGATCGGAA 59.961 41.667 0.00 0.00 0.00 4.30
5409 5491 4.546570 TGAGCGACAAGTAATATGGATCG 58.453 43.478 0.00 0.00 0.00 3.69
5433 5515 4.875544 TTTCAGTGCTAAATACATCCGC 57.124 40.909 0.00 0.00 0.00 5.54
5443 5525 8.217131 TGTATCTAGACGTATTTCAGTGCTAA 57.783 34.615 0.00 0.00 0.00 3.09
5479 5598 3.832490 CCTCCGATCCATATTACCTGTCA 59.168 47.826 0.00 0.00 0.00 3.58
5484 5603 3.442076 ACTCCCTCCGATCCATATTACC 58.558 50.000 0.00 0.00 0.00 2.85
5574 5694 6.358118 TGCTACTTTTTCCAATAGCATACG 57.642 37.500 0.78 0.00 43.83 3.06
5577 5697 6.015519 TGTGTTGCTACTTTTTCCAATAGCAT 60.016 34.615 5.69 0.00 46.91 3.79
5578 5698 5.300539 TGTGTTGCTACTTTTTCCAATAGCA 59.699 36.000 0.78 0.78 46.26 3.49
5579 5699 5.768317 TGTGTTGCTACTTTTTCCAATAGC 58.232 37.500 0.00 0.00 40.40 2.97
5580 5700 7.698130 GCTATGTGTTGCTACTTTTTCCAATAG 59.302 37.037 0.00 0.00 0.00 1.73
5610 5730 6.073003 GGACAATCTATTAGCCATACACAAGC 60.073 42.308 0.00 0.00 0.00 4.01
5627 5747 1.347707 TGAAGGCGAACAGGACAATCT 59.652 47.619 0.00 0.00 0.00 2.40
5640 5760 3.652274 ACATTCCACAAAATTGAAGGCG 58.348 40.909 0.00 0.00 0.00 5.52
5648 5768 8.739972 GGTGTTATCTAGAACATTCCACAAAAT 58.260 33.333 0.00 0.00 41.21 1.82
5649 5769 7.175990 GGGTGTTATCTAGAACATTCCACAAAA 59.824 37.037 0.00 0.00 41.21 2.44
5650 5770 6.657541 GGGTGTTATCTAGAACATTCCACAAA 59.342 38.462 0.00 0.00 41.21 2.83
5651 5771 6.177610 GGGTGTTATCTAGAACATTCCACAA 58.822 40.000 0.00 0.00 41.21 3.33
5652 5772 5.338871 GGGGTGTTATCTAGAACATTCCACA 60.339 44.000 15.64 3.54 41.21 4.17
5653 5773 5.123936 GGGGTGTTATCTAGAACATTCCAC 58.876 45.833 15.64 6.52 41.21 4.02
5654 5774 4.165372 GGGGGTGTTATCTAGAACATTCCA 59.835 45.833 15.64 0.51 41.21 3.53
5655 5775 4.715713 GGGGGTGTTATCTAGAACATTCC 58.284 47.826 0.00 4.25 41.21 3.01
5680 5800 0.034089 GTGAAAGACCATGGAGGGGG 60.034 60.000 21.47 0.00 43.89 5.40
5681 5801 0.392998 CGTGAAAGACCATGGAGGGG 60.393 60.000 21.47 0.00 43.89 4.79
5682 5802 0.324943 ACGTGAAAGACCATGGAGGG 59.675 55.000 21.47 0.90 43.89 4.30
5683 5803 1.806542 CAACGTGAAAGACCATGGAGG 59.193 52.381 21.47 2.60 45.67 4.30
5684 5804 2.766313 TCAACGTGAAAGACCATGGAG 58.234 47.619 21.47 0.00 0.00 3.86
5685 5805 2.920724 TCAACGTGAAAGACCATGGA 57.079 45.000 21.47 0.00 0.00 3.41
5686 5806 2.350772 GCTTCAACGTGAAAGACCATGG 60.351 50.000 11.19 11.19 35.73 3.66
5687 5807 2.290367 TGCTTCAACGTGAAAGACCATG 59.710 45.455 12.91 0.00 35.73 3.66
5688 5808 2.571212 TGCTTCAACGTGAAAGACCAT 58.429 42.857 12.91 0.00 35.73 3.55
5689 5809 2.031258 TGCTTCAACGTGAAAGACCA 57.969 45.000 12.91 1.70 35.73 4.02
5690 5810 2.808543 AGATGCTTCAACGTGAAAGACC 59.191 45.455 12.91 2.93 35.73 3.85
5691 5811 4.474226 AAGATGCTTCAACGTGAAAGAC 57.526 40.909 12.91 6.18 35.73 3.01
5692 5812 6.481976 TCTTTAAGATGCTTCAACGTGAAAGA 59.518 34.615 12.91 0.00 35.73 2.52
5693 5813 6.658831 TCTTTAAGATGCTTCAACGTGAAAG 58.341 36.000 2.07 5.95 35.73 2.62
5694 5814 6.481976 TCTCTTTAAGATGCTTCAACGTGAAA 59.518 34.615 2.07 0.00 35.73 2.69
5695 5815 5.989168 TCTCTTTAAGATGCTTCAACGTGAA 59.011 36.000 2.07 0.00 34.79 3.18
5696 5816 5.538118 TCTCTTTAAGATGCTTCAACGTGA 58.462 37.500 2.07 0.00 0.00 4.35
5697 5817 5.635280 TCTCTCTTTAAGATGCTTCAACGTG 59.365 40.000 2.07 0.00 32.19 4.49
5698 5818 5.784177 TCTCTCTTTAAGATGCTTCAACGT 58.216 37.500 2.07 0.00 32.19 3.99
5699 5819 6.401581 GGTTCTCTCTTTAAGATGCTTCAACG 60.402 42.308 2.07 0.00 32.19 4.10
5700 5820 6.652900 AGGTTCTCTCTTTAAGATGCTTCAAC 59.347 38.462 2.07 0.00 32.19 3.18
5701 5821 6.773638 AGGTTCTCTCTTTAAGATGCTTCAA 58.226 36.000 2.07 0.00 32.19 2.69
5702 5822 6.365970 AGGTTCTCTCTTTAAGATGCTTCA 57.634 37.500 2.07 0.00 32.19 3.02
5703 5823 7.680442 AAAGGTTCTCTCTTTAAGATGCTTC 57.320 36.000 0.00 0.00 33.23 3.86
5704 5824 9.746457 AATAAAGGTTCTCTCTTTAAGATGCTT 57.254 29.630 0.00 0.00 39.29 3.91
5705 5825 9.746457 AAATAAAGGTTCTCTCTTTAAGATGCT 57.254 29.630 0.00 0.00 39.29 3.79
5775 6307 8.698210 ACCATGATCATTGCATACACTAAAAAT 58.302 29.630 5.16 0.00 0.00 1.82
5846 6378 4.446719 GGACTGCAGCAAAAGAAAAATCTG 59.553 41.667 15.27 0.00 0.00 2.90
5850 6382 3.883830 TGGACTGCAGCAAAAGAAAAA 57.116 38.095 15.27 0.00 0.00 1.94
5855 6388 2.226437 ACGTAATGGACTGCAGCAAAAG 59.774 45.455 15.27 3.00 0.00 2.27
5908 6441 3.117888 AGGGGAGCACACCATAACTTATG 60.118 47.826 4.86 2.17 43.15 1.90
5936 6469 9.224267 CTCTTAAAGATCCTTGAATGTGAAAGA 57.776 33.333 0.00 0.00 0.00 2.52
6015 6549 6.000219 AGTGCTCCATACAAAATAGGCATAG 59.000 40.000 0.00 0.00 0.00 2.23
6023 6557 4.037208 GCTGCATAGTGCTCCATACAAAAT 59.963 41.667 3.41 0.00 45.31 1.82
6028 6562 2.540265 AGCTGCATAGTGCTCCATAC 57.460 50.000 1.02 0.00 45.31 2.39
6036 6570 7.649306 AGAAACAAACTAAAAAGCTGCATAGTG 59.351 33.333 1.02 0.00 0.00 2.74
6080 6614 6.470278 TCGGATCAGATGAGAAAATGCATAT 58.530 36.000 0.00 0.00 0.00 1.78
6144 6678 1.871080 ACTTCTCAAGACTTGGTGCG 58.129 50.000 15.13 4.95 0.00 5.34
6145 6679 2.287248 GCAACTTCTCAAGACTTGGTGC 60.287 50.000 15.13 6.08 0.00 5.01
6163 6697 0.411452 TAAAGGGGCATCTTGGGCAA 59.589 50.000 0.00 0.00 34.52 4.52
6178 6712 3.503748 AGCAACTTAGGCACAGCTTAAAG 59.496 43.478 0.00 0.00 30.19 1.85
6214 6748 2.421952 GCTGCCTGACATATTCCCTTCA 60.422 50.000 0.00 0.00 0.00 3.02
6259 6793 0.179073 ACTCTTGCTGCAACAGTCGT 60.179 50.000 16.12 5.61 33.43 4.34
6310 6844 0.038744 AGCCACCCAACTCAATGGAG 59.961 55.000 0.00 0.00 43.54 3.86
6394 6928 1.464734 CACCTAGCTCGTCTCCTGAA 58.535 55.000 0.00 0.00 0.00 3.02
6568 7102 1.987807 ATCCCATCTCGCACCCCAAG 61.988 60.000 0.00 0.00 0.00 3.61
6614 7148 5.296780 CCGATAATCACACTAAACAAGCCAT 59.703 40.000 0.00 0.00 0.00 4.40
6790 7324 8.621286 AGACAGTTTTCTAAATTAACCACAGTG 58.379 33.333 0.00 0.00 0.00 3.66
6842 7376 5.726308 TCCAATAGAATCCCTCACTTTCTGA 59.274 40.000 0.00 0.00 32.28 3.27
6957 7491 7.096558 GGAATCACGAAACACGAATATAGAGAC 60.097 40.741 0.00 0.00 45.77 3.36
6991 7525 1.967762 CGCACAATTCATGTTCGCTT 58.032 45.000 0.00 0.00 41.49 4.68
7054 7598 4.690748 ACCATTCTATATGAACATTCGCGG 59.309 41.667 6.13 0.00 37.52 6.46
7055 7599 5.845985 ACCATTCTATATGAACATTCGCG 57.154 39.130 0.00 0.00 37.52 5.87
7065 7609 5.310409 ACCCCACTCAACCATTCTATATG 57.690 43.478 0.00 0.00 0.00 1.78
7066 7610 5.193728 ACAACCCCACTCAACCATTCTATAT 59.806 40.000 0.00 0.00 0.00 0.86
7068 7612 3.333680 ACAACCCCACTCAACCATTCTAT 59.666 43.478 0.00 0.00 0.00 1.98
7069 7613 2.714250 ACAACCCCACTCAACCATTCTA 59.286 45.455 0.00 0.00 0.00 2.10
7070 7614 1.499007 ACAACCCCACTCAACCATTCT 59.501 47.619 0.00 0.00 0.00 2.40
7071 7615 1.613437 CACAACCCCACTCAACCATTC 59.387 52.381 0.00 0.00 0.00 2.67
7072 7616 1.703411 CACAACCCCACTCAACCATT 58.297 50.000 0.00 0.00 0.00 3.16
7074 7618 1.228793 CCACAACCCCACTCAACCA 59.771 57.895 0.00 0.00 0.00 3.67
7075 7619 0.106419 TTCCACAACCCCACTCAACC 60.106 55.000 0.00 0.00 0.00 3.77
7076 7620 1.770294 TTTCCACAACCCCACTCAAC 58.230 50.000 0.00 0.00 0.00 3.18
7077 7621 2.697751 CAATTTCCACAACCCCACTCAA 59.302 45.455 0.00 0.00 0.00 3.02
7078 7622 2.315176 CAATTTCCACAACCCCACTCA 58.685 47.619 0.00 0.00 0.00 3.41
7106 7650 3.586100 TTTTATTCCAAAAGCCGAGCC 57.414 42.857 0.00 0.00 0.00 4.70
7163 7709 3.807071 CAGTGTAGTGCAATGTGTGTACA 59.193 43.478 0.00 0.00 44.69 2.90
7167 7713 2.320805 GCAGTGTAGTGCAATGTGTG 57.679 50.000 10.32 0.00 44.24 3.82
7185 7731 5.519927 GCACACCTTATTGTTTTGGATATGC 59.480 40.000 0.00 0.00 0.00 3.14
7212 7758 6.661377 GTGGATAGACTCAGATAGCATCCTTA 59.339 42.308 0.00 0.00 33.22 2.69
7217 7763 4.771577 CAGGTGGATAGACTCAGATAGCAT 59.228 45.833 0.00 0.00 0.00 3.79
7317 8926 6.263617 AGAATAGGAAAGTTTTACCAACGCAA 59.736 34.615 0.00 0.00 0.00 4.85
7322 8931 9.416284 AGAAACAGAATAGGAAAGTTTTACCAA 57.584 29.630 0.00 0.00 33.04 3.67
7339 8975 0.756294 TGCGTGGAGGAGAAACAGAA 59.244 50.000 0.00 0.00 0.00 3.02
7380 9017 1.081481 TGTGGGAGAGGTCAGAGGTA 58.919 55.000 0.00 0.00 0.00 3.08
7398 9035 4.337060 TCGAGGTCGCGTGGTGTG 62.337 66.667 5.77 0.00 39.60 3.82
7423 9060 1.835927 GAGGTCCTTCACAGCTGGCT 61.836 60.000 19.93 0.00 0.00 4.75
7500 11087 0.253347 TCTCCTTCCCAATCCCTGCT 60.253 55.000 0.00 0.00 0.00 4.24
7591 11179 1.811558 GCAGTGGAGCTCAAAGTGTGA 60.812 52.381 17.19 0.00 34.17 3.58
7595 11183 1.302033 CGGCAGTGGAGCTCAAAGT 60.302 57.895 17.19 2.91 34.17 2.66
7695 11283 1.051812 GATGGGTCGATGAGGGATGT 58.948 55.000 0.00 0.00 0.00 3.06
7761 11349 3.772853 TTGCACGGCTGGAGCTTGT 62.773 57.895 12.59 0.00 41.70 3.16
7800 11388 5.494724 AGTTGCTGATTGATCTGTATGTGT 58.505 37.500 0.00 0.00 0.00 3.72
7804 11392 5.627182 AGGAGTTGCTGATTGATCTGTAT 57.373 39.130 0.00 0.00 0.00 2.29
7871 11459 2.229792 GTTGGATTGAACTCACCAGCA 58.770 47.619 0.00 0.00 34.61 4.41


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.