Multiple sequence alignment - TraesCS2A01G206800

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS2A01G206800 chr2A 100.000 2510 0 0 1 2510 186408034 186405525 0.000000e+00 4636.0
1 TraesCS2A01G206800 chr2D 91.337 2101 97 19 438 2510 164527595 164529638 0.000000e+00 2793.0
2 TraesCS2A01G206800 chr2D 88.073 109 2 6 2409 2510 99959269 99959165 4.390000e-23 119.0
3 TraesCS2A01G206800 chr2B 91.406 896 33 18 643 1533 232788656 232787800 0.000000e+00 1188.0
4 TraesCS2A01G206800 chr2B 85.955 534 52 13 1993 2510 232787367 232786841 1.310000e-152 549.0
5 TraesCS2A01G206800 chr2B 85.252 278 23 6 2085 2352 103727940 103727671 1.140000e-68 270.0
6 TraesCS2A01G206800 chr2B 84.663 163 15 8 2353 2510 103727606 103727449 1.200000e-33 154.0
7 TraesCS2A01G206800 chr2B 82.759 174 21 3 2181 2352 639287952 639287786 2.010000e-31 147.0
8 TraesCS2A01G206800 chr2B 88.095 84 8 2 348 430 281990124 281990206 5.710000e-17 99.0
9 TraesCS2A01G206800 chr2B 90.000 50 5 0 789 838 58973072 58973121 5.800000e-07 65.8
10 TraesCS2A01G206800 chr7D 92.290 441 20 5 1 430 340230433 340230870 4.590000e-172 614.0
11 TraesCS2A01G206800 chr7D 91.383 441 23 10 1 430 310996012 310995576 7.730000e-165 590.0
12 TraesCS2A01G206800 chr7D 90.323 217 18 3 2138 2352 61173222 61173007 5.290000e-72 281.0
13 TraesCS2A01G206800 chr7D 93.038 158 9 2 2353 2509 61172933 61172777 1.940000e-56 230.0
14 TraesCS2A01G206800 chr7D 83.929 112 15 3 315 425 574921436 574921327 1.230000e-18 104.0
15 TraesCS2A01G206800 chr4D 92.184 435 22 3 1 425 105237680 105237248 2.760000e-169 604.0
16 TraesCS2A01G206800 chr4D 86.667 90 7 1 2353 2437 430899062 430899151 7.390000e-16 95.3
17 TraesCS2A01G206800 chr1D 91.818 440 22 5 1 429 319564888 319565324 3.570000e-168 601.0
18 TraesCS2A01G206800 chr1D 94.286 140 8 0 1895 2034 175819977 175819838 5.440000e-52 215.0
19 TraesCS2A01G206800 chr3D 92.896 366 23 3 1 365 457652342 457651979 1.710000e-146 529.0
20 TraesCS2A01G206800 chr3D 95.000 140 7 0 1895 2034 71517819 71517680 1.170000e-53 220.0
21 TraesCS2A01G206800 chr3D 95.000 140 7 0 1895 2034 426452000 426451861 1.170000e-53 220.0
22 TraesCS2A01G206800 chr3D 94.286 140 8 0 1895 2034 25133076 25132937 5.440000e-52 215.0
23 TraesCS2A01G206800 chr3D 85.714 112 12 4 316 425 355906900 355907009 5.670000e-22 115.0
24 TraesCS2A01G206800 chr3D 83.929 112 14 4 316 425 355907255 355907364 1.230000e-18 104.0
25 TraesCS2A01G206800 chr3D 96.875 32 1 0 842 873 22050023 22049992 1.000000e-03 54.7
26 TraesCS2A01G206800 chrUn 93.195 338 11 3 1 328 480511145 480511480 1.040000e-133 486.0
27 TraesCS2A01G206800 chr5B 87.417 302 27 7 2059 2352 482295681 482295979 1.110000e-88 337.0
28 TraesCS2A01G206800 chr5B 86.667 270 28 3 2085 2352 375191221 375190958 2.440000e-75 292.0
29 TraesCS2A01G206800 chr5B 95.597 159 6 1 2353 2510 65521864 65522022 1.150000e-63 254.0
30 TraesCS2A01G206800 chr5B 89.873 158 14 2 2353 2509 482296053 482296209 4.230000e-48 202.0
31 TraesCS2A01G206800 chr5B 80.412 291 28 6 2065 2352 65521526 65521790 7.080000e-46 195.0
32 TraesCS2A01G206800 chr5A 87.636 275 26 4 2085 2352 546208731 546209004 1.870000e-81 313.0
33 TraesCS2A01G206800 chr5A 92.405 158 10 2 2353 2509 546209078 546209234 9.040000e-55 224.0
34 TraesCS2A01G206800 chr5A 82.836 268 23 5 2087 2352 547539721 547539475 4.200000e-53 219.0
35 TraesCS2A01G206800 chr5A 92.105 38 2 1 2474 2510 547537396 547537359 5.000000e-03 52.8
36 TraesCS2A01G206800 chr6A 90.323 217 21 0 1 217 64068475 64068259 4.090000e-73 285.0
37 TraesCS2A01G206800 chr3B 84.722 288 34 5 2067 2352 819033815 819034094 1.900000e-71 279.0
38 TraesCS2A01G206800 chr3B 94.286 140 8 0 1895 2034 42630959 42630820 5.440000e-52 215.0
39 TraesCS2A01G206800 chr7B 93.548 186 10 1 1 186 421542545 421542362 2.460000e-70 276.0
40 TraesCS2A01G206800 chr7B 94.253 174 9 1 1 174 421792956 421793128 5.320000e-67 265.0
41 TraesCS2A01G206800 chr7B 87.619 105 7 3 789 888 228781940 228782043 1.580000e-22 117.0
42 TraesCS2A01G206800 chr7B 96.875 32 1 0 842 873 35091946 35091915 1.000000e-03 54.7
43 TraesCS2A01G206800 chr3A 95.000 140 7 0 1895 2034 34532590 34532451 1.170000e-53 220.0
44 TraesCS2A01G206800 chr3A 92.357 157 8 4 2355 2510 516644772 516644925 1.170000e-53 220.0
45 TraesCS2A01G206800 chr3A 85.938 64 9 0 802 865 364915915 364915978 4.480000e-08 69.4
46 TraesCS2A01G206800 chr6D 94.286 140 8 0 1895 2034 304099311 304099450 5.440000e-52 215.0
47 TraesCS2A01G206800 chr1A 94.286 140 8 0 1895 2034 218526982 218526843 5.440000e-52 215.0
48 TraesCS2A01G206800 chr7A 85.393 178 20 6 248 423 713999865 714000038 1.980000e-41 180.0
49 TraesCS2A01G206800 chr7A 91.026 78 7 0 796 873 683482076 683482153 3.410000e-19 106.0
50 TraesCS2A01G206800 chr7A 85.556 90 8 1 2353 2437 463665182 463665271 3.440000e-14 89.8
51 TraesCS2A01G206800 chr5D 95.122 41 1 1 655 695 247619117 247619078 2.080000e-06 63.9


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS2A01G206800 chr2A 186405525 186408034 2509 True 4636.0 4636 100.0000 1 2510 1 chr2A.!!$R1 2509
1 TraesCS2A01G206800 chr2D 164527595 164529638 2043 False 2793.0 2793 91.3370 438 2510 1 chr2D.!!$F1 2072
2 TraesCS2A01G206800 chr2B 232786841 232788656 1815 True 868.5 1188 88.6805 643 2510 2 chr2B.!!$R3 1867
3 TraesCS2A01G206800 chr5B 482295681 482296209 528 False 269.5 337 88.6450 2059 2509 2 chr5B.!!$F2 450
4 TraesCS2A01G206800 chr5A 546208731 546209234 503 False 268.5 313 90.0205 2085 2509 2 chr5A.!!$F1 424

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
154 155 0.03582 TGGTCAAAGTACCCATCGCC 60.036 55.0 0.0 0.0 38.9 5.54 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1937 2047 2.299867 TGTACAGTGCAATGCAGAGAGA 59.7 45.455 15.18 0.0 40.08 3.1 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
37 38 8.718102 TCTTAATGATTTACTCTAGTTGTGCC 57.282 34.615 0.00 0.00 0.00 5.01
38 39 7.769044 TCTTAATGATTTACTCTAGTTGTGCCC 59.231 37.037 0.00 0.00 0.00 5.36
39 40 5.700402 ATGATTTACTCTAGTTGTGCCCT 57.300 39.130 0.00 0.00 0.00 5.19
40 41 4.832248 TGATTTACTCTAGTTGTGCCCTG 58.168 43.478 0.00 0.00 0.00 4.45
41 42 4.530553 TGATTTACTCTAGTTGTGCCCTGA 59.469 41.667 0.00 0.00 0.00 3.86
42 43 4.537135 TTTACTCTAGTTGTGCCCTGAG 57.463 45.455 0.00 0.00 0.00 3.35
43 44 0.610687 ACTCTAGTTGTGCCCTGAGC 59.389 55.000 0.00 0.00 44.14 4.26
44 45 0.107945 CTCTAGTTGTGCCCTGAGCC 60.108 60.000 0.00 0.00 42.71 4.70
45 46 0.545309 TCTAGTTGTGCCCTGAGCCT 60.545 55.000 0.00 0.00 42.71 4.58
46 47 0.392193 CTAGTTGTGCCCTGAGCCTG 60.392 60.000 0.00 0.00 42.71 4.85
47 48 1.127567 TAGTTGTGCCCTGAGCCTGT 61.128 55.000 0.00 0.00 42.71 4.00
48 49 2.113774 TTGTGCCCTGAGCCTGTG 59.886 61.111 0.00 0.00 42.71 3.66
49 50 4.648626 TGTGCCCTGAGCCTGTGC 62.649 66.667 0.00 0.00 42.71 4.57
50 51 4.648626 GTGCCCTGAGCCTGTGCA 62.649 66.667 0.00 0.00 42.71 4.57
51 52 3.888460 TGCCCTGAGCCTGTGCAA 61.888 61.111 0.00 0.00 42.71 4.08
52 53 2.362120 GCCCTGAGCCTGTGCAAT 60.362 61.111 0.00 0.00 41.13 3.56
53 54 1.980772 GCCCTGAGCCTGTGCAATT 60.981 57.895 0.00 0.00 41.13 2.32
54 55 1.538687 GCCCTGAGCCTGTGCAATTT 61.539 55.000 0.00 0.00 41.13 1.82
55 56 0.971386 CCCTGAGCCTGTGCAATTTT 59.029 50.000 0.00 0.00 41.13 1.82
56 57 1.067354 CCCTGAGCCTGTGCAATTTTC 60.067 52.381 0.00 0.00 41.13 2.29
57 58 1.891150 CCTGAGCCTGTGCAATTTTCT 59.109 47.619 0.00 0.00 41.13 2.52
58 59 2.094854 CCTGAGCCTGTGCAATTTTCTC 60.095 50.000 0.00 0.00 41.13 2.87
59 60 1.536766 TGAGCCTGTGCAATTTTCTCG 59.463 47.619 0.00 0.00 41.13 4.04
60 61 1.537202 GAGCCTGTGCAATTTTCTCGT 59.463 47.619 0.00 0.00 41.13 4.18
61 62 1.956477 AGCCTGTGCAATTTTCTCGTT 59.044 42.857 0.00 0.00 41.13 3.85
62 63 2.030805 AGCCTGTGCAATTTTCTCGTTC 60.031 45.455 0.00 0.00 41.13 3.95
63 64 2.574322 CCTGTGCAATTTTCTCGTTCG 58.426 47.619 0.00 0.00 0.00 3.95
64 65 2.032030 CCTGTGCAATTTTCTCGTTCGT 60.032 45.455 0.00 0.00 0.00 3.85
65 66 2.966708 CTGTGCAATTTTCTCGTTCGTG 59.033 45.455 0.00 0.00 0.00 4.35
66 67 2.609916 TGTGCAATTTTCTCGTTCGTGA 59.390 40.909 0.00 0.00 0.00 4.35
67 68 2.964768 GTGCAATTTTCTCGTTCGTGAC 59.035 45.455 0.00 0.00 0.00 3.67
68 69 2.869801 TGCAATTTTCTCGTTCGTGACT 59.130 40.909 0.00 0.00 0.00 3.41
69 70 4.052608 TGCAATTTTCTCGTTCGTGACTA 58.947 39.130 0.00 0.00 0.00 2.59
70 71 4.084745 TGCAATTTTCTCGTTCGTGACTAC 60.085 41.667 0.00 0.00 0.00 2.73
79 80 4.459973 CGTGACTACGTGGCTCAG 57.540 61.111 0.00 0.00 44.99 3.35
80 81 1.579932 CGTGACTACGTGGCTCAGT 59.420 57.895 0.00 0.00 44.99 3.41
81 82 0.800631 CGTGACTACGTGGCTCAGTA 59.199 55.000 0.00 0.00 44.99 2.74
82 83 1.198408 CGTGACTACGTGGCTCAGTAA 59.802 52.381 0.00 0.00 44.99 2.24
83 84 2.728225 CGTGACTACGTGGCTCAGTAAG 60.728 54.545 0.00 0.00 44.99 2.34
84 85 1.816835 TGACTACGTGGCTCAGTAAGG 59.183 52.381 0.00 0.00 0.00 2.69
85 86 2.089980 GACTACGTGGCTCAGTAAGGA 58.910 52.381 0.00 0.00 0.00 3.36
86 87 2.490903 GACTACGTGGCTCAGTAAGGAA 59.509 50.000 0.00 0.00 0.00 3.36
87 88 2.895404 ACTACGTGGCTCAGTAAGGAAA 59.105 45.455 0.00 0.00 0.00 3.13
88 89 2.922740 ACGTGGCTCAGTAAGGAAAA 57.077 45.000 0.00 0.00 0.00 2.29
89 90 3.202829 ACGTGGCTCAGTAAGGAAAAA 57.797 42.857 0.00 0.00 0.00 1.94
107 108 3.525800 AAAAAGGGCACTATGTGGAGT 57.474 42.857 0.00 0.00 33.64 3.85
119 120 3.123674 GTGGAGTGCTACACGAAGG 57.876 57.895 0.00 0.00 39.64 3.46
120 121 0.601558 GTGGAGTGCTACACGAAGGA 59.398 55.000 0.00 0.00 39.64 3.36
121 122 1.204941 GTGGAGTGCTACACGAAGGAT 59.795 52.381 0.00 0.00 39.64 3.24
122 123 2.426024 GTGGAGTGCTACACGAAGGATA 59.574 50.000 0.00 0.00 39.64 2.59
123 124 3.068307 GTGGAGTGCTACACGAAGGATAT 59.932 47.826 0.00 0.00 39.64 1.63
124 125 3.704566 TGGAGTGCTACACGAAGGATATT 59.295 43.478 0.00 0.00 39.64 1.28
125 126 4.161565 TGGAGTGCTACACGAAGGATATTT 59.838 41.667 0.00 0.00 39.64 1.40
126 127 5.116882 GGAGTGCTACACGAAGGATATTTT 58.883 41.667 0.00 0.00 39.64 1.82
127 128 5.006746 GGAGTGCTACACGAAGGATATTTTG 59.993 44.000 0.00 0.00 39.64 2.44
128 129 4.332819 AGTGCTACACGAAGGATATTTTGC 59.667 41.667 0.00 0.00 39.64 3.68
129 130 4.332819 GTGCTACACGAAGGATATTTTGCT 59.667 41.667 0.00 0.00 0.00 3.91
130 131 4.941263 TGCTACACGAAGGATATTTTGCTT 59.059 37.500 0.00 0.00 38.93 3.91
131 132 5.414454 TGCTACACGAAGGATATTTTGCTTT 59.586 36.000 0.00 0.00 35.93 3.51
132 133 5.739161 GCTACACGAAGGATATTTTGCTTTG 59.261 40.000 0.00 0.00 41.66 2.77
133 134 5.957842 ACACGAAGGATATTTTGCTTTGA 57.042 34.783 0.00 0.00 39.02 2.69
134 135 5.699839 ACACGAAGGATATTTTGCTTTGAC 58.300 37.500 0.00 0.00 39.02 3.18
135 136 5.473504 ACACGAAGGATATTTTGCTTTGACT 59.526 36.000 0.00 0.00 39.02 3.41
136 137 5.796935 CACGAAGGATATTTTGCTTTGACTG 59.203 40.000 0.00 0.00 39.02 3.51
137 138 5.106157 ACGAAGGATATTTTGCTTTGACTGG 60.106 40.000 0.00 0.00 39.02 4.00
138 139 5.106157 CGAAGGATATTTTGCTTTGACTGGT 60.106 40.000 0.00 0.00 39.02 4.00
139 140 5.904362 AGGATATTTTGCTTTGACTGGTC 57.096 39.130 0.00 0.00 0.00 4.02
140 141 5.324409 AGGATATTTTGCTTTGACTGGTCA 58.676 37.500 0.00 0.00 37.91 4.02
141 142 5.774690 AGGATATTTTGCTTTGACTGGTCAA 59.225 36.000 11.53 11.53 46.72 3.18
151 152 3.695830 TGACTGGTCAAAGTACCCATC 57.304 47.619 0.51 0.00 38.90 3.51
152 153 2.028476 TGACTGGTCAAAGTACCCATCG 60.028 50.000 0.51 0.00 38.90 3.84
153 154 1.338769 ACTGGTCAAAGTACCCATCGC 60.339 52.381 0.00 0.00 38.90 4.58
154 155 0.035820 TGGTCAAAGTACCCATCGCC 60.036 55.000 0.00 0.00 38.90 5.54
155 156 0.035820 GGTCAAAGTACCCATCGCCA 60.036 55.000 0.00 0.00 33.02 5.69
156 157 1.612199 GGTCAAAGTACCCATCGCCAA 60.612 52.381 0.00 0.00 33.02 4.52
157 158 1.737793 GTCAAAGTACCCATCGCCAAG 59.262 52.381 0.00 0.00 0.00 3.61
158 159 0.451783 CAAAGTACCCATCGCCAAGC 59.548 55.000 0.00 0.00 0.00 4.01
176 177 3.338603 CGAAGCAAACCGTACAACG 57.661 52.632 0.00 0.00 42.11 4.10
177 178 0.720173 CGAAGCAAACCGTACAACGC 60.720 55.000 0.00 0.00 40.91 4.84
178 179 0.385098 GAAGCAAACCGTACAACGCC 60.385 55.000 0.00 0.00 40.91 5.68
179 180 2.108344 AAGCAAACCGTACAACGCCG 62.108 55.000 0.00 0.00 40.91 6.46
185 186 2.508439 CGTACAACGCCGGAGCAT 60.508 61.111 5.05 0.00 39.83 3.79
186 187 2.098233 CGTACAACGCCGGAGCATT 61.098 57.895 5.05 0.00 39.83 3.56
188 189 2.395360 TACAACGCCGGAGCATTGC 61.395 57.895 5.05 0.00 45.91 3.56
199 200 4.824166 GCATTGCGCGACTGCCAG 62.824 66.667 12.10 0.00 38.08 4.85
200 201 4.824166 CATTGCGCGACTGCCAGC 62.824 66.667 12.10 0.00 38.08 4.85
207 208 4.056125 CGACTGCCAGCGTCCTCA 62.056 66.667 0.00 0.00 0.00 3.86
208 209 2.433318 GACTGCCAGCGTCCTCAC 60.433 66.667 0.00 0.00 0.00 3.51
209 210 3.941657 GACTGCCAGCGTCCTCACC 62.942 68.421 0.00 0.00 0.00 4.02
218 219 4.796231 GTCCTCACCGCGCACGAT 62.796 66.667 8.75 0.00 43.93 3.73
219 220 3.135457 TCCTCACCGCGCACGATA 61.135 61.111 8.75 0.00 43.93 2.92
220 221 2.655364 CCTCACCGCGCACGATAG 60.655 66.667 8.75 0.00 43.93 2.08
249 250 3.890527 CCAGCTCATGGGCTTAGTT 57.109 52.632 20.07 0.00 46.36 2.24
250 251 1.673168 CCAGCTCATGGGCTTAGTTC 58.327 55.000 20.07 0.00 46.36 3.01
251 252 1.293924 CAGCTCATGGGCTTAGTTCG 58.706 55.000 20.07 0.72 41.00 3.95
252 253 0.462759 AGCTCATGGGCTTAGTTCGC 60.463 55.000 16.33 0.00 39.86 4.70
253 254 0.462759 GCTCATGGGCTTAGTTCGCT 60.463 55.000 11.30 0.00 0.00 4.93
254 255 1.202533 GCTCATGGGCTTAGTTCGCTA 60.203 52.381 11.30 0.00 0.00 4.26
255 256 2.748605 CTCATGGGCTTAGTTCGCTAG 58.251 52.381 0.00 0.00 0.00 3.42
256 257 1.412710 TCATGGGCTTAGTTCGCTAGG 59.587 52.381 0.00 0.00 0.00 3.02
262 263 3.388345 GCTTAGTTCGCTAGGCCTATT 57.612 47.619 14.30 0.00 44.17 1.73
263 264 3.318886 GCTTAGTTCGCTAGGCCTATTC 58.681 50.000 14.30 7.51 44.17 1.75
264 265 3.006003 GCTTAGTTCGCTAGGCCTATTCT 59.994 47.826 14.30 9.73 44.17 2.40
265 266 4.551388 CTTAGTTCGCTAGGCCTATTCTG 58.449 47.826 14.30 2.23 0.00 3.02
266 267 1.689273 AGTTCGCTAGGCCTATTCTGG 59.311 52.381 14.30 1.80 0.00 3.86
267 268 1.048601 TTCGCTAGGCCTATTCTGGG 58.951 55.000 14.30 10.12 0.00 4.45
268 269 0.105658 TCGCTAGGCCTATTCTGGGT 60.106 55.000 14.30 0.00 0.00 4.51
269 270 1.146359 TCGCTAGGCCTATTCTGGGTA 59.854 52.381 14.30 0.00 0.00 3.69
270 271 2.180276 CGCTAGGCCTATTCTGGGTAT 58.820 52.381 14.30 0.00 0.00 2.73
271 272 3.010920 TCGCTAGGCCTATTCTGGGTATA 59.989 47.826 14.30 0.00 0.00 1.47
272 273 3.381908 CGCTAGGCCTATTCTGGGTATAG 59.618 52.174 14.30 0.00 0.00 1.31
273 274 4.611367 GCTAGGCCTATTCTGGGTATAGA 58.389 47.826 14.30 0.00 0.00 1.98
274 275 5.024118 GCTAGGCCTATTCTGGGTATAGAA 58.976 45.833 14.30 0.00 40.65 2.10
275 276 5.128008 GCTAGGCCTATTCTGGGTATAGAAG 59.872 48.000 14.30 0.00 39.81 2.85
276 277 4.430441 AGGCCTATTCTGGGTATAGAAGG 58.570 47.826 1.29 0.00 39.81 3.46
277 278 4.109765 AGGCCTATTCTGGGTATAGAAGGA 59.890 45.833 1.29 0.00 39.81 3.36
278 279 4.844655 GGCCTATTCTGGGTATAGAAGGAA 59.155 45.833 0.00 0.00 39.81 3.36
279 280 5.309806 GGCCTATTCTGGGTATAGAAGGAAA 59.690 44.000 0.00 0.00 39.81 3.13
280 281 6.231951 GCCTATTCTGGGTATAGAAGGAAAC 58.768 44.000 0.00 0.00 39.81 2.78
282 283 7.445945 CCTATTCTGGGTATAGAAGGAAACTG 58.554 42.308 0.00 0.00 42.68 3.16
283 284 7.290248 CCTATTCTGGGTATAGAAGGAAACTGA 59.710 40.741 0.00 0.00 42.68 3.41
284 285 6.945636 TTCTGGGTATAGAAGGAAACTGAA 57.054 37.500 0.00 0.00 42.68 3.02
285 286 6.945636 TCTGGGTATAGAAGGAAACTGAAA 57.054 37.500 0.00 0.00 42.68 2.69
286 287 6.708285 TCTGGGTATAGAAGGAAACTGAAAC 58.292 40.000 0.00 0.00 42.68 2.78
287 288 6.500751 TCTGGGTATAGAAGGAAACTGAAACT 59.499 38.462 0.00 0.00 42.68 2.66
288 289 6.472887 TGGGTATAGAAGGAAACTGAAACTG 58.527 40.000 0.00 0.00 42.68 3.16
289 290 6.043938 TGGGTATAGAAGGAAACTGAAACTGT 59.956 38.462 0.00 0.00 42.68 3.55
290 291 6.371825 GGGTATAGAAGGAAACTGAAACTGTG 59.628 42.308 0.00 0.00 42.68 3.66
291 292 7.159372 GGTATAGAAGGAAACTGAAACTGTGA 58.841 38.462 0.00 0.00 42.68 3.58
292 293 7.117956 GGTATAGAAGGAAACTGAAACTGTGAC 59.882 40.741 0.00 0.00 42.68 3.67
293 294 4.843728 AGAAGGAAACTGAAACTGTGACA 58.156 39.130 0.00 0.00 42.68 3.58
294 295 5.253330 AGAAGGAAACTGAAACTGTGACAA 58.747 37.500 0.00 0.00 42.68 3.18
295 296 4.965119 AGGAAACTGAAACTGTGACAAC 57.035 40.909 0.00 0.00 41.13 3.32
296 297 3.374058 AGGAAACTGAAACTGTGACAACG 59.626 43.478 0.00 0.00 41.13 4.10
297 298 3.372822 GGAAACTGAAACTGTGACAACGA 59.627 43.478 0.00 0.00 0.00 3.85
298 299 4.142773 GGAAACTGAAACTGTGACAACGAA 60.143 41.667 0.00 0.00 0.00 3.85
299 300 5.365403 AAACTGAAACTGTGACAACGAAA 57.635 34.783 0.00 0.00 0.00 3.46
300 301 4.336532 ACTGAAACTGTGACAACGAAAC 57.663 40.909 0.00 0.00 0.00 2.78
301 302 4.000988 ACTGAAACTGTGACAACGAAACT 58.999 39.130 0.00 0.00 0.00 2.66
302 303 4.142902 ACTGAAACTGTGACAACGAAACTG 60.143 41.667 0.00 0.00 0.00 3.16
303 304 3.126171 TGAAACTGTGACAACGAAACTGG 59.874 43.478 0.00 0.00 0.00 4.00
304 305 2.684001 ACTGTGACAACGAAACTGGA 57.316 45.000 0.00 0.00 0.00 3.86
305 306 2.277084 ACTGTGACAACGAAACTGGAC 58.723 47.619 0.00 0.00 0.00 4.02
306 307 2.276201 CTGTGACAACGAAACTGGACA 58.724 47.619 0.00 0.00 0.00 4.02
307 308 2.276201 TGTGACAACGAAACTGGACAG 58.724 47.619 0.00 0.00 0.00 3.51
308 309 2.093921 TGTGACAACGAAACTGGACAGA 60.094 45.455 6.29 0.00 0.00 3.41
309 310 2.284417 GTGACAACGAAACTGGACAGAC 59.716 50.000 6.29 0.00 0.00 3.51
310 311 1.521423 GACAACGAAACTGGACAGACG 59.479 52.381 6.29 10.60 0.00 4.18
311 312 1.135527 ACAACGAAACTGGACAGACGA 59.864 47.619 18.14 0.00 0.00 4.20
312 313 2.198406 CAACGAAACTGGACAGACGAA 58.802 47.619 18.14 0.00 0.00 3.85
313 314 2.589798 ACGAAACTGGACAGACGAAA 57.410 45.000 18.14 0.00 0.00 3.46
314 315 3.107642 ACGAAACTGGACAGACGAAAT 57.892 42.857 18.14 2.08 0.00 2.17
315 316 3.463944 ACGAAACTGGACAGACGAAATT 58.536 40.909 18.14 0.00 0.00 1.82
316 317 3.875134 ACGAAACTGGACAGACGAAATTT 59.125 39.130 18.14 0.00 0.00 1.82
317 318 5.051816 ACGAAACTGGACAGACGAAATTTA 58.948 37.500 18.14 0.00 0.00 1.40
318 319 5.524646 ACGAAACTGGACAGACGAAATTTAA 59.475 36.000 18.14 0.00 0.00 1.52
319 320 6.204108 ACGAAACTGGACAGACGAAATTTAAT 59.796 34.615 18.14 0.00 0.00 1.40
320 321 7.385752 ACGAAACTGGACAGACGAAATTTAATA 59.614 33.333 18.14 0.00 0.00 0.98
321 322 8.388103 CGAAACTGGACAGACGAAATTTAATAT 58.612 33.333 6.29 0.00 0.00 1.28
322 323 9.704098 GAAACTGGACAGACGAAATTTAATATC 57.296 33.333 6.29 0.00 0.00 1.63
323 324 8.786826 AACTGGACAGACGAAATTTAATATCA 57.213 30.769 6.29 0.00 0.00 2.15
324 325 8.964476 ACTGGACAGACGAAATTTAATATCAT 57.036 30.769 6.29 0.00 0.00 2.45
325 326 9.046296 ACTGGACAGACGAAATTTAATATCATC 57.954 33.333 6.29 0.00 0.00 2.92
326 327 9.265901 CTGGACAGACGAAATTTAATATCATCT 57.734 33.333 0.00 0.00 0.00 2.90
327 328 9.261180 TGGACAGACGAAATTTAATATCATCTC 57.739 33.333 0.00 0.00 0.00 2.75
328 329 9.261180 GGACAGACGAAATTTAATATCATCTCA 57.739 33.333 0.00 0.00 0.00 3.27
330 331 8.755941 ACAGACGAAATTTAATATCATCTCACG 58.244 33.333 0.00 0.00 0.00 4.35
331 332 8.755941 CAGACGAAATTTAATATCATCTCACGT 58.244 33.333 0.00 0.00 0.00 4.49
332 333 9.961265 AGACGAAATTTAATATCATCTCACGTA 57.039 29.630 0.00 0.00 0.00 3.57
378 379 8.655378 AAGACGTAAATTTATGAAAAGAAGCG 57.345 30.769 21.54 9.51 0.00 4.68
379 380 7.803724 AGACGTAAATTTATGAAAAGAAGCGT 58.196 30.769 21.54 12.28 31.47 5.07
380 381 8.928733 AGACGTAAATTTATGAAAAGAAGCGTA 58.071 29.630 21.54 0.00 30.09 4.42
381 382 9.698617 GACGTAAATTTATGAAAAGAAGCGTAT 57.301 29.630 21.54 0.00 30.09 3.06
411 412 4.793216 GGTGAATCCGACAAAATCAATTCG 59.207 41.667 0.00 0.00 34.22 3.34
412 413 5.390613 GTGAATCCGACAAAATCAATTCGT 58.609 37.500 0.00 0.00 34.22 3.85
413 414 5.283717 GTGAATCCGACAAAATCAATTCGTG 59.716 40.000 0.00 0.00 34.22 4.35
414 415 3.196007 TCCGACAAAATCAATTCGTGC 57.804 42.857 0.00 0.00 0.00 5.34
415 416 2.811431 TCCGACAAAATCAATTCGTGCT 59.189 40.909 0.00 0.00 0.00 4.40
416 417 3.252215 TCCGACAAAATCAATTCGTGCTT 59.748 39.130 0.00 0.00 0.00 3.91
417 418 3.980775 CCGACAAAATCAATTCGTGCTTT 59.019 39.130 0.00 0.00 0.00 3.51
418 419 5.049336 TCCGACAAAATCAATTCGTGCTTTA 60.049 36.000 0.00 0.00 0.00 1.85
419 420 5.799936 CCGACAAAATCAATTCGTGCTTTAT 59.200 36.000 0.00 0.00 0.00 1.40
420 421 6.307800 CCGACAAAATCAATTCGTGCTTTATT 59.692 34.615 0.00 0.00 0.00 1.40
421 422 7.483375 CCGACAAAATCAATTCGTGCTTTATTA 59.517 33.333 0.00 0.00 0.00 0.98
422 423 9.009327 CGACAAAATCAATTCGTGCTTTATTAT 57.991 29.630 0.00 0.00 0.00 1.28
427 428 9.965824 AAATCAATTCGTGCTTTATTATTAGGG 57.034 29.630 0.00 0.00 0.00 3.53
428 429 8.918202 ATCAATTCGTGCTTTATTATTAGGGA 57.082 30.769 0.00 0.00 0.00 4.20
429 430 8.740123 TCAATTCGTGCTTTATTATTAGGGAA 57.260 30.769 0.00 0.00 0.00 3.97
430 431 8.836413 TCAATTCGTGCTTTATTATTAGGGAAG 58.164 33.333 0.00 0.00 0.00 3.46
431 432 7.745620 ATTCGTGCTTTATTATTAGGGAAGG 57.254 36.000 0.00 0.00 0.00 3.46
432 433 5.617252 TCGTGCTTTATTATTAGGGAAGGG 58.383 41.667 0.00 0.00 0.00 3.95
433 434 5.367352 TCGTGCTTTATTATTAGGGAAGGGA 59.633 40.000 0.00 0.00 0.00 4.20
434 435 6.059484 CGTGCTTTATTATTAGGGAAGGGAA 58.941 40.000 0.00 0.00 0.00 3.97
435 436 6.544564 CGTGCTTTATTATTAGGGAAGGGAAA 59.455 38.462 0.00 0.00 0.00 3.13
436 437 7.255139 CGTGCTTTATTATTAGGGAAGGGAAAG 60.255 40.741 0.00 0.00 0.00 2.62
482 483 7.928307 ACTACTGAAGTTCTACGTAATACCA 57.072 36.000 4.17 0.00 33.35 3.25
490 491 5.009410 AGTTCTACGTAATACCATCCCTTCG 59.991 44.000 0.00 0.00 0.00 3.79
493 494 1.607251 CGTAATACCATCCCTTCGCCC 60.607 57.143 0.00 0.00 0.00 6.13
511 512 1.482177 CCCCAAAGGTGACCAAATGGA 60.482 52.381 18.29 0.00 38.94 3.41
608 609 0.308993 GCCCAAATATCTGCACGAGC 59.691 55.000 0.00 0.00 42.57 5.03
611 612 0.933097 CAAATATCTGCACGAGCGCT 59.067 50.000 11.27 11.27 46.23 5.92
748 749 2.303175 GCCTGTTTCCTTGTTGTACCA 58.697 47.619 0.00 0.00 0.00 3.25
899 908 2.509548 CCCTATCCTTTCCATCCACACA 59.490 50.000 0.00 0.00 0.00 3.72
943 955 1.603236 CCTCTGCGTCTTCCTCTGCT 61.603 60.000 0.00 0.00 0.00 4.24
949 961 1.181786 CGTCTTCCTCTGCTTCCTCT 58.818 55.000 0.00 0.00 0.00 3.69
953 965 3.096092 TCTTCCTCTGCTTCCTCTTCTC 58.904 50.000 0.00 0.00 0.00 2.87
990 1005 1.143183 TAGAATCTTCCACCGGCGC 59.857 57.895 0.00 0.00 0.00 6.53
1140 1155 2.997897 GTCTGTGCGTCCCCTCCT 60.998 66.667 0.00 0.00 0.00 3.69
1542 1562 3.619038 GTCTTCTTATTTCCCGCTCACTG 59.381 47.826 0.00 0.00 0.00 3.66
1547 1567 1.742761 ATTTCCCGCTCACTGTGATG 58.257 50.000 11.45 7.05 0.00 3.07
1571 1610 8.542497 TGACAATTGTGTTGTAGAGGTATAAC 57.458 34.615 17.58 0.00 38.41 1.89
1615 1662 6.038997 AGATAGCGGGTTGGATTAAGTATC 57.961 41.667 0.00 0.00 0.00 2.24
1655 1702 6.587206 TTTGCATGTTGATTCTTGGTGATA 57.413 33.333 0.00 0.00 0.00 2.15
1663 1710 7.056006 TGTTGATTCTTGGTGATATGTGCTAT 58.944 34.615 0.00 0.00 0.00 2.97
1774 1821 2.672714 TCGGAATGTGTTGAAGAGTCG 58.327 47.619 0.00 0.00 0.00 4.18
1806 1908 3.055530 AGTCCTGTCACTCACCATTCATC 60.056 47.826 0.00 0.00 0.00 2.92
1822 1924 8.918658 CACCATTCATCACTTTGATTTGTAAAG 58.081 33.333 0.00 0.00 34.28 1.85
1838 1940 9.869844 GATTTGTAAAGCATCATAGTATGTGTC 57.130 33.333 9.94 5.11 0.00 3.67
1844 1946 8.526218 AAAGCATCATAGTATGTGTCGATTAG 57.474 34.615 9.94 0.00 0.00 1.73
1937 2047 3.066190 TCCTGGATTCGACGCGGT 61.066 61.111 12.47 0.00 0.00 5.68
1975 2085 1.384191 CAGGGGTAAGGCTTGCCTT 59.616 57.895 29.53 27.07 35.54 4.35
2103 2213 3.536498 CTTGCCGCGCCGTTTTCTT 62.536 57.895 0.00 0.00 0.00 2.52
2208 2332 4.501915 CCAAATTCCAAATGACAGTGCAGT 60.502 41.667 0.00 0.00 0.00 4.40
2246 2371 9.144298 TCCGATCTGTTTATCTAAAGTATCCTT 57.856 33.333 0.00 0.00 0.00 3.36
2289 2414 2.042162 ACCATCCTGATCTGTTGCCTTT 59.958 45.455 0.00 0.00 0.00 3.11
2294 2419 2.589014 CTGATCTGTTGCCTTTTTCGC 58.411 47.619 0.00 0.00 0.00 4.70
2394 2592 2.009774 CTCTAGTTTGCCATGAACCCG 58.990 52.381 0.00 0.00 0.00 5.28
2462 2679 8.950208 AGGAAATGCAGAGTTTAGAGTAATAC 57.050 34.615 0.00 0.00 0.00 1.89
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
11 12 9.162764 GGCACAACTAGAGTAAATCATTAAGAA 57.837 33.333 0.00 0.00 0.00 2.52
12 13 7.769044 GGGCACAACTAGAGTAAATCATTAAGA 59.231 37.037 0.00 0.00 0.00 2.10
13 14 7.770897 AGGGCACAACTAGAGTAAATCATTAAG 59.229 37.037 0.00 0.00 0.00 1.85
14 15 7.552687 CAGGGCACAACTAGAGTAAATCATTAA 59.447 37.037 0.00 0.00 0.00 1.40
15 16 7.047891 CAGGGCACAACTAGAGTAAATCATTA 58.952 38.462 0.00 0.00 0.00 1.90
16 17 5.882557 CAGGGCACAACTAGAGTAAATCATT 59.117 40.000 0.00 0.00 0.00 2.57
17 18 5.189736 TCAGGGCACAACTAGAGTAAATCAT 59.810 40.000 0.00 0.00 0.00 2.45
18 19 4.530553 TCAGGGCACAACTAGAGTAAATCA 59.469 41.667 0.00 0.00 0.00 2.57
19 20 5.086104 TCAGGGCACAACTAGAGTAAATC 57.914 43.478 0.00 0.00 0.00 2.17
20 21 4.624125 GCTCAGGGCACAACTAGAGTAAAT 60.624 45.833 0.00 0.00 41.35 1.40
21 22 3.306780 GCTCAGGGCACAACTAGAGTAAA 60.307 47.826 0.00 0.00 41.35 2.01
22 23 2.233922 GCTCAGGGCACAACTAGAGTAA 59.766 50.000 0.00 0.00 41.35 2.24
23 24 1.825474 GCTCAGGGCACAACTAGAGTA 59.175 52.381 0.00 0.00 41.35 2.59
24 25 0.610687 GCTCAGGGCACAACTAGAGT 59.389 55.000 0.00 0.00 41.35 3.24
25 26 0.107945 GGCTCAGGGCACAACTAGAG 60.108 60.000 0.00 0.00 44.01 2.43
26 27 0.545309 AGGCTCAGGGCACAACTAGA 60.545 55.000 0.00 0.00 44.01 2.43
27 28 0.392193 CAGGCTCAGGGCACAACTAG 60.392 60.000 0.00 0.00 44.01 2.57
28 29 1.127567 ACAGGCTCAGGGCACAACTA 61.128 55.000 0.00 0.00 44.01 2.24
29 30 2.433446 CAGGCTCAGGGCACAACT 59.567 61.111 0.00 0.00 44.01 3.16
30 31 2.113986 ACAGGCTCAGGGCACAAC 59.886 61.111 0.00 0.00 44.01 3.32
31 32 2.113774 CACAGGCTCAGGGCACAA 59.886 61.111 0.00 0.00 44.01 3.33
32 33 4.648626 GCACAGGCTCAGGGCACA 62.649 66.667 0.00 0.00 44.01 4.57
33 34 4.648626 TGCACAGGCTCAGGGCAC 62.649 66.667 0.00 0.00 44.01 5.01
34 35 2.718487 AATTGCACAGGCTCAGGGCA 62.718 55.000 0.00 0.00 44.01 5.36
35 36 1.538687 AAATTGCACAGGCTCAGGGC 61.539 55.000 0.00 0.00 41.91 5.19
36 37 0.971386 AAAATTGCACAGGCTCAGGG 59.029 50.000 0.00 0.00 41.91 4.45
37 38 1.891150 AGAAAATTGCACAGGCTCAGG 59.109 47.619 0.00 0.00 41.91 3.86
38 39 2.413765 CGAGAAAATTGCACAGGCTCAG 60.414 50.000 0.00 0.00 41.91 3.35
39 40 1.536766 CGAGAAAATTGCACAGGCTCA 59.463 47.619 0.00 0.00 41.91 4.26
40 41 1.537202 ACGAGAAAATTGCACAGGCTC 59.463 47.619 0.00 0.00 41.91 4.70
41 42 1.609208 ACGAGAAAATTGCACAGGCT 58.391 45.000 0.00 0.00 41.91 4.58
42 43 2.319472 GAACGAGAAAATTGCACAGGC 58.681 47.619 0.00 0.00 41.68 4.85
43 44 2.032030 ACGAACGAGAAAATTGCACAGG 60.032 45.455 0.14 0.00 0.00 4.00
44 45 2.966708 CACGAACGAGAAAATTGCACAG 59.033 45.455 0.14 0.00 0.00 3.66
45 46 2.609916 TCACGAACGAGAAAATTGCACA 59.390 40.909 0.14 0.00 0.00 4.57
46 47 2.964768 GTCACGAACGAGAAAATTGCAC 59.035 45.455 0.14 0.00 0.00 4.57
47 48 2.869801 AGTCACGAACGAGAAAATTGCA 59.130 40.909 0.14 0.00 0.00 4.08
48 49 3.521524 AGTCACGAACGAGAAAATTGC 57.478 42.857 0.14 0.00 0.00 3.56
63 64 2.415625 CCTTACTGAGCCACGTAGTCAC 60.416 54.545 0.00 0.00 41.61 3.67
64 65 1.816835 CCTTACTGAGCCACGTAGTCA 59.183 52.381 0.00 0.00 41.61 3.41
65 66 2.089980 TCCTTACTGAGCCACGTAGTC 58.910 52.381 0.00 0.00 41.61 2.59
67 68 3.587797 TTTCCTTACTGAGCCACGTAG 57.412 47.619 0.00 0.00 0.00 3.51
68 69 4.339872 TTTTTCCTTACTGAGCCACGTA 57.660 40.909 0.00 0.00 0.00 3.57
69 70 2.922740 TTTTCCTTACTGAGCCACGT 57.077 45.000 0.00 0.00 0.00 4.49
87 88 3.157087 CACTCCACATAGTGCCCTTTTT 58.843 45.455 0.00 0.00 40.40 1.94
88 89 2.795329 CACTCCACATAGTGCCCTTTT 58.205 47.619 0.00 0.00 40.40 2.27
89 90 2.496899 CACTCCACATAGTGCCCTTT 57.503 50.000 0.00 0.00 40.40 3.11
96 97 2.443416 TCGTGTAGCACTCCACATAGT 58.557 47.619 0.00 0.00 31.34 2.12
97 98 3.439293 CTTCGTGTAGCACTCCACATAG 58.561 50.000 0.00 0.00 31.34 2.23
98 99 2.165641 CCTTCGTGTAGCACTCCACATA 59.834 50.000 0.00 0.00 31.34 2.29
99 100 1.066858 CCTTCGTGTAGCACTCCACAT 60.067 52.381 0.00 0.00 31.34 3.21
100 101 0.317160 CCTTCGTGTAGCACTCCACA 59.683 55.000 0.00 0.00 31.34 4.17
101 102 0.601558 TCCTTCGTGTAGCACTCCAC 59.398 55.000 0.00 0.00 31.34 4.02
102 103 1.557099 ATCCTTCGTGTAGCACTCCA 58.443 50.000 0.00 0.00 31.34 3.86
103 104 4.323553 AATATCCTTCGTGTAGCACTCC 57.676 45.455 0.00 0.00 31.34 3.85
104 105 5.502544 GCAAAATATCCTTCGTGTAGCACTC 60.503 44.000 0.00 0.00 31.34 3.51
105 106 4.332819 GCAAAATATCCTTCGTGTAGCACT 59.667 41.667 0.00 0.00 31.34 4.40
106 107 4.332819 AGCAAAATATCCTTCGTGTAGCAC 59.667 41.667 0.00 0.00 0.00 4.40
107 108 4.513442 AGCAAAATATCCTTCGTGTAGCA 58.487 39.130 0.00 0.00 0.00 3.49
108 109 5.485662 AAGCAAAATATCCTTCGTGTAGC 57.514 39.130 0.00 0.00 0.00 3.58
109 110 6.961554 GTCAAAGCAAAATATCCTTCGTGTAG 59.038 38.462 0.00 0.00 0.00 2.74
110 111 6.653320 AGTCAAAGCAAAATATCCTTCGTGTA 59.347 34.615 0.00 0.00 0.00 2.90
111 112 5.473504 AGTCAAAGCAAAATATCCTTCGTGT 59.526 36.000 0.00 0.00 0.00 4.49
112 113 5.796935 CAGTCAAAGCAAAATATCCTTCGTG 59.203 40.000 0.00 0.00 0.00 4.35
113 114 5.106157 CCAGTCAAAGCAAAATATCCTTCGT 60.106 40.000 0.00 0.00 0.00 3.85
114 115 5.106157 ACCAGTCAAAGCAAAATATCCTTCG 60.106 40.000 0.00 0.00 0.00 3.79
115 116 6.071952 TGACCAGTCAAAGCAAAATATCCTTC 60.072 38.462 0.00 0.00 36.53 3.46
116 117 5.774690 TGACCAGTCAAAGCAAAATATCCTT 59.225 36.000 0.00 0.00 36.53 3.36
117 118 5.324409 TGACCAGTCAAAGCAAAATATCCT 58.676 37.500 0.00 0.00 36.53 3.24
118 119 5.643379 TGACCAGTCAAAGCAAAATATCC 57.357 39.130 0.00 0.00 36.53 2.59
130 131 3.556213 CGATGGGTACTTTGACCAGTCAA 60.556 47.826 9.12 9.12 46.72 3.18
131 132 2.028476 CGATGGGTACTTTGACCAGTCA 60.028 50.000 0.00 0.00 41.73 3.41
132 133 2.618053 CGATGGGTACTTTGACCAGTC 58.382 52.381 0.00 0.00 41.73 3.51
133 134 1.338769 GCGATGGGTACTTTGACCAGT 60.339 52.381 0.00 0.00 41.73 4.00
134 135 1.369625 GCGATGGGTACTTTGACCAG 58.630 55.000 0.00 0.00 41.73 4.00
135 136 0.035820 GGCGATGGGTACTTTGACCA 60.036 55.000 0.00 0.00 41.73 4.02
136 137 0.035820 TGGCGATGGGTACTTTGACC 60.036 55.000 0.00 0.00 38.93 4.02
137 138 1.737793 CTTGGCGATGGGTACTTTGAC 59.262 52.381 0.00 0.00 0.00 3.18
138 139 1.948611 GCTTGGCGATGGGTACTTTGA 60.949 52.381 0.00 0.00 0.00 2.69
139 140 0.451783 GCTTGGCGATGGGTACTTTG 59.548 55.000 0.00 0.00 0.00 2.77
140 141 2.868253 GCTTGGCGATGGGTACTTT 58.132 52.632 0.00 0.00 0.00 2.66
141 142 4.637771 GCTTGGCGATGGGTACTT 57.362 55.556 0.00 0.00 0.00 2.24
152 153 1.847890 TACGGTTTGCTTCGCTTGGC 61.848 55.000 0.00 0.00 0.00 4.52
153 154 0.110373 GTACGGTTTGCTTCGCTTGG 60.110 55.000 0.00 0.00 0.00 3.61
154 155 0.584396 TGTACGGTTTGCTTCGCTTG 59.416 50.000 0.00 0.00 0.00 4.01
155 156 1.003223 GTTGTACGGTTTGCTTCGCTT 60.003 47.619 0.00 0.00 0.00 4.68
156 157 0.584876 GTTGTACGGTTTGCTTCGCT 59.415 50.000 0.00 0.00 0.00 4.93
157 158 0.720173 CGTTGTACGGTTTGCTTCGC 60.720 55.000 0.00 0.00 38.08 4.70
158 159 0.720173 GCGTTGTACGGTTTGCTTCG 60.720 55.000 1.14 0.00 42.82 3.79
159 160 0.385098 GGCGTTGTACGGTTTGCTTC 60.385 55.000 1.14 0.00 42.82 3.86
160 161 1.650363 GGCGTTGTACGGTTTGCTT 59.350 52.632 1.14 0.00 42.82 3.91
161 162 2.600475 CGGCGTTGTACGGTTTGCT 61.600 57.895 0.00 0.00 42.82 3.91
162 163 2.127534 CGGCGTTGTACGGTTTGC 60.128 61.111 0.00 0.00 42.82 3.68
163 164 2.552268 CCGGCGTTGTACGGTTTG 59.448 61.111 6.01 0.00 44.85 2.93
168 169 2.098233 AATGCTCCGGCGTTGTACG 61.098 57.895 6.01 0.00 44.87 3.67
169 170 3.884900 AATGCTCCGGCGTTGTAC 58.115 55.556 6.01 0.00 44.87 2.90
178 179 4.214383 CAGTCGCGCAATGCTCCG 62.214 66.667 8.75 6.24 43.27 4.63
179 180 4.527157 GCAGTCGCGCAATGCTCC 62.527 66.667 19.79 0.00 43.27 4.70
180 181 4.527157 GGCAGTCGCGCAATGCTC 62.527 66.667 23.81 14.50 43.27 4.26
182 183 4.824166 CTGGCAGTCGCGCAATGC 62.824 66.667 19.17 19.17 39.92 3.56
183 184 4.824166 GCTGGCAGTCGCGCAATG 62.824 66.667 17.16 5.53 39.92 2.82
190 191 4.056125 TGAGGACGCTGGCAGTCG 62.056 66.667 23.18 23.18 39.38 4.18
191 192 2.433318 GTGAGGACGCTGGCAGTC 60.433 66.667 17.16 7.37 37.86 3.51
192 193 4.008933 GGTGAGGACGCTGGCAGT 62.009 66.667 17.16 0.00 0.00 4.40
201 202 3.405592 TATCGTGCGCGGTGAGGAC 62.406 63.158 21.04 0.00 38.89 3.85
202 203 3.120979 CTATCGTGCGCGGTGAGGA 62.121 63.158 21.04 0.00 38.89 3.71
203 204 2.655364 CTATCGTGCGCGGTGAGG 60.655 66.667 21.04 3.90 38.89 3.86
204 205 1.516386 AACTATCGTGCGCGGTGAG 60.516 57.895 21.04 16.05 38.89 3.51
205 206 1.803922 CAACTATCGTGCGCGGTGA 60.804 57.895 21.04 0.00 38.89 4.02
206 207 2.695055 CAACTATCGTGCGCGGTG 59.305 61.111 21.04 12.33 38.89 4.94
207 208 2.508439 CCAACTATCGTGCGCGGT 60.508 61.111 21.04 16.51 38.89 5.68
208 209 3.261951 CCCAACTATCGTGCGCGG 61.262 66.667 21.04 6.32 38.89 6.46
209 210 3.925238 GCCCAACTATCGTGCGCG 61.925 66.667 14.79 14.79 39.92 6.86
210 211 2.511600 AGCCCAACTATCGTGCGC 60.512 61.111 0.00 0.00 0.00 6.09
211 212 1.447838 ACAGCCCAACTATCGTGCG 60.448 57.895 0.00 0.00 0.00 5.34
212 213 1.982073 GCACAGCCCAACTATCGTGC 61.982 60.000 0.00 0.00 42.41 5.34
213 214 1.369091 GGCACAGCCCAACTATCGTG 61.369 60.000 0.00 0.00 44.06 4.35
214 215 1.078426 GGCACAGCCCAACTATCGT 60.078 57.895 0.00 0.00 44.06 3.73
215 216 3.813596 GGCACAGCCCAACTATCG 58.186 61.111 0.00 0.00 44.06 2.92
230 231 0.394899 AACTAAGCCCATGAGCTGGC 60.395 55.000 1.05 2.02 44.11 4.85
231 232 1.673168 GAACTAAGCCCATGAGCTGG 58.327 55.000 1.05 1.56 44.11 4.85
232 233 1.293924 CGAACTAAGCCCATGAGCTG 58.706 55.000 1.05 0.00 44.11 4.24
234 235 0.462759 AGCGAACTAAGCCCATGAGC 60.463 55.000 0.00 0.00 34.64 4.26
235 236 2.546795 CCTAGCGAACTAAGCCCATGAG 60.547 54.545 0.00 0.00 34.64 2.90
236 237 1.412710 CCTAGCGAACTAAGCCCATGA 59.587 52.381 0.00 0.00 34.64 3.07
237 238 1.871080 CCTAGCGAACTAAGCCCATG 58.129 55.000 0.00 0.00 34.64 3.66
238 239 0.106894 GCCTAGCGAACTAAGCCCAT 59.893 55.000 0.00 0.00 30.77 4.00
239 240 1.520666 GCCTAGCGAACTAAGCCCA 59.479 57.895 0.00 0.00 30.77 5.36
240 241 1.227586 GGCCTAGCGAACTAAGCCC 60.228 63.158 0.00 0.00 46.43 5.19
241 242 4.440181 GGCCTAGCGAACTAAGCC 57.560 61.111 0.00 0.00 46.22 4.35
242 243 3.006003 AGAATAGGCCTAGCGAACTAAGC 59.994 47.826 19.33 0.00 35.44 3.09
243 244 4.551388 CAGAATAGGCCTAGCGAACTAAG 58.449 47.826 19.33 0.00 0.00 2.18
244 245 3.321111 CCAGAATAGGCCTAGCGAACTAA 59.679 47.826 19.33 0.00 0.00 2.24
245 246 2.891580 CCAGAATAGGCCTAGCGAACTA 59.108 50.000 19.33 0.00 0.00 2.24
246 247 1.689273 CCAGAATAGGCCTAGCGAACT 59.311 52.381 19.33 9.47 0.00 3.01
247 248 1.270358 CCCAGAATAGGCCTAGCGAAC 60.270 57.143 19.33 7.39 0.00 3.95
248 249 1.048601 CCCAGAATAGGCCTAGCGAA 58.951 55.000 19.33 0.00 0.00 4.70
249 250 0.105658 ACCCAGAATAGGCCTAGCGA 60.106 55.000 19.33 0.00 0.00 4.93
250 251 1.629043 TACCCAGAATAGGCCTAGCG 58.371 55.000 19.33 6.11 0.00 4.26
251 252 4.611367 TCTATACCCAGAATAGGCCTAGC 58.389 47.826 19.33 12.66 0.00 3.42
252 253 5.659079 CCTTCTATACCCAGAATAGGCCTAG 59.341 48.000 19.33 5.75 34.14 3.02
253 254 5.317803 TCCTTCTATACCCAGAATAGGCCTA 59.682 44.000 16.60 16.60 34.14 3.93
254 255 4.109765 TCCTTCTATACCCAGAATAGGCCT 59.890 45.833 11.78 11.78 34.14 5.19
255 256 4.426704 TCCTTCTATACCCAGAATAGGCC 58.573 47.826 0.00 0.00 34.14 5.19
256 257 6.043358 AGTTTCCTTCTATACCCAGAATAGGC 59.957 42.308 0.00 0.00 34.14 3.93
257 258 7.290248 TCAGTTTCCTTCTATACCCAGAATAGG 59.710 40.741 0.00 0.00 34.14 2.57
258 259 8.251383 TCAGTTTCCTTCTATACCCAGAATAG 57.749 38.462 0.00 0.00 34.14 1.73
259 260 8.618240 TTCAGTTTCCTTCTATACCCAGAATA 57.382 34.615 0.00 0.00 34.14 1.75
260 261 7.510675 TTCAGTTTCCTTCTATACCCAGAAT 57.489 36.000 0.00 0.00 34.14 2.40
261 262 6.945636 TTCAGTTTCCTTCTATACCCAGAA 57.054 37.500 0.00 0.00 33.55 3.02
262 263 6.500751 AGTTTCAGTTTCCTTCTATACCCAGA 59.499 38.462 0.00 0.00 0.00 3.86
263 264 6.595716 CAGTTTCAGTTTCCTTCTATACCCAG 59.404 42.308 0.00 0.00 0.00 4.45
264 265 6.043938 ACAGTTTCAGTTTCCTTCTATACCCA 59.956 38.462 0.00 0.00 0.00 4.51
265 266 6.371825 CACAGTTTCAGTTTCCTTCTATACCC 59.628 42.308 0.00 0.00 0.00 3.69
266 267 7.117956 GTCACAGTTTCAGTTTCCTTCTATACC 59.882 40.741 0.00 0.00 0.00 2.73
267 268 7.656137 TGTCACAGTTTCAGTTTCCTTCTATAC 59.344 37.037 0.00 0.00 0.00 1.47
268 269 7.732025 TGTCACAGTTTCAGTTTCCTTCTATA 58.268 34.615 0.00 0.00 0.00 1.31
269 270 6.591935 TGTCACAGTTTCAGTTTCCTTCTAT 58.408 36.000 0.00 0.00 0.00 1.98
270 271 5.984725 TGTCACAGTTTCAGTTTCCTTCTA 58.015 37.500 0.00 0.00 0.00 2.10
271 272 4.843728 TGTCACAGTTTCAGTTTCCTTCT 58.156 39.130 0.00 0.00 0.00 2.85
272 273 5.332707 GTTGTCACAGTTTCAGTTTCCTTC 58.667 41.667 0.00 0.00 0.00 3.46
273 274 4.142687 CGTTGTCACAGTTTCAGTTTCCTT 60.143 41.667 0.00 0.00 0.00 3.36
274 275 3.374058 CGTTGTCACAGTTTCAGTTTCCT 59.626 43.478 0.00 0.00 0.00 3.36
275 276 3.372822 TCGTTGTCACAGTTTCAGTTTCC 59.627 43.478 0.00 0.00 0.00 3.13
276 277 4.593597 TCGTTGTCACAGTTTCAGTTTC 57.406 40.909 0.00 0.00 0.00 2.78
277 278 5.048991 AGTTTCGTTGTCACAGTTTCAGTTT 60.049 36.000 0.00 0.00 0.00 2.66
278 279 4.454504 AGTTTCGTTGTCACAGTTTCAGTT 59.545 37.500 0.00 0.00 0.00 3.16
279 280 4.000988 AGTTTCGTTGTCACAGTTTCAGT 58.999 39.130 0.00 0.00 0.00 3.41
280 281 4.334443 CAGTTTCGTTGTCACAGTTTCAG 58.666 43.478 0.00 0.00 0.00 3.02
281 282 3.126171 CCAGTTTCGTTGTCACAGTTTCA 59.874 43.478 0.00 0.00 0.00 2.69
282 283 3.372822 TCCAGTTTCGTTGTCACAGTTTC 59.627 43.478 0.00 0.00 0.00 2.78
283 284 3.126343 GTCCAGTTTCGTTGTCACAGTTT 59.874 43.478 0.00 0.00 0.00 2.66
284 285 2.676342 GTCCAGTTTCGTTGTCACAGTT 59.324 45.455 0.00 0.00 0.00 3.16
285 286 2.277084 GTCCAGTTTCGTTGTCACAGT 58.723 47.619 0.00 0.00 0.00 3.55
286 287 2.276201 TGTCCAGTTTCGTTGTCACAG 58.724 47.619 0.00 0.00 0.00 3.66
287 288 2.093921 TCTGTCCAGTTTCGTTGTCACA 60.094 45.455 0.00 0.00 0.00 3.58
288 289 2.284417 GTCTGTCCAGTTTCGTTGTCAC 59.716 50.000 0.00 0.00 0.00 3.67
289 290 2.546778 GTCTGTCCAGTTTCGTTGTCA 58.453 47.619 0.00 0.00 0.00 3.58
290 291 1.521423 CGTCTGTCCAGTTTCGTTGTC 59.479 52.381 0.00 0.00 0.00 3.18
291 292 1.135527 TCGTCTGTCCAGTTTCGTTGT 59.864 47.619 0.00 0.00 0.00 3.32
292 293 1.847818 TCGTCTGTCCAGTTTCGTTG 58.152 50.000 0.00 0.00 0.00 4.10
293 294 2.589798 TTCGTCTGTCCAGTTTCGTT 57.410 45.000 0.00 0.00 0.00 3.85
294 295 2.589798 TTTCGTCTGTCCAGTTTCGT 57.410 45.000 0.00 0.00 0.00 3.85
295 296 4.468095 AAATTTCGTCTGTCCAGTTTCG 57.532 40.909 0.00 0.00 0.00 3.46
296 297 9.704098 GATATTAAATTTCGTCTGTCCAGTTTC 57.296 33.333 0.00 0.00 0.00 2.78
297 298 9.226606 TGATATTAAATTTCGTCTGTCCAGTTT 57.773 29.630 0.00 0.00 0.00 2.66
298 299 8.786826 TGATATTAAATTTCGTCTGTCCAGTT 57.213 30.769 0.00 0.00 0.00 3.16
299 300 8.964476 ATGATATTAAATTTCGTCTGTCCAGT 57.036 30.769 0.00 0.00 0.00 4.00
300 301 9.265901 AGATGATATTAAATTTCGTCTGTCCAG 57.734 33.333 0.00 0.00 35.95 3.86
301 302 9.261180 GAGATGATATTAAATTTCGTCTGTCCA 57.739 33.333 9.15 0.00 36.93 4.02
302 303 9.261180 TGAGATGATATTAAATTTCGTCTGTCC 57.739 33.333 9.15 0.00 36.93 4.02
304 305 8.755941 CGTGAGATGATATTAAATTTCGTCTGT 58.244 33.333 9.15 0.00 36.93 3.41
305 306 8.755941 ACGTGAGATGATATTAAATTTCGTCTG 58.244 33.333 9.15 0.59 36.93 3.51
306 307 8.873215 ACGTGAGATGATATTAAATTTCGTCT 57.127 30.769 0.00 5.18 38.66 4.18
352 353 9.113876 CGCTTCTTTTCATAAATTTACGTCTTT 57.886 29.630 0.00 0.00 0.00 2.52
353 354 8.287503 ACGCTTCTTTTCATAAATTTACGTCTT 58.712 29.630 0.00 0.00 0.00 3.01
354 355 7.803724 ACGCTTCTTTTCATAAATTTACGTCT 58.196 30.769 0.00 0.00 0.00 4.18
355 356 9.698617 ATACGCTTCTTTTCATAAATTTACGTC 57.301 29.630 0.00 0.00 0.00 4.34
364 365 9.316730 ACCGTTATAATACGCTTCTTTTCATAA 57.683 29.630 0.00 0.00 40.10 1.90
365 366 8.757789 CACCGTTATAATACGCTTCTTTTCATA 58.242 33.333 0.00 0.00 40.10 2.15
366 367 7.493320 TCACCGTTATAATACGCTTCTTTTCAT 59.507 33.333 0.00 0.00 40.10 2.57
367 368 6.812656 TCACCGTTATAATACGCTTCTTTTCA 59.187 34.615 0.00 0.00 40.10 2.69
368 369 7.225523 TCACCGTTATAATACGCTTCTTTTC 57.774 36.000 0.00 0.00 40.10 2.29
369 370 7.599630 TTCACCGTTATAATACGCTTCTTTT 57.400 32.000 0.00 0.00 40.10 2.27
370 371 7.042254 GGATTCACCGTTATAATACGCTTCTTT 60.042 37.037 0.00 0.00 40.10 2.52
371 372 6.423001 GGATTCACCGTTATAATACGCTTCTT 59.577 38.462 0.00 0.00 40.10 2.52
372 373 5.924825 GGATTCACCGTTATAATACGCTTCT 59.075 40.000 0.00 0.00 40.10 2.85
373 374 6.149504 GGATTCACCGTTATAATACGCTTC 57.850 41.667 0.00 0.00 40.10 3.86
388 389 4.793216 CGAATTGATTTTGTCGGATTCACC 59.207 41.667 0.00 0.00 34.34 4.02
389 390 5.283717 CACGAATTGATTTTGTCGGATTCAC 59.716 40.000 0.00 0.00 37.81 3.18
390 391 5.389778 CACGAATTGATTTTGTCGGATTCA 58.610 37.500 0.00 0.00 37.81 2.57
391 392 4.262976 GCACGAATTGATTTTGTCGGATTC 59.737 41.667 0.00 0.00 37.81 2.52
392 393 4.082787 AGCACGAATTGATTTTGTCGGATT 60.083 37.500 0.00 0.00 37.81 3.01
393 394 3.440173 AGCACGAATTGATTTTGTCGGAT 59.560 39.130 0.00 0.00 37.81 4.18
394 395 2.811431 AGCACGAATTGATTTTGTCGGA 59.189 40.909 0.00 0.00 37.81 4.55
395 396 3.201726 AGCACGAATTGATTTTGTCGG 57.798 42.857 0.00 0.00 37.81 4.79
396 397 6.853279 ATAAAGCACGAATTGATTTTGTCG 57.147 33.333 0.00 0.00 41.08 4.35
401 402 9.965824 CCCTAATAATAAAGCACGAATTGATTT 57.034 29.630 0.00 0.00 45.75 2.17
402 403 9.349713 TCCCTAATAATAAAGCACGAATTGATT 57.650 29.630 0.00 0.00 34.42 2.57
403 404 8.918202 TCCCTAATAATAAAGCACGAATTGAT 57.082 30.769 0.00 0.00 0.00 2.57
404 405 8.740123 TTCCCTAATAATAAAGCACGAATTGA 57.260 30.769 0.00 0.00 0.00 2.57
405 406 8.076178 CCTTCCCTAATAATAAAGCACGAATTG 58.924 37.037 0.00 0.00 0.00 2.32
406 407 7.230712 CCCTTCCCTAATAATAAAGCACGAATT 59.769 37.037 0.00 0.00 0.00 2.17
407 408 6.715264 CCCTTCCCTAATAATAAAGCACGAAT 59.285 38.462 0.00 0.00 0.00 3.34
408 409 6.059484 CCCTTCCCTAATAATAAAGCACGAA 58.941 40.000 0.00 0.00 0.00 3.85
409 410 5.367352 TCCCTTCCCTAATAATAAAGCACGA 59.633 40.000 0.00 0.00 0.00 4.35
410 411 5.617252 TCCCTTCCCTAATAATAAAGCACG 58.383 41.667 0.00 0.00 0.00 5.34
411 412 7.778382 TCTTTCCCTTCCCTAATAATAAAGCAC 59.222 37.037 0.00 0.00 0.00 4.40
412 413 7.878495 TCTTTCCCTTCCCTAATAATAAAGCA 58.122 34.615 0.00 0.00 0.00 3.91
413 414 8.797438 CATCTTTCCCTTCCCTAATAATAAAGC 58.203 37.037 0.00 0.00 0.00 3.51
417 418 8.614814 CCATCATCTTTCCCTTCCCTAATAATA 58.385 37.037 0.00 0.00 0.00 0.98
418 419 7.075526 ACCATCATCTTTCCCTTCCCTAATAAT 59.924 37.037 0.00 0.00 0.00 1.28
419 420 6.392842 ACCATCATCTTTCCCTTCCCTAATAA 59.607 38.462 0.00 0.00 0.00 1.40
420 421 5.917087 ACCATCATCTTTCCCTTCCCTAATA 59.083 40.000 0.00 0.00 0.00 0.98
421 422 4.733988 ACCATCATCTTTCCCTTCCCTAAT 59.266 41.667 0.00 0.00 0.00 1.73
422 423 4.119155 ACCATCATCTTTCCCTTCCCTAA 58.881 43.478 0.00 0.00 0.00 2.69
423 424 3.747852 ACCATCATCTTTCCCTTCCCTA 58.252 45.455 0.00 0.00 0.00 3.53
424 425 2.577970 ACCATCATCTTTCCCTTCCCT 58.422 47.619 0.00 0.00 0.00 4.20
425 426 4.166144 TCTTACCATCATCTTTCCCTTCCC 59.834 45.833 0.00 0.00 0.00 3.97
426 427 5.373812 TCTTACCATCATCTTTCCCTTCC 57.626 43.478 0.00 0.00 0.00 3.46
427 428 7.888250 AATTCTTACCATCATCTTTCCCTTC 57.112 36.000 0.00 0.00 0.00 3.46
428 429 8.670521 AAAATTCTTACCATCATCTTTCCCTT 57.329 30.769 0.00 0.00 0.00 3.95
429 430 8.670521 AAAAATTCTTACCATCATCTTTCCCT 57.329 30.769 0.00 0.00 0.00 4.20
461 462 6.183360 GGGATGGTATTACGTAGAACTTCAGT 60.183 42.308 0.00 0.00 0.00 3.41
474 475 1.271217 GGGGCGAAGGGATGGTATTAC 60.271 57.143 0.00 0.00 0.00 1.89
480 481 1.754234 CTTTGGGGCGAAGGGATGG 60.754 63.158 0.00 0.00 0.00 3.51
482 483 2.238701 ACCTTTGGGGCGAAGGGAT 61.239 57.895 14.72 0.00 46.46 3.85
490 491 0.321346 CATTTGGTCACCTTTGGGGC 59.679 55.000 0.00 0.00 39.10 5.80
493 494 1.618343 GGTCCATTTGGTCACCTTTGG 59.382 52.381 0.00 0.00 36.34 3.28
511 512 4.415150 CAGCATGCCAGGACCGGT 62.415 66.667 15.66 6.92 0.00 5.28
549 550 1.448922 TTATAAATGTGCCGGGCCGC 61.449 55.000 23.20 16.94 0.00 6.53
550 551 1.199097 GATTATAAATGTGCCGGGCCG 59.801 52.381 21.46 21.46 0.00 6.13
551 552 1.199097 CGATTATAAATGTGCCGGGCC 59.801 52.381 17.97 8.58 0.00 5.80
552 553 1.199097 CCGATTATAAATGTGCCGGGC 59.801 52.381 13.32 13.32 32.64 6.13
554 555 1.199097 GCCCGATTATAAATGTGCCGG 59.801 52.381 0.00 0.00 35.68 6.13
555 556 1.199097 GGCCCGATTATAAATGTGCCG 59.801 52.381 0.00 0.00 0.00 5.69
559 560 2.825532 GGCATGGCCCGATTATAAATGT 59.174 45.455 8.35 0.00 44.06 2.71
585 586 1.473258 GTGCAGATATTTGGGCCACA 58.527 50.000 5.23 0.00 0.00 4.17
588 589 0.947244 CTCGTGCAGATATTTGGGCC 59.053 55.000 0.00 0.00 0.00 5.80
593 594 0.933097 CAGCGCTCGTGCAGATATTT 59.067 50.000 7.13 0.00 39.64 1.40
616 617 1.512156 AAAGTAAACAGGGCGTGCCG 61.512 55.000 7.17 0.00 36.85 5.69
617 618 0.671796 AAAAGTAAACAGGGCGTGCC 59.328 50.000 7.17 1.16 0.00 5.01
618 619 2.502213 AAAAAGTAAACAGGGCGTGC 57.498 45.000 7.17 0.00 0.00 5.34
653 654 3.572682 GGCTGTTTTGGGGGCTAATATAC 59.427 47.826 0.00 0.00 0.00 1.47
748 749 3.806667 GCTCTCTGGGCCAGGCAT 61.807 66.667 32.23 0.00 31.51 4.40
785 789 1.143183 CGCCTAATACACGGGCTGT 59.857 57.895 0.00 0.00 43.29 4.40
786 790 1.143183 ACGCCTAATACACGGGCTG 59.857 57.895 0.00 0.00 43.29 4.85
787 791 1.143183 CACGCCTAATACACGGGCT 59.857 57.895 0.00 0.00 43.29 5.19
788 792 3.713963 CACGCCTAATACACGGGC 58.286 61.111 0.00 0.00 42.18 6.13
794 798 0.814010 CACCCAGGCACGCCTAATAC 60.814 60.000 10.95 0.00 46.28 1.89
899 908 0.753262 AGAGAAGGTCGCAAGTGTGT 59.247 50.000 0.00 0.00 39.48 3.72
943 955 2.225882 TGGATTGGGAGGAGAAGAGGAA 60.226 50.000 0.00 0.00 0.00 3.36
949 961 2.863884 AGGATTGGATTGGGAGGAGAA 58.136 47.619 0.00 0.00 0.00 2.87
990 1005 1.523032 GCCGTTCATCTTACCCGGG 60.523 63.158 22.25 22.25 39.05 5.73
1362 1377 2.359975 TCGCAGAGGTCTCGCAGA 60.360 61.111 12.46 8.91 34.09 4.26
1464 1479 6.795144 AGGATCATGATGAGGATGTCTATC 57.205 41.667 14.30 0.00 0.00 2.08
1542 1562 5.470098 ACCTCTACAACACAATTGTCATCAC 59.530 40.000 8.48 0.00 33.55 3.06
1547 1567 8.773404 AGTTATACCTCTACAACACAATTGTC 57.227 34.615 8.48 0.00 33.55 3.18
1627 1674 8.095792 TCACCAAGAATCAACATGCAAAATAAT 58.904 29.630 0.00 0.00 0.00 1.28
1641 1688 6.829849 TGATAGCACATATCACCAAGAATCA 58.170 36.000 0.00 0.00 44.33 2.57
1655 1702 9.486497 CTCTGTTCTTATTACATGATAGCACAT 57.514 33.333 0.00 0.00 0.00 3.21
1663 1710 8.481314 AGATGAAGCTCTGTTCTTATTACATGA 58.519 33.333 0.00 0.00 0.00 3.07
1788 1890 3.935315 AGTGATGAATGGTGAGTGACAG 58.065 45.455 0.00 0.00 0.00 3.51
1822 1924 7.062371 GGTTCTAATCGACACATACTATGATGC 59.938 40.741 2.90 0.00 0.00 3.91
1937 2047 2.299867 TGTACAGTGCAATGCAGAGAGA 59.700 45.455 15.18 0.00 40.08 3.10
1975 2085 3.323775 GGGTCTGGGGAAGGATTATACA 58.676 50.000 0.00 0.00 0.00 2.29
2289 2414 4.634004 CCACTGTAATCCACTAATGCGAAA 59.366 41.667 0.00 0.00 0.00 3.46
2294 2419 6.644347 AGAACTCCACTGTAATCCACTAATG 58.356 40.000 0.00 0.00 0.00 1.90


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.