Multiple sequence alignment - TraesCS2A01G206700

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS2A01G206700 chr2A 100.000 4185 0 0 1 4185 185964604 185960420 0.000000e+00 7729.0
1 TraesCS2A01G206700 chr2A 83.173 416 65 5 211 623 268984768 268985181 3.950000e-100 375.0
2 TraesCS2A01G206700 chr2A 79.429 175 33 2 3812 3985 672418835 672419007 2.040000e-23 121.0
3 TraesCS2A01G206700 chr2D 93.535 1222 53 20 911 2112 164744154 164745369 0.000000e+00 1796.0
4 TraesCS2A01G206700 chr2D 90.661 1285 43 35 2151 3383 164745465 164746724 0.000000e+00 1637.0
5 TraesCS2A01G206700 chr2D 89.512 410 13 16 3430 3830 164746717 164747105 3.760000e-135 492.0
6 TraesCS2A01G206700 chr2D 93.750 208 10 3 5 211 164743897 164744102 4.060000e-80 309.0
7 TraesCS2A01G206700 chr2D 96.571 175 5 1 4011 4185 164779306 164779479 5.290000e-74 289.0
8 TraesCS2A01G206700 chr2D 85.354 198 25 4 3830 4027 164777660 164777853 7.090000e-48 202.0
9 TraesCS2A01G206700 chr2B 92.752 1228 57 21 913 2112 232414618 232413395 0.000000e+00 1746.0
10 TraesCS2A01G206700 chr2B 91.556 1279 48 27 2151 3383 232413304 232412040 0.000000e+00 1709.0
11 TraesCS2A01G206700 chr2B 92.368 380 19 5 3430 3806 232412047 232411675 2.220000e-147 532.0
12 TraesCS2A01G206700 chr2B 87.290 417 46 7 211 623 5124486 5124899 1.760000e-128 470.0
13 TraesCS2A01G206700 chr2B 86.441 177 19 2 2340 2516 535566723 535566552 5.520000e-44 189.0
14 TraesCS2A01G206700 chr2B 94.737 95 4 1 624 717 232414693 232414599 3.370000e-31 147.0
15 TraesCS2A01G206700 chr3B 86.131 411 51 6 216 623 670067842 670067435 4.970000e-119 438.0
16 TraesCS2A01G206700 chr3B 88.793 116 12 1 2319 2433 261735717 261735832 1.570000e-29 141.0
17 TraesCS2A01G206700 chr7B 81.840 413 61 11 214 623 435096011 435096412 6.700000e-88 335.0
18 TraesCS2A01G206700 chr7B 87.755 196 18 3 2322 2516 361982904 361982714 1.510000e-54 224.0
19 TraesCS2A01G206700 chr7B 86.432 199 21 3 2319 2516 389908751 389908558 3.280000e-51 213.0
20 TraesCS2A01G206700 chr1A 80.241 415 73 8 214 623 428194545 428194955 1.890000e-78 303.0
21 TraesCS2A01G206700 chr1A 91.045 201 13 5 723 918 463291959 463291759 2.480000e-67 267.0
22 TraesCS2A01G206700 chr5A 93.299 194 12 1 727 919 101083457 101083264 6.850000e-73 285.0
23 TraesCS2A01G206700 chr5A 93.651 189 8 4 734 918 71460208 71460396 3.190000e-71 279.0
24 TraesCS2A01G206700 chr5A 94.475 181 6 3 734 910 29678329 29678149 4.120000e-70 276.0
25 TraesCS2A01G206700 chr4A 94.444 180 8 1 732 909 609793075 609793254 4.120000e-70 276.0
26 TraesCS2A01G206700 chr4A 93.407 182 10 2 730 909 13265338 13265157 6.900000e-68 268.0
27 TraesCS2A01G206700 chr6A 95.376 173 5 3 740 909 494463270 494463098 5.330000e-69 272.0
28 TraesCS2A01G206700 chr3A 90.640 203 14 5 721 918 288535633 288535835 8.920000e-67 265.0
29 TraesCS2A01G206700 chr3A 83.838 198 25 4 2320 2516 344049389 344049198 9.240000e-42 182.0
30 TraesCS2A01G206700 chr6D 91.534 189 12 3 726 910 445581629 445581441 1.490000e-64 257.0
31 TraesCS2A01G206700 chr6D 75.124 402 69 26 214 608 97784094 97783717 4.330000e-35 159.0
32 TraesCS2A01G206700 chr4B 86.935 199 20 3 2319 2516 287895955 287895762 7.040000e-53 219.0
33 TraesCS2A01G206700 chr1B 85.321 218 23 5 2303 2516 327718215 327718427 2.530000e-52 217.0
34 TraesCS2A01G206700 chr1B 85.876 177 20 2 2340 2516 399621435 399621606 2.570000e-42 183.0
35 TraesCS2A01G206700 chr1D 78.481 316 57 9 308 621 205971630 205971324 3.300000e-46 196.0
36 TraesCS2A01G206700 chr1D 84.158 101 13 3 214 313 22034115 22034213 1.240000e-15 95.3


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS2A01G206700 chr2A 185960420 185964604 4184 True 7729.0 7729 100.00000 1 4185 1 chr2A.!!$R1 4184
1 TraesCS2A01G206700 chr2D 164743897 164747105 3208 False 1058.5 1796 91.86450 5 3830 4 chr2D.!!$F1 3825
2 TraesCS2A01G206700 chr2D 164777660 164779479 1819 False 245.5 289 90.96250 3830 4185 2 chr2D.!!$F2 355
3 TraesCS2A01G206700 chr2B 232411675 232414693 3018 True 1033.5 1746 92.85325 624 3806 4 chr2B.!!$R2 3182

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
500 502 0.039617 TGCGGAAATTTGCACGGAAG 60.04 50.0 10.49 0.0 35.9 3.46 F
1701 1709 0.109735 CGCTCCGCTTTTTCCCTTTC 60.11 55.0 0.00 0.0 0.0 2.62 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1884 1918 0.032678 AAGGCATCGCTCATAGTCCG 59.967 55.0 0.0 0.0 0.0 4.79 R
3214 3371 0.111253 GATAGAAGCATGGGGTGGGG 59.889 60.0 0.0 0.0 0.0 4.96 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
33 34 4.663334 ACAATTCCCCCTTTTCTACACTC 58.337 43.478 0.00 0.00 0.00 3.51
67 68 6.877611 AAACCGTTGAGAGAAATACACATT 57.122 33.333 0.00 0.00 0.00 2.71
95 96 5.617528 AGACTCCGACTAGTCAAGAGATA 57.382 43.478 31.80 8.87 46.89 1.98
112 114 2.472414 ATACGTTTGGCCGCCTTCCA 62.472 55.000 11.61 0.00 0.00 3.53
115 117 2.915137 TTTGGCCGCCTTCCAACC 60.915 61.111 11.61 0.00 42.75 3.77
116 118 3.444818 TTTGGCCGCCTTCCAACCT 62.445 57.895 11.61 0.00 42.75 3.50
136 138 7.343833 CCAACCTAGGGAGTAGAGTAAAATACA 59.656 40.741 14.81 0.00 0.00 2.29
168 170 9.897744 AAATACAACACAGAAATACAATGTCAG 57.102 29.630 0.00 0.00 0.00 3.51
172 174 9.453572 ACAACACAGAAATACAATGTCAGATAT 57.546 29.630 0.00 0.00 0.00 1.63
173 175 9.712359 CAACACAGAAATACAATGTCAGATATG 57.288 33.333 0.00 0.00 0.00 1.78
174 176 9.453572 AACACAGAAATACAATGTCAGATATGT 57.546 29.630 0.00 0.00 0.00 2.29
176 178 8.340443 CACAGAAATACAATGTCAGATATGTGG 58.660 37.037 0.00 0.00 0.00 4.17
177 179 8.049117 ACAGAAATACAATGTCAGATATGTGGT 58.951 33.333 0.00 0.00 0.00 4.16
178 180 9.546428 CAGAAATACAATGTCAGATATGTGGTA 57.454 33.333 0.00 0.00 0.00 3.25
203 205 4.611367 TCTTTTACAGAGGGAGTAGGGAG 58.389 47.826 0.00 0.00 0.00 4.30
204 206 4.045590 TCTTTTACAGAGGGAGTAGGGAGT 59.954 45.833 0.00 0.00 0.00 3.85
205 207 5.254737 TCTTTTACAGAGGGAGTAGGGAGTA 59.745 44.000 0.00 0.00 0.00 2.59
206 208 4.792513 TTACAGAGGGAGTAGGGAGTAG 57.207 50.000 0.00 0.00 0.00 2.57
207 209 2.861261 ACAGAGGGAGTAGGGAGTAGA 58.139 52.381 0.00 0.00 0.00 2.59
208 210 2.781174 ACAGAGGGAGTAGGGAGTAGAG 59.219 54.545 0.00 0.00 0.00 2.43
209 211 2.781174 CAGAGGGAGTAGGGAGTAGAGT 59.219 54.545 0.00 0.00 0.00 3.24
210 212 3.975312 CAGAGGGAGTAGGGAGTAGAGTA 59.025 52.174 0.00 0.00 0.00 2.59
211 213 4.600111 CAGAGGGAGTAGGGAGTAGAGTAT 59.400 50.000 0.00 0.00 0.00 2.12
212 214 5.786457 CAGAGGGAGTAGGGAGTAGAGTATA 59.214 48.000 0.00 0.00 0.00 1.47
213 215 6.027482 AGAGGGAGTAGGGAGTAGAGTATAG 58.973 48.000 0.00 0.00 0.00 1.31
214 216 5.102967 AGGGAGTAGGGAGTAGAGTATAGG 58.897 50.000 0.00 0.00 0.00 2.57
215 217 5.100094 GGGAGTAGGGAGTAGAGTATAGGA 58.900 50.000 0.00 0.00 0.00 2.94
216 218 5.551189 GGGAGTAGGGAGTAGAGTATAGGAA 59.449 48.000 0.00 0.00 0.00 3.36
217 219 6.045341 GGGAGTAGGGAGTAGAGTATAGGAAA 59.955 46.154 0.00 0.00 0.00 3.13
218 220 7.422325 GGGAGTAGGGAGTAGAGTATAGGAAAA 60.422 44.444 0.00 0.00 0.00 2.29
219 221 8.172070 GGAGTAGGGAGTAGAGTATAGGAAAAT 58.828 40.741 0.00 0.00 0.00 1.82
220 222 8.943594 AGTAGGGAGTAGAGTATAGGAAAATG 57.056 38.462 0.00 0.00 0.00 2.32
221 223 6.673839 AGGGAGTAGAGTATAGGAAAATGC 57.326 41.667 0.00 0.00 0.00 3.56
222 224 6.143915 AGGGAGTAGAGTATAGGAAAATGCA 58.856 40.000 0.00 0.00 0.00 3.96
223 225 6.042208 AGGGAGTAGAGTATAGGAAAATGCAC 59.958 42.308 0.00 0.00 0.00 4.57
224 226 6.183360 GGGAGTAGAGTATAGGAAAATGCACA 60.183 42.308 0.00 0.00 0.00 4.57
225 227 7.272978 GGAGTAGAGTATAGGAAAATGCACAA 58.727 38.462 0.00 0.00 0.00 3.33
226 228 7.439655 GGAGTAGAGTATAGGAAAATGCACAAG 59.560 40.741 0.00 0.00 0.00 3.16
227 229 8.079211 AGTAGAGTATAGGAAAATGCACAAGA 57.921 34.615 0.00 0.00 0.00 3.02
228 230 8.200792 AGTAGAGTATAGGAAAATGCACAAGAG 58.799 37.037 0.00 0.00 0.00 2.85
229 231 5.819901 AGAGTATAGGAAAATGCACAAGAGC 59.180 40.000 0.00 0.00 0.00 4.09
236 238 2.113774 TGCACAAGAGCACCTGGG 59.886 61.111 0.00 0.00 40.11 4.45
237 239 2.113986 GCACAAGAGCACCTGGGT 59.886 61.111 0.00 0.00 0.00 4.51
255 257 1.729586 GTGCTCCACCCCCTATATGA 58.270 55.000 0.00 0.00 0.00 2.15
256 258 2.054799 GTGCTCCACCCCCTATATGAA 58.945 52.381 0.00 0.00 0.00 2.57
257 259 2.644798 GTGCTCCACCCCCTATATGAAT 59.355 50.000 0.00 0.00 0.00 2.57
258 260 3.844211 GTGCTCCACCCCCTATATGAATA 59.156 47.826 0.00 0.00 0.00 1.75
259 261 3.844211 TGCTCCACCCCCTATATGAATAC 59.156 47.826 0.00 0.00 0.00 1.89
260 262 3.200165 GCTCCACCCCCTATATGAATACC 59.800 52.174 0.00 0.00 0.00 2.73
261 263 4.435137 CTCCACCCCCTATATGAATACCA 58.565 47.826 0.00 0.00 0.00 3.25
262 264 4.845541 TCCACCCCCTATATGAATACCAA 58.154 43.478 0.00 0.00 0.00 3.67
263 265 5.236334 TCCACCCCCTATATGAATACCAAA 58.764 41.667 0.00 0.00 0.00 3.28
264 266 5.860666 TCCACCCCCTATATGAATACCAAAT 59.139 40.000 0.00 0.00 0.00 2.32
265 267 6.336930 TCCACCCCCTATATGAATACCAAATT 59.663 38.462 0.00 0.00 0.00 1.82
266 268 6.663523 CCACCCCCTATATGAATACCAAATTC 59.336 42.308 0.00 0.00 0.00 2.17
267 269 7.237982 CACCCCCTATATGAATACCAAATTCA 58.762 38.462 3.13 3.13 41.59 2.57
268 270 7.728083 CACCCCCTATATGAATACCAAATTCAA 59.272 37.037 4.67 0.00 40.84 2.69
269 271 8.293216 ACCCCCTATATGAATACCAAATTCAAA 58.707 33.333 4.67 0.00 40.84 2.69
270 272 9.153479 CCCCCTATATGAATACCAAATTCAAAA 57.847 33.333 4.67 0.00 40.84 2.44
316 318 9.705103 AAAAATCTGAGATCTTGGGATATCAAA 57.295 29.630 4.83 0.00 45.66 2.69
317 319 8.688747 AAATCTGAGATCTTGGGATATCAAAC 57.311 34.615 4.83 0.00 45.66 2.93
318 320 6.179906 TCTGAGATCTTGGGATATCAAACC 57.820 41.667 4.83 0.00 45.66 3.27
319 321 5.907662 TCTGAGATCTTGGGATATCAAACCT 59.092 40.000 4.83 0.00 45.66 3.50
320 322 7.075797 TCTGAGATCTTGGGATATCAAACCTA 58.924 38.462 4.83 0.00 45.66 3.08
321 323 7.234371 TCTGAGATCTTGGGATATCAAACCTAG 59.766 40.741 4.83 3.64 45.66 3.02
322 324 6.270927 TGAGATCTTGGGATATCAAACCTAGG 59.729 42.308 7.41 7.41 44.15 3.02
323 325 6.393897 AGATCTTGGGATATCAAACCTAGGA 58.606 40.000 17.98 0.00 31.46 2.94
324 326 6.500049 AGATCTTGGGATATCAAACCTAGGAG 59.500 42.308 17.98 4.98 31.46 3.69
325 327 4.348168 TCTTGGGATATCAAACCTAGGAGC 59.652 45.833 17.98 0.00 0.00 4.70
326 328 3.941629 TGGGATATCAAACCTAGGAGCT 58.058 45.455 17.98 0.00 0.00 4.09
327 329 3.904339 TGGGATATCAAACCTAGGAGCTC 59.096 47.826 17.98 4.71 0.00 4.09
328 330 3.904339 GGGATATCAAACCTAGGAGCTCA 59.096 47.826 17.98 0.00 0.00 4.26
329 331 4.348168 GGGATATCAAACCTAGGAGCTCAA 59.652 45.833 17.98 1.54 0.00 3.02
330 332 5.013599 GGGATATCAAACCTAGGAGCTCAAT 59.986 44.000 17.98 5.95 0.00 2.57
331 333 6.466470 GGGATATCAAACCTAGGAGCTCAATT 60.466 42.308 17.98 2.84 0.00 2.32
332 334 7.001073 GGATATCAAACCTAGGAGCTCAATTT 58.999 38.462 17.98 0.00 0.00 1.82
333 335 8.157476 GGATATCAAACCTAGGAGCTCAATTTA 58.843 37.037 17.98 1.41 0.00 1.40
334 336 8.910351 ATATCAAACCTAGGAGCTCAATTTAC 57.090 34.615 17.98 0.00 0.00 2.01
335 337 6.374417 TCAAACCTAGGAGCTCAATTTACT 57.626 37.500 17.98 4.55 0.00 2.24
336 338 6.407202 TCAAACCTAGGAGCTCAATTTACTC 58.593 40.000 17.98 0.00 0.00 2.59
342 344 3.944087 GGAGCTCAATTTACTCCTGTGT 58.056 45.455 17.19 0.00 45.44 3.72
343 345 5.086104 GGAGCTCAATTTACTCCTGTGTA 57.914 43.478 17.19 0.00 45.44 2.90
344 346 5.488341 GGAGCTCAATTTACTCCTGTGTAA 58.512 41.667 17.19 0.00 45.44 2.41
345 347 5.938125 GGAGCTCAATTTACTCCTGTGTAAA 59.062 40.000 17.19 6.92 45.44 2.01
346 348 6.092807 GGAGCTCAATTTACTCCTGTGTAAAG 59.907 42.308 17.19 0.00 45.44 1.85
347 349 6.534634 AGCTCAATTTACTCCTGTGTAAAGT 58.465 36.000 9.54 5.27 43.03 2.66
348 350 6.998673 AGCTCAATTTACTCCTGTGTAAAGTT 59.001 34.615 9.54 3.76 43.03 2.66
349 351 7.502561 AGCTCAATTTACTCCTGTGTAAAGTTT 59.497 33.333 9.54 0.00 43.03 2.66
350 352 7.803659 GCTCAATTTACTCCTGTGTAAAGTTTC 59.196 37.037 9.54 0.00 43.03 2.78
351 353 7.857569 TCAATTTACTCCTGTGTAAAGTTTCG 58.142 34.615 9.54 0.00 43.03 3.46
352 354 7.496591 TCAATTTACTCCTGTGTAAAGTTTCGT 59.503 33.333 9.54 0.00 43.03 3.85
353 355 6.592798 TTTACTCCTGTGTAAAGTTTCGTG 57.407 37.500 0.00 0.00 37.45 4.35
354 356 4.395959 ACTCCTGTGTAAAGTTTCGTGA 57.604 40.909 0.00 0.00 0.00 4.35
355 357 4.761975 ACTCCTGTGTAAAGTTTCGTGAA 58.238 39.130 0.00 0.00 0.00 3.18
356 358 5.180271 ACTCCTGTGTAAAGTTTCGTGAAA 58.820 37.500 0.00 0.00 0.00 2.69
357 359 5.644636 ACTCCTGTGTAAAGTTTCGTGAAAA 59.355 36.000 0.00 0.00 31.33 2.29
358 360 6.149807 ACTCCTGTGTAAAGTTTCGTGAAAAA 59.850 34.615 0.00 0.00 31.33 1.94
395 397 9.905713 ATGTATCCATGACAAACTAAATACAGT 57.094 29.630 0.00 0.00 33.37 3.55
396 398 9.378551 TGTATCCATGACAAACTAAATACAGTC 57.621 33.333 0.00 0.00 0.00 3.51
397 399 7.865706 ATCCATGACAAACTAAATACAGTCC 57.134 36.000 0.00 0.00 0.00 3.85
398 400 6.774673 TCCATGACAAACTAAATACAGTCCA 58.225 36.000 0.00 0.00 0.00 4.02
399 401 6.878923 TCCATGACAAACTAAATACAGTCCAG 59.121 38.462 0.00 0.00 0.00 3.86
400 402 6.403636 CCATGACAAACTAAATACAGTCCAGC 60.404 42.308 0.00 0.00 0.00 4.85
401 403 5.001232 TGACAAACTAAATACAGTCCAGCC 58.999 41.667 0.00 0.00 0.00 4.85
402 404 5.221843 TGACAAACTAAATACAGTCCAGCCT 60.222 40.000 0.00 0.00 0.00 4.58
403 405 6.014070 TGACAAACTAAATACAGTCCAGCCTA 60.014 38.462 0.00 0.00 0.00 3.93
404 406 6.958767 ACAAACTAAATACAGTCCAGCCTAT 58.041 36.000 0.00 0.00 0.00 2.57
405 407 6.823689 ACAAACTAAATACAGTCCAGCCTATG 59.176 38.462 0.00 0.00 0.00 2.23
406 408 6.808321 AACTAAATACAGTCCAGCCTATGA 57.192 37.500 0.00 0.00 0.00 2.15
407 409 7.380423 AACTAAATACAGTCCAGCCTATGAT 57.620 36.000 0.00 0.00 0.00 2.45
408 410 6.998802 ACTAAATACAGTCCAGCCTATGATC 58.001 40.000 0.00 0.00 0.00 2.92
409 411 4.899352 AATACAGTCCAGCCTATGATCC 57.101 45.455 0.00 0.00 0.00 3.36
410 412 2.180946 ACAGTCCAGCCTATGATCCA 57.819 50.000 0.00 0.00 0.00 3.41
411 413 2.481441 ACAGTCCAGCCTATGATCCAA 58.519 47.619 0.00 0.00 0.00 3.53
412 414 2.171448 ACAGTCCAGCCTATGATCCAAC 59.829 50.000 0.00 0.00 0.00 3.77
413 415 2.437281 CAGTCCAGCCTATGATCCAACT 59.563 50.000 0.00 0.00 0.00 3.16
414 416 3.643320 CAGTCCAGCCTATGATCCAACTA 59.357 47.826 0.00 0.00 0.00 2.24
415 417 4.101585 CAGTCCAGCCTATGATCCAACTAA 59.898 45.833 0.00 0.00 0.00 2.24
416 418 4.721776 AGTCCAGCCTATGATCCAACTAAA 59.278 41.667 0.00 0.00 0.00 1.85
417 419 5.370880 AGTCCAGCCTATGATCCAACTAAAT 59.629 40.000 0.00 0.00 0.00 1.40
418 420 6.558775 AGTCCAGCCTATGATCCAACTAAATA 59.441 38.462 0.00 0.00 0.00 1.40
419 421 6.876257 GTCCAGCCTATGATCCAACTAAATAG 59.124 42.308 0.00 0.00 0.00 1.73
420 422 6.558775 TCCAGCCTATGATCCAACTAAATAGT 59.441 38.462 0.00 0.00 38.39 2.12
421 423 7.072454 TCCAGCCTATGATCCAACTAAATAGTT 59.928 37.037 0.00 0.00 46.76 2.24
422 424 7.721399 CCAGCCTATGATCCAACTAAATAGTTT 59.279 37.037 3.12 0.00 43.57 2.66
423 425 9.125026 CAGCCTATGATCCAACTAAATAGTTTT 57.875 33.333 3.12 0.00 43.57 2.43
424 426 9.700831 AGCCTATGATCCAACTAAATAGTTTTT 57.299 29.630 3.12 0.00 43.57 1.94
425 427 9.736023 GCCTATGATCCAACTAAATAGTTTTTG 57.264 33.333 3.12 0.00 43.57 2.44
462 464 4.330944 TTTTGTCTCTTTACCGAGAGCA 57.669 40.909 0.00 0.00 42.32 4.26
463 465 4.537135 TTTGTCTCTTTACCGAGAGCAT 57.463 40.909 0.00 0.00 42.32 3.79
464 466 3.784701 TGTCTCTTTACCGAGAGCATC 57.215 47.619 0.00 0.00 42.32 3.91
465 467 3.089284 TGTCTCTTTACCGAGAGCATCA 58.911 45.455 0.00 0.00 42.32 3.07
466 468 3.119459 TGTCTCTTTACCGAGAGCATCAC 60.119 47.826 0.00 0.00 42.32 3.06
497 499 1.212616 TTTTGCGGAAATTTGCACGG 58.787 45.000 10.49 0.00 41.57 4.94
498 500 0.385751 TTTGCGGAAATTTGCACGGA 59.614 45.000 10.49 3.82 41.57 4.69
499 501 0.385751 TTGCGGAAATTTGCACGGAA 59.614 45.000 10.49 9.41 41.57 4.30
500 502 0.039617 TGCGGAAATTTGCACGGAAG 60.040 50.000 10.49 0.00 35.90 3.46
512 514 3.855159 ACGGAAGTAGATTGGGCAC 57.145 52.632 0.00 0.00 46.88 5.01
527 529 1.594331 GGCACCCAAGTTCGATATCC 58.406 55.000 0.00 0.00 0.00 2.59
528 530 1.594331 GCACCCAAGTTCGATATCCC 58.406 55.000 0.00 0.00 0.00 3.85
529 531 1.134220 GCACCCAAGTTCGATATCCCA 60.134 52.381 0.00 0.00 0.00 4.37
530 532 2.682563 GCACCCAAGTTCGATATCCCAA 60.683 50.000 0.00 0.00 0.00 4.12
531 533 3.616219 CACCCAAGTTCGATATCCCAAA 58.384 45.455 0.00 0.00 0.00 3.28
532 534 4.013728 CACCCAAGTTCGATATCCCAAAA 58.986 43.478 0.00 0.00 0.00 2.44
533 535 4.644685 CACCCAAGTTCGATATCCCAAAAT 59.355 41.667 0.00 0.00 0.00 1.82
534 536 4.887655 ACCCAAGTTCGATATCCCAAAATC 59.112 41.667 0.00 0.00 0.00 2.17
535 537 4.278419 CCCAAGTTCGATATCCCAAAATCC 59.722 45.833 0.00 0.00 0.00 3.01
536 538 4.887071 CCAAGTTCGATATCCCAAAATCCA 59.113 41.667 0.00 0.00 0.00 3.41
537 539 5.359576 CCAAGTTCGATATCCCAAAATCCAA 59.640 40.000 0.00 0.00 0.00 3.53
538 540 6.460123 CCAAGTTCGATATCCCAAAATCCAAG 60.460 42.308 0.00 0.00 0.00 3.61
539 541 6.001449 AGTTCGATATCCCAAAATCCAAGA 57.999 37.500 0.00 0.00 0.00 3.02
540 542 6.605119 AGTTCGATATCCCAAAATCCAAGAT 58.395 36.000 0.00 0.00 0.00 2.40
541 543 7.745717 AGTTCGATATCCCAAAATCCAAGATA 58.254 34.615 0.00 0.00 0.00 1.98
542 544 8.386264 AGTTCGATATCCCAAAATCCAAGATAT 58.614 33.333 0.00 0.00 33.83 1.63
543 545 9.014297 GTTCGATATCCCAAAATCCAAGATATT 57.986 33.333 0.00 0.00 31.84 1.28
544 546 9.586732 TTCGATATCCCAAAATCCAAGATATTT 57.413 29.630 0.00 0.00 31.84 1.40
545 547 9.586732 TCGATATCCCAAAATCCAAGATATTTT 57.413 29.630 0.00 0.00 37.08 1.82
589 591 7.881643 TTTTCGAATTTAATGTTCACATGGG 57.118 32.000 0.00 0.00 36.56 4.00
590 592 5.574891 TCGAATTTAATGTTCACATGGGG 57.425 39.130 0.00 0.00 36.56 4.96
591 593 4.400884 TCGAATTTAATGTTCACATGGGGG 59.599 41.667 0.00 0.00 36.56 5.40
592 594 4.159506 CGAATTTAATGTTCACATGGGGGT 59.840 41.667 0.00 0.00 36.56 4.95
593 595 5.418676 GAATTTAATGTTCACATGGGGGTG 58.581 41.667 0.00 0.00 40.16 4.61
594 596 1.846007 TAATGTTCACATGGGGGTGC 58.154 50.000 0.00 0.00 38.66 5.01
595 597 0.178938 AATGTTCACATGGGGGTGCA 60.179 50.000 0.00 0.00 38.66 4.57
596 598 0.612732 ATGTTCACATGGGGGTGCAG 60.613 55.000 0.00 0.00 38.66 4.41
597 599 2.283101 TTCACATGGGGGTGCAGC 60.283 61.111 7.55 7.55 38.66 5.25
598 600 3.144121 TTCACATGGGGGTGCAGCA 62.144 57.895 19.06 0.00 38.66 4.41
599 601 3.376078 CACATGGGGGTGCAGCAC 61.376 66.667 17.97 17.97 31.10 4.40
608 610 3.368571 GTGCAGCACCCAAGAGCC 61.369 66.667 15.27 0.00 0.00 4.70
609 611 3.888460 TGCAGCACCCAAGAGCCA 61.888 61.111 0.00 0.00 0.00 4.75
610 612 2.598394 GCAGCACCCAAGAGCCAA 60.598 61.111 0.00 0.00 0.00 4.52
611 613 2.202395 GCAGCACCCAAGAGCCAAA 61.202 57.895 0.00 0.00 0.00 3.28
612 614 1.747325 GCAGCACCCAAGAGCCAAAA 61.747 55.000 0.00 0.00 0.00 2.44
613 615 0.752054 CAGCACCCAAGAGCCAAAAA 59.248 50.000 0.00 0.00 0.00 1.94
614 616 1.345415 CAGCACCCAAGAGCCAAAAAT 59.655 47.619 0.00 0.00 0.00 1.82
615 617 2.049372 AGCACCCAAGAGCCAAAAATT 58.951 42.857 0.00 0.00 0.00 1.82
616 618 2.037641 AGCACCCAAGAGCCAAAAATTC 59.962 45.455 0.00 0.00 0.00 2.17
617 619 2.676076 CACCCAAGAGCCAAAAATTCG 58.324 47.619 0.00 0.00 0.00 3.34
618 620 1.000843 ACCCAAGAGCCAAAAATTCGC 59.999 47.619 0.00 0.00 0.00 4.70
619 621 1.339711 CCAAGAGCCAAAAATTCGCG 58.660 50.000 0.00 0.00 0.00 5.87
620 622 1.335872 CCAAGAGCCAAAAATTCGCGT 60.336 47.619 5.77 0.00 0.00 6.01
621 623 1.978782 CAAGAGCCAAAAATTCGCGTC 59.021 47.619 5.77 0.00 0.00 5.19
622 624 0.521735 AGAGCCAAAAATTCGCGTCC 59.478 50.000 5.77 0.00 0.00 4.79
631 633 2.752144 AATTCGCGTCCGTAGAGTAG 57.248 50.000 5.77 0.00 35.54 2.57
654 656 2.277756 CTCCAGGCGCGTACGTAC 60.278 66.667 17.90 15.90 42.83 3.67
662 664 2.290367 AGGCGCGTACGTACATTATACA 59.710 45.455 24.50 0.00 42.83 2.29
718 721 2.755952 AAAATCCCCAGGTATGAGCC 57.244 50.000 0.00 0.00 0.00 4.70
719 722 0.853530 AAATCCCCAGGTATGAGCCC 59.146 55.000 0.00 0.00 0.00 5.19
720 723 1.418908 AATCCCCAGGTATGAGCCCG 61.419 60.000 0.00 0.00 0.00 6.13
721 724 3.560251 CCCCAGGTATGAGCCCGG 61.560 72.222 0.00 0.00 0.00 5.73
722 725 2.445845 CCCAGGTATGAGCCCGGA 60.446 66.667 0.73 0.00 0.00 5.14
723 726 2.070039 CCCAGGTATGAGCCCGGAA 61.070 63.158 0.73 0.00 0.00 4.30
724 727 1.632018 CCCAGGTATGAGCCCGGAAA 61.632 60.000 0.73 0.00 0.00 3.13
725 728 0.254747 CCAGGTATGAGCCCGGAAAA 59.745 55.000 0.73 0.00 0.00 2.29
726 729 1.340600 CCAGGTATGAGCCCGGAAAAA 60.341 52.381 0.73 0.00 0.00 1.94
752 755 9.442047 AAAAAGATCTGTTTAGGACACATCTAG 57.558 33.333 9.24 0.00 41.41 2.43
753 756 7.962995 AAGATCTGTTTAGGACACATCTAGA 57.037 36.000 0.00 0.00 41.41 2.43
754 757 8.546083 AAGATCTGTTTAGGACACATCTAGAT 57.454 34.615 0.00 0.00 41.41 1.98
755 758 7.950512 AGATCTGTTTAGGACACATCTAGATG 58.049 38.462 27.63 27.63 40.76 2.90
782 785 9.317936 TGACATAATTAAGTCACATCTAAGCTG 57.682 33.333 17.28 0.00 39.65 4.24
783 786 9.534565 GACATAATTAAGTCACATCTAAGCTGA 57.465 33.333 14.39 0.00 34.93 4.26
789 792 8.846943 TTAAGTCACATCTAAGCTGATTTTCA 57.153 30.769 0.00 0.00 0.00 2.69
790 793 6.734104 AGTCACATCTAAGCTGATTTTCAC 57.266 37.500 0.00 0.00 0.00 3.18
791 794 5.645497 AGTCACATCTAAGCTGATTTTCACC 59.355 40.000 0.00 0.00 0.00 4.02
792 795 4.943705 TCACATCTAAGCTGATTTTCACCC 59.056 41.667 0.00 0.00 0.00 4.61
793 796 4.946157 CACATCTAAGCTGATTTTCACCCT 59.054 41.667 0.00 0.00 0.00 4.34
794 797 4.946157 ACATCTAAGCTGATTTTCACCCTG 59.054 41.667 0.00 0.00 0.00 4.45
795 798 4.640771 TCTAAGCTGATTTTCACCCTGT 57.359 40.909 0.00 0.00 0.00 4.00
796 799 4.985538 TCTAAGCTGATTTTCACCCTGTT 58.014 39.130 0.00 0.00 0.00 3.16
797 800 5.385198 TCTAAGCTGATTTTCACCCTGTTT 58.615 37.500 0.00 0.00 0.00 2.83
798 801 4.326504 AAGCTGATTTTCACCCTGTTTG 57.673 40.909 0.00 0.00 0.00 2.93
799 802 3.299503 AGCTGATTTTCACCCTGTTTGT 58.700 40.909 0.00 0.00 0.00 2.83
800 803 3.068590 AGCTGATTTTCACCCTGTTTGTG 59.931 43.478 0.00 0.00 35.01 3.33
801 804 3.799917 GCTGATTTTCACCCTGTTTGTGG 60.800 47.826 0.00 0.00 34.46 4.17
802 805 3.370104 TGATTTTCACCCTGTTTGTGGT 58.630 40.909 0.00 0.00 34.46 4.16
803 806 3.383185 TGATTTTCACCCTGTTTGTGGTC 59.617 43.478 0.00 0.00 34.46 4.02
804 807 2.818751 TTTCACCCTGTTTGTGGTCT 57.181 45.000 0.00 0.00 34.46 3.85
805 808 3.935818 TTTCACCCTGTTTGTGGTCTA 57.064 42.857 0.00 0.00 34.46 2.59
806 809 4.447138 TTTCACCCTGTTTGTGGTCTAT 57.553 40.909 0.00 0.00 34.46 1.98
807 810 4.447138 TTCACCCTGTTTGTGGTCTATT 57.553 40.909 0.00 0.00 34.46 1.73
808 811 4.447138 TCACCCTGTTTGTGGTCTATTT 57.553 40.909 0.00 0.00 34.46 1.40
809 812 4.798882 TCACCCTGTTTGTGGTCTATTTT 58.201 39.130 0.00 0.00 34.46 1.82
810 813 5.205056 TCACCCTGTTTGTGGTCTATTTTT 58.795 37.500 0.00 0.00 34.46 1.94
856 859 8.839343 TCTTGTTGATGCATTATATACTTGTGG 58.161 33.333 0.00 0.00 0.00 4.17
857 860 7.509141 TGTTGATGCATTATATACTTGTGGG 57.491 36.000 0.00 0.00 0.00 4.61
858 861 7.286313 TGTTGATGCATTATATACTTGTGGGA 58.714 34.615 0.00 0.00 0.00 4.37
859 862 7.445096 TGTTGATGCATTATATACTTGTGGGAG 59.555 37.037 0.00 0.00 0.00 4.30
860 863 6.475504 TGATGCATTATATACTTGTGGGAGG 58.524 40.000 0.00 0.00 0.00 4.30
861 864 5.904984 TGCATTATATACTTGTGGGAGGT 57.095 39.130 0.00 0.00 0.00 3.85
862 865 6.260700 TGCATTATATACTTGTGGGAGGTT 57.739 37.500 0.00 0.00 0.00 3.50
863 866 7.381789 TGCATTATATACTTGTGGGAGGTTA 57.618 36.000 0.00 0.00 0.00 2.85
864 867 7.450074 TGCATTATATACTTGTGGGAGGTTAG 58.550 38.462 0.00 0.00 0.00 2.34
865 868 7.291416 TGCATTATATACTTGTGGGAGGTTAGA 59.709 37.037 0.00 0.00 0.00 2.10
866 869 8.322091 GCATTATATACTTGTGGGAGGTTAGAT 58.678 37.037 0.00 0.00 0.00 1.98
867 870 9.658799 CATTATATACTTGTGGGAGGTTAGATG 57.341 37.037 0.00 0.00 0.00 2.90
868 871 8.792830 TTATATACTTGTGGGAGGTTAGATGT 57.207 34.615 0.00 0.00 0.00 3.06
869 872 3.703001 ACTTGTGGGAGGTTAGATGTG 57.297 47.619 0.00 0.00 0.00 3.21
870 873 3.248024 ACTTGTGGGAGGTTAGATGTGA 58.752 45.455 0.00 0.00 0.00 3.58
871 874 3.008049 ACTTGTGGGAGGTTAGATGTGAC 59.992 47.826 0.00 0.00 0.00 3.67
872 875 2.615391 TGTGGGAGGTTAGATGTGACA 58.385 47.619 0.00 0.00 0.00 3.58
873 876 3.181329 TGTGGGAGGTTAGATGTGACAT 58.819 45.455 0.00 0.00 0.00 3.06
874 877 3.197766 TGTGGGAGGTTAGATGTGACATC 59.802 47.826 17.46 17.46 0.00 3.06
875 878 2.771943 TGGGAGGTTAGATGTGACATCC 59.228 50.000 21.05 9.65 43.91 3.51
876 879 3.041946 GGGAGGTTAGATGTGACATCCT 58.958 50.000 21.05 12.23 44.05 3.24
877 880 3.456277 GGGAGGTTAGATGTGACATCCTT 59.544 47.826 21.05 7.22 44.05 3.36
878 881 4.654262 GGGAGGTTAGATGTGACATCCTTA 59.346 45.833 21.05 6.22 44.05 2.69
879 882 5.130477 GGGAGGTTAGATGTGACATCCTTAA 59.870 44.000 21.05 11.73 44.05 1.85
880 883 6.352737 GGGAGGTTAGATGTGACATCCTTAAA 60.353 42.308 21.05 8.69 44.05 1.52
881 884 7.110155 GGAGGTTAGATGTGACATCCTTAAAA 58.890 38.462 21.05 6.42 42.00 1.52
882 885 7.610305 GGAGGTTAGATGTGACATCCTTAAAAA 59.390 37.037 21.05 4.81 42.00 1.94
883 886 8.336801 AGGTTAGATGTGACATCCTTAAAAAC 57.663 34.615 21.05 14.54 0.00 2.43
884 887 7.942341 AGGTTAGATGTGACATCCTTAAAAACA 59.058 33.333 21.05 0.00 0.00 2.83
885 888 8.739972 GGTTAGATGTGACATCCTTAAAAACAT 58.260 33.333 21.05 2.25 0.00 2.71
886 889 9.774742 GTTAGATGTGACATCCTTAAAAACATC 57.225 33.333 21.05 5.04 41.61 3.06
889 892 9.388506 AGATGTGACATCCTTAAAAACATCTAG 57.611 33.333 21.05 0.00 46.59 2.43
890 893 9.383519 GATGTGACATCCTTAAAAACATCTAGA 57.616 33.333 14.48 0.00 39.39 2.43
891 894 9.911788 ATGTGACATCCTTAAAAACATCTAGAT 57.088 29.630 0.00 0.00 0.00 1.98
892 895 9.166173 TGTGACATCCTTAAAAACATCTAGATG 57.834 33.333 27.63 27.63 44.15 2.90
949 952 0.786435 AAGGCAAACATCCCTCCCTT 59.214 50.000 0.00 0.00 0.00 3.95
1018 1021 2.716017 CGCCTCTCACCACTCTCCC 61.716 68.421 0.00 0.00 0.00 4.30
1123 1126 3.519930 GCCTCGGACGTCTCCTCC 61.520 72.222 16.46 0.00 33.79 4.30
1669 1672 0.110486 TCCAGTCCCTGCAAAAGGTC 59.890 55.000 0.00 0.00 45.78 3.85
1701 1709 0.109735 CGCTCCGCTTTTTCCCTTTC 60.110 55.000 0.00 0.00 0.00 2.62
1710 1718 3.803715 GCTTTTTCCCTTTCCAGCTTTCC 60.804 47.826 0.00 0.00 0.00 3.13
1725 1733 3.055891 AGCTTTCCTGCTCTTCTCTCTTC 60.056 47.826 0.00 0.00 39.34 2.87
1739 1748 5.862924 TCTCTCTTCCTTTAATTTGTGCG 57.137 39.130 0.00 0.00 0.00 5.34
1751 1760 7.968405 CCTTTAATTTGTGCGCTAAAATCTACT 59.032 33.333 17.35 7.89 0.00 2.57
1752 1761 8.889849 TTTAATTTGTGCGCTAAAATCTACTC 57.110 30.769 17.35 0.00 0.00 2.59
1755 1764 2.210961 GTGCGCTAAAATCTACTCCCC 58.789 52.381 9.73 0.00 0.00 4.81
1756 1765 1.140252 TGCGCTAAAATCTACTCCCCC 59.860 52.381 9.73 0.00 0.00 5.40
1758 1767 1.270147 CGCTAAAATCTACTCCCCCGG 60.270 57.143 0.00 0.00 0.00 5.73
1807 1821 5.549742 TGATGCATTCCTGGTTTTCTTTT 57.450 34.783 0.00 0.00 0.00 2.27
1808 1822 5.540911 TGATGCATTCCTGGTTTTCTTTTC 58.459 37.500 0.00 0.00 0.00 2.29
1809 1823 5.070180 TGATGCATTCCTGGTTTTCTTTTCA 59.930 36.000 0.00 0.00 0.00 2.69
1810 1824 4.692228 TGCATTCCTGGTTTTCTTTTCAC 58.308 39.130 0.00 0.00 0.00 3.18
1811 1825 4.058124 GCATTCCTGGTTTTCTTTTCACC 58.942 43.478 0.00 0.00 0.00 4.02
1822 1836 8.167392 TGGTTTTCTTTTCACCTCATTATCCTA 58.833 33.333 0.00 0.00 0.00 2.94
1823 1837 9.190317 GGTTTTCTTTTCACCTCATTATCCTAT 57.810 33.333 0.00 0.00 0.00 2.57
1827 1841 7.661968 TCTTTTCACCTCATTATCCTATCTCG 58.338 38.462 0.00 0.00 0.00 4.04
1829 1843 6.978674 TTCACCTCATTATCCTATCTCGTT 57.021 37.500 0.00 0.00 0.00 3.85
1830 1844 8.473358 TTTCACCTCATTATCCTATCTCGTTA 57.527 34.615 0.00 0.00 0.00 3.18
1831 1845 8.651589 TTCACCTCATTATCCTATCTCGTTAT 57.348 34.615 0.00 0.00 0.00 1.89
1833 1847 8.110271 TCACCTCATTATCCTATCTCGTTATCT 58.890 37.037 0.00 0.00 0.00 1.98
1834 1848 8.187480 CACCTCATTATCCTATCTCGTTATCTG 58.813 40.741 0.00 0.00 0.00 2.90
1835 1849 7.891183 ACCTCATTATCCTATCTCGTTATCTGT 59.109 37.037 0.00 0.00 0.00 3.41
1836 1850 9.397280 CCTCATTATCCTATCTCGTTATCTGTA 57.603 37.037 0.00 0.00 0.00 2.74
1842 1856 7.130303 TCCTATCTCGTTATCTGTAATGTCG 57.870 40.000 0.00 0.00 0.00 4.35
1847 1881 7.909777 TCTCGTTATCTGTAATGTCGATTTC 57.090 36.000 0.00 0.00 0.00 2.17
1874 1908 1.439679 AGTTAGCTTAAGTGCGGCAC 58.560 50.000 25.00 25.00 38.13 5.01
1880 1914 1.470979 GCTTAAGTGCGGCACTAGCTA 60.471 52.381 34.30 23.22 44.62 3.32
1881 1915 2.464865 CTTAAGTGCGGCACTAGCTAG 58.535 52.381 33.53 22.53 44.62 3.42
1883 1917 0.970937 AAGTGCGGCACTAGCTAGGA 60.971 55.000 33.53 0.00 44.62 2.94
1884 1918 1.227002 GTGCGGCACTAGCTAGGAC 60.227 63.158 25.08 15.09 41.70 3.85
1896 1931 0.238817 GCTAGGACGGACTATGAGCG 59.761 60.000 0.00 0.00 0.00 5.03
1906 1942 2.945668 GGACTATGAGCGATGCCTTTTT 59.054 45.455 0.00 0.00 0.00 1.94
1925 1961 5.356882 TTTTCTCCGTGTGCTTTATCTTG 57.643 39.130 0.00 0.00 0.00 3.02
2107 2143 0.890542 TTGTGAAGGCATTGCGCTCT 60.891 50.000 9.73 0.00 41.91 4.09
2112 2148 1.942657 GAAGGCATTGCGCTCTCATTA 59.057 47.619 9.73 0.00 41.91 1.90
2113 2149 1.590932 AGGCATTGCGCTCTCATTAG 58.409 50.000 9.73 0.00 41.91 1.73
2246 2345 4.922471 TTTAGTTTGTTAACCACCTGCC 57.078 40.909 2.48 0.00 34.71 4.85
2264 2363 4.466828 CTGCCACATCGAAAGTTGTTAAG 58.533 43.478 0.00 0.00 41.77 1.85
2265 2364 3.234386 GCCACATCGAAAGTTGTTAAGC 58.766 45.455 0.00 0.00 41.77 3.09
2308 2425 1.116308 CATCCTCATTGGCATTGGCA 58.884 50.000 9.11 9.11 43.71 4.92
2316 2433 3.968649 TCATTGGCATTGGCATCCTAAAT 59.031 39.130 14.21 0.32 43.71 1.40
2318 2435 5.601729 TCATTGGCATTGGCATCCTAAATTA 59.398 36.000 14.21 0.00 43.71 1.40
2346 2475 2.930826 AGAACACACCCCTGTACTTG 57.069 50.000 0.00 0.00 0.00 3.16
2349 2478 0.472471 ACACACCCCTGTACTTGTGG 59.528 55.000 5.63 4.29 43.04 4.17
2436 2567 7.873719 TTTTGGTGTAAGAACAAGAAGATCA 57.126 32.000 0.00 0.00 37.36 2.92
2445 2576 6.279513 AGAACAAGAAGATCAACTCGAGAT 57.720 37.500 21.68 3.75 0.00 2.75
2453 2584 3.131755 AGATCAACTCGAGATCATGTGCA 59.868 43.478 21.68 0.00 43.35 4.57
2476 2608 1.600636 CAAGTGGTCGTGCATGGGT 60.601 57.895 5.98 0.00 0.00 4.51
2510 2642 2.843912 ATTTCAGAGGGCCGGGCAAG 62.844 60.000 30.95 15.56 0.00 4.01
2640 2772 0.173481 TCTTCATCAGGGTTCGCTCG 59.827 55.000 0.00 0.00 0.00 5.03
2641 2773 0.173481 CTTCATCAGGGTTCGCTCGA 59.827 55.000 0.00 0.00 0.00 4.04
2642 2774 0.173481 TTCATCAGGGTTCGCTCGAG 59.827 55.000 8.45 8.45 0.00 4.04
2643 2775 1.227089 CATCAGGGTTCGCTCGAGG 60.227 63.158 15.58 4.50 0.00 4.63
2644 2776 2.427245 ATCAGGGTTCGCTCGAGGG 61.427 63.158 22.60 22.60 0.00 4.30
2645 2777 2.856039 ATCAGGGTTCGCTCGAGGGA 62.856 60.000 26.55 26.55 35.07 4.20
2646 2778 2.756283 AGGGTTCGCTCGAGGGAG 60.756 66.667 28.14 0.45 43.46 4.30
2666 2807 3.579151 GAGGAGAGGAGTTTAACCTGTGT 59.421 47.826 0.00 0.00 37.93 3.72
2667 2808 3.325135 AGGAGAGGAGTTTAACCTGTGTG 59.675 47.826 0.00 0.00 37.93 3.82
2668 2809 3.071167 GGAGAGGAGTTTAACCTGTGTGT 59.929 47.826 0.00 0.00 37.93 3.72
2669 2810 4.058817 GAGAGGAGTTTAACCTGTGTGTG 58.941 47.826 0.00 0.00 37.93 3.82
2670 2811 3.454812 AGAGGAGTTTAACCTGTGTGTGT 59.545 43.478 0.00 0.00 37.93 3.72
2671 2812 3.541632 AGGAGTTTAACCTGTGTGTGTG 58.458 45.455 0.00 0.00 36.30 3.82
2672 2813 2.616842 GGAGTTTAACCTGTGTGTGTGG 59.383 50.000 0.00 0.00 0.00 4.17
2673 2814 3.275999 GAGTTTAACCTGTGTGTGTGGT 58.724 45.455 0.00 0.00 35.29 4.16
2674 2815 4.444536 GAGTTTAACCTGTGTGTGTGGTA 58.555 43.478 0.00 0.00 33.17 3.25
2675 2816 5.043737 AGTTTAACCTGTGTGTGTGGTAT 57.956 39.130 0.00 0.00 33.17 2.73
2676 2817 4.819630 AGTTTAACCTGTGTGTGTGGTATG 59.180 41.667 0.00 0.00 33.17 2.39
2677 2818 4.425180 TTAACCTGTGTGTGTGGTATGT 57.575 40.909 0.00 0.00 33.17 2.29
2678 2819 2.254546 ACCTGTGTGTGTGGTATGTG 57.745 50.000 0.00 0.00 31.50 3.21
2884 3025 2.116125 GGCAGCCACTCCAAGGTT 59.884 61.111 6.55 0.00 0.00 3.50
3041 3191 1.520342 CTGGCGCTCTACTGCTTCC 60.520 63.158 7.64 0.00 0.00 3.46
3159 3316 5.714806 TGTTAGGGATTAGCTTCCTTTTTGG 59.285 40.000 4.45 0.00 35.97 3.28
3208 3365 3.268103 ATTGCACCGGTGGGTCTCC 62.268 63.158 34.58 17.82 46.01 3.71
3214 3371 0.686769 ACCGGTGGGTCTCCAGTATC 60.687 60.000 6.12 0.00 46.01 2.24
3223 3380 1.004230 CTCCAGTATCCCCACCCCA 59.996 63.158 0.00 0.00 0.00 4.96
3229 3386 0.178990 GTATCCCCACCCCATGCTTC 60.179 60.000 0.00 0.00 0.00 3.86
3239 3396 1.496429 CCCCATGCTTCTATCCTTGGT 59.504 52.381 0.00 0.00 0.00 3.67
3266 3426 3.157087 ACCCTGCTATTTTGGTGAAGTG 58.843 45.455 0.00 0.00 0.00 3.16
3349 3511 0.107410 AAAATGAGCCGCGGGTATGA 60.107 50.000 32.54 17.75 0.00 2.15
3364 3526 5.504665 GCGGGTATGATGAATCTGTTGAAAG 60.505 44.000 0.00 0.00 0.00 2.62
3376 3539 3.134081 TCTGTTGAAAGGAAGAGTCGGTT 59.866 43.478 0.00 0.00 0.00 4.44
3377 3540 3.877508 CTGTTGAAAGGAAGAGTCGGTTT 59.122 43.478 0.00 0.00 0.00 3.27
3378 3541 4.266714 TGTTGAAAGGAAGAGTCGGTTTT 58.733 39.130 0.00 0.00 0.00 2.43
3379 3542 4.095782 TGTTGAAAGGAAGAGTCGGTTTTG 59.904 41.667 0.00 0.00 0.00 2.44
3380 3543 3.211045 TGAAAGGAAGAGTCGGTTTTGG 58.789 45.455 0.00 0.00 0.00 3.28
3381 3544 3.211865 GAAAGGAAGAGTCGGTTTTGGT 58.788 45.455 0.00 0.00 0.00 3.67
3382 3545 3.292492 AAGGAAGAGTCGGTTTTGGTT 57.708 42.857 0.00 0.00 0.00 3.67
3383 3546 2.847441 AGGAAGAGTCGGTTTTGGTTC 58.153 47.619 0.00 0.00 0.00 3.62
3384 3547 2.171870 AGGAAGAGTCGGTTTTGGTTCA 59.828 45.455 0.00 0.00 0.00 3.18
3385 3548 2.548480 GGAAGAGTCGGTTTTGGTTCAG 59.452 50.000 0.00 0.00 0.00 3.02
3386 3549 3.463944 GAAGAGTCGGTTTTGGTTCAGA 58.536 45.455 0.00 0.00 0.00 3.27
3387 3550 3.553828 AGAGTCGGTTTTGGTTCAGAA 57.446 42.857 0.00 0.00 0.00 3.02
3388 3551 4.086706 AGAGTCGGTTTTGGTTCAGAAT 57.913 40.909 0.00 0.00 0.00 2.40
3389 3552 5.223449 AGAGTCGGTTTTGGTTCAGAATA 57.777 39.130 0.00 0.00 0.00 1.75
3390 3553 5.238583 AGAGTCGGTTTTGGTTCAGAATAG 58.761 41.667 0.00 0.00 0.00 1.73
3391 3554 3.751698 AGTCGGTTTTGGTTCAGAATAGC 59.248 43.478 0.00 0.00 0.00 2.97
3392 3555 3.751698 GTCGGTTTTGGTTCAGAATAGCT 59.248 43.478 0.00 0.00 0.00 3.32
3393 3556 4.215613 GTCGGTTTTGGTTCAGAATAGCTT 59.784 41.667 0.00 0.00 0.00 3.74
3394 3557 4.454504 TCGGTTTTGGTTCAGAATAGCTTC 59.545 41.667 0.00 0.00 0.00 3.86
3395 3558 4.215399 CGGTTTTGGTTCAGAATAGCTTCA 59.785 41.667 0.00 0.00 33.56 3.02
3396 3559 5.461526 GGTTTTGGTTCAGAATAGCTTCAC 58.538 41.667 0.00 0.00 33.56 3.18
3397 3560 5.009610 GGTTTTGGTTCAGAATAGCTTCACA 59.990 40.000 0.00 0.00 33.56 3.58
3398 3561 5.689383 TTTGGTTCAGAATAGCTTCACAC 57.311 39.130 0.00 0.00 33.56 3.82
3399 3562 4.350368 TGGTTCAGAATAGCTTCACACA 57.650 40.909 0.00 0.00 33.56 3.72
3400 3563 4.065088 TGGTTCAGAATAGCTTCACACAC 58.935 43.478 0.00 0.00 33.56 3.82
3401 3564 3.123621 GGTTCAGAATAGCTTCACACACG 59.876 47.826 0.00 0.00 33.56 4.49
3402 3565 3.934457 TCAGAATAGCTTCACACACGA 57.066 42.857 0.00 0.00 33.56 4.35
3403 3566 3.575630 TCAGAATAGCTTCACACACGAC 58.424 45.455 0.00 0.00 33.56 4.34
3404 3567 3.005367 TCAGAATAGCTTCACACACGACA 59.995 43.478 0.00 0.00 33.56 4.35
3405 3568 3.928992 CAGAATAGCTTCACACACGACAT 59.071 43.478 0.00 0.00 33.56 3.06
3406 3569 4.389992 CAGAATAGCTTCACACACGACATT 59.610 41.667 0.00 0.00 33.56 2.71
3407 3570 4.997395 AGAATAGCTTCACACACGACATTT 59.003 37.500 0.00 0.00 33.56 2.32
3408 3571 5.470098 AGAATAGCTTCACACACGACATTTT 59.530 36.000 0.00 0.00 33.56 1.82
3409 3572 5.689383 ATAGCTTCACACACGACATTTTT 57.311 34.783 0.00 0.00 0.00 1.94
3410 3573 3.952535 AGCTTCACACACGACATTTTTC 58.047 40.909 0.00 0.00 0.00 2.29
3411 3574 3.627577 AGCTTCACACACGACATTTTTCT 59.372 39.130 0.00 0.00 0.00 2.52
3412 3575 4.096382 AGCTTCACACACGACATTTTTCTT 59.904 37.500 0.00 0.00 0.00 2.52
3413 3576 4.204978 GCTTCACACACGACATTTTTCTTG 59.795 41.667 0.00 0.00 0.00 3.02
3414 3577 3.690422 TCACACACGACATTTTTCTTGC 58.310 40.909 0.00 0.00 0.00 4.01
3415 3578 2.788786 CACACACGACATTTTTCTTGCC 59.211 45.455 0.00 0.00 0.00 4.52
3416 3579 2.687935 ACACACGACATTTTTCTTGCCT 59.312 40.909 0.00 0.00 0.00 4.75
3417 3580 3.130340 ACACACGACATTTTTCTTGCCTT 59.870 39.130 0.00 0.00 0.00 4.35
3418 3581 4.111916 CACACGACATTTTTCTTGCCTTT 58.888 39.130 0.00 0.00 0.00 3.11
3419 3582 4.026640 CACACGACATTTTTCTTGCCTTTG 60.027 41.667 0.00 0.00 0.00 2.77
3420 3583 3.490526 CACGACATTTTTCTTGCCTTTGG 59.509 43.478 0.00 0.00 0.00 3.28
3464 3627 5.696270 GGCAACGGATTTTCTTTTGAAGAAT 59.304 36.000 4.16 0.00 46.15 2.40
3512 3684 0.966920 GTGAGGTGAAGACGAGGGAA 59.033 55.000 0.00 0.00 0.00 3.97
3515 3687 1.474879 GAGGTGAAGACGAGGGAAGAG 59.525 57.143 0.00 0.00 0.00 2.85
3676 3848 3.570212 GGTGTGGTGTCCCTGCCT 61.570 66.667 0.00 0.00 0.00 4.75
3677 3849 2.281761 GTGTGGTGTCCCTGCCTG 60.282 66.667 0.00 0.00 0.00 4.85
3678 3850 4.269523 TGTGGTGTCCCTGCCTGC 62.270 66.667 0.00 0.00 0.00 4.85
3740 3912 1.378514 TTCGATTTCCCAGCCAGCC 60.379 57.895 0.00 0.00 0.00 4.85
3741 3913 2.045045 CGATTTCCCAGCCAGCCA 60.045 61.111 0.00 0.00 0.00 4.75
3742 3914 2.117156 CGATTTCCCAGCCAGCCAG 61.117 63.158 0.00 0.00 0.00 4.85
3743 3915 2.363406 ATTTCCCAGCCAGCCAGC 60.363 61.111 0.00 0.00 0.00 4.85
3744 3916 3.970746 ATTTCCCAGCCAGCCAGCC 62.971 63.158 0.00 0.00 0.00 4.85
3784 3960 6.811954 AGATGATAACCAAACCAACGTTTTT 58.188 32.000 0.00 0.00 40.28 1.94
3785 3961 6.921307 AGATGATAACCAAACCAACGTTTTTC 59.079 34.615 0.00 0.00 40.28 2.29
3806 3982 8.915871 TTTTCTTTCTTTCTCAGTGTCATTTG 57.084 30.769 0.00 0.00 0.00 2.32
3807 3983 7.630242 TTCTTTCTTTCTCAGTGTCATTTGT 57.370 32.000 0.00 0.00 0.00 2.83
3865 4046 6.828785 AGATTTATCGGAAATACAAAGCACCT 59.171 34.615 0.00 0.00 0.00 4.00
3941 4122 4.020378 GCAAAAACGAGCCGCCGA 62.020 61.111 8.04 0.00 0.00 5.54
3942 4123 2.867472 CAAAAACGAGCCGCCGAT 59.133 55.556 8.04 0.00 0.00 4.18
3953 4134 4.147322 CGCCGATGCACCGTTGTC 62.147 66.667 0.00 0.00 37.32 3.18
3957 4138 4.147322 GATGCACCGTTGTCGCCG 62.147 66.667 0.00 0.00 35.54 6.46
3966 4147 0.247145 CGTTGTCGCCGCTTTCATAC 60.247 55.000 0.00 0.00 0.00 2.39
3969 4150 0.245266 TGTCGCCGCTTTCATACTGA 59.755 50.000 0.00 0.00 0.00 3.41
3973 4154 0.378610 GCCGCTTTCATACTGAAGCC 59.621 55.000 2.85 0.00 37.70 4.35
3976 4157 1.739067 GCTTTCATACTGAAGCCGGT 58.261 50.000 1.90 0.00 37.70 5.28
3980 4161 1.847328 TCATACTGAAGCCGGTCTGA 58.153 50.000 1.90 0.00 33.88 3.27
3985 4166 0.035458 CTGAAGCCGGTCTGACCTTT 59.965 55.000 23.49 14.83 35.66 3.11
3987 4168 1.133915 TGAAGCCGGTCTGACCTTTTT 60.134 47.619 23.49 14.18 35.66 1.94
3988 4169 2.105134 TGAAGCCGGTCTGACCTTTTTA 59.895 45.455 23.49 9.55 35.66 1.52
4070 5717 1.450531 CCAATCTCAGGGCCGCAATC 61.451 60.000 0.00 0.00 0.00 2.67
4075 5722 1.651240 CTCAGGGCCGCAATCAACTG 61.651 60.000 0.00 0.00 0.00 3.16
4163 5810 2.421388 GGTATCTGCCACCAGTGCATTA 60.421 50.000 0.00 0.00 40.09 1.90
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 4.729868 AGGGGGAATTGTAATGTCATAGC 58.270 43.478 0.00 0.00 0.00 2.97
1 2 7.561356 AGAAAAGGGGGAATTGTAATGTCATAG 59.439 37.037 0.00 0.00 0.00 2.23
2 3 7.418378 AGAAAAGGGGGAATTGTAATGTCATA 58.582 34.615 0.00 0.00 0.00 2.15
3 4 6.263754 AGAAAAGGGGGAATTGTAATGTCAT 58.736 36.000 0.00 0.00 0.00 3.06
33 34 5.983720 TCTCTCAACGGTTTAAAGACTCTTG 59.016 40.000 0.00 0.00 0.00 3.02
67 68 8.045507 TCTCTTGACTAGTCGGAGTCTAATTTA 58.954 37.037 28.75 14.97 45.21 1.40
95 96 4.572571 TGGAAGGCGGCCAAACGT 62.573 61.111 23.09 0.00 35.98 3.99
112 114 8.906238 TTGTATTTTACTCTACTCCCTAGGTT 57.094 34.615 8.29 0.00 0.00 3.50
168 170 9.057089 CCCTCTGTAAAAGAAATACCACATATC 57.943 37.037 0.00 0.00 33.37 1.63
172 174 6.043938 ACTCCCTCTGTAAAAGAAATACCACA 59.956 38.462 0.00 0.00 33.37 4.17
173 175 6.473758 ACTCCCTCTGTAAAAGAAATACCAC 58.526 40.000 0.00 0.00 33.37 4.16
174 176 6.697641 ACTCCCTCTGTAAAAGAAATACCA 57.302 37.500 0.00 0.00 33.37 3.25
176 178 7.125356 TCCCTACTCCCTCTGTAAAAGAAATAC 59.875 40.741 0.00 0.00 33.37 1.89
177 179 7.194050 TCCCTACTCCCTCTGTAAAAGAAATA 58.806 38.462 0.00 0.00 33.37 1.40
178 180 6.030082 TCCCTACTCCCTCTGTAAAAGAAAT 58.970 40.000 0.00 0.00 33.37 2.17
181 183 4.045590 ACTCCCTACTCCCTCTGTAAAAGA 59.954 45.833 0.00 0.00 0.00 2.52
182 184 4.354662 ACTCCCTACTCCCTCTGTAAAAG 58.645 47.826 0.00 0.00 0.00 2.27
183 185 4.415224 ACTCCCTACTCCCTCTGTAAAA 57.585 45.455 0.00 0.00 0.00 1.52
203 205 7.042389 GCTCTTGTGCATTTTCCTATACTCTAC 60.042 40.741 0.00 0.00 0.00 2.59
204 206 6.986817 GCTCTTGTGCATTTTCCTATACTCTA 59.013 38.462 0.00 0.00 0.00 2.43
205 207 5.819901 GCTCTTGTGCATTTTCCTATACTCT 59.180 40.000 0.00 0.00 0.00 3.24
206 208 5.586243 TGCTCTTGTGCATTTTCCTATACTC 59.414 40.000 0.00 0.00 38.12 2.59
207 209 5.355350 GTGCTCTTGTGCATTTTCCTATACT 59.645 40.000 0.00 0.00 45.23 2.12
208 210 5.449177 GGTGCTCTTGTGCATTTTCCTATAC 60.449 44.000 0.00 0.00 45.23 1.47
209 211 4.640201 GGTGCTCTTGTGCATTTTCCTATA 59.360 41.667 0.00 0.00 45.23 1.31
210 212 3.445096 GGTGCTCTTGTGCATTTTCCTAT 59.555 43.478 0.00 0.00 45.23 2.57
211 213 2.819608 GGTGCTCTTGTGCATTTTCCTA 59.180 45.455 0.00 0.00 45.23 2.94
212 214 1.615392 GGTGCTCTTGTGCATTTTCCT 59.385 47.619 0.00 0.00 45.23 3.36
213 215 1.615392 AGGTGCTCTTGTGCATTTTCC 59.385 47.619 0.00 0.00 45.23 3.13
214 216 2.608752 CCAGGTGCTCTTGTGCATTTTC 60.609 50.000 0.00 0.00 45.23 2.29
215 217 1.342174 CCAGGTGCTCTTGTGCATTTT 59.658 47.619 0.00 0.00 45.23 1.82
216 218 0.963962 CCAGGTGCTCTTGTGCATTT 59.036 50.000 0.00 0.00 45.23 2.32
217 219 0.896940 CCCAGGTGCTCTTGTGCATT 60.897 55.000 0.00 0.00 45.23 3.56
218 220 1.303888 CCCAGGTGCTCTTGTGCAT 60.304 57.895 0.00 0.00 45.23 3.96
219 221 2.113774 CCCAGGTGCTCTTGTGCA 59.886 61.111 0.00 0.00 41.05 4.57
220 222 2.113986 ACCCAGGTGCTCTTGTGC 59.886 61.111 0.00 0.00 0.00 4.57
221 223 4.069869 CACCCAGGTGCTCTTGTG 57.930 61.111 3.41 0.00 39.39 3.33
236 238 1.729586 TCATATAGGGGGTGGAGCAC 58.270 55.000 0.00 0.00 0.00 4.40
237 239 2.505672 TTCATATAGGGGGTGGAGCA 57.494 50.000 0.00 0.00 0.00 4.26
238 240 3.200165 GGTATTCATATAGGGGGTGGAGC 59.800 52.174 0.00 0.00 0.00 4.70
239 241 4.435137 TGGTATTCATATAGGGGGTGGAG 58.565 47.826 0.00 0.00 0.00 3.86
240 242 4.511963 TGGTATTCATATAGGGGGTGGA 57.488 45.455 0.00 0.00 0.00 4.02
241 243 5.592587 TTTGGTATTCATATAGGGGGTGG 57.407 43.478 0.00 0.00 0.00 4.61
242 244 7.237982 TGAATTTGGTATTCATATAGGGGGTG 58.762 38.462 0.00 0.00 33.55 4.61
243 245 7.415004 TGAATTTGGTATTCATATAGGGGGT 57.585 36.000 0.00 0.00 33.55 4.95
244 246 8.719645 TTTGAATTTGGTATTCATATAGGGGG 57.280 34.615 1.45 0.00 37.79 5.40
290 292 9.705103 TTTGATATCCCAAGATCTCAGATTTTT 57.295 29.630 0.00 0.00 37.05 1.94
291 293 9.129532 GTTTGATATCCCAAGATCTCAGATTTT 57.870 33.333 0.00 0.00 37.05 1.82
292 294 7.723172 GGTTTGATATCCCAAGATCTCAGATTT 59.277 37.037 0.00 0.00 37.05 2.17
293 295 7.073470 AGGTTTGATATCCCAAGATCTCAGATT 59.927 37.037 0.00 0.00 37.05 2.40
294 296 6.561838 AGGTTTGATATCCCAAGATCTCAGAT 59.438 38.462 0.00 1.52 37.05 2.90
295 297 5.907662 AGGTTTGATATCCCAAGATCTCAGA 59.092 40.000 0.00 0.00 37.05 3.27
296 298 6.185114 AGGTTTGATATCCCAAGATCTCAG 57.815 41.667 0.00 0.00 37.05 3.35
297 299 6.270927 CCTAGGTTTGATATCCCAAGATCTCA 59.729 42.308 0.00 0.00 34.71 3.27
298 300 6.498651 TCCTAGGTTTGATATCCCAAGATCTC 59.501 42.308 9.08 0.00 33.67 2.75
299 301 6.393897 TCCTAGGTTTGATATCCCAAGATCT 58.606 40.000 9.08 0.00 33.67 2.75
300 302 6.688073 TCCTAGGTTTGATATCCCAAGATC 57.312 41.667 9.08 0.00 33.67 2.75
301 303 5.013599 GCTCCTAGGTTTGATATCCCAAGAT 59.986 44.000 9.08 0.00 36.44 2.40
302 304 4.348168 GCTCCTAGGTTTGATATCCCAAGA 59.652 45.833 9.08 0.00 0.00 3.02
303 305 4.349342 AGCTCCTAGGTTTGATATCCCAAG 59.651 45.833 9.08 0.00 0.00 3.61
304 306 4.307259 AGCTCCTAGGTTTGATATCCCAA 58.693 43.478 9.08 0.00 0.00 4.12
305 307 3.904339 GAGCTCCTAGGTTTGATATCCCA 59.096 47.826 9.08 0.00 0.00 4.37
306 308 3.904339 TGAGCTCCTAGGTTTGATATCCC 59.096 47.826 12.15 0.00 0.00 3.85
307 309 5.552870 TTGAGCTCCTAGGTTTGATATCC 57.447 43.478 12.15 0.00 0.00 2.59
308 310 8.994170 GTAAATTGAGCTCCTAGGTTTGATATC 58.006 37.037 12.15 0.00 0.00 1.63
309 311 8.718656 AGTAAATTGAGCTCCTAGGTTTGATAT 58.281 33.333 12.15 0.00 0.00 1.63
310 312 8.090788 AGTAAATTGAGCTCCTAGGTTTGATA 57.909 34.615 12.15 0.00 0.00 2.15
311 313 6.963322 AGTAAATTGAGCTCCTAGGTTTGAT 58.037 36.000 12.15 0.00 0.00 2.57
312 314 6.374417 AGTAAATTGAGCTCCTAGGTTTGA 57.626 37.500 12.15 0.00 0.00 2.69
313 315 5.586643 GGAGTAAATTGAGCTCCTAGGTTTG 59.413 44.000 12.15 1.80 43.93 2.93
314 316 5.746284 GGAGTAAATTGAGCTCCTAGGTTT 58.254 41.667 12.15 7.55 43.93 3.27
315 317 5.360649 GGAGTAAATTGAGCTCCTAGGTT 57.639 43.478 12.15 1.04 43.93 3.50
321 323 3.944087 ACACAGGAGTAAATTGAGCTCC 58.056 45.455 12.15 12.65 46.75 4.70
322 324 6.651225 ACTTTACACAGGAGTAAATTGAGCTC 59.349 38.462 6.82 6.82 41.57 4.09
323 325 6.534634 ACTTTACACAGGAGTAAATTGAGCT 58.465 36.000 0.00 0.00 41.57 4.09
324 326 6.803154 ACTTTACACAGGAGTAAATTGAGC 57.197 37.500 3.19 0.00 41.57 4.26
325 327 8.009974 CGAAACTTTACACAGGAGTAAATTGAG 58.990 37.037 3.19 0.00 41.57 3.02
326 328 7.496591 ACGAAACTTTACACAGGAGTAAATTGA 59.503 33.333 0.00 0.00 41.57 2.57
327 329 7.586300 CACGAAACTTTACACAGGAGTAAATTG 59.414 37.037 0.00 0.00 41.57 2.32
328 330 7.496591 TCACGAAACTTTACACAGGAGTAAATT 59.503 33.333 0.00 0.00 41.57 1.82
329 331 6.987992 TCACGAAACTTTACACAGGAGTAAAT 59.012 34.615 0.00 0.00 41.57 1.40
330 332 6.339730 TCACGAAACTTTACACAGGAGTAAA 58.660 36.000 0.00 0.00 40.56 2.01
331 333 5.904941 TCACGAAACTTTACACAGGAGTAA 58.095 37.500 0.00 0.00 32.46 2.24
332 334 5.518848 TCACGAAACTTTACACAGGAGTA 57.481 39.130 0.00 0.00 0.00 2.59
333 335 4.395959 TCACGAAACTTTACACAGGAGT 57.604 40.909 0.00 0.00 0.00 3.85
334 336 5.728351 TTTCACGAAACTTTACACAGGAG 57.272 39.130 0.00 0.00 0.00 3.69
335 337 6.497785 TTTTTCACGAAACTTTACACAGGA 57.502 33.333 0.00 0.00 0.00 3.86
371 373 8.827677 GGACTGTATTTAGTTTGTCATGGATAC 58.172 37.037 0.00 0.00 0.00 2.24
372 374 8.544622 TGGACTGTATTTAGTTTGTCATGGATA 58.455 33.333 0.00 0.00 0.00 2.59
373 375 7.402054 TGGACTGTATTTAGTTTGTCATGGAT 58.598 34.615 0.00 0.00 0.00 3.41
374 376 6.774673 TGGACTGTATTTAGTTTGTCATGGA 58.225 36.000 0.00 0.00 0.00 3.41
375 377 6.403636 GCTGGACTGTATTTAGTTTGTCATGG 60.404 42.308 0.00 0.00 0.00 3.66
376 378 6.403636 GGCTGGACTGTATTTAGTTTGTCATG 60.404 42.308 0.00 0.00 0.00 3.07
377 379 5.648092 GGCTGGACTGTATTTAGTTTGTCAT 59.352 40.000 0.00 0.00 0.00 3.06
378 380 5.001232 GGCTGGACTGTATTTAGTTTGTCA 58.999 41.667 0.00 0.00 0.00 3.58
379 381 5.246307 AGGCTGGACTGTATTTAGTTTGTC 58.754 41.667 0.00 0.00 0.00 3.18
380 382 5.242795 AGGCTGGACTGTATTTAGTTTGT 57.757 39.130 0.00 0.00 0.00 2.83
381 383 7.047891 TCATAGGCTGGACTGTATTTAGTTTG 58.952 38.462 0.00 0.00 0.00 2.93
382 384 7.195374 TCATAGGCTGGACTGTATTTAGTTT 57.805 36.000 0.00 0.00 0.00 2.66
383 385 6.808321 TCATAGGCTGGACTGTATTTAGTT 57.192 37.500 0.00 0.00 0.00 2.24
384 386 6.014156 GGATCATAGGCTGGACTGTATTTAGT 60.014 42.308 0.00 0.00 0.00 2.24
385 387 6.014242 TGGATCATAGGCTGGACTGTATTTAG 60.014 42.308 0.00 0.00 0.00 1.85
386 388 5.843969 TGGATCATAGGCTGGACTGTATTTA 59.156 40.000 0.00 0.00 0.00 1.40
387 389 4.660303 TGGATCATAGGCTGGACTGTATTT 59.340 41.667 0.00 0.00 0.00 1.40
388 390 4.234550 TGGATCATAGGCTGGACTGTATT 58.765 43.478 0.00 0.00 0.00 1.89
389 391 3.861846 TGGATCATAGGCTGGACTGTAT 58.138 45.455 0.00 0.00 0.00 2.29
390 392 3.328535 TGGATCATAGGCTGGACTGTA 57.671 47.619 0.00 0.00 0.00 2.74
391 393 2.171448 GTTGGATCATAGGCTGGACTGT 59.829 50.000 0.00 0.00 0.00 3.55
392 394 2.437281 AGTTGGATCATAGGCTGGACTG 59.563 50.000 0.00 0.00 0.00 3.51
393 395 2.769209 AGTTGGATCATAGGCTGGACT 58.231 47.619 0.00 0.00 0.00 3.85
394 396 4.689612 TTAGTTGGATCATAGGCTGGAC 57.310 45.455 0.00 0.00 0.00 4.02
395 397 5.912149 ATTTAGTTGGATCATAGGCTGGA 57.088 39.130 0.00 0.00 0.00 3.86
396 398 6.773638 ACTATTTAGTTGGATCATAGGCTGG 58.226 40.000 0.00 0.00 31.13 4.85
397 399 8.682936 AAACTATTTAGTTGGATCATAGGCTG 57.317 34.615 0.00 0.00 45.17 4.85
398 400 9.700831 AAAAACTATTTAGTTGGATCATAGGCT 57.299 29.630 3.84 0.00 45.17 4.58
399 401 9.736023 CAAAAACTATTTAGTTGGATCATAGGC 57.264 33.333 3.84 0.00 45.17 3.93
440 442 4.699637 TGCTCTCGGTAAAGAGACAAAAA 58.300 39.130 5.13 0.00 44.67 1.94
441 443 4.330944 TGCTCTCGGTAAAGAGACAAAA 57.669 40.909 5.13 0.00 44.67 2.44
442 444 4.021456 TGATGCTCTCGGTAAAGAGACAAA 60.021 41.667 5.13 0.00 44.67 2.83
443 445 3.509967 TGATGCTCTCGGTAAAGAGACAA 59.490 43.478 5.13 0.00 44.67 3.18
444 446 3.089284 TGATGCTCTCGGTAAAGAGACA 58.911 45.455 5.13 3.46 44.67 3.41
445 447 3.440228 GTGATGCTCTCGGTAAAGAGAC 58.560 50.000 5.13 0.00 44.67 3.36
446 448 2.097629 CGTGATGCTCTCGGTAAAGAGA 59.902 50.000 5.13 0.00 44.67 3.10
447 449 2.097629 TCGTGATGCTCTCGGTAAAGAG 59.902 50.000 7.45 0.00 44.69 2.85
448 450 2.089201 TCGTGATGCTCTCGGTAAAGA 58.911 47.619 7.45 0.00 34.54 2.52
449 451 2.561733 TCGTGATGCTCTCGGTAAAG 57.438 50.000 7.45 0.00 34.54 1.85
450 452 3.186909 CATTCGTGATGCTCTCGGTAAA 58.813 45.455 7.45 0.00 34.54 2.01
451 453 2.165641 ACATTCGTGATGCTCTCGGTAA 59.834 45.455 7.45 0.00 39.47 2.85
452 454 1.749063 ACATTCGTGATGCTCTCGGTA 59.251 47.619 7.45 0.00 39.47 4.02
453 455 0.532573 ACATTCGTGATGCTCTCGGT 59.467 50.000 7.45 0.00 39.47 4.69
454 456 1.645034 AACATTCGTGATGCTCTCGG 58.355 50.000 7.45 0.00 39.47 4.63
455 457 5.395325 AAATAACATTCGTGATGCTCTCG 57.605 39.130 2.24 0.00 39.47 4.04
477 479 1.594862 CCGTGCAAATTTCCGCAAAAA 59.405 42.857 4.89 0.00 40.44 1.94
478 480 1.202417 TCCGTGCAAATTTCCGCAAAA 60.202 42.857 4.89 0.00 40.44 2.44
479 481 0.385751 TCCGTGCAAATTTCCGCAAA 59.614 45.000 4.89 0.00 40.44 3.68
480 482 0.385751 TTCCGTGCAAATTTCCGCAA 59.614 45.000 4.89 0.00 40.44 4.85
481 483 0.039617 CTTCCGTGCAAATTTCCGCA 60.040 50.000 0.00 0.00 35.30 5.69
482 484 0.039527 ACTTCCGTGCAAATTTCCGC 60.040 50.000 0.00 0.00 0.00 5.54
483 485 2.739913 TCTACTTCCGTGCAAATTTCCG 59.260 45.455 0.00 0.00 0.00 4.30
484 486 4.965119 ATCTACTTCCGTGCAAATTTCC 57.035 40.909 0.00 0.00 0.00 3.13
485 487 5.095490 CCAATCTACTTCCGTGCAAATTTC 58.905 41.667 0.00 0.00 0.00 2.17
486 488 4.082245 CCCAATCTACTTCCGTGCAAATTT 60.082 41.667 0.00 0.00 0.00 1.82
487 489 3.443681 CCCAATCTACTTCCGTGCAAATT 59.556 43.478 0.00 0.00 0.00 1.82
488 490 3.016736 CCCAATCTACTTCCGTGCAAAT 58.983 45.455 0.00 0.00 0.00 2.32
489 491 2.432444 CCCAATCTACTTCCGTGCAAA 58.568 47.619 0.00 0.00 0.00 3.68
490 492 1.948611 GCCCAATCTACTTCCGTGCAA 60.949 52.381 0.00 0.00 0.00 4.08
491 493 0.392461 GCCCAATCTACTTCCGTGCA 60.392 55.000 0.00 0.00 0.00 4.57
492 494 0.392461 TGCCCAATCTACTTCCGTGC 60.392 55.000 0.00 0.00 0.00 5.34
493 495 1.369625 GTGCCCAATCTACTTCCGTG 58.630 55.000 0.00 0.00 0.00 4.94
494 496 0.252197 GGTGCCCAATCTACTTCCGT 59.748 55.000 0.00 0.00 0.00 4.69
495 497 0.463833 GGGTGCCCAATCTACTTCCG 60.464 60.000 1.66 0.00 35.81 4.30
496 498 0.623723 TGGGTGCCCAATCTACTTCC 59.376 55.000 7.63 0.00 44.12 3.46
506 508 0.916086 ATATCGAACTTGGGTGCCCA 59.084 50.000 5.73 5.73 45.63 5.36
507 509 1.594331 GATATCGAACTTGGGTGCCC 58.406 55.000 0.00 0.00 0.00 5.36
508 510 1.594331 GGATATCGAACTTGGGTGCC 58.406 55.000 0.00 0.00 0.00 5.01
509 511 1.134220 TGGGATATCGAACTTGGGTGC 60.134 52.381 0.00 0.00 0.00 5.01
510 512 3.275617 TTGGGATATCGAACTTGGGTG 57.724 47.619 0.00 0.00 0.00 4.61
511 513 4.310022 TTTTGGGATATCGAACTTGGGT 57.690 40.909 0.00 0.00 0.00 4.51
512 514 4.278419 GGATTTTGGGATATCGAACTTGGG 59.722 45.833 0.00 0.00 0.00 4.12
513 515 4.887071 TGGATTTTGGGATATCGAACTTGG 59.113 41.667 0.00 0.00 0.00 3.61
514 516 6.318648 TCTTGGATTTTGGGATATCGAACTTG 59.681 38.462 0.00 0.00 0.00 3.16
515 517 6.423182 TCTTGGATTTTGGGATATCGAACTT 58.577 36.000 0.00 0.00 0.00 2.66
516 518 6.001449 TCTTGGATTTTGGGATATCGAACT 57.999 37.500 0.00 0.00 0.00 3.01
517 519 6.884280 ATCTTGGATTTTGGGATATCGAAC 57.116 37.500 0.00 0.00 0.00 3.95
518 520 9.586732 AAATATCTTGGATTTTGGGATATCGAA 57.413 29.630 0.00 0.00 31.68 3.71
519 521 9.586732 AAAATATCTTGGATTTTGGGATATCGA 57.413 29.630 0.00 0.00 35.64 3.59
564 566 7.386299 CCCCATGTGAACATTAAATTCGAAAAA 59.614 33.333 0.00 0.00 33.61 1.94
565 567 6.870965 CCCCATGTGAACATTAAATTCGAAAA 59.129 34.615 0.00 0.00 33.61 2.29
566 568 6.393990 CCCCATGTGAACATTAAATTCGAAA 58.606 36.000 0.00 0.00 33.61 3.46
567 569 5.105554 CCCCCATGTGAACATTAAATTCGAA 60.106 40.000 0.00 0.00 33.61 3.71
568 570 4.400884 CCCCCATGTGAACATTAAATTCGA 59.599 41.667 0.00 0.00 33.61 3.71
569 571 4.159506 ACCCCCATGTGAACATTAAATTCG 59.840 41.667 0.00 0.00 33.61 3.34
570 572 5.418676 CACCCCCATGTGAACATTAAATTC 58.581 41.667 0.00 0.00 38.55 2.17
571 573 4.323409 GCACCCCCATGTGAACATTAAATT 60.323 41.667 0.00 0.00 38.55 1.82
572 574 3.197549 GCACCCCCATGTGAACATTAAAT 59.802 43.478 0.00 0.00 38.55 1.40
573 575 2.564947 GCACCCCCATGTGAACATTAAA 59.435 45.455 0.00 0.00 38.55 1.52
574 576 2.175202 GCACCCCCATGTGAACATTAA 58.825 47.619 0.00 0.00 38.55 1.40
575 577 1.076187 TGCACCCCCATGTGAACATTA 59.924 47.619 0.00 0.00 38.55 1.90
576 578 0.178938 TGCACCCCCATGTGAACATT 60.179 50.000 0.00 0.00 38.55 2.71
577 579 0.612732 CTGCACCCCCATGTGAACAT 60.613 55.000 0.00 0.00 38.55 2.71
578 580 1.228521 CTGCACCCCCATGTGAACA 60.229 57.895 0.00 0.00 38.55 3.18
579 581 2.639327 GCTGCACCCCCATGTGAAC 61.639 63.158 0.00 0.00 38.55 3.18
580 582 2.283101 GCTGCACCCCCATGTGAA 60.283 61.111 0.00 0.00 38.55 3.18
581 583 3.578286 TGCTGCACCCCCATGTGA 61.578 61.111 0.00 0.00 38.55 3.58
582 584 3.376078 GTGCTGCACCCCCATGTG 61.376 66.667 21.78 0.00 39.29 3.21
591 593 3.368571 GGCTCTTGGGTGCTGCAC 61.369 66.667 24.02 24.02 33.10 4.57
592 594 2.925416 TTTGGCTCTTGGGTGCTGCA 62.925 55.000 0.00 0.00 33.10 4.41
593 595 1.747325 TTTTGGCTCTTGGGTGCTGC 61.747 55.000 0.00 0.00 33.10 5.25
594 596 0.752054 TTTTTGGCTCTTGGGTGCTG 59.248 50.000 0.00 0.00 33.10 4.41
595 597 1.720781 ATTTTTGGCTCTTGGGTGCT 58.279 45.000 0.00 0.00 33.10 4.40
596 598 2.416747 GAATTTTTGGCTCTTGGGTGC 58.583 47.619 0.00 0.00 0.00 5.01
597 599 2.676076 CGAATTTTTGGCTCTTGGGTG 58.324 47.619 0.00 0.00 0.00 4.61
598 600 1.000843 GCGAATTTTTGGCTCTTGGGT 59.999 47.619 0.00 0.00 0.00 4.51
599 601 1.713597 GCGAATTTTTGGCTCTTGGG 58.286 50.000 0.00 0.00 0.00 4.12
600 602 1.335872 ACGCGAATTTTTGGCTCTTGG 60.336 47.619 15.93 0.00 31.68 3.61
601 603 1.978782 GACGCGAATTTTTGGCTCTTG 59.021 47.619 15.93 0.00 31.68 3.02
602 604 1.068541 GGACGCGAATTTTTGGCTCTT 60.069 47.619 15.93 0.00 31.68 2.85
603 605 0.521735 GGACGCGAATTTTTGGCTCT 59.478 50.000 15.93 0.00 31.68 4.09
604 606 0.793104 CGGACGCGAATTTTTGGCTC 60.793 55.000 15.93 0.00 31.68 4.70
605 607 1.209127 CGGACGCGAATTTTTGGCT 59.791 52.632 15.93 0.00 31.68 4.75
606 608 0.166379 TACGGACGCGAATTTTTGGC 59.834 50.000 15.93 0.00 0.00 4.52
607 609 1.727880 TCTACGGACGCGAATTTTTGG 59.272 47.619 15.93 0.00 0.00 3.28
608 610 2.410730 ACTCTACGGACGCGAATTTTTG 59.589 45.455 15.93 0.00 0.00 2.44
609 611 2.680577 ACTCTACGGACGCGAATTTTT 58.319 42.857 15.93 0.00 0.00 1.94
610 612 2.358939 ACTCTACGGACGCGAATTTT 57.641 45.000 15.93 0.00 0.00 1.82
611 613 2.679837 TCTACTCTACGGACGCGAATTT 59.320 45.455 15.93 0.00 0.00 1.82
612 614 2.031437 GTCTACTCTACGGACGCGAATT 59.969 50.000 15.93 0.00 0.00 2.17
613 615 1.596727 GTCTACTCTACGGACGCGAAT 59.403 52.381 15.93 0.00 0.00 3.34
614 616 1.002366 GTCTACTCTACGGACGCGAA 58.998 55.000 15.93 0.00 0.00 4.70
615 617 0.174389 AGTCTACTCTACGGACGCGA 59.826 55.000 15.93 0.00 35.42 5.87
616 618 0.576328 GAGTCTACTCTACGGACGCG 59.424 60.000 3.53 3.53 39.81 6.01
617 619 0.576328 CGAGTCTACTCTACGGACGC 59.424 60.000 8.41 0.00 40.75 5.19
618 620 0.576328 GCGAGTCTACTCTACGGACG 59.424 60.000 8.41 0.00 40.75 4.79
619 621 1.860326 GAGCGAGTCTACTCTACGGAC 59.140 57.143 8.41 0.00 40.75 4.79
620 622 1.202510 GGAGCGAGTCTACTCTACGGA 60.203 57.143 8.41 0.00 40.75 4.69
621 623 1.219646 GGAGCGAGTCTACTCTACGG 58.780 60.000 8.41 0.00 40.75 4.02
622 624 1.862201 CTGGAGCGAGTCTACTCTACG 59.138 57.143 8.41 0.00 40.75 3.51
756 759 9.317936 CAGCTTAGATGTGACTTAATTATGTCA 57.682 33.333 23.31 23.31 40.39 3.58
757 760 9.534565 TCAGCTTAGATGTGACTTAATTATGTC 57.465 33.333 19.58 19.58 0.00 3.06
763 766 9.453572 TGAAAATCAGCTTAGATGTGACTTAAT 57.546 29.630 0.00 0.00 0.00 1.40
764 767 8.721478 GTGAAAATCAGCTTAGATGTGACTTAA 58.279 33.333 0.00 0.00 0.00 1.85
765 768 7.334421 GGTGAAAATCAGCTTAGATGTGACTTA 59.666 37.037 0.00 0.00 41.34 2.24
766 769 6.150140 GGTGAAAATCAGCTTAGATGTGACTT 59.850 38.462 0.00 0.00 41.34 3.01
767 770 5.645497 GGTGAAAATCAGCTTAGATGTGACT 59.355 40.000 0.00 0.00 41.34 3.41
768 771 5.163713 GGGTGAAAATCAGCTTAGATGTGAC 60.164 44.000 9.16 0.00 43.82 3.67
769 772 4.943705 GGGTGAAAATCAGCTTAGATGTGA 59.056 41.667 9.16 0.00 43.82 3.58
770 773 4.946157 AGGGTGAAAATCAGCTTAGATGTG 59.054 41.667 9.16 0.00 43.82 3.21
771 774 4.946157 CAGGGTGAAAATCAGCTTAGATGT 59.054 41.667 9.16 0.00 43.82 3.06
772 775 4.946157 ACAGGGTGAAAATCAGCTTAGATG 59.054 41.667 9.16 0.00 43.82 2.90
773 776 5.184892 ACAGGGTGAAAATCAGCTTAGAT 57.815 39.130 9.16 0.00 43.82 1.98
774 777 4.640771 ACAGGGTGAAAATCAGCTTAGA 57.359 40.909 9.16 0.00 43.82 2.10
775 778 5.010012 ACAAACAGGGTGAAAATCAGCTTAG 59.990 40.000 9.16 3.18 43.82 2.18
776 779 4.892934 ACAAACAGGGTGAAAATCAGCTTA 59.107 37.500 9.16 0.00 43.82 3.09
777 780 3.706086 ACAAACAGGGTGAAAATCAGCTT 59.294 39.130 9.16 0.00 43.82 3.74
778 781 3.068590 CACAAACAGGGTGAAAATCAGCT 59.931 43.478 9.16 0.00 43.82 4.24
779 782 3.383761 CACAAACAGGGTGAAAATCAGC 58.616 45.455 1.06 1.06 43.63 4.26
780 783 3.384467 ACCACAAACAGGGTGAAAATCAG 59.616 43.478 0.00 0.00 38.54 2.90
781 784 3.370104 ACCACAAACAGGGTGAAAATCA 58.630 40.909 0.00 0.00 38.54 2.57
782 785 3.636764 AGACCACAAACAGGGTGAAAATC 59.363 43.478 0.00 0.00 37.57 2.17
783 786 3.642141 AGACCACAAACAGGGTGAAAAT 58.358 40.909 0.00 0.00 37.57 1.82
784 787 3.094484 AGACCACAAACAGGGTGAAAA 57.906 42.857 0.00 0.00 37.57 2.29
785 788 2.818751 AGACCACAAACAGGGTGAAA 57.181 45.000 0.00 0.00 37.57 2.69
786 789 4.447138 AATAGACCACAAACAGGGTGAA 57.553 40.909 0.00 0.00 37.57 3.18
787 790 4.447138 AAATAGACCACAAACAGGGTGA 57.553 40.909 0.00 0.00 37.57 4.02
788 791 5.529581 AAAAATAGACCACAAACAGGGTG 57.470 39.130 0.00 0.00 37.57 4.61
830 833 8.839343 CCACAAGTATATAATGCATCAACAAGA 58.161 33.333 0.00 0.00 0.00 3.02
831 834 8.077991 CCCACAAGTATATAATGCATCAACAAG 58.922 37.037 0.00 0.00 0.00 3.16
832 835 7.777440 TCCCACAAGTATATAATGCATCAACAA 59.223 33.333 0.00 0.00 0.00 2.83
833 836 7.286313 TCCCACAAGTATATAATGCATCAACA 58.714 34.615 0.00 0.00 0.00 3.33
834 837 7.094634 CCTCCCACAAGTATATAATGCATCAAC 60.095 40.741 0.00 0.00 0.00 3.18
835 838 6.942005 CCTCCCACAAGTATATAATGCATCAA 59.058 38.462 0.00 0.00 0.00 2.57
836 839 6.044287 ACCTCCCACAAGTATATAATGCATCA 59.956 38.462 0.00 0.00 0.00 3.07
837 840 6.476378 ACCTCCCACAAGTATATAATGCATC 58.524 40.000 0.00 0.00 0.00 3.91
838 841 6.454223 ACCTCCCACAAGTATATAATGCAT 57.546 37.500 0.00 0.00 0.00 3.96
839 842 5.904984 ACCTCCCACAAGTATATAATGCA 57.095 39.130 0.00 0.00 0.00 3.96
840 843 7.676947 TCTAACCTCCCACAAGTATATAATGC 58.323 38.462 0.00 0.00 0.00 3.56
841 844 9.658799 CATCTAACCTCCCACAAGTATATAATG 57.341 37.037 0.00 0.00 0.00 1.90
842 845 9.393786 ACATCTAACCTCCCACAAGTATATAAT 57.606 33.333 0.00 0.00 0.00 1.28
843 846 8.647796 CACATCTAACCTCCCACAAGTATATAA 58.352 37.037 0.00 0.00 0.00 0.98
844 847 8.008332 TCACATCTAACCTCCCACAAGTATATA 58.992 37.037 0.00 0.00 0.00 0.86
845 848 6.844388 TCACATCTAACCTCCCACAAGTATAT 59.156 38.462 0.00 0.00 0.00 0.86
846 849 6.097839 GTCACATCTAACCTCCCACAAGTATA 59.902 42.308 0.00 0.00 0.00 1.47
847 850 5.030147 TCACATCTAACCTCCCACAAGTAT 58.970 41.667 0.00 0.00 0.00 2.12
848 851 4.222145 GTCACATCTAACCTCCCACAAGTA 59.778 45.833 0.00 0.00 0.00 2.24
849 852 3.008049 GTCACATCTAACCTCCCACAAGT 59.992 47.826 0.00 0.00 0.00 3.16
850 853 3.007940 TGTCACATCTAACCTCCCACAAG 59.992 47.826 0.00 0.00 0.00 3.16
851 854 2.976185 TGTCACATCTAACCTCCCACAA 59.024 45.455 0.00 0.00 0.00 3.33
852 855 2.615391 TGTCACATCTAACCTCCCACA 58.385 47.619 0.00 0.00 0.00 4.17
853 856 3.432326 GGATGTCACATCTAACCTCCCAC 60.432 52.174 17.46 0.00 0.00 4.61
854 857 2.771943 GGATGTCACATCTAACCTCCCA 59.228 50.000 17.46 0.00 0.00 4.37
855 858 3.041946 AGGATGTCACATCTAACCTCCC 58.958 50.000 17.46 0.00 32.42 4.30
856 859 4.762289 AAGGATGTCACATCTAACCTCC 57.238 45.455 17.46 0.18 32.24 4.30
857 860 8.451748 GTTTTTAAGGATGTCACATCTAACCTC 58.548 37.037 17.46 0.00 0.00 3.85
858 861 7.942341 TGTTTTTAAGGATGTCACATCTAACCT 59.058 33.333 17.46 3.80 0.00 3.50
859 862 8.106247 TGTTTTTAAGGATGTCACATCTAACC 57.894 34.615 17.46 1.26 0.00 2.85
860 863 9.774742 GATGTTTTTAAGGATGTCACATCTAAC 57.225 33.333 17.46 11.71 37.26 2.34
861 864 9.739276 AGATGTTTTTAAGGATGTCACATCTAA 57.261 29.630 17.46 6.57 44.74 2.10
863 866 9.388506 CTAGATGTTTTTAAGGATGTCACATCT 57.611 33.333 17.46 14.48 46.91 2.90
864 867 9.383519 TCTAGATGTTTTTAAGGATGTCACATC 57.616 33.333 9.53 9.53 39.46 3.06
865 868 9.911788 ATCTAGATGTTTTTAAGGATGTCACAT 57.088 29.630 3.89 0.00 0.00 3.21
866 869 9.166173 CATCTAGATGTTTTTAAGGATGTCACA 57.834 33.333 22.42 0.00 34.23 3.58
949 952 5.279809 GGTTTTATACAGGCGATATCCAGGA 60.280 44.000 0.00 0.00 0.00 3.86
1477 1480 2.730672 GCAGATCACCGTGTCGCAC 61.731 63.158 0.00 0.58 0.00 5.34
1594 1597 1.066286 CAGCTCTTCTCCAGGTCCTTG 60.066 57.143 0.00 0.00 0.00 3.61
1669 1672 1.080995 CGGAGCGAAGAAAGGAGCTG 61.081 60.000 0.00 0.00 40.39 4.24
1701 1709 1.278699 AGAGAAGAGCAGGAAAGCTGG 59.721 52.381 0.00 0.00 46.75 4.85
1710 1718 7.390162 ACAAATTAAAGGAAGAGAGAAGAGCAG 59.610 37.037 0.00 0.00 0.00 4.24
1725 1733 7.968405 AGTAGATTTTAGCGCACAAATTAAAGG 59.032 33.333 11.47 0.00 0.00 3.11
1739 1748 2.037381 CTCCGGGGGAGTAGATTTTAGC 59.963 54.545 0.00 0.00 44.25 3.09
1751 1760 1.002069 TGAAGTACTACTCCGGGGGA 58.998 55.000 6.13 0.00 0.00 4.81
1752 1761 1.755380 CTTGAAGTACTACTCCGGGGG 59.245 57.143 6.13 0.00 0.00 5.40
1755 1764 2.454538 ACCCTTGAAGTACTACTCCGG 58.545 52.381 0.00 0.00 0.00 5.14
1756 1765 3.508793 TGAACCCTTGAAGTACTACTCCG 59.491 47.826 0.00 0.00 0.00 4.63
1758 1767 6.282199 TGATGAACCCTTGAAGTACTACTC 57.718 41.667 0.00 0.00 0.00 2.59
1763 1772 5.705441 TCAACATGATGAACCCTTGAAGTAC 59.295 40.000 2.74 0.00 0.00 2.73
1764 1773 5.875224 TCAACATGATGAACCCTTGAAGTA 58.125 37.500 2.74 0.00 0.00 2.24
1765 1774 4.728772 TCAACATGATGAACCCTTGAAGT 58.271 39.130 2.74 0.00 0.00 3.01
1794 1808 5.535753 AATGAGGTGAAAAGAAAACCAGG 57.464 39.130 0.00 0.00 36.37 4.45
1807 1821 8.110271 AGATAACGAGATAGGATAATGAGGTGA 58.890 37.037 0.00 0.00 0.00 4.02
1808 1822 8.187480 CAGATAACGAGATAGGATAATGAGGTG 58.813 40.741 0.00 0.00 0.00 4.00
1809 1823 7.891183 ACAGATAACGAGATAGGATAATGAGGT 59.109 37.037 0.00 0.00 0.00 3.85
1810 1824 8.287439 ACAGATAACGAGATAGGATAATGAGG 57.713 38.462 0.00 0.00 0.00 3.86
1822 1836 8.135529 TGAAATCGACATTACAGATAACGAGAT 58.864 33.333 0.00 0.00 0.00 2.75
1823 1837 7.477494 TGAAATCGACATTACAGATAACGAGA 58.523 34.615 0.00 0.00 0.00 4.04
1824 1838 7.679659 TGAAATCGACATTACAGATAACGAG 57.320 36.000 0.00 0.00 0.00 4.18
1825 1839 8.642908 ATTGAAATCGACATTACAGATAACGA 57.357 30.769 0.00 0.00 0.00 3.85
1836 1850 9.601217 AGCTAACTACTAATTGAAATCGACATT 57.399 29.630 0.00 0.00 0.00 2.71
1837 1851 9.601217 AAGCTAACTACTAATTGAAATCGACAT 57.399 29.630 0.00 0.00 0.00 3.06
1838 1852 8.997621 AAGCTAACTACTAATTGAAATCGACA 57.002 30.769 0.00 0.00 0.00 4.35
1847 1881 6.509677 GCCGCACTTAAGCTAACTACTAATTG 60.510 42.308 1.29 0.00 0.00 2.32
1855 1889 1.002087 AGTGCCGCACTTAAGCTAACT 59.998 47.619 20.59 0.00 42.59 2.24
1874 1908 2.745281 GCTCATAGTCCGTCCTAGCTAG 59.255 54.545 14.20 14.20 0.00 3.42
1880 1914 0.955178 CATCGCTCATAGTCCGTCCT 59.045 55.000 0.00 0.00 0.00 3.85
1881 1915 0.664767 GCATCGCTCATAGTCCGTCC 60.665 60.000 0.00 0.00 0.00 4.79
1883 1917 1.109920 AGGCATCGCTCATAGTCCGT 61.110 55.000 0.00 0.00 0.00 4.69
1884 1918 0.032678 AAGGCATCGCTCATAGTCCG 59.967 55.000 0.00 0.00 0.00 4.79
1896 1931 1.401539 GCACACGGAGAAAAAGGCATC 60.402 52.381 0.00 0.00 0.00 3.91
1906 1942 3.678056 ACAAGATAAAGCACACGGAGA 57.322 42.857 0.00 0.00 0.00 3.71
1925 1961 3.064134 GGGCTCTTTCTGCTCGATAAAAC 59.936 47.826 0.00 0.00 0.00 2.43
2246 2345 5.510671 ACAAGCTTAACAACTTTCGATGTG 58.489 37.500 0.00 0.00 0.00 3.21
2264 2363 4.279659 CGACAAACAAGTTAAGGACAAGC 58.720 43.478 0.00 0.00 0.00 4.01
2265 2364 4.279659 GCGACAAACAAGTTAAGGACAAG 58.720 43.478 0.00 0.00 0.00 3.16
2308 2425 9.349713 TGTGTTCTTCACTGTTTAATTTAGGAT 57.650 29.630 0.00 0.00 46.27 3.24
2316 2433 3.949113 GGGGTGTGTTCTTCACTGTTTAA 59.051 43.478 0.00 0.00 46.27 1.52
2318 2435 2.025321 AGGGGTGTGTTCTTCACTGTTT 60.025 45.455 0.00 0.00 46.27 2.83
2346 2475 4.054780 TGAACTGTCAGTACAAGACCAC 57.945 45.455 5.77 5.65 34.49 4.16
2349 2478 7.426929 AATTCATGAACTGTCAGTACAAGAC 57.573 36.000 11.07 10.53 37.14 3.01
2436 2567 3.531934 TCATGCACATGATCTCGAGTT 57.468 42.857 13.13 3.51 42.42 3.01
2453 2584 2.011947 CATGCACGACCACTTGATCAT 58.988 47.619 0.00 0.00 0.00 2.45
2476 2608 7.000472 CCCTCTGAAATCCTCAATAAATGCTA 59.000 38.462 0.00 0.00 32.17 3.49
2640 2772 2.767394 GGTTAAACTCCTCTCCTCCCTC 59.233 54.545 0.00 0.00 0.00 4.30
2641 2773 2.387510 AGGTTAAACTCCTCTCCTCCCT 59.612 50.000 0.00 0.00 0.00 4.20
2642 2774 2.502130 CAGGTTAAACTCCTCTCCTCCC 59.498 54.545 0.00 0.00 32.37 4.30
2643 2775 3.055747 CACAGGTTAAACTCCTCTCCTCC 60.056 52.174 0.00 0.00 32.37 4.30
2644 2776 3.579151 ACACAGGTTAAACTCCTCTCCTC 59.421 47.826 0.00 0.00 32.37 3.71
2645 2777 3.325135 CACACAGGTTAAACTCCTCTCCT 59.675 47.826 0.00 0.00 32.37 3.69
2646 2778 3.071167 ACACACAGGTTAAACTCCTCTCC 59.929 47.826 0.00 0.00 32.37 3.71
2666 2807 2.629336 TCACAAGCACATACCACACA 57.371 45.000 0.00 0.00 0.00 3.72
2667 2808 3.073678 TGATCACAAGCACATACCACAC 58.926 45.455 0.00 0.00 0.00 3.82
2668 2809 3.337358 CTGATCACAAGCACATACCACA 58.663 45.455 0.00 0.00 0.00 4.17
2669 2810 2.679837 CCTGATCACAAGCACATACCAC 59.320 50.000 0.00 0.00 0.00 4.16
2670 2811 2.305635 ACCTGATCACAAGCACATACCA 59.694 45.455 0.00 0.00 0.00 3.25
2671 2812 2.679837 CACCTGATCACAAGCACATACC 59.320 50.000 0.00 0.00 0.00 2.73
2672 2813 3.599343 TCACCTGATCACAAGCACATAC 58.401 45.455 0.00 0.00 0.00 2.39
2673 2814 3.979101 TCACCTGATCACAAGCACATA 57.021 42.857 0.00 0.00 0.00 2.29
2674 2815 2.865119 TCACCTGATCACAAGCACAT 57.135 45.000 0.00 0.00 0.00 3.21
2675 2816 2.497138 CTTCACCTGATCACAAGCACA 58.503 47.619 0.00 0.00 0.00 4.57
2676 2817 1.808945 CCTTCACCTGATCACAAGCAC 59.191 52.381 0.00 0.00 0.00 4.40
2677 2818 1.271543 CCCTTCACCTGATCACAAGCA 60.272 52.381 0.00 0.00 0.00 3.91
2678 2819 1.457346 CCCTTCACCTGATCACAAGC 58.543 55.000 0.00 0.00 0.00 4.01
3022 3172 2.125350 AAGCAGTAGAGCGCCAGC 60.125 61.111 2.29 0.00 45.58 4.85
3041 3191 0.242825 TACAAGAACGCGTCCCAGAG 59.757 55.000 14.44 3.33 0.00 3.35
3208 3365 1.151450 GCATGGGGTGGGGATACTG 59.849 63.158 0.00 0.00 0.00 2.74
3214 3371 0.111253 GATAGAAGCATGGGGTGGGG 59.889 60.000 0.00 0.00 0.00 4.96
3239 3396 7.672239 ACTTCACCAAAATAGCAGGGTAATAAA 59.328 33.333 0.00 0.00 31.05 1.40
3254 3411 3.876341 AGTTACGACCACTTCACCAAAA 58.124 40.909 0.00 0.00 0.00 2.44
3255 3412 3.547054 AGTTACGACCACTTCACCAAA 57.453 42.857 0.00 0.00 0.00 3.28
3266 3426 1.193874 CGGCTTGAACAAGTTACGACC 59.806 52.381 14.62 6.52 40.45 4.79
3349 3511 5.641209 CGACTCTTCCTTTCAACAGATTCAT 59.359 40.000 0.00 0.00 0.00 2.57
3364 3526 2.548480 CTGAACCAAAACCGACTCTTCC 59.452 50.000 0.00 0.00 0.00 3.46
3376 3539 5.008613 GTGTGTGAAGCTATTCTGAACCAAA 59.991 40.000 0.00 0.00 36.33 3.28
3377 3540 4.515191 GTGTGTGAAGCTATTCTGAACCAA 59.485 41.667 0.00 0.00 36.33 3.67
3378 3541 4.065088 GTGTGTGAAGCTATTCTGAACCA 58.935 43.478 0.00 0.00 36.33 3.67
3379 3542 3.123621 CGTGTGTGAAGCTATTCTGAACC 59.876 47.826 0.00 0.00 36.33 3.62
3380 3543 3.987868 TCGTGTGTGAAGCTATTCTGAAC 59.012 43.478 0.00 0.00 36.33 3.18
3381 3544 3.987868 GTCGTGTGTGAAGCTATTCTGAA 59.012 43.478 0.00 0.00 36.33 3.02
3382 3545 3.005367 TGTCGTGTGTGAAGCTATTCTGA 59.995 43.478 0.00 0.00 36.33 3.27
3383 3546 3.317150 TGTCGTGTGTGAAGCTATTCTG 58.683 45.455 0.00 0.00 36.33 3.02
3384 3547 3.660501 TGTCGTGTGTGAAGCTATTCT 57.339 42.857 0.00 0.00 36.33 2.40
3385 3548 4.928661 AATGTCGTGTGTGAAGCTATTC 57.071 40.909 0.00 0.00 35.87 1.75
3386 3549 5.689383 AAAATGTCGTGTGTGAAGCTATT 57.311 34.783 0.00 0.00 0.00 1.73
3387 3550 5.470098 AGAAAAATGTCGTGTGTGAAGCTAT 59.530 36.000 0.00 0.00 0.00 2.97
3388 3551 4.814234 AGAAAAATGTCGTGTGTGAAGCTA 59.186 37.500 0.00 0.00 0.00 3.32
3389 3552 3.627577 AGAAAAATGTCGTGTGTGAAGCT 59.372 39.130 0.00 0.00 0.00 3.74
3390 3553 3.952535 AGAAAAATGTCGTGTGTGAAGC 58.047 40.909 0.00 0.00 0.00 3.86
3391 3554 4.204978 GCAAGAAAAATGTCGTGTGTGAAG 59.795 41.667 0.00 0.00 30.65 3.02
3392 3555 4.101942 GCAAGAAAAATGTCGTGTGTGAA 58.898 39.130 0.00 0.00 30.65 3.18
3393 3556 3.488384 GGCAAGAAAAATGTCGTGTGTGA 60.488 43.478 0.00 0.00 30.65 3.58
3394 3557 2.788786 GGCAAGAAAAATGTCGTGTGTG 59.211 45.455 0.00 0.00 30.65 3.82
3395 3558 2.687935 AGGCAAGAAAAATGTCGTGTGT 59.312 40.909 0.00 0.00 30.65 3.72
3396 3559 3.354089 AGGCAAGAAAAATGTCGTGTG 57.646 42.857 0.00 0.00 30.65 3.82
3397 3560 4.111916 CAAAGGCAAGAAAAATGTCGTGT 58.888 39.130 0.00 0.00 30.65 4.49
3398 3561 3.490526 CCAAAGGCAAGAAAAATGTCGTG 59.509 43.478 0.00 0.00 0.00 4.35
3399 3562 3.716601 CCAAAGGCAAGAAAAATGTCGT 58.283 40.909 0.00 0.00 0.00 4.34
3413 3576 2.677573 AAAACTGTCGCGCCAAAGGC 62.678 55.000 0.00 0.00 46.75 4.35
3414 3577 0.934436 CAAAACTGTCGCGCCAAAGG 60.934 55.000 0.00 0.00 0.00 3.11
3415 3578 0.934436 CCAAAACTGTCGCGCCAAAG 60.934 55.000 0.00 0.00 0.00 2.77
3416 3579 1.064946 CCAAAACTGTCGCGCCAAA 59.935 52.632 0.00 0.00 0.00 3.28
3417 3580 1.658686 AACCAAAACTGTCGCGCCAA 61.659 50.000 0.00 0.00 0.00 4.52
3418 3581 1.658686 AAACCAAAACTGTCGCGCCA 61.659 50.000 0.00 0.00 0.00 5.69
3419 3582 1.065109 AAACCAAAACTGTCGCGCC 59.935 52.632 0.00 0.00 0.00 6.53
3420 3583 0.524604 ACAAACCAAAACTGTCGCGC 60.525 50.000 0.00 0.00 0.00 6.86
3421 3584 1.187715 CACAAACCAAAACTGTCGCG 58.812 50.000 0.00 0.00 0.00 5.87
3422 3585 1.555477 CCACAAACCAAAACTGTCGC 58.445 50.000 0.00 0.00 0.00 5.19
3423 3586 1.135257 TGCCACAAACCAAAACTGTCG 60.135 47.619 0.00 0.00 0.00 4.35
3424 3587 2.663826 TGCCACAAACCAAAACTGTC 57.336 45.000 0.00 0.00 0.00 3.51
3425 3588 2.694213 GTTGCCACAAACCAAAACTGT 58.306 42.857 0.00 0.00 0.00 3.55
3426 3589 1.658095 CGTTGCCACAAACCAAAACTG 59.342 47.619 0.00 0.00 0.00 3.16
3427 3590 1.404851 CCGTTGCCACAAACCAAAACT 60.405 47.619 0.00 0.00 0.00 2.66
3428 3591 1.003108 CCGTTGCCACAAACCAAAAC 58.997 50.000 0.00 0.00 0.00 2.43
3464 3627 2.688666 CCTGCCACCCTGCCTCTA 60.689 66.667 0.00 0.00 0.00 2.43
3485 3654 1.002868 CTTCACCTCACCTGCCCTG 60.003 63.158 0.00 0.00 0.00 4.45
3512 3684 3.336568 TCCCCCTCGTCGTCCTCT 61.337 66.667 0.00 0.00 0.00 3.69
3515 3687 4.755507 ACCTCCCCCTCGTCGTCC 62.756 72.222 0.00 0.00 0.00 4.79
3743 3915 2.600173 TTTTCTTGGGCCGCTGGG 60.600 61.111 0.00 0.00 0.00 4.45
3744 3916 0.967380 ATCTTTTCTTGGGCCGCTGG 60.967 55.000 0.00 0.00 0.00 4.85
3784 3960 7.630242 AACAAATGACACTGAGAAAGAAAGA 57.370 32.000 0.00 0.00 0.00 2.52
3785 3961 8.693542 AAAACAAATGACACTGAGAAAGAAAG 57.306 30.769 0.00 0.00 0.00 2.62
3844 4025 5.492895 TGAGGTGCTTTGTATTTCCGATAA 58.507 37.500 0.00 0.00 0.00 1.75
3845 4026 5.092554 TGAGGTGCTTTGTATTTCCGATA 57.907 39.130 0.00 0.00 0.00 2.92
3847 4028 3.410631 TGAGGTGCTTTGTATTTCCGA 57.589 42.857 0.00 0.00 0.00 4.55
3850 4031 8.986477 ATTATGTTTGAGGTGCTTTGTATTTC 57.014 30.769 0.00 0.00 0.00 2.17
3890 4071 1.271597 GCTCAGTTGTCCATGGACCTT 60.272 52.381 36.27 21.46 43.97 3.50
3920 4101 2.496794 CGGCTCGTTTTTGCGACG 60.497 61.111 0.00 0.00 41.62 5.12
3922 4103 4.020378 GGCGGCTCGTTTTTGCGA 62.020 61.111 0.00 0.00 39.22 5.10
3925 4106 1.511887 CATCGGCGGCTCGTTTTTG 60.512 57.895 7.21 0.00 0.00 2.44
3945 4126 3.343421 GAAAGCGGCGACAACGGT 61.343 61.111 12.98 0.00 44.68 4.83
3966 4147 0.035458 AAAGGTCAGACCGGCTTCAG 59.965 55.000 14.32 0.00 44.90 3.02
3969 4150 2.943036 TAAAAAGGTCAGACCGGCTT 57.057 45.000 14.32 10.50 44.90 4.35
3973 4154 4.378459 GCTGTCATTAAAAAGGTCAGACCG 60.378 45.833 14.32 0.00 44.90 4.79
3976 4157 3.751175 CGGCTGTCATTAAAAAGGTCAGA 59.249 43.478 3.42 0.00 0.00 3.27
3980 4161 2.871453 ACCGGCTGTCATTAAAAAGGT 58.129 42.857 0.00 0.00 0.00 3.50
3985 4166 2.811431 CACTGAACCGGCTGTCATTAAA 59.189 45.455 0.00 0.00 0.00 1.52
3987 4168 1.338674 CCACTGAACCGGCTGTCATTA 60.339 52.381 0.00 0.00 0.00 1.90
3988 4169 0.606401 CCACTGAACCGGCTGTCATT 60.606 55.000 0.00 0.00 0.00 2.57
4019 4200 1.903877 AAGGCTCCATGGTCACCTCG 61.904 60.000 18.97 0.00 0.00 4.63
4020 4201 0.329596 AAAGGCTCCATGGTCACCTC 59.670 55.000 18.97 3.63 0.00 3.85
4021 4202 0.779997 AAAAGGCTCCATGGTCACCT 59.220 50.000 12.58 13.87 0.00 4.00
4022 4203 2.507407 TAAAAGGCTCCATGGTCACC 57.493 50.000 12.58 11.73 0.00 4.02
4024 4205 4.934356 AGAAATAAAAGGCTCCATGGTCA 58.066 39.130 12.58 0.00 0.00 4.02
4025 4206 4.339530 GGAGAAATAAAAGGCTCCATGGTC 59.660 45.833 12.58 4.90 44.91 4.02
4026 4207 4.281657 GGAGAAATAAAAGGCTCCATGGT 58.718 43.478 12.58 0.00 44.91 3.55
4027 4208 4.926140 GGAGAAATAAAAGGCTCCATGG 57.074 45.455 4.97 4.97 44.91 3.66
4070 5717 5.533154 TGTATTTCAGGGTTTGTACCAGTTG 59.467 40.000 0.00 0.00 46.96 3.16
4075 5722 6.127730 CCAGATTGTATTTCAGGGTTTGTACC 60.128 42.308 0.00 0.00 44.22 3.34
4127 5774 1.047034 ATACCGTGGGGCTGAGGTAC 61.047 60.000 0.00 0.00 41.41 3.34


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.