Multiple sequence alignment - TraesCS2A01G206100

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS2A01G206100 chr2A 100.000 6514 0 0 1 6514 185119273 185125786 0.000000e+00 12030.0
1 TraesCS2A01G206100 chr2A 99.474 190 1 0 3868 4057 47763566 47763755 4.830000e-91 346.0
2 TraesCS2A01G206100 chr2A 93.750 64 1 1 3810 3870 54253784 54253721 6.950000e-15 93.5
3 TraesCS2A01G206100 chr2A 100.000 30 0 0 4419 4448 185123444 185123473 1.000000e-03 56.5
4 TraesCS2A01G206100 chr2A 100.000 30 0 0 4172 4201 185123691 185123720 1.000000e-03 56.5
5 TraesCS2A01G206100 chr2D 95.868 2396 58 14 1435 3813 165546135 165543764 0.000000e+00 3838.0
6 TraesCS2A01G206100 chr2D 92.575 1468 58 18 4539 5974 165543257 165541809 0.000000e+00 2060.0
7 TraesCS2A01G206100 chr2D 90.274 1388 97 16 48 1432 165547601 165546249 0.000000e+00 1781.0
8 TraesCS2A01G206100 chr2D 96.117 515 17 3 6003 6514 165541746 165541232 0.000000e+00 837.0
9 TraesCS2A01G206100 chr2D 96.247 373 12 1 4172 4542 165543767 165543395 1.550000e-170 610.0
10 TraesCS2A01G206100 chr2D 86.992 123 5 7 4058 4178 551005044 551005157 1.910000e-25 128.0
11 TraesCS2A01G206100 chr2D 86.290 124 6 7 4057 4178 214933817 214933931 2.470000e-24 124.0
12 TraesCS2A01G206100 chr2D 96.296 54 2 0 3802 3855 315109659 315109606 9.000000e-14 89.8
13 TraesCS2A01G206100 chr2D 97.143 35 1 0 4414 4448 165543772 165543738 7.050000e-05 60.2
14 TraesCS2A01G206100 chr2B 94.449 2396 83 20 4153 6514 231970339 231972718 0.000000e+00 3642.0
15 TraesCS2A01G206100 chr2B 93.947 2412 88 20 1435 3830 231967847 231970216 0.000000e+00 3592.0
16 TraesCS2A01G206100 chr2B 88.807 1215 78 31 231 1432 231966564 231967733 0.000000e+00 1437.0
17 TraesCS2A01G206100 chr2B 95.522 134 4 1 3866 3999 188021286 188021417 5.120000e-51 213.0
18 TraesCS2A01G206100 chr2B 90.909 66 1 5 3810 3870 699281439 699281374 4.190000e-12 84.2
19 TraesCS2A01G206100 chr2B 86.765 68 7 2 3810 3877 158382382 158382447 2.520000e-09 75.0
20 TraesCS2A01G206100 chr2B 100.000 30 0 0 4419 4448 231970358 231970387 1.000000e-03 56.5
21 TraesCS2A01G206100 chr2B 100.000 30 0 0 4172 4201 231970607 231970636 1.000000e-03 56.5
22 TraesCS2A01G206100 chr7B 100.000 186 0 0 3871 4056 245176054 245176239 1.740000e-90 344.0
23 TraesCS2A01G206100 chr7B 84.286 70 7 4 3810 3877 60827055 60826988 1.520000e-06 65.8
24 TraesCS2A01G206100 chr7B 100.000 29 0 0 4478 4506 332173232 332173260 3.000000e-03 54.7
25 TraesCS2A01G206100 chr4A 100.000 186 0 0 3871 4056 245258106 245257921 1.740000e-90 344.0
26 TraesCS2A01G206100 chr4A 90.909 66 5 1 3791 3855 615436902 615436837 3.240000e-13 87.9
27 TraesCS2A01G206100 chr3B 100.000 186 0 0 3871 4056 780293884 780293699 1.740000e-90 344.0
28 TraesCS2A01G206100 chr3B 97.516 161 4 0 3871 4031 81167744 81167584 6.430000e-70 276.0
29 TraesCS2A01G206100 chr3B 90.164 122 4 6 4057 4174 229819796 229819913 1.130000e-32 152.0
30 TraesCS2A01G206100 chr3B 89.147 129 4 6 4057 4180 318661120 318661243 1.130000e-32 152.0
31 TraesCS2A01G206100 chr3B 93.651 63 4 0 3867 3929 193616816 193616878 1.930000e-15 95.3
32 TraesCS2A01G206100 chr3B 95.000 60 2 1 3796 3855 436284243 436284301 6.950000e-15 93.5
33 TraesCS2A01G206100 chr3B 93.333 60 2 2 3796 3855 257342178 257342235 3.240000e-13 87.9
34 TraesCS2A01G206100 chr3B 88.889 63 2 4 3813 3870 822985968 822985906 9.060000e-09 73.1
35 TraesCS2A01G206100 chr5B 100.000 185 0 0 3875 4059 372109030 372108846 6.250000e-90 342.0
36 TraesCS2A01G206100 chr5B 99.465 187 1 0 3871 4057 694170744 694170558 2.250000e-89 340.0
37 TraesCS2A01G206100 chr5B 96.237 186 7 0 3871 4056 498284916 498284731 8.210000e-79 305.0
38 TraesCS2A01G206100 chr1B 99.468 188 1 0 3871 4058 388768925 388769112 6.250000e-90 342.0
39 TraesCS2A01G206100 chr1B 93.651 63 4 0 3867 3929 143631244 143631182 1.930000e-15 95.3
40 TraesCS2A01G206100 chr1B 89.855 69 5 2 3788 3855 612866280 612866213 3.240000e-13 87.9
41 TraesCS2A01G206100 chr6B 99.465 187 1 0 3870 4056 560191511 560191697 2.250000e-89 340.0
42 TraesCS2A01G206100 chr4B 99.465 187 1 0 3871 4057 291852216 291852402 2.250000e-89 340.0
43 TraesCS2A01G206100 chr4B 93.158 190 6 3 3868 4056 514058184 514058367 8.320000e-69 272.0
44 TraesCS2A01G206100 chrUn 96.471 170 5 1 3863 4031 55739412 55739243 4.970000e-71 279.0
45 TraesCS2A01G206100 chr7D 87.097 124 5 7 4057 4178 67910200 67910314 5.300000e-26 130.0
46 TraesCS2A01G206100 chr7D 87.097 124 5 7 4057 4178 535267855 535267741 5.300000e-26 130.0
47 TraesCS2A01G206100 chr5D 87.097 124 5 7 4057 4178 318353451 318353565 5.300000e-26 130.0
48 TraesCS2A01G206100 chr5D 86.290 124 6 7 4057 4178 377038562 377038676 2.470000e-24 124.0
49 TraesCS2A01G206100 chr4D 86.179 123 8 6 4057 4178 89281428 89281542 2.470000e-24 124.0
50 TraesCS2A01G206100 chr5A 94.915 59 3 0 3871 3929 524328318 524328260 6.950000e-15 93.5
51 TraesCS2A01G206100 chr7A 93.103 58 4 0 3798 3855 629780129 629780072 1.160000e-12 86.1
52 TraesCS2A01G206100 chr7A 96.875 32 1 0 4481 4512 201391251 201391282 3.000000e-03 54.7
53 TraesCS2A01G206100 chr3D 94.643 56 2 1 3796 3851 322016691 322016745 1.160000e-12 86.1
54 TraesCS2A01G206100 chr1D 86.957 69 5 3 3810 3877 413583534 413583599 2.520000e-09 75.0
55 TraesCS2A01G206100 chr6D 100.000 28 0 0 4481 4508 277944931 277944958 1.200000e-02 52.8
56 TraesCS2A01G206100 chr1A 96.774 31 1 0 4481 4511 122809934 122809904 1.200000e-02 52.8
57 TraesCS2A01G206100 chr1A 100.000 28 0 0 4481 4508 207168830 207168857 1.200000e-02 52.8
58 TraesCS2A01G206100 chr1A 96.774 31 1 0 4481 4511 316298498 316298468 1.200000e-02 52.8
59 TraesCS2A01G206100 chr1A 96.774 31 1 0 4481 4511 359521356 359521326 1.200000e-02 52.8


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS2A01G206100 chr2A 185119273 185125786 6513 False 4047.666667 12030 100.0000 1 6514 3 chr2A.!!$F2 6513
1 TraesCS2A01G206100 chr2D 165541232 165547601 6369 True 1531.033333 3838 94.7040 48 6514 6 chr2D.!!$R2 6466
2 TraesCS2A01G206100 chr2B 231966564 231972718 6154 False 1756.800000 3642 95.4406 231 6514 5 chr2B.!!$F3 6283

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
73 74 1.002033 ACGTGACGTCCACTCAACTAC 60.002 52.381 14.12 0.0 43.53 2.73 F
900 911 1.134371 ACGAGCAATAGCCTTTCCTCC 60.134 52.381 0.00 0.0 43.56 4.30 F
2337 2475 1.073284 GGGTCAACTGTTGGAAGGCTA 59.927 52.381 19.55 0.0 0.00 3.93 F
2393 2531 0.183492 ACTTTCTTGCTGCTGGGACA 59.817 50.000 0.00 0.0 0.00 4.02 F
3874 4019 0.037590 TCCCTCCGTTCCAAACATGG 59.962 55.000 0.00 0.0 0.00 3.66 F
3875 4020 0.037590 CCCTCCGTTCCAAACATGGA 59.962 55.000 0.00 0.0 35.93 3.41 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1432 1444 0.746563 TTGGTATAAGGCGTGCTGGC 60.747 55.000 0.00 0.00 45.27 4.85 R
2393 2531 3.191162 TCGTAGTTGCTACACGTTACCAT 59.809 43.478 17.13 0.00 36.83 3.55 R
3855 4000 0.037590 CCATGTTTGGAACGGAGGGA 59.962 55.000 0.00 0.00 46.92 4.20 R
3976 4121 0.038159 AGCCTGCGTTGTGACTAGTC 60.038 55.000 16.32 16.32 0.00 2.59 R
4740 5030 1.832883 AGACACACCAACAAGCAACA 58.167 45.000 0.00 0.00 0.00 3.33 R
5569 5861 2.515926 TCTCAACGCTATCCAGATGC 57.484 50.000 0.00 0.00 0.00 3.91 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
22 23 4.175787 AGCCTGAGTAACTAGTTTGTCG 57.824 45.455 14.49 7.39 0.00 4.35
23 24 2.666994 GCCTGAGTAACTAGTTTGTCGC 59.333 50.000 14.49 7.13 0.00 5.19
24 25 3.614390 GCCTGAGTAACTAGTTTGTCGCT 60.614 47.826 14.49 4.92 0.00 4.93
25 26 4.167268 CCTGAGTAACTAGTTTGTCGCTC 58.833 47.826 14.49 13.25 0.00 5.03
26 27 4.082679 CCTGAGTAACTAGTTTGTCGCTCT 60.083 45.833 14.49 1.91 0.00 4.09
27 28 5.449107 TGAGTAACTAGTTTGTCGCTCTT 57.551 39.130 14.49 0.00 0.00 2.85
28 29 5.220381 TGAGTAACTAGTTTGTCGCTCTTG 58.780 41.667 14.49 0.00 0.00 3.02
29 30 5.197682 AGTAACTAGTTTGTCGCTCTTGT 57.802 39.130 14.49 0.00 0.00 3.16
30 31 4.982916 AGTAACTAGTTTGTCGCTCTTGTG 59.017 41.667 14.49 0.00 0.00 3.33
31 32 3.454371 ACTAGTTTGTCGCTCTTGTGT 57.546 42.857 0.00 0.00 0.00 3.72
32 33 3.793559 ACTAGTTTGTCGCTCTTGTGTT 58.206 40.909 0.00 0.00 0.00 3.32
33 34 3.802685 ACTAGTTTGTCGCTCTTGTGTTC 59.197 43.478 0.00 0.00 0.00 3.18
34 35 2.906354 AGTTTGTCGCTCTTGTGTTCT 58.094 42.857 0.00 0.00 0.00 3.01
35 36 4.054780 AGTTTGTCGCTCTTGTGTTCTA 57.945 40.909 0.00 0.00 0.00 2.10
36 37 4.439057 AGTTTGTCGCTCTTGTGTTCTAA 58.561 39.130 0.00 0.00 0.00 2.10
37 38 4.873827 AGTTTGTCGCTCTTGTGTTCTAAA 59.126 37.500 0.00 0.00 0.00 1.85
38 39 5.527582 AGTTTGTCGCTCTTGTGTTCTAAAT 59.472 36.000 0.00 0.00 0.00 1.40
39 40 5.591643 TTGTCGCTCTTGTGTTCTAAATC 57.408 39.130 0.00 0.00 0.00 2.17
40 41 4.883083 TGTCGCTCTTGTGTTCTAAATCT 58.117 39.130 0.00 0.00 0.00 2.40
41 42 6.020971 TGTCGCTCTTGTGTTCTAAATCTA 57.979 37.500 0.00 0.00 0.00 1.98
42 43 5.862323 TGTCGCTCTTGTGTTCTAAATCTAC 59.138 40.000 0.00 0.00 0.00 2.59
43 44 6.094061 GTCGCTCTTGTGTTCTAAATCTACT 58.906 40.000 0.00 0.00 0.00 2.57
44 45 7.094506 TGTCGCTCTTGTGTTCTAAATCTACTA 60.095 37.037 0.00 0.00 0.00 1.82
45 46 7.916450 GTCGCTCTTGTGTTCTAAATCTACTAT 59.084 37.037 0.00 0.00 0.00 2.12
46 47 8.467598 TCGCTCTTGTGTTCTAAATCTACTATT 58.532 33.333 0.00 0.00 0.00 1.73
73 74 1.002033 ACGTGACGTCCACTCAACTAC 60.002 52.381 14.12 0.00 43.53 2.73
79 80 5.007332 GTGACGTCCACTCAACTACAAATTT 59.993 40.000 14.12 0.00 42.44 1.82
80 81 5.235616 TGACGTCCACTCAACTACAAATTTC 59.764 40.000 14.12 0.00 0.00 2.17
81 82 5.120399 ACGTCCACTCAACTACAAATTTCA 58.880 37.500 0.00 0.00 0.00 2.69
87 88 6.207417 CCACTCAACTACAAATTTCACTCCAT 59.793 38.462 0.00 0.00 0.00 3.41
123 124 9.281371 TCTATAAATTCTGCGTACTAGCTCTAA 57.719 33.333 0.00 0.00 38.13 2.10
128 129 4.711399 TCTGCGTACTAGCTCTAATACCA 58.289 43.478 0.00 0.00 38.13 3.25
129 130 5.314529 TCTGCGTACTAGCTCTAATACCAT 58.685 41.667 0.00 0.00 38.13 3.55
142 143 7.512746 AGCTCTAATACCATATTGTTAGGACCA 59.487 37.037 0.00 0.00 0.00 4.02
150 151 2.871096 TTGTTAGGACCAGGCGAAAT 57.129 45.000 0.00 0.00 0.00 2.17
151 152 2.871096 TGTTAGGACCAGGCGAAATT 57.129 45.000 0.00 0.00 0.00 1.82
153 154 2.304761 TGTTAGGACCAGGCGAAATTCT 59.695 45.455 0.00 0.00 0.00 2.40
161 162 2.160417 CCAGGCGAAATTCTCTCAACAC 59.840 50.000 0.00 0.00 0.00 3.32
162 163 2.807967 CAGGCGAAATTCTCTCAACACA 59.192 45.455 0.00 0.00 0.00 3.72
166 167 4.083324 GGCGAAATTCTCTCAACACATTGA 60.083 41.667 0.00 0.00 42.73 2.57
167 168 4.848299 GCGAAATTCTCTCAACACATTGAC 59.152 41.667 0.00 0.00 40.01 3.18
173 174 9.778741 AAATTCTCTCAACACATTGACTTACTA 57.221 29.630 0.00 0.00 40.01 1.82
174 175 9.950496 AATTCTCTCAACACATTGACTTACTAT 57.050 29.630 0.00 0.00 40.01 2.12
184 185 9.640963 ACACATTGACTTACTATAAGAACTCAC 57.359 33.333 2.65 0.00 0.00 3.51
207 208 6.867816 CACAAAAATGTTACCATGCATACACT 59.132 34.615 0.00 0.00 0.00 3.55
211 212 7.553881 AAATGTTACCATGCATACACTAGAC 57.446 36.000 0.00 0.00 0.00 2.59
213 214 4.399934 TGTTACCATGCATACACTAGACGA 59.600 41.667 0.00 0.00 0.00 4.20
250 252 9.206870 CAATTTGGATGTAGCACTTAAAATTGT 57.793 29.630 0.00 0.00 38.24 2.71
362 368 8.177119 AGTTGTAAGTTTATGAATGGCAAAGA 57.823 30.769 0.00 0.00 0.00 2.52
375 381 4.255833 TGGCAAAGATGGTTTGATCAAC 57.744 40.909 7.89 3.65 34.18 3.18
391 397 9.362539 GTTTGATCAACCTCTAACTCGTATTTA 57.637 33.333 7.89 0.00 31.10 1.40
392 398 9.932207 TTTGATCAACCTCTAACTCGTATTTAA 57.068 29.630 7.89 0.00 0.00 1.52
394 400 9.745880 TGATCAACCTCTAACTCGTATTTAATC 57.254 33.333 0.00 0.00 0.00 1.75
395 401 9.194271 GATCAACCTCTAACTCGTATTTAATCC 57.806 37.037 0.00 0.00 0.00 3.01
396 402 7.495055 TCAACCTCTAACTCGTATTTAATCCC 58.505 38.462 0.00 0.00 0.00 3.85
399 405 6.041751 ACCTCTAACTCGTATTTAATCCCCTG 59.958 42.308 0.00 0.00 0.00 4.45
400 406 6.415206 TCTAACTCGTATTTAATCCCCTGG 57.585 41.667 0.00 0.00 0.00 4.45
401 407 6.138263 TCTAACTCGTATTTAATCCCCTGGA 58.862 40.000 0.00 0.00 35.55 3.86
403 409 7.951806 TCTAACTCGTATTTAATCCCCTGGATA 59.048 37.037 0.00 0.00 42.27 2.59
404 410 7.569599 AACTCGTATTTAATCCCCTGGATAT 57.430 36.000 0.00 0.00 42.27 1.63
405 411 8.674925 AACTCGTATTTAATCCCCTGGATATA 57.325 34.615 0.00 0.00 42.27 0.86
406 412 8.307582 ACTCGTATTTAATCCCCTGGATATAG 57.692 38.462 0.00 0.00 42.27 1.31
407 413 8.120538 ACTCGTATTTAATCCCCTGGATATAGA 58.879 37.037 0.00 0.00 42.27 1.98
408 414 8.534954 TCGTATTTAATCCCCTGGATATAGAG 57.465 38.462 0.00 0.00 42.27 2.43
409 415 8.341513 TCGTATTTAATCCCCTGGATATAGAGA 58.658 37.037 0.00 0.00 42.27 3.10
410 416 8.634444 CGTATTTAATCCCCTGGATATAGAGAG 58.366 40.741 0.00 0.00 42.27 3.20
411 417 9.495382 GTATTTAATCCCCTGGATATAGAGAGT 57.505 37.037 0.00 0.00 42.27 3.24
415 421 9.716556 TTAATCCCCTGGATATAGAGAGTATTC 57.283 37.037 0.00 0.00 42.27 1.75
416 422 6.996876 TCCCCTGGATATAGAGAGTATTCT 57.003 41.667 0.00 0.00 36.01 2.40
417 423 7.363759 TCCCCTGGATATAGAGAGTATTCTT 57.636 40.000 0.00 0.00 32.53 2.52
418 424 7.780822 TCCCCTGGATATAGAGAGTATTCTTT 58.219 38.462 0.00 0.00 32.53 2.52
419 425 8.242325 TCCCCTGGATATAGAGAGTATTCTTTT 58.758 37.037 0.00 0.00 32.53 2.27
420 426 9.548631 CCCCTGGATATAGAGAGTATTCTTTTA 57.451 37.037 0.00 0.00 32.53 1.52
433 439 7.827729 AGAGTATTCTTTTATACCAACACCCAC 59.172 37.037 0.00 0.00 32.54 4.61
439 445 9.976776 TTCTTTTATACCAACACCCACATATAA 57.023 29.630 0.00 0.00 0.00 0.98
446 452 4.037923 CCAACACCCACATATAAAGGATGC 59.962 45.833 0.00 0.00 0.00 3.91
453 459 5.829924 CCCACATATAAAGGATGCTTTGACT 59.170 40.000 21.18 8.99 0.00 3.41
457 463 7.641411 CACATATAAAGGATGCTTTGACTTTCG 59.359 37.037 21.18 6.60 35.11 3.46
545 556 2.829120 GTCTACCTCAGCCTGTTCTTCT 59.171 50.000 0.00 0.00 0.00 2.85
550 561 5.048846 ACCTCAGCCTGTTCTTCTTTTTA 57.951 39.130 0.00 0.00 0.00 1.52
552 563 5.891551 ACCTCAGCCTGTTCTTCTTTTTAAA 59.108 36.000 0.00 0.00 0.00 1.52
553 564 6.039829 ACCTCAGCCTGTTCTTCTTTTTAAAG 59.960 38.462 0.00 0.00 37.36 1.85
554 565 6.263168 CCTCAGCCTGTTCTTCTTTTTAAAGA 59.737 38.462 0.89 0.89 42.91 2.52
620 631 3.455990 TGCGTGTACACCAAGAACTAA 57.544 42.857 20.11 0.00 0.00 2.24
658 669 2.357009 CACTTGGATGGACATTAGCTGC 59.643 50.000 0.00 0.00 0.00 5.25
659 670 1.952296 CTTGGATGGACATTAGCTGCC 59.048 52.381 0.00 0.00 0.00 4.85
665 676 1.291132 GGACATTAGCTGCCGAAGTC 58.709 55.000 0.00 0.06 0.00 3.01
682 693 5.986135 CCGAAGTCCTAAACTAATCCATCAG 59.014 44.000 0.00 0.00 37.17 2.90
702 713 2.159226 AGAATGCCGTTCTAGAACTCCG 60.159 50.000 28.30 17.82 45.28 4.63
727 738 2.297033 TGCAGAACCTGAAGCAAAATCC 59.703 45.455 0.00 0.00 33.48 3.01
729 740 3.243839 GCAGAACCTGAAGCAAAATCCAA 60.244 43.478 0.00 0.00 32.44 3.53
731 742 3.321968 AGAACCTGAAGCAAAATCCAACC 59.678 43.478 0.00 0.00 0.00 3.77
732 743 2.962859 ACCTGAAGCAAAATCCAACCT 58.037 42.857 0.00 0.00 0.00 3.50
734 745 3.160269 CCTGAAGCAAAATCCAACCTCT 58.840 45.455 0.00 0.00 0.00 3.69
735 746 3.192212 CCTGAAGCAAAATCCAACCTCTC 59.808 47.826 0.00 0.00 0.00 3.20
736 747 3.822735 CTGAAGCAAAATCCAACCTCTCA 59.177 43.478 0.00 0.00 0.00 3.27
900 911 1.134371 ACGAGCAATAGCCTTTCCTCC 60.134 52.381 0.00 0.00 43.56 4.30
1014 1025 2.128290 CTCCCATGGCGGCCATATCA 62.128 60.000 32.52 17.86 43.15 2.15
1249 1260 2.960659 CTCTGCATCCAGCTCGCG 60.961 66.667 0.00 0.00 45.94 5.87
1389 1401 4.497291 GGTAATATGACACCCTGTTCCA 57.503 45.455 0.00 0.00 0.00 3.53
1391 1403 5.445964 GGTAATATGACACCCTGTTCCATT 58.554 41.667 0.00 0.00 0.00 3.16
1425 1437 2.097791 CCAAACCCTCGTTTCGTTTGAA 59.902 45.455 12.21 0.00 45.88 2.69
1427 1439 2.027003 ACCCTCGTTTCGTTTGAACA 57.973 45.000 0.00 0.00 32.71 3.18
1432 1444 1.666700 TCGTTTCGTTTGAACAGGGTG 59.333 47.619 0.00 0.00 32.71 4.61
1433 1445 1.835121 GTTTCGTTTGAACAGGGTGC 58.165 50.000 0.00 0.00 32.71 5.01
1449 1572 1.153249 TGCCAGCACGCCTTATACC 60.153 57.895 0.00 0.00 0.00 2.73
1454 1577 2.687935 CCAGCACGCCTTATACCAATTT 59.312 45.455 0.00 0.00 0.00 1.82
1455 1578 3.130340 CCAGCACGCCTTATACCAATTTT 59.870 43.478 0.00 0.00 0.00 1.82
1462 1585 6.636850 CACGCCTTATACCAATTTTTAGCATC 59.363 38.462 0.00 0.00 0.00 3.91
1504 1627 3.716381 CGGGCACTGGTTACCCTA 58.284 61.111 0.00 0.00 41.86 3.53
1520 1643 4.965119 ACCCTATGATTCTTTTTGCGAC 57.035 40.909 0.00 0.00 0.00 5.19
1522 1645 4.396166 ACCCTATGATTCTTTTTGCGACAG 59.604 41.667 0.00 0.00 0.00 3.51
1524 1647 5.106157 CCCTATGATTCTTTTTGCGACAGTT 60.106 40.000 0.00 0.00 0.00 3.16
1526 1649 7.201732 CCCTATGATTCTTTTTGCGACAGTTAT 60.202 37.037 0.00 0.00 0.00 1.89
1532 1655 8.871686 ATTCTTTTTGCGACAGTTATCTTTTT 57.128 26.923 0.00 0.00 0.00 1.94
1541 1664 9.210329 TGCGACAGTTATCTTTTTAACTCATTA 57.790 29.630 0.00 0.00 39.75 1.90
1587 1716 5.423886 TGTTGTGCATTCGAGGTAATATGA 58.576 37.500 0.00 0.00 0.00 2.15
1617 1753 9.927668 CAACCTGAAATTAGAAATGGTTATGTT 57.072 29.630 0.00 0.00 34.96 2.71
1636 1772 9.477484 GTTATGTTCCCTTATACTACTCATGTG 57.523 37.037 0.00 0.00 0.00 3.21
1661 1797 6.579666 TTGAAATTCAGTCTCATTTCCTGG 57.420 37.500 9.92 0.00 38.23 4.45
2178 2316 7.073342 ACTCTTTAATCCTAACAATTGTCGC 57.927 36.000 12.39 0.00 0.00 5.19
2192 2330 3.363341 TTGTCGCTTTTGGATTGGTTC 57.637 42.857 0.00 0.00 0.00 3.62
2287 2425 3.324556 ACCATTTGTGCCTGTGCTAAAAT 59.675 39.130 0.00 0.00 38.71 1.82
2337 2475 1.073284 GGGTCAACTGTTGGAAGGCTA 59.927 52.381 19.55 0.00 0.00 3.93
2393 2531 0.183492 ACTTTCTTGCTGCTGGGACA 59.817 50.000 0.00 0.00 0.00 4.02
2504 2642 7.020010 CACAAGAGAAGCTTAATCATGTGAAC 58.980 38.462 28.45 4.90 34.31 3.18
2731 2869 3.068024 TGTTTGCTCTTGGATTTGTCACC 59.932 43.478 0.00 0.00 0.00 4.02
3194 3336 3.763360 CCTTGGCACCAAAATCTCATGTA 59.237 43.478 3.29 0.00 35.33 2.29
3697 3842 8.133024 ACAATATTTTTCTAGAATTGGGCACA 57.867 30.769 16.32 0.00 32.97 4.57
3702 3847 7.546778 TTTTTCTAGAATTGGGCACAAAAAC 57.453 32.000 4.97 0.00 40.55 2.43
3748 3893 4.792068 ACCCATCTCTTCTTCACAAAACA 58.208 39.130 0.00 0.00 0.00 2.83
3818 3963 9.628500 ACAATGAGTTAATTAATTACTCCCTCC 57.372 33.333 21.86 9.04 0.00 4.30
3819 3964 9.627123 CAATGAGTTAATTAATTACTCCCTCCA 57.373 33.333 21.86 12.31 0.00 3.86
3824 3969 8.787818 AGTTAATTAATTACTCCCTCCATTCCA 58.212 33.333 7.43 0.00 0.00 3.53
3830 3975 9.640952 TTAATTACTCCCTCCATTCCAAAATAG 57.359 33.333 0.00 0.00 0.00 1.73
3831 3976 6.901615 TTACTCCCTCCATTCCAAAATAGA 57.098 37.500 0.00 0.00 0.00 1.98
3834 3979 5.433051 ACTCCCTCCATTCCAAAATAGATGA 59.567 40.000 0.00 0.00 0.00 2.92
3837 3982 5.767168 CCCTCCATTCCAAAATAGATGACTC 59.233 44.000 0.00 0.00 0.00 3.36
3838 3983 6.359804 CCTCCATTCCAAAATAGATGACTCA 58.640 40.000 0.00 0.00 0.00 3.41
3839 3984 6.830324 CCTCCATTCCAAAATAGATGACTCAA 59.170 38.462 0.00 0.00 0.00 3.02
3840 3985 7.201767 CCTCCATTCCAAAATAGATGACTCAAC 60.202 40.741 0.00 0.00 0.00 3.18
3841 3986 7.405292 TCCATTCCAAAATAGATGACTCAACT 58.595 34.615 0.00 0.00 0.00 3.16
3842 3987 7.890127 TCCATTCCAAAATAGATGACTCAACTT 59.110 33.333 0.00 0.00 0.00 2.66
3843 3988 8.526147 CCATTCCAAAATAGATGACTCAACTTT 58.474 33.333 0.00 0.00 0.00 2.66
3844 3989 9.350357 CATTCCAAAATAGATGACTCAACTTTG 57.650 33.333 0.00 0.00 0.00 2.77
3845 3990 8.463930 TTCCAAAATAGATGACTCAACTTTGT 57.536 30.769 0.00 0.00 0.00 2.83
3846 3991 9.567776 TTCCAAAATAGATGACTCAACTTTGTA 57.432 29.630 0.00 0.00 0.00 2.41
3855 4000 9.614792 AGATGACTCAACTTTGTACTAACTTTT 57.385 29.630 0.00 0.00 0.00 2.27
3856 4001 9.865484 GATGACTCAACTTTGTACTAACTTTTC 57.135 33.333 0.00 0.00 0.00 2.29
3858 4003 7.281549 TGACTCAACTTTGTACTAACTTTTCCC 59.718 37.037 0.00 0.00 0.00 3.97
3859 4004 7.344134 ACTCAACTTTGTACTAACTTTTCCCT 58.656 34.615 0.00 0.00 0.00 4.20
3860 4005 7.498239 ACTCAACTTTGTACTAACTTTTCCCTC 59.502 37.037 0.00 0.00 0.00 4.30
3861 4006 6.769341 TCAACTTTGTACTAACTTTTCCCTCC 59.231 38.462 0.00 0.00 0.00 4.30
3862 4007 5.303165 ACTTTGTACTAACTTTTCCCTCCG 58.697 41.667 0.00 0.00 0.00 4.63
3863 4008 4.961438 TTGTACTAACTTTTCCCTCCGT 57.039 40.909 0.00 0.00 0.00 4.69
3865 4010 4.886579 TGTACTAACTTTTCCCTCCGTTC 58.113 43.478 0.00 0.00 0.00 3.95
3867 4012 2.707257 ACTAACTTTTCCCTCCGTTCCA 59.293 45.455 0.00 0.00 0.00 3.53
3868 4013 2.740506 AACTTTTCCCTCCGTTCCAA 57.259 45.000 0.00 0.00 0.00 3.53
3870 4015 2.304092 ACTTTTCCCTCCGTTCCAAAC 58.696 47.619 0.00 0.00 0.00 2.93
3871 4016 2.303175 CTTTTCCCTCCGTTCCAAACA 58.697 47.619 0.00 0.00 0.00 2.83
3873 4018 1.904287 TTCCCTCCGTTCCAAACATG 58.096 50.000 0.00 0.00 0.00 3.21
3874 4019 0.037590 TCCCTCCGTTCCAAACATGG 59.962 55.000 0.00 0.00 0.00 3.66
3875 4020 0.037590 CCCTCCGTTCCAAACATGGA 59.962 55.000 0.00 0.00 35.93 3.41
3877 4022 2.446435 CCTCCGTTCCAAACATGGATT 58.554 47.619 0.00 0.00 37.87 3.01
3878 4023 2.825532 CCTCCGTTCCAAACATGGATTT 59.174 45.455 0.00 0.00 37.87 2.17
3879 4024 3.119495 CCTCCGTTCCAAACATGGATTTC 60.119 47.826 0.00 0.00 37.87 2.17
3880 4025 2.486203 TCCGTTCCAAACATGGATTTCG 59.514 45.455 0.00 4.90 37.87 3.46
3882 4027 3.426159 CCGTTCCAAACATGGATTTCGAG 60.426 47.826 14.43 5.92 37.87 4.04
3883 4028 3.188460 CGTTCCAAACATGGATTTCGAGT 59.812 43.478 0.00 0.00 37.87 4.18
3884 4029 4.669197 CGTTCCAAACATGGATTTCGAGTC 60.669 45.833 0.00 0.00 37.87 3.36
3885 4030 3.000041 TCCAAACATGGATTTCGAGTCG 59.000 45.455 6.09 6.09 32.09 4.18
3886 4031 2.476185 CCAAACATGGATTTCGAGTCGC 60.476 50.000 7.92 0.00 0.00 5.19
3888 4033 1.927895 ACATGGATTTCGAGTCGCTC 58.072 50.000 7.92 4.43 0.00 5.03
3935 4080 8.804688 GACTAGTCTATGAGTCGCAAAAATAT 57.195 34.615 15.91 0.00 33.27 1.28
3936 4081 8.581057 ACTAGTCTATGAGTCGCAAAAATATG 57.419 34.615 0.00 0.00 0.00 1.78
3937 4082 6.851222 AGTCTATGAGTCGCAAAAATATGG 57.149 37.500 0.00 0.00 0.00 2.74
3940 4085 4.536364 ATGAGTCGCAAAAATATGGTCG 57.464 40.909 0.00 0.00 0.00 4.79
3942 4087 3.369756 TGAGTCGCAAAAATATGGTCGAC 59.630 43.478 7.13 7.13 44.36 4.20
3944 4089 3.924610 GTCGCAAAAATATGGTCGACTC 58.075 45.455 16.46 6.30 41.84 3.36
3947 4092 3.685058 GCAAAAATATGGTCGACTCAGC 58.315 45.455 16.46 6.06 0.00 4.26
3948 4093 3.375299 GCAAAAATATGGTCGACTCAGCT 59.625 43.478 16.46 0.87 0.00 4.24
3949 4094 4.142600 GCAAAAATATGGTCGACTCAGCTT 60.143 41.667 16.46 6.75 0.00 3.74
3951 4096 6.709643 CAAAAATATGGTCGACTCAGCTTAG 58.290 40.000 16.46 0.00 0.00 2.18
3952 4097 5.599999 AAATATGGTCGACTCAGCTTAGT 57.400 39.130 16.46 0.00 0.00 2.24
3953 4098 2.949451 ATGGTCGACTCAGCTTAGTG 57.051 50.000 16.46 0.00 0.00 2.74
3954 4099 1.617322 TGGTCGACTCAGCTTAGTGT 58.383 50.000 16.46 0.00 0.00 3.55
3955 4100 1.540267 TGGTCGACTCAGCTTAGTGTC 59.460 52.381 16.46 0.80 0.00 3.67
3960 4105 3.125698 GACTCAGCTTAGTGTCGACTC 57.874 52.381 17.92 13.63 33.21 3.36
3961 4106 1.465387 ACTCAGCTTAGTGTCGACTCG 59.535 52.381 17.92 1.95 33.21 4.18
3962 4107 0.168348 TCAGCTTAGTGTCGACTCGC 59.832 55.000 17.92 11.93 33.21 5.03
3963 4108 1.128724 CAGCTTAGTGTCGACTCGCG 61.129 60.000 17.92 0.00 42.69 5.87
3971 4116 3.475944 TCGACTCGCGACTCTGAG 58.524 61.111 3.71 2.45 45.59 3.35
3982 4127 1.361793 GACTCTGAGTCGCGACTAGT 58.638 55.000 39.33 35.48 42.66 2.57
3983 4128 1.325338 GACTCTGAGTCGCGACTAGTC 59.675 57.143 36.09 36.09 42.66 2.59
3984 4129 1.337917 ACTCTGAGTCGCGACTAGTCA 60.338 52.381 39.33 30.22 42.66 3.41
3985 4130 1.061421 CTCTGAGTCGCGACTAGTCAC 59.939 57.143 39.33 26.64 42.66 3.67
3986 4131 0.796927 CTGAGTCGCGACTAGTCACA 59.203 55.000 39.33 29.42 42.66 3.58
3987 4132 1.197036 CTGAGTCGCGACTAGTCACAA 59.803 52.381 39.33 18.16 42.66 3.33
3988 4133 1.069432 TGAGTCGCGACTAGTCACAAC 60.069 52.381 39.33 24.54 42.66 3.32
3989 4134 0.110328 AGTCGCGACTAGTCACAACG 60.110 55.000 38.67 18.08 40.43 4.10
3990 4135 1.441515 TCGCGACTAGTCACAACGC 60.442 57.895 22.37 17.95 44.64 4.84
3991 4136 4.238385 GCGACTAGTCACAACGCA 57.762 55.556 22.37 0.00 46.75 5.24
3992 4137 2.062779 GCGACTAGTCACAACGCAG 58.937 57.895 22.37 4.87 46.75 5.18
3993 4138 1.344942 GCGACTAGTCACAACGCAGG 61.345 60.000 22.37 4.17 46.75 4.85
3994 4139 1.344942 CGACTAGTCACAACGCAGGC 61.345 60.000 22.37 0.00 0.00 4.85
3995 4140 0.038159 GACTAGTCACAACGCAGGCT 60.038 55.000 18.20 0.00 0.00 4.58
3996 4141 0.038159 ACTAGTCACAACGCAGGCTC 60.038 55.000 0.00 0.00 0.00 4.70
3997 4142 1.073216 CTAGTCACAACGCAGGCTCG 61.073 60.000 5.08 5.08 0.00 5.03
3998 4143 1.520600 TAGTCACAACGCAGGCTCGA 61.521 55.000 12.16 0.00 0.00 4.04
3999 4144 2.355837 TCACAACGCAGGCTCGAC 60.356 61.111 12.16 0.00 0.00 4.20
4000 4145 2.356313 CACAACGCAGGCTCGACT 60.356 61.111 12.16 0.00 0.00 4.18
4001 4146 1.956170 CACAACGCAGGCTCGACTT 60.956 57.895 12.16 0.00 0.00 3.01
4002 4147 1.664965 ACAACGCAGGCTCGACTTC 60.665 57.895 12.16 0.00 0.00 3.01
4003 4148 1.373497 CAACGCAGGCTCGACTTCT 60.373 57.895 12.16 0.00 0.00 2.85
4004 4149 0.946221 CAACGCAGGCTCGACTTCTT 60.946 55.000 12.16 0.00 0.00 2.52
4005 4150 0.667792 AACGCAGGCTCGACTTCTTC 60.668 55.000 12.16 0.00 0.00 2.87
4006 4151 1.807573 CGCAGGCTCGACTTCTTCC 60.808 63.158 0.91 0.00 0.00 3.46
4007 4152 1.807573 GCAGGCTCGACTTCTTCCG 60.808 63.158 0.00 0.00 0.00 4.30
4008 4153 1.883732 CAGGCTCGACTTCTTCCGA 59.116 57.895 0.00 0.00 0.00 4.55
4015 4160 3.022981 GACTTCTTCCGAGTCGCTG 57.977 57.895 7.12 0.00 34.76 5.18
4016 4161 1.073768 GACTTCTTCCGAGTCGCTGC 61.074 60.000 7.12 0.00 34.76 5.25
4017 4162 1.807573 CTTCTTCCGAGTCGCTGCC 60.808 63.158 7.12 0.00 0.00 4.85
4018 4163 3.296709 TTCTTCCGAGTCGCTGCCC 62.297 63.158 7.12 0.00 0.00 5.36
4019 4164 4.821589 CTTCCGAGTCGCTGCCCC 62.822 72.222 7.12 0.00 0.00 5.80
4023 4168 4.504916 CGAGTCGCTGCCCCAGAG 62.505 72.222 0.00 0.00 32.44 3.35
4024 4169 4.828925 GAGTCGCTGCCCCAGAGC 62.829 72.222 0.00 0.00 32.44 4.09
4029 4174 4.828925 GCTGCCCCAGAGCGACTC 62.829 72.222 0.00 0.00 32.44 3.36
4030 4175 4.504916 CTGCCCCAGAGCGACTCG 62.505 72.222 0.00 0.00 35.36 4.18
4053 4198 3.372795 AGTCGCGACTCAAAAACCA 57.627 47.368 34.98 0.00 36.92 3.67
4054 4199 1.878953 AGTCGCGACTCAAAAACCAT 58.121 45.000 34.98 10.31 36.92 3.55
4055 4200 1.531149 AGTCGCGACTCAAAAACCATG 59.469 47.619 34.98 0.00 36.92 3.66
4056 4201 0.871722 TCGCGACTCAAAAACCATGG 59.128 50.000 11.19 11.19 0.00 3.66
4057 4202 0.591170 CGCGACTCAAAAACCATGGT 59.409 50.000 13.00 13.00 0.00 3.55
4058 4203 1.001815 CGCGACTCAAAAACCATGGTT 60.002 47.619 24.86 24.86 40.45 3.67
4059 4204 2.661594 GCGACTCAAAAACCATGGTTC 58.338 47.619 29.91 14.89 37.35 3.62
4060 4205 2.607038 GCGACTCAAAAACCATGGTTCC 60.607 50.000 29.91 12.00 37.35 3.62
4061 4206 2.621055 CGACTCAAAAACCATGGTTCCA 59.379 45.455 29.91 13.05 37.35 3.53
4062 4207 3.067461 CGACTCAAAAACCATGGTTCCAA 59.933 43.478 29.91 14.70 37.35 3.53
4063 4208 4.440802 CGACTCAAAAACCATGGTTCCAAA 60.441 41.667 29.91 15.03 37.35 3.28
4064 4209 5.423886 GACTCAAAAACCATGGTTCCAAAA 58.576 37.500 29.91 13.71 37.35 2.44
4065 4210 6.000246 ACTCAAAAACCATGGTTCCAAAAT 58.000 33.333 29.91 11.04 37.35 1.82
4066 4211 7.130681 ACTCAAAAACCATGGTTCCAAAATA 57.869 32.000 29.91 11.27 37.35 1.40
4067 4212 7.216494 ACTCAAAAACCATGGTTCCAAAATAG 58.784 34.615 29.91 20.51 37.35 1.73
4068 4213 7.070571 ACTCAAAAACCATGGTTCCAAAATAGA 59.929 33.333 29.91 16.71 37.35 1.98
4069 4214 7.972301 TCAAAAACCATGGTTCCAAAATAGAT 58.028 30.769 29.91 7.94 37.35 1.98
4070 4215 7.877097 TCAAAAACCATGGTTCCAAAATAGATG 59.123 33.333 29.91 15.19 37.35 2.90
4071 4216 7.552050 AAAACCATGGTTCCAAAATAGATGA 57.448 32.000 29.91 0.00 37.35 2.92
4072 4217 6.530019 AACCATGGTTCCAAAATAGATGAC 57.470 37.500 24.86 0.00 32.09 3.06
4073 4218 5.831103 ACCATGGTTCCAAAATAGATGACT 58.169 37.500 13.00 0.00 0.00 3.41
4074 4219 5.888161 ACCATGGTTCCAAAATAGATGACTC 59.112 40.000 13.00 0.00 0.00 3.36
4075 4220 5.887598 CCATGGTTCCAAAATAGATGACTCA 59.112 40.000 2.57 0.00 0.00 3.41
4076 4221 6.377996 CCATGGTTCCAAAATAGATGACTCAA 59.622 38.462 2.57 0.00 0.00 3.02
4077 4222 6.817765 TGGTTCCAAAATAGATGACTCAAC 57.182 37.500 0.00 0.00 0.00 3.18
4078 4223 6.542821 TGGTTCCAAAATAGATGACTCAACT 58.457 36.000 0.00 0.00 0.00 3.16
4079 4224 7.004086 TGGTTCCAAAATAGATGACTCAACTT 58.996 34.615 0.00 0.00 0.00 2.66
4080 4225 7.505585 TGGTTCCAAAATAGATGACTCAACTTT 59.494 33.333 0.00 0.00 0.00 2.66
4081 4226 7.809806 GGTTCCAAAATAGATGACTCAACTTTG 59.190 37.037 0.00 0.00 0.00 2.77
4082 4227 8.352942 GTTCCAAAATAGATGACTCAACTTTGT 58.647 33.333 0.00 0.00 0.00 2.83
4083 4228 9.567776 TTCCAAAATAGATGACTCAACTTTGTA 57.432 29.630 0.00 0.00 0.00 2.41
4084 4229 9.567776 TCCAAAATAGATGACTCAACTTTGTAA 57.432 29.630 0.00 0.00 0.00 2.41
4085 4230 9.612620 CCAAAATAGATGACTCAACTTTGTAAC 57.387 33.333 0.00 0.00 0.00 2.50
4090 4235 7.865706 AGATGACTCAACTTTGTAACTTTGT 57.134 32.000 0.00 0.00 0.00 2.83
4091 4236 8.958119 AGATGACTCAACTTTGTAACTTTGTA 57.042 30.769 0.00 0.00 0.00 2.41
4092 4237 8.827677 AGATGACTCAACTTTGTAACTTTGTAC 58.172 33.333 0.00 0.00 0.00 2.90
4093 4238 8.732746 ATGACTCAACTTTGTAACTTTGTACT 57.267 30.769 0.00 0.00 0.00 2.73
4094 4239 9.826574 ATGACTCAACTTTGTAACTTTGTACTA 57.173 29.630 0.00 0.00 0.00 1.82
4095 4240 9.656040 TGACTCAACTTTGTAACTTTGTACTAA 57.344 29.630 0.00 0.00 0.00 2.24
4096 4241 9.911980 GACTCAACTTTGTAACTTTGTACTAAC 57.088 33.333 0.00 0.00 0.00 2.34
4097 4242 9.662947 ACTCAACTTTGTAACTTTGTACTAACT 57.337 29.630 0.00 0.00 0.00 2.24
4121 4266 9.880157 ACTTAAAGTTAGTACAAAGTTGAGTCA 57.120 29.630 0.00 0.00 0.00 3.41
4361 4510 9.565213 GAGTGAAATTATTTGGATTTGTCAGAG 57.435 33.333 0.00 0.00 0.00 3.35
4588 4878 2.123342 CGGCGTTCTTTCATTGCAAAA 58.877 42.857 1.71 0.00 0.00 2.44
4644 4934 1.281577 TGCCTGCTGTATTGACCATCA 59.718 47.619 0.00 0.00 0.00 3.07
4664 4954 4.746466 TCACCAATATTGTTCAGGGGTTT 58.254 39.130 14.25 0.00 0.00 3.27
4735 5025 5.590259 ACATTAGGGAATTCAACTCATTCGG 59.410 40.000 7.93 0.00 32.22 4.30
4736 5026 3.721087 AGGGAATTCAACTCATTCGGT 57.279 42.857 7.93 0.00 32.22 4.69
4740 5030 3.129287 GGAATTCAACTCATTCGGTGCAT 59.871 43.478 7.93 0.00 32.22 3.96
4749 5039 0.961019 ATTCGGTGCATGTTGCTTGT 59.039 45.000 0.00 0.00 45.31 3.16
4756 5048 1.210870 GCATGTTGCTTGTTGGTGTG 58.789 50.000 0.00 0.00 40.96 3.82
4791 5083 7.610692 CACATTCAGATATTTCTATGGGCAGAT 59.389 37.037 2.33 0.00 0.00 2.90
4806 5098 2.420129 GGCAGATCCATTGACGTTAGGT 60.420 50.000 0.00 0.00 34.01 3.08
4822 5114 6.665465 ACGTTAGGTTTGTTGCTAGATTTTC 58.335 36.000 0.00 0.00 0.00 2.29
5413 5705 4.564769 GGACTCAGCTAACTTGAATTCTCG 59.435 45.833 7.05 0.12 0.00 4.04
5684 5998 8.519799 TTTGTAATTTCTCCTTCTCTGTGTTT 57.480 30.769 0.00 0.00 0.00 2.83
5738 6054 9.159254 ACAATATATGAAGAGGTATCTGGTGAA 57.841 33.333 0.00 0.00 35.37 3.18
5741 6057 5.965033 ATGAAGAGGTATCTGGTGAATGT 57.035 39.130 0.00 0.00 35.37 2.71
5753 6076 5.491070 TCTGGTGAATGTTACAAGATGAGG 58.509 41.667 0.00 0.00 0.00 3.86
5758 6081 7.286546 TGGTGAATGTTACAAGATGAGGAAAAA 59.713 33.333 0.00 0.00 0.00 1.94
5792 6115 8.010733 TGGTGAAAAAGAAATCATTCTGACTT 57.989 30.769 0.00 0.00 45.19 3.01
5842 6165 3.637998 AGCTGAATGAAGTTGCAAGTG 57.362 42.857 7.73 0.00 0.00 3.16
5850 6173 2.170397 TGAAGTTGCAAGTGTCTGAGGA 59.830 45.455 7.73 0.00 0.00 3.71
5897 6220 1.067916 CAAGCCGCAGCCTGTTTTT 59.932 52.632 0.00 0.00 41.25 1.94
5927 6250 9.000018 CGCAAAACTTATCAATTAGCTCTAAAC 58.000 33.333 0.00 0.00 0.00 2.01
5944 6267 6.072112 TCTAAACTTTGTTCATCACTTGCC 57.928 37.500 0.00 0.00 0.00 4.52
5949 6272 6.655078 ACTTTGTTCATCACTTGCCTAAAT 57.345 33.333 0.00 0.00 0.00 1.40
5951 6274 7.500141 ACTTTGTTCATCACTTGCCTAAATTT 58.500 30.769 0.00 0.00 0.00 1.82
5952 6275 7.986889 ACTTTGTTCATCACTTGCCTAAATTTT 59.013 29.630 0.00 0.00 0.00 1.82
6027 6384 7.823799 TCGCTAATAATAGATCATTTCATGCCA 59.176 33.333 0.00 0.00 0.00 4.92
6039 6396 5.889289 TCATTTCATGCCAGATCATCAGAAA 59.111 36.000 0.00 0.00 0.00 2.52
6046 6403 4.070716 GCCAGATCATCAGAAATACCCAG 58.929 47.826 0.00 0.00 0.00 4.45
6115 6473 5.295292 CAGGTAGATGTGTGAATGGCTTAAG 59.705 44.000 0.00 0.00 0.00 1.85
6251 6613 3.547054 TTTACGCCATATCTTTCCGGT 57.453 42.857 0.00 0.00 0.00 5.28
6295 6657 1.670406 CACAAGCGCTCTGAAGCCT 60.670 57.895 12.06 0.00 46.34 4.58
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 4.557205 CGACAAACTAGTTACTCAGGCTT 58.443 43.478 8.92 0.00 0.00 4.35
1 2 3.614390 GCGACAAACTAGTTACTCAGGCT 60.614 47.826 8.92 0.00 0.00 4.58
2 3 2.666994 GCGACAAACTAGTTACTCAGGC 59.333 50.000 8.92 4.72 0.00 4.85
3 4 4.082679 AGAGCGACAAACTAGTTACTCAGG 60.083 45.833 8.92 0.00 0.00 3.86
4 5 5.049398 AGAGCGACAAACTAGTTACTCAG 57.951 43.478 8.92 1.44 0.00 3.35
5 6 5.220381 CAAGAGCGACAAACTAGTTACTCA 58.780 41.667 8.92 0.00 0.00 3.41
6 7 5.117287 CACAAGAGCGACAAACTAGTTACTC 59.883 44.000 8.92 10.64 0.00 2.59
7 8 4.982916 CACAAGAGCGACAAACTAGTTACT 59.017 41.667 8.92 1.86 0.00 2.24
8 9 4.743644 ACACAAGAGCGACAAACTAGTTAC 59.256 41.667 8.92 3.18 0.00 2.50
9 10 4.940463 ACACAAGAGCGACAAACTAGTTA 58.060 39.130 8.92 0.00 0.00 2.24
10 11 3.793559 ACACAAGAGCGACAAACTAGTT 58.206 40.909 1.12 1.12 0.00 2.24
11 12 3.454371 ACACAAGAGCGACAAACTAGT 57.546 42.857 0.00 0.00 0.00 2.57
12 13 4.051922 AGAACACAAGAGCGACAAACTAG 58.948 43.478 0.00 0.00 0.00 2.57
13 14 4.054780 AGAACACAAGAGCGACAAACTA 57.945 40.909 0.00 0.00 0.00 2.24
14 15 2.906354 AGAACACAAGAGCGACAAACT 58.094 42.857 0.00 0.00 0.00 2.66
15 16 4.789095 TTAGAACACAAGAGCGACAAAC 57.211 40.909 0.00 0.00 0.00 2.93
16 17 5.758296 AGATTTAGAACACAAGAGCGACAAA 59.242 36.000 0.00 0.00 0.00 2.83
17 18 5.297547 AGATTTAGAACACAAGAGCGACAA 58.702 37.500 0.00 0.00 0.00 3.18
18 19 4.883083 AGATTTAGAACACAAGAGCGACA 58.117 39.130 0.00 0.00 0.00 4.35
19 20 6.094061 AGTAGATTTAGAACACAAGAGCGAC 58.906 40.000 0.00 0.00 0.00 5.19
20 21 6.268825 AGTAGATTTAGAACACAAGAGCGA 57.731 37.500 0.00 0.00 0.00 4.93
21 22 8.635877 AATAGTAGATTTAGAACACAAGAGCG 57.364 34.615 0.00 0.00 0.00 5.03
32 33 9.788889 TCACGTCAGGATAATAGTAGATTTAGA 57.211 33.333 0.00 0.00 0.00 2.10
33 34 9.828852 GTCACGTCAGGATAATAGTAGATTTAG 57.171 37.037 0.00 0.00 0.00 1.85
34 35 8.501580 CGTCACGTCAGGATAATAGTAGATTTA 58.498 37.037 0.00 0.00 0.00 1.40
35 36 7.013083 ACGTCACGTCAGGATAATAGTAGATTT 59.987 37.037 0.00 0.00 33.69 2.17
36 37 6.485984 ACGTCACGTCAGGATAATAGTAGATT 59.514 38.462 0.00 0.00 33.69 2.40
37 38 5.996513 ACGTCACGTCAGGATAATAGTAGAT 59.003 40.000 0.00 0.00 33.69 1.98
38 39 5.363101 ACGTCACGTCAGGATAATAGTAGA 58.637 41.667 0.00 0.00 33.69 2.59
39 40 5.670149 ACGTCACGTCAGGATAATAGTAG 57.330 43.478 0.00 0.00 33.69 2.57
96 97 8.343168 AGAGCTAGTACGCAGAATTTATAGAT 57.657 34.615 0.00 0.00 0.00 1.98
97 98 7.747155 AGAGCTAGTACGCAGAATTTATAGA 57.253 36.000 0.00 0.00 0.00 1.98
101 102 8.295288 GGTATTAGAGCTAGTACGCAGAATTTA 58.705 37.037 0.00 0.00 31.47 1.40
123 124 4.262894 CGCCTGGTCCTAACAATATGGTAT 60.263 45.833 0.00 0.00 0.00 2.73
128 129 4.497291 TTTCGCCTGGTCCTAACAATAT 57.503 40.909 0.00 0.00 0.00 1.28
129 130 3.985019 TTTCGCCTGGTCCTAACAATA 57.015 42.857 0.00 0.00 0.00 1.90
142 143 3.126001 TGTGTTGAGAGAATTTCGCCT 57.874 42.857 0.00 0.00 0.00 5.52
229 231 8.100791 ACTCTACAATTTTAAGTGCTACATCCA 58.899 33.333 0.00 0.00 0.00 3.41
230 232 8.494016 ACTCTACAATTTTAAGTGCTACATCC 57.506 34.615 0.00 0.00 0.00 3.51
345 351 6.873076 TCAAACCATCTTTGCCATTCATAAAC 59.127 34.615 0.00 0.00 0.00 2.01
375 381 6.456501 CAGGGGATTAAATACGAGTTAGAGG 58.543 44.000 0.00 0.00 0.00 3.69
383 389 8.341513 TCTCTATATCCAGGGGATTAAATACGA 58.658 37.037 2.64 0.00 39.79 3.43
391 397 7.960821 AGAATACTCTCTATATCCAGGGGATT 58.039 38.462 2.64 0.00 39.79 3.01
392 398 7.553110 AGAATACTCTCTATATCCAGGGGAT 57.447 40.000 2.92 2.92 45.40 3.85
394 400 8.442660 AAAAGAATACTCTCTATATCCAGGGG 57.557 38.462 0.00 0.00 0.00 4.79
405 411 8.265764 GGGTGTTGGTATAAAAGAATACTCTCT 58.734 37.037 0.00 0.00 33.62 3.10
406 412 8.044908 TGGGTGTTGGTATAAAAGAATACTCTC 58.955 37.037 0.00 0.00 33.62 3.20
407 413 7.827729 GTGGGTGTTGGTATAAAAGAATACTCT 59.172 37.037 0.00 0.00 33.62 3.24
408 414 7.608761 TGTGGGTGTTGGTATAAAAGAATACTC 59.391 37.037 0.00 0.00 33.62 2.59
409 415 7.463431 TGTGGGTGTTGGTATAAAAGAATACT 58.537 34.615 0.00 0.00 33.62 2.12
410 416 7.690952 TGTGGGTGTTGGTATAAAAGAATAC 57.309 36.000 0.00 0.00 0.00 1.89
413 419 9.976776 TTATATGTGGGTGTTGGTATAAAAGAA 57.023 29.630 0.00 0.00 0.00 2.52
414 420 9.976776 TTTATATGTGGGTGTTGGTATAAAAGA 57.023 29.630 0.00 0.00 0.00 2.52
416 422 9.191479 CCTTTATATGTGGGTGTTGGTATAAAA 57.809 33.333 0.00 0.00 0.00 1.52
417 423 8.558312 TCCTTTATATGTGGGTGTTGGTATAAA 58.442 33.333 0.00 0.00 0.00 1.40
418 424 8.103660 TCCTTTATATGTGGGTGTTGGTATAA 57.896 34.615 0.00 0.00 0.00 0.98
419 425 7.693533 TCCTTTATATGTGGGTGTTGGTATA 57.306 36.000 0.00 0.00 0.00 1.47
420 426 6.584471 TCCTTTATATGTGGGTGTTGGTAT 57.416 37.500 0.00 0.00 0.00 2.73
421 427 6.361433 CATCCTTTATATGTGGGTGTTGGTA 58.639 40.000 0.00 0.00 0.00 3.25
422 428 4.938575 TCCTTTATATGTGGGTGTTGGT 57.061 40.909 0.00 0.00 0.00 3.67
423 429 4.037923 GCATCCTTTATATGTGGGTGTTGG 59.962 45.833 0.00 0.00 34.64 3.77
424 430 4.889409 AGCATCCTTTATATGTGGGTGTTG 59.111 41.667 0.00 0.00 34.64 3.33
425 431 5.129368 AGCATCCTTTATATGTGGGTGTT 57.871 39.130 0.00 0.00 34.64 3.32
426 432 4.796110 AGCATCCTTTATATGTGGGTGT 57.204 40.909 0.00 0.00 34.64 4.16
427 433 5.593909 TCAAAGCATCCTTTATATGTGGGTG 59.406 40.000 0.00 0.00 39.20 4.61
428 434 5.594317 GTCAAAGCATCCTTTATATGTGGGT 59.406 40.000 0.00 0.00 39.20 4.51
433 439 7.697691 ACGAAAGTCAAAGCATCCTTTATATG 58.302 34.615 0.00 0.00 44.19 1.78
453 459 8.836413 AGATTTGTGTCTTTATTTCTCACGAAA 58.164 29.630 0.00 0.00 42.83 3.46
457 463 9.950680 TTTCAGATTTGTGTCTTTATTTCTCAC 57.049 29.630 0.00 0.00 0.00 3.51
527 538 4.706842 AAAAGAAGAACAGGCTGAGGTA 57.293 40.909 23.66 0.00 0.00 3.08
620 631 7.118496 TCCAAGTGTTTTGGAATGTTGTTAT 57.882 32.000 6.18 0.00 44.90 1.89
658 669 5.914033 TGATGGATTAGTTTAGGACTTCGG 58.086 41.667 0.00 0.00 39.86 4.30
659 670 6.806751 TCTGATGGATTAGTTTAGGACTTCG 58.193 40.000 0.00 0.00 39.86 3.79
665 676 5.180117 CGGCATTCTGATGGATTAGTTTAGG 59.820 44.000 0.00 0.00 33.72 2.69
682 693 2.159282 TCGGAGTTCTAGAACGGCATTC 60.159 50.000 25.92 18.29 45.50 2.67
702 713 3.648339 TTGCTTCAGGTTCTGCAATTC 57.352 42.857 0.00 0.00 39.98 2.17
724 735 0.549950 CATGGGCTGAGAGGTTGGAT 59.450 55.000 0.00 0.00 0.00 3.41
725 736 0.547471 TCATGGGCTGAGAGGTTGGA 60.547 55.000 0.00 0.00 0.00 3.53
727 738 2.205022 TTTCATGGGCTGAGAGGTTG 57.795 50.000 0.00 0.00 34.68 3.77
729 740 3.245371 TGAAATTTCATGGGCTGAGAGGT 60.245 43.478 16.91 0.00 34.68 3.85
752 763 1.743958 TGGTTTCGAACGGCTTTTTGA 59.256 42.857 0.00 0.00 0.00 2.69
1014 1025 3.188786 GCAGCGAACGGAAGCGAT 61.189 61.111 0.00 0.00 38.61 4.58
1219 1230 2.750657 GCAGAGGGATGGGGGACTG 61.751 68.421 0.00 0.00 0.00 3.51
1229 1240 2.429767 CGAGCTGGATGCAGAGGGA 61.430 63.158 19.59 0.00 45.94 4.20
1389 1401 1.009997 TTTGGGATGGGAGCAGGAAT 58.990 50.000 0.00 0.00 0.00 3.01
1391 1403 1.691219 GTTTGGGATGGGAGCAGGA 59.309 57.895 0.00 0.00 0.00 3.86
1432 1444 0.746563 TTGGTATAAGGCGTGCTGGC 60.747 55.000 0.00 0.00 45.27 4.85
1433 1445 1.967319 ATTGGTATAAGGCGTGCTGG 58.033 50.000 0.00 0.00 0.00 4.85
1455 1578 8.859156 GCGAAAAATTGAACAATTAGATGCTAA 58.141 29.630 12.20 0.00 39.88 3.09
1462 1585 6.346518 GGTGGTGCGAAAAATTGAACAATTAG 60.347 38.462 12.20 6.82 39.88 1.73
1500 1623 4.396166 ACTGTCGCAAAAAGAATCATAGGG 59.604 41.667 0.00 0.00 0.00 3.53
1504 1627 7.383102 AGATAACTGTCGCAAAAAGAATCAT 57.617 32.000 0.00 0.00 0.00 2.45
1541 1664 8.102484 ACAGGAACTATACCTTGATGGTAAAT 57.898 34.615 1.05 0.00 46.99 1.40
1543 1666 7.037873 ACAACAGGAACTATACCTTGATGGTAA 60.038 37.037 1.05 0.00 46.99 2.85
1551 1680 4.634012 TGCACAACAGGAACTATACCTT 57.366 40.909 0.00 0.00 36.02 3.50
1554 1683 4.868171 TCGAATGCACAACAGGAACTATAC 59.132 41.667 0.00 0.00 36.02 1.47
1587 1716 7.781324 ACCATTTCTAATTTCAGGTTGATGT 57.219 32.000 0.00 0.00 0.00 3.06
1615 1751 8.421784 TCAATCACATGAGTAGTATAAGGGAAC 58.578 37.037 0.00 0.00 0.00 3.62
1617 1753 8.547481 TTCAATCACATGAGTAGTATAAGGGA 57.453 34.615 0.00 0.00 0.00 4.20
1624 1760 9.371136 GACTGAATTTCAATCACATGAGTAGTA 57.629 33.333 0.00 0.00 0.00 1.82
1625 1761 8.099537 AGACTGAATTTCAATCACATGAGTAGT 58.900 33.333 10.20 0.00 0.00 2.73
1636 1772 7.121759 TCCAGGAAATGAGACTGAATTTCAATC 59.878 37.037 16.49 0.00 42.18 2.67
1953 2091 4.169508 CAAGACGTTACTGAGACCATGAG 58.830 47.826 0.00 0.00 0.00 2.90
2192 2330 6.111382 ACACTAATCATCAGTTCATCACAGG 58.889 40.000 0.00 0.00 0.00 4.00
2393 2531 3.191162 TCGTAGTTGCTACACGTTACCAT 59.809 43.478 17.13 0.00 36.83 3.55
2731 2869 4.302455 CTTCCATAAGCTGGTCATAGACG 58.698 47.826 0.00 0.00 46.08 4.18
2956 3094 8.519799 AATTATAACAATCCCACTTGTACCAG 57.480 34.615 0.00 0.00 38.38 4.00
3128 3270 4.141855 AGCATACAAACACGTAAGCAAC 57.858 40.909 0.00 0.00 38.28 4.17
3207 3349 3.051081 TGCCAACAAAGCAAACAAACT 57.949 38.095 0.00 0.00 37.28 2.66
3588 3732 7.115414 ACAAACAATGATGGGAAAAGGAAAAA 58.885 30.769 0.00 0.00 0.00 1.94
3593 3737 5.469760 GGAAACAAACAATGATGGGAAAAGG 59.530 40.000 0.00 0.00 0.00 3.11
3595 3739 6.245890 AGGAAACAAACAATGATGGGAAAA 57.754 33.333 0.00 0.00 0.00 2.29
3599 3743 8.620116 AAAATTAGGAAACAAACAATGATGGG 57.380 30.769 0.00 0.00 0.00 4.00
3697 3842 6.266168 TGACATTTCACTCACACTGTTTTT 57.734 33.333 0.00 0.00 0.00 1.94
3702 3847 8.177663 GGTAATATTGACATTTCACTCACACTG 58.822 37.037 0.00 0.00 0.00 3.66
3818 3963 9.350357 CAAAGTTGAGTCATCTATTTTGGAATG 57.650 33.333 4.14 0.00 35.65 2.67
3819 3964 9.082313 ACAAAGTTGAGTCATCTATTTTGGAAT 57.918 29.630 14.35 0.00 40.00 3.01
3830 3975 9.865484 GAAAAGTTAGTACAAAGTTGAGTCATC 57.135 33.333 0.00 0.00 0.00 2.92
3831 3976 8.837389 GGAAAAGTTAGTACAAAGTTGAGTCAT 58.163 33.333 0.00 0.00 0.00 3.06
3834 3979 7.344134 AGGGAAAAGTTAGTACAAAGTTGAGT 58.656 34.615 0.00 0.00 0.00 3.41
3837 3982 6.293244 CGGAGGGAAAAGTTAGTACAAAGTTG 60.293 42.308 0.00 0.00 0.00 3.16
3838 3983 5.761726 CGGAGGGAAAAGTTAGTACAAAGTT 59.238 40.000 0.00 0.00 0.00 2.66
3839 3984 5.163269 ACGGAGGGAAAAGTTAGTACAAAGT 60.163 40.000 0.00 0.00 0.00 2.66
3840 3985 5.303165 ACGGAGGGAAAAGTTAGTACAAAG 58.697 41.667 0.00 0.00 0.00 2.77
3841 3986 5.294734 ACGGAGGGAAAAGTTAGTACAAA 57.705 39.130 0.00 0.00 0.00 2.83
3842 3987 4.961438 ACGGAGGGAAAAGTTAGTACAA 57.039 40.909 0.00 0.00 0.00 2.41
3843 3988 4.262592 GGAACGGAGGGAAAAGTTAGTACA 60.263 45.833 0.00 0.00 0.00 2.90
3844 3989 4.248859 GGAACGGAGGGAAAAGTTAGTAC 58.751 47.826 0.00 0.00 0.00 2.73
3845 3990 3.903090 TGGAACGGAGGGAAAAGTTAGTA 59.097 43.478 0.00 0.00 0.00 1.82
3846 3991 2.707257 TGGAACGGAGGGAAAAGTTAGT 59.293 45.455 0.00 0.00 0.00 2.24
3849 3994 2.691526 GTTTGGAACGGAGGGAAAAGTT 59.308 45.455 0.00 0.00 0.00 2.66
3851 3996 2.303175 TGTTTGGAACGGAGGGAAAAG 58.697 47.619 0.00 0.00 0.00 2.27
3852 3997 2.438800 TGTTTGGAACGGAGGGAAAA 57.561 45.000 0.00 0.00 0.00 2.29
3854 3999 1.546773 CCATGTTTGGAACGGAGGGAA 60.547 52.381 0.00 0.00 46.92 3.97
3855 4000 0.037590 CCATGTTTGGAACGGAGGGA 59.962 55.000 0.00 0.00 46.92 4.20
3856 4001 2.566824 CCATGTTTGGAACGGAGGG 58.433 57.895 0.00 0.00 46.92 4.30
3865 4010 2.476185 GCGACTCGAAATCCATGTTTGG 60.476 50.000 1.63 0.00 45.15 3.28
3867 4012 2.673368 GAGCGACTCGAAATCCATGTTT 59.327 45.455 1.63 0.00 0.00 2.83
3868 4013 2.271800 GAGCGACTCGAAATCCATGTT 58.728 47.619 1.63 0.00 0.00 2.71
3911 4056 7.653713 CCATATTTTTGCGACTCATAGACTAGT 59.346 37.037 0.00 0.00 0.00 2.57
3912 4057 7.653713 ACCATATTTTTGCGACTCATAGACTAG 59.346 37.037 0.00 0.00 0.00 2.57
3913 4058 7.497595 ACCATATTTTTGCGACTCATAGACTA 58.502 34.615 0.00 0.00 0.00 2.59
3914 4059 6.349300 ACCATATTTTTGCGACTCATAGACT 58.651 36.000 0.00 0.00 0.00 3.24
3917 4062 5.462068 TCGACCATATTTTTGCGACTCATAG 59.538 40.000 0.00 0.00 0.00 2.23
3919 4064 4.034048 GTCGACCATATTTTTGCGACTCAT 59.966 41.667 3.51 0.00 43.18 2.90
3921 4066 3.924610 GTCGACCATATTTTTGCGACTC 58.075 45.455 3.51 0.00 43.18 3.36
3923 4068 3.369756 TGAGTCGACCATATTTTTGCGAC 59.630 43.478 13.01 0.00 45.83 5.19
3924 4069 3.591023 TGAGTCGACCATATTTTTGCGA 58.409 40.909 13.01 0.00 0.00 5.10
3925 4070 3.785505 GCTGAGTCGACCATATTTTTGCG 60.786 47.826 13.01 0.00 0.00 4.85
3926 4071 3.375299 AGCTGAGTCGACCATATTTTTGC 59.625 43.478 13.01 7.80 0.00 3.68
3927 4072 5.551760 AAGCTGAGTCGACCATATTTTTG 57.448 39.130 13.01 0.00 0.00 2.44
3928 4073 6.313905 CACTAAGCTGAGTCGACCATATTTTT 59.686 38.462 13.01 1.53 0.00 1.94
3929 4074 5.812642 CACTAAGCTGAGTCGACCATATTTT 59.187 40.000 13.01 3.16 0.00 1.82
3930 4075 5.105310 ACACTAAGCTGAGTCGACCATATTT 60.105 40.000 13.01 4.77 0.00 1.40
3931 4076 4.402793 ACACTAAGCTGAGTCGACCATATT 59.597 41.667 13.01 9.73 0.00 1.28
3932 4077 3.954904 ACACTAAGCTGAGTCGACCATAT 59.045 43.478 13.01 0.00 0.00 1.78
3933 4078 3.353557 ACACTAAGCTGAGTCGACCATA 58.646 45.455 13.01 0.00 0.00 2.74
3935 4080 1.540267 GACACTAAGCTGAGTCGACCA 59.460 52.381 13.01 9.18 0.00 4.02
3936 4081 2.265647 GACACTAAGCTGAGTCGACC 57.734 55.000 13.01 4.42 0.00 4.79
3940 4085 2.474856 CGAGTCGACACTAAGCTGAGTC 60.475 54.545 19.50 0.00 30.63 3.36
3942 4087 1.792273 GCGAGTCGACACTAAGCTGAG 60.792 57.143 18.61 0.00 34.91 3.35
3943 4088 0.168348 GCGAGTCGACACTAAGCTGA 59.832 55.000 18.61 0.00 34.91 4.26
3944 4089 1.128724 CGCGAGTCGACACTAAGCTG 61.129 60.000 18.61 7.91 41.67 4.24
3954 4099 1.352882 GACTCAGAGTCGCGAGTCGA 61.353 60.000 32.03 28.39 46.20 4.20
3955 4100 1.059681 GACTCAGAGTCGCGAGTCG 59.940 63.158 32.03 26.38 46.20 4.18
3963 4108 1.325338 GACTAGTCGCGACTCAGAGTC 59.675 57.143 42.28 38.54 42.54 3.36
3964 4109 1.337917 TGACTAGTCGCGACTCAGAGT 60.338 52.381 42.28 36.76 42.54 3.24
3965 4110 1.061421 GTGACTAGTCGCGACTCAGAG 59.939 57.143 42.28 34.04 42.54 3.35
3966 4111 1.077123 GTGACTAGTCGCGACTCAGA 58.923 55.000 42.28 25.68 42.54 3.27
3967 4112 0.796927 TGTGACTAGTCGCGACTCAG 59.203 55.000 42.28 33.82 42.66 3.35
3968 4113 1.069432 GTTGTGACTAGTCGCGACTCA 60.069 52.381 42.28 31.02 46.04 3.41
3969 4114 1.604396 GTTGTGACTAGTCGCGACTC 58.396 55.000 42.28 28.88 46.04 3.36
3970 4115 0.110328 CGTTGTGACTAGTCGCGACT 60.110 55.000 40.17 40.17 46.87 4.18
3971 4116 1.662845 GCGTTGTGACTAGTCGCGAC 61.663 60.000 33.40 33.40 46.06 5.19
3972 4117 1.441515 GCGTTGTGACTAGTCGCGA 60.442 57.895 26.76 23.69 42.66 5.87
3973 4118 3.061674 GCGTTGTGACTAGTCGCG 58.938 61.111 26.76 22.04 42.66 5.87
3974 4119 1.344942 CCTGCGTTGTGACTAGTCGC 61.345 60.000 26.18 26.18 45.70 5.19
3975 4120 1.344942 GCCTGCGTTGTGACTAGTCG 61.345 60.000 17.85 7.44 0.00 4.18
3976 4121 0.038159 AGCCTGCGTTGTGACTAGTC 60.038 55.000 16.32 16.32 0.00 2.59
3977 4122 0.038159 GAGCCTGCGTTGTGACTAGT 60.038 55.000 0.00 0.00 0.00 2.57
3978 4123 1.073216 CGAGCCTGCGTTGTGACTAG 61.073 60.000 0.00 0.00 0.00 2.57
3979 4124 1.080772 CGAGCCTGCGTTGTGACTA 60.081 57.895 0.00 0.00 0.00 2.59
3980 4125 2.356313 CGAGCCTGCGTTGTGACT 60.356 61.111 0.00 0.00 0.00 3.41
3981 4126 2.355837 TCGAGCCTGCGTTGTGAC 60.356 61.111 0.00 0.00 0.00 3.67
3982 4127 2.355837 GTCGAGCCTGCGTTGTGA 60.356 61.111 0.00 0.00 0.00 3.58
3983 4128 1.891060 GAAGTCGAGCCTGCGTTGTG 61.891 60.000 0.00 0.00 0.00 3.33
3984 4129 1.664965 GAAGTCGAGCCTGCGTTGT 60.665 57.895 0.00 0.00 0.00 3.32
3985 4130 0.946221 AAGAAGTCGAGCCTGCGTTG 60.946 55.000 0.00 0.00 0.00 4.10
3986 4131 0.667792 GAAGAAGTCGAGCCTGCGTT 60.668 55.000 0.00 0.00 0.00 4.84
3987 4132 1.080434 GAAGAAGTCGAGCCTGCGT 60.080 57.895 0.00 0.00 0.00 5.24
3988 4133 1.807573 GGAAGAAGTCGAGCCTGCG 60.808 63.158 0.00 0.00 0.00 5.18
3989 4134 1.807573 CGGAAGAAGTCGAGCCTGC 60.808 63.158 0.00 0.00 0.00 4.85
3990 4135 0.179150 CTCGGAAGAAGTCGAGCCTG 60.179 60.000 0.00 0.00 44.68 4.85
3991 4136 2.185238 CTCGGAAGAAGTCGAGCCT 58.815 57.895 0.00 0.00 44.68 4.58
3992 4137 4.796225 CTCGGAAGAAGTCGAGCC 57.204 61.111 0.00 0.00 44.68 4.70
3997 4142 1.073768 GCAGCGACTCGGAAGAAGTC 61.074 60.000 0.00 0.00 41.32 3.01
3998 4143 1.080434 GCAGCGACTCGGAAGAAGT 60.080 57.895 0.00 0.00 41.32 3.01
3999 4144 1.807573 GGCAGCGACTCGGAAGAAG 60.808 63.158 0.00 0.00 41.32 2.85
4000 4145 2.261671 GGCAGCGACTCGGAAGAA 59.738 61.111 0.00 0.00 41.32 2.52
4001 4146 3.760035 GGGCAGCGACTCGGAAGA 61.760 66.667 0.00 0.00 39.12 2.87
4002 4147 4.821589 GGGGCAGCGACTCGGAAG 62.822 72.222 0.00 0.00 0.00 3.46
4006 4151 4.504916 CTCTGGGGCAGCGACTCG 62.505 72.222 0.00 0.00 0.00 4.18
4007 4152 4.828925 GCTCTGGGGCAGCGACTC 62.829 72.222 0.00 0.00 0.00 3.36
4012 4157 4.828925 GAGTCGCTCTGGGGCAGC 62.829 72.222 0.00 0.00 0.00 5.25
4013 4158 4.504916 CGAGTCGCTCTGGGGCAG 62.505 72.222 0.00 0.00 0.00 4.85
4035 4180 1.531149 CATGGTTTTTGAGTCGCGACT 59.469 47.619 39.89 39.89 45.84 4.18
4036 4181 1.399727 CCATGGTTTTTGAGTCGCGAC 60.400 52.381 31.30 31.30 0.00 5.19
4037 4182 0.871722 CCATGGTTTTTGAGTCGCGA 59.128 50.000 3.71 3.71 0.00 5.87
4038 4183 0.591170 ACCATGGTTTTTGAGTCGCG 59.409 50.000 13.00 0.00 0.00 5.87
4039 4184 2.607038 GGAACCATGGTTTTTGAGTCGC 60.607 50.000 30.33 14.21 38.60 5.19
4040 4185 2.621055 TGGAACCATGGTTTTTGAGTCG 59.379 45.455 30.33 0.00 38.60 4.18
4041 4186 4.664150 TTGGAACCATGGTTTTTGAGTC 57.336 40.909 30.33 15.99 38.60 3.36
4042 4187 5.428184 TTTTGGAACCATGGTTTTTGAGT 57.572 34.783 30.33 7.18 38.60 3.41
4043 4188 7.441017 TCTATTTTGGAACCATGGTTTTTGAG 58.559 34.615 30.33 19.38 38.60 3.02
4044 4189 7.366847 TCTATTTTGGAACCATGGTTTTTGA 57.633 32.000 30.33 15.97 38.60 2.69
4045 4190 7.877097 TCATCTATTTTGGAACCATGGTTTTTG 59.123 33.333 30.33 14.47 38.60 2.44
4046 4191 7.877612 GTCATCTATTTTGGAACCATGGTTTTT 59.122 33.333 30.33 9.71 38.60 1.94
4047 4192 7.235399 AGTCATCTATTTTGGAACCATGGTTTT 59.765 33.333 30.33 10.55 38.60 2.43
4048 4193 6.725834 AGTCATCTATTTTGGAACCATGGTTT 59.274 34.615 30.33 16.18 38.60 3.27
4049 4194 6.256053 AGTCATCTATTTTGGAACCATGGTT 58.744 36.000 30.23 30.23 41.54 3.67
4050 4195 5.831103 AGTCATCTATTTTGGAACCATGGT 58.169 37.500 13.00 13.00 0.00 3.55
4051 4196 5.887598 TGAGTCATCTATTTTGGAACCATGG 59.112 40.000 11.19 11.19 0.00 3.66
4052 4197 7.121759 AGTTGAGTCATCTATTTTGGAACCATG 59.878 37.037 1.70 0.00 0.00 3.66
4053 4198 7.177878 AGTTGAGTCATCTATTTTGGAACCAT 58.822 34.615 1.70 0.00 0.00 3.55
4054 4199 6.542821 AGTTGAGTCATCTATTTTGGAACCA 58.457 36.000 1.70 0.00 0.00 3.67
4055 4200 7.454260 AAGTTGAGTCATCTATTTTGGAACC 57.546 36.000 4.14 0.00 0.00 3.62
4056 4201 8.352942 ACAAAGTTGAGTCATCTATTTTGGAAC 58.647 33.333 14.35 0.00 40.00 3.62
4057 4202 8.463930 ACAAAGTTGAGTCATCTATTTTGGAA 57.536 30.769 14.35 0.00 40.00 3.53
4058 4203 9.567776 TTACAAAGTTGAGTCATCTATTTTGGA 57.432 29.630 14.35 6.88 40.00 3.53
4059 4204 9.612620 GTTACAAAGTTGAGTCATCTATTTTGG 57.387 33.333 14.35 0.00 40.00 3.28
4064 4209 9.561069 ACAAAGTTACAAAGTTGAGTCATCTAT 57.439 29.630 4.14 0.00 0.00 1.98
4065 4210 8.958119 ACAAAGTTACAAAGTTGAGTCATCTA 57.042 30.769 4.14 0.00 0.00 1.98
4066 4211 7.865706 ACAAAGTTACAAAGTTGAGTCATCT 57.134 32.000 0.00 0.00 0.00 2.90
4067 4212 8.827677 AGTACAAAGTTACAAAGTTGAGTCATC 58.172 33.333 0.00 0.00 0.00 2.92
4068 4213 8.732746 AGTACAAAGTTACAAAGTTGAGTCAT 57.267 30.769 0.00 0.00 0.00 3.06
4069 4214 9.656040 TTAGTACAAAGTTACAAAGTTGAGTCA 57.344 29.630 0.00 0.00 0.00 3.41
4070 4215 9.911980 GTTAGTACAAAGTTACAAAGTTGAGTC 57.088 33.333 0.00 0.00 0.00 3.36
4071 4216 9.662947 AGTTAGTACAAAGTTACAAAGTTGAGT 57.337 29.630 0.00 0.00 0.00 3.41
4095 4240 9.880157 TGACTCAACTTTGTACTAACTTTAAGT 57.120 29.630 0.00 0.00 0.00 2.24
4133 4278 9.003658 CCAAAATAGATGACTCAACTTTGTACT 57.996 33.333 0.00 0.00 0.00 2.73
4134 4279 8.999431 TCCAAAATAGATGACTCAACTTTGTAC 58.001 33.333 0.00 0.00 0.00 2.90
4135 4280 9.567776 TTCCAAAATAGATGACTCAACTTTGTA 57.432 29.630 0.00 0.00 0.00 2.41
4136 4281 8.352942 GTTCCAAAATAGATGACTCAACTTTGT 58.647 33.333 0.00 0.00 0.00 2.83
4137 4282 7.535258 CGTTCCAAAATAGATGACTCAACTTTG 59.465 37.037 0.00 0.00 0.00 2.77
4138 4283 7.308589 CCGTTCCAAAATAGATGACTCAACTTT 60.309 37.037 0.00 0.00 0.00 2.66
4139 4284 6.149474 CCGTTCCAAAATAGATGACTCAACTT 59.851 38.462 0.00 0.00 0.00 2.66
4140 4285 5.643777 CCGTTCCAAAATAGATGACTCAACT 59.356 40.000 0.00 0.00 0.00 3.16
4141 4286 5.642063 TCCGTTCCAAAATAGATGACTCAAC 59.358 40.000 0.00 0.00 0.00 3.18
4142 4287 5.800296 TCCGTTCCAAAATAGATGACTCAA 58.200 37.500 0.00 0.00 0.00 3.02
4143 4288 5.414789 TCCGTTCCAAAATAGATGACTCA 57.585 39.130 0.00 0.00 0.00 3.41
4144 4289 4.811557 CCTCCGTTCCAAAATAGATGACTC 59.188 45.833 0.00 0.00 0.00 3.36
4145 4290 4.384208 CCCTCCGTTCCAAAATAGATGACT 60.384 45.833 0.00 0.00 0.00 3.41
4146 4291 3.877508 CCCTCCGTTCCAAAATAGATGAC 59.122 47.826 0.00 0.00 0.00 3.06
4147 4292 3.778075 TCCCTCCGTTCCAAAATAGATGA 59.222 43.478 0.00 0.00 0.00 2.92
4148 4293 4.130118 CTCCCTCCGTTCCAAAATAGATG 58.870 47.826 0.00 0.00 0.00 2.90
4149 4294 3.780850 ACTCCCTCCGTTCCAAAATAGAT 59.219 43.478 0.00 0.00 0.00 1.98
4150 4295 3.178865 ACTCCCTCCGTTCCAAAATAGA 58.821 45.455 0.00 0.00 0.00 1.98
4151 4296 3.629142 ACTCCCTCCGTTCCAAAATAG 57.371 47.619 0.00 0.00 0.00 1.73
4157 4302 4.736611 ATATAGTACTCCCTCCGTTCCA 57.263 45.455 0.00 0.00 0.00 3.53
4205 4350 5.248380 AGCTACTCCTTTCAAAAGATGGT 57.752 39.130 4.06 3.11 38.28 3.55
4361 4510 4.514066 ACAAATTTGAAGGTACAGTCCGTC 59.486 41.667 24.64 0.00 36.71 4.79
4472 4621 8.522830 TCCATTCCAAAATAGATGAAGTTTCAC 58.477 33.333 0.00 0.00 40.49 3.18
4495 4644 3.010138 CCTCAATTGGTTTACTCCCTCCA 59.990 47.826 5.42 0.00 0.00 3.86
4644 4934 5.222463 ACCTAAACCCCTGAACAATATTGGT 60.222 40.000 19.37 13.48 0.00 3.67
4740 5030 1.832883 AGACACACCAACAAGCAACA 58.167 45.000 0.00 0.00 0.00 3.33
4791 5083 3.003897 GCAACAAACCTAACGTCAATGGA 59.996 43.478 0.00 0.00 0.00 3.41
5351 5643 8.747538 AAGAGTCTTACACTGTAAAAATGGTT 57.252 30.769 2.75 0.00 34.41 3.67
5413 5705 4.137543 TCTCTTCTTCTTTTCCCTGCAAC 58.862 43.478 0.00 0.00 0.00 4.17
5569 5861 2.515926 TCTCAACGCTATCCAGATGC 57.484 50.000 0.00 0.00 0.00 3.91
5684 5998 7.962964 AGAAGTGAAGAAAACGATACATTCA 57.037 32.000 0.00 0.00 0.00 2.57
5792 6115 6.542005 ACACACAGATTCAGATAAACAACACA 59.458 34.615 0.00 0.00 0.00 3.72
5842 6165 8.811017 TCTATTATGATGATTTCCTCCTCAGAC 58.189 37.037 0.00 0.00 32.86 3.51
5850 6173 8.776119 CCCCTGTATCTATTATGATGATTTCCT 58.224 37.037 0.00 0.00 0.00 3.36
5897 6220 5.417580 AGCTAATTGATAAGTTTTGCGGGAA 59.582 36.000 0.00 0.00 0.00 3.97
5927 6250 7.951530 AAATTTAGGCAAGTGATGAACAAAG 57.048 32.000 0.00 0.00 0.00 2.77
5952 6275 9.443323 ACAACAGCATAGTACAAATGTAATGTA 57.557 29.630 3.95 0.00 30.89 2.29
5959 6282 4.727734 GCGGACAACAGCATAGTACAAATG 60.728 45.833 0.00 0.00 37.19 2.32
5974 6297 0.532196 GGTATGGGCTAGCGGACAAC 60.532 60.000 9.00 3.11 0.00 3.32
6039 6396 9.914834 TTTAGTACTTGCATTTTATCTGGGTAT 57.085 29.630 0.00 0.00 0.00 2.73
6070 6427 5.242393 CCTGGCATCATGTAAAATTCCCTAG 59.758 44.000 0.00 0.00 0.00 3.02
6074 6432 5.827797 TCTACCTGGCATCATGTAAAATTCC 59.172 40.000 0.00 0.00 0.00 3.01
6115 6473 6.223351 AGCTTGAAATACTACTGGTAGGTC 57.777 41.667 11.73 4.99 37.49 3.85
6226 6588 5.212194 CGGAAAGATATGGCGTAAAAATGG 58.788 41.667 0.00 0.00 0.00 3.16
6251 6613 2.525629 TCTTCAGGGTGCGTGGGA 60.526 61.111 0.00 0.00 0.00 4.37
6295 6657 1.983119 GACCCCGGATTGGATGCTGA 61.983 60.000 0.73 0.00 42.00 4.26


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.