Multiple sequence alignment - TraesCS2A01G205900

Loading Multiple Alignment...

Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS2A01G205900 chr2A 100.000 2219 0 0 1 2219 184553026 184550808 0.000000e+00 4098.0
1 TraesCS2A01G205900 chr2A 93.750 48 3 0 1166 1213 748823189 748823236 3.060000e-09 73.1
2 TraesCS2A01G205900 chr2A 89.091 55 6 0 1166 1220 748688726 748688780 3.950000e-08 69.4
3 TraesCS2A01G205900 chr2B 91.742 993 60 13 338 1324 231658531 231657555 0.000000e+00 1360.0
4 TraesCS2A01G205900 chr2B 83.939 716 74 16 1321 2026 231656922 231656238 0.000000e+00 647.0
5 TraesCS2A01G205900 chr2B 89.091 55 6 0 1166 1220 754550526 754550580 3.950000e-08 69.4
6 TraesCS2A01G205900 chr2D 91.414 990 58 15 381 1357 166136238 166137213 0.000000e+00 1332.0
7 TraesCS2A01G205900 chr2D 87.700 813 78 15 1388 2186 166138322 166139126 0.000000e+00 928.0
8 TraesCS2A01G205900 chr2D 91.489 94 5 1 142 235 166136137 166136227 2.310000e-25 126.0
9 TraesCS2A01G205900 chr2D 93.750 48 3 0 1166 1213 618132788 618132835 3.060000e-09 73.1


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS2A01G205900 chr2A 184550808 184553026 2218 True 4098.000000 4098 100.0000 1 2219 1 chr2A.!!$R1 2218
1 TraesCS2A01G205900 chr2B 231656238 231658531 2293 True 1003.500000 1360 87.8405 338 2026 2 chr2B.!!$R1 1688
2 TraesCS2A01G205900 chr2D 166136137 166139126 2989 False 795.333333 1332 90.2010 142 2186 3 chr2D.!!$F2 2044

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
85 86 0.187361 AAGGCTGGCCCAACAACTAA 59.813 50.0 8.11 0.0 36.58 2.24 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1501 3250 1.179152 TCGGTATTCGAGCCAAGTGA 58.821 50.0 4.14 0.0 43.74 3.41 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
17 18 2.468532 CGCGACGCAACTGGTAAC 59.531 61.111 21.35 0.00 0.00 2.50
18 19 2.019951 CGCGACGCAACTGGTAACT 61.020 57.895 21.35 0.00 37.61 2.24
19 20 1.554042 CGCGACGCAACTGGTAACTT 61.554 55.000 21.35 0.00 37.61 2.66
20 21 1.421382 GCGACGCAACTGGTAACTTA 58.579 50.000 16.42 0.00 37.61 2.24
21 22 1.997606 GCGACGCAACTGGTAACTTAT 59.002 47.619 16.42 0.00 37.61 1.73
22 23 2.222729 GCGACGCAACTGGTAACTTATG 60.223 50.000 16.42 0.00 37.61 1.90
23 24 2.222729 CGACGCAACTGGTAACTTATGC 60.223 50.000 0.00 0.00 36.14 3.14
24 25 2.739913 GACGCAACTGGTAACTTATGCA 59.260 45.455 0.00 0.00 38.29 3.96
25 26 2.482721 ACGCAACTGGTAACTTATGCAC 59.517 45.455 0.00 0.00 38.29 4.57
26 27 2.742053 CGCAACTGGTAACTTATGCACT 59.258 45.455 0.00 0.00 38.29 4.40
27 28 3.188460 CGCAACTGGTAACTTATGCACTT 59.812 43.478 0.00 0.00 38.29 3.16
28 29 4.390603 CGCAACTGGTAACTTATGCACTTA 59.609 41.667 0.00 0.00 38.29 2.24
29 30 5.064707 CGCAACTGGTAACTTATGCACTTAT 59.935 40.000 0.00 0.00 38.29 1.73
30 31 6.487103 GCAACTGGTAACTTATGCACTTATC 58.513 40.000 0.00 0.00 38.28 1.75
31 32 6.316390 GCAACTGGTAACTTATGCACTTATCT 59.684 38.462 0.00 0.00 38.28 1.98
32 33 7.148239 GCAACTGGTAACTTATGCACTTATCTT 60.148 37.037 0.00 0.00 38.28 2.40
33 34 8.391106 CAACTGGTAACTTATGCACTTATCTTC 58.609 37.037 0.00 0.00 37.61 2.87
34 35 7.620880 ACTGGTAACTTATGCACTTATCTTCA 58.379 34.615 0.00 0.00 37.61 3.02
35 36 7.766278 ACTGGTAACTTATGCACTTATCTTCAG 59.234 37.037 0.00 0.00 37.61 3.02
36 37 7.620880 TGGTAACTTATGCACTTATCTTCAGT 58.379 34.615 0.00 0.00 37.61 3.41
37 38 7.764443 TGGTAACTTATGCACTTATCTTCAGTC 59.236 37.037 0.00 0.00 37.61 3.51
38 39 7.224949 GGTAACTTATGCACTTATCTTCAGTCC 59.775 40.741 0.00 0.00 0.00 3.85
39 40 6.552445 ACTTATGCACTTATCTTCAGTCCT 57.448 37.500 0.00 0.00 0.00 3.85
40 41 6.951971 ACTTATGCACTTATCTTCAGTCCTT 58.048 36.000 0.00 0.00 0.00 3.36
41 42 6.820656 ACTTATGCACTTATCTTCAGTCCTTG 59.179 38.462 0.00 0.00 0.00 3.61
42 43 3.338249 TGCACTTATCTTCAGTCCTTGC 58.662 45.455 0.00 0.00 0.00 4.01
43 44 2.680339 GCACTTATCTTCAGTCCTTGCC 59.320 50.000 0.00 0.00 0.00 4.52
44 45 3.869912 GCACTTATCTTCAGTCCTTGCCA 60.870 47.826 0.00 0.00 0.00 4.92
45 46 3.937706 CACTTATCTTCAGTCCTTGCCAG 59.062 47.826 0.00 0.00 0.00 4.85
46 47 3.584848 ACTTATCTTCAGTCCTTGCCAGT 59.415 43.478 0.00 0.00 0.00 4.00
47 48 4.042187 ACTTATCTTCAGTCCTTGCCAGTT 59.958 41.667 0.00 0.00 0.00 3.16
48 49 3.515602 ATCTTCAGTCCTTGCCAGTTT 57.484 42.857 0.00 0.00 0.00 2.66
49 50 4.640771 ATCTTCAGTCCTTGCCAGTTTA 57.359 40.909 0.00 0.00 0.00 2.01
50 51 4.431416 TCTTCAGTCCTTGCCAGTTTAA 57.569 40.909 0.00 0.00 0.00 1.52
51 52 4.985538 TCTTCAGTCCTTGCCAGTTTAAT 58.014 39.130 0.00 0.00 0.00 1.40
52 53 5.385198 TCTTCAGTCCTTGCCAGTTTAATT 58.615 37.500 0.00 0.00 0.00 1.40
53 54 6.539173 TCTTCAGTCCTTGCCAGTTTAATTA 58.461 36.000 0.00 0.00 0.00 1.40
54 55 6.430000 TCTTCAGTCCTTGCCAGTTTAATTAC 59.570 38.462 0.00 0.00 0.00 1.89
55 56 5.876357 TCAGTCCTTGCCAGTTTAATTACT 58.124 37.500 0.00 0.00 0.00 2.24
56 57 5.705441 TCAGTCCTTGCCAGTTTAATTACTG 59.295 40.000 1.91 1.91 44.07 2.74
57 58 5.473504 CAGTCCTTGCCAGTTTAATTACTGT 59.526 40.000 7.43 0.00 43.17 3.55
58 59 6.016276 CAGTCCTTGCCAGTTTAATTACTGTT 60.016 38.462 7.43 0.00 43.17 3.16
59 60 7.174253 CAGTCCTTGCCAGTTTAATTACTGTTA 59.826 37.037 7.43 0.00 43.17 2.41
60 61 7.722285 AGTCCTTGCCAGTTTAATTACTGTTAA 59.278 33.333 7.43 2.50 43.17 2.01
61 62 8.520351 GTCCTTGCCAGTTTAATTACTGTTAAT 58.480 33.333 7.43 0.00 43.17 1.40
62 63 9.742144 TCCTTGCCAGTTTAATTACTGTTAATA 57.258 29.630 7.43 0.00 43.17 0.98
65 66 9.523168 TTGCCAGTTTAATTACTGTTAATAGGT 57.477 29.630 4.12 0.00 43.17 3.08
73 74 9.841295 TTAATTACTGTTAATAGGTAAGGCTGG 57.159 33.333 4.12 0.00 0.00 4.85
74 75 4.152284 ACTGTTAATAGGTAAGGCTGGC 57.848 45.455 4.12 0.00 0.00 4.85
75 76 3.118000 ACTGTTAATAGGTAAGGCTGGCC 60.118 47.826 3.00 3.00 0.00 5.36
76 77 2.173996 TGTTAATAGGTAAGGCTGGCCC 59.826 50.000 8.11 0.00 36.58 5.80
77 78 2.173996 GTTAATAGGTAAGGCTGGCCCA 59.826 50.000 8.11 0.00 36.58 5.36
78 79 1.304891 AATAGGTAAGGCTGGCCCAA 58.695 50.000 8.11 0.00 36.58 4.12
79 80 0.551396 ATAGGTAAGGCTGGCCCAAC 59.449 55.000 8.11 6.69 36.58 3.77
80 81 0.842905 TAGGTAAGGCTGGCCCAACA 60.843 55.000 8.11 0.00 36.58 3.33
81 82 1.228737 GGTAAGGCTGGCCCAACAA 60.229 57.895 8.11 0.00 36.58 2.83
82 83 1.532604 GGTAAGGCTGGCCCAACAAC 61.533 60.000 8.11 0.21 36.58 3.32
83 84 0.539669 GTAAGGCTGGCCCAACAACT 60.540 55.000 8.11 0.00 36.58 3.16
84 85 1.068948 TAAGGCTGGCCCAACAACTA 58.931 50.000 8.11 0.00 36.58 2.24
85 86 0.187361 AAGGCTGGCCCAACAACTAA 59.813 50.000 8.11 0.00 36.58 2.24
86 87 0.409484 AGGCTGGCCCAACAACTAAT 59.591 50.000 8.11 0.00 36.58 1.73
87 88 0.817654 GGCTGGCCCAACAACTAATC 59.182 55.000 0.00 0.00 0.00 1.75
88 89 0.817654 GCTGGCCCAACAACTAATCC 59.182 55.000 0.00 0.00 0.00 3.01
89 90 1.616994 GCTGGCCCAACAACTAATCCT 60.617 52.381 0.00 0.00 0.00 3.24
90 91 2.356741 GCTGGCCCAACAACTAATCCTA 60.357 50.000 0.00 0.00 0.00 2.94
91 92 3.545703 CTGGCCCAACAACTAATCCTAG 58.454 50.000 0.00 0.00 0.00 3.02
92 93 2.916934 TGGCCCAACAACTAATCCTAGT 59.083 45.455 0.00 0.00 40.25 2.57
94 95 4.536888 TGGCCCAACAACTAATCCTAGTTA 59.463 41.667 0.00 0.00 44.89 2.24
95 96 5.014333 TGGCCCAACAACTAATCCTAGTTAA 59.986 40.000 0.00 0.00 44.89 2.01
96 97 6.127101 GGCCCAACAACTAATCCTAGTTAAT 58.873 40.000 0.00 0.00 44.89 1.40
97 98 6.039382 GGCCCAACAACTAATCCTAGTTAATG 59.961 42.308 0.00 1.31 44.89 1.90
98 99 6.826741 GCCCAACAACTAATCCTAGTTAATGA 59.173 38.462 0.00 0.00 44.89 2.57
99 100 7.338449 GCCCAACAACTAATCCTAGTTAATGAA 59.662 37.037 0.00 0.00 44.89 2.57
100 101 8.674607 CCCAACAACTAATCCTAGTTAATGAAC 58.325 37.037 0.00 0.00 44.89 3.18
101 102 9.226606 CCAACAACTAATCCTAGTTAATGAACA 57.773 33.333 0.00 0.00 44.89 3.18
119 120 8.915871 AATGAACAATATAAACTGCACATGAC 57.084 30.769 0.00 0.00 0.00 3.06
120 121 6.541969 TGAACAATATAAACTGCACATGACG 58.458 36.000 0.00 0.00 0.00 4.35
121 122 6.148645 TGAACAATATAAACTGCACATGACGT 59.851 34.615 0.00 0.00 0.00 4.34
122 123 6.106877 ACAATATAAACTGCACATGACGTC 57.893 37.500 9.11 9.11 0.00 4.34
123 124 5.064707 ACAATATAAACTGCACATGACGTCC 59.935 40.000 14.12 0.00 0.00 4.79
124 125 2.535012 TAAACTGCACATGACGTCCA 57.465 45.000 14.12 1.94 0.00 4.02
125 126 1.674359 AAACTGCACATGACGTCCAA 58.326 45.000 14.12 0.00 0.00 3.53
126 127 1.674359 AACTGCACATGACGTCCAAA 58.326 45.000 14.12 0.00 0.00 3.28
127 128 1.674359 ACTGCACATGACGTCCAAAA 58.326 45.000 14.12 0.00 0.00 2.44
128 129 2.229792 ACTGCACATGACGTCCAAAAT 58.770 42.857 14.12 0.00 0.00 1.82
129 130 2.622942 ACTGCACATGACGTCCAAAATT 59.377 40.909 14.12 0.00 0.00 1.82
130 131 3.818210 ACTGCACATGACGTCCAAAATTA 59.182 39.130 14.12 0.00 0.00 1.40
131 132 4.458989 ACTGCACATGACGTCCAAAATTAT 59.541 37.500 14.12 0.00 0.00 1.28
132 133 5.645929 ACTGCACATGACGTCCAAAATTATA 59.354 36.000 14.12 0.00 0.00 0.98
133 134 5.874831 TGCACATGACGTCCAAAATTATAC 58.125 37.500 14.12 0.00 0.00 1.47
134 135 5.163703 TGCACATGACGTCCAAAATTATACC 60.164 40.000 14.12 0.00 0.00 2.73
135 136 5.065988 GCACATGACGTCCAAAATTATACCT 59.934 40.000 14.12 0.00 0.00 3.08
136 137 6.486248 CACATGACGTCCAAAATTATACCTG 58.514 40.000 14.12 0.00 0.00 4.00
137 138 6.315144 CACATGACGTCCAAAATTATACCTGA 59.685 38.462 14.12 0.00 0.00 3.86
138 139 6.315393 ACATGACGTCCAAAATTATACCTGAC 59.685 38.462 14.12 0.00 0.00 3.51
139 140 4.865925 TGACGTCCAAAATTATACCTGACG 59.134 41.667 14.12 7.50 46.73 4.35
140 141 4.186159 ACGTCCAAAATTATACCTGACGG 58.814 43.478 12.84 0.00 45.91 4.79
173 174 5.616488 TGTTGATTCTTTAGCCGGTTAAC 57.384 39.130 10.63 0.00 0.00 2.01
174 175 5.064558 TGTTGATTCTTTAGCCGGTTAACA 58.935 37.500 10.63 2.59 0.00 2.41
175 176 5.531659 TGTTGATTCTTTAGCCGGTTAACAA 59.468 36.000 10.63 8.40 0.00 2.83
177 178 7.390996 TGTTGATTCTTTAGCCGGTTAACAATA 59.609 33.333 10.63 6.92 0.00 1.90
178 179 8.403236 GTTGATTCTTTAGCCGGTTAACAATAT 58.597 33.333 10.63 2.51 0.00 1.28
179 180 8.514330 TGATTCTTTAGCCGGTTAACAATATT 57.486 30.769 10.63 0.00 0.00 1.28
180 181 8.402472 TGATTCTTTAGCCGGTTAACAATATTG 58.598 33.333 10.63 14.01 0.00 1.90
181 182 6.126568 TCTTTAGCCGGTTAACAATATTGC 57.873 37.500 15.48 0.00 0.00 3.56
182 183 5.883673 TCTTTAGCCGGTTAACAATATTGCT 59.116 36.000 15.48 5.96 0.00 3.91
220 221 1.812571 CAACTAAGCAAAGGCATCCGT 59.187 47.619 0.00 0.00 44.61 4.69
221 222 1.453155 ACTAAGCAAAGGCATCCGTG 58.547 50.000 0.00 0.00 44.61 4.94
235 236 0.756294 TCCGTGAGAGCTCCAAAACA 59.244 50.000 10.93 0.61 0.00 2.83
236 237 0.868406 CCGTGAGAGCTCCAAAACAC 59.132 55.000 10.93 11.86 0.00 3.32
237 238 1.541233 CCGTGAGAGCTCCAAAACACT 60.541 52.381 10.93 0.00 0.00 3.55
238 239 1.528586 CGTGAGAGCTCCAAAACACTG 59.471 52.381 10.93 6.58 0.00 3.66
239 240 2.803133 CGTGAGAGCTCCAAAACACTGA 60.803 50.000 10.93 0.00 0.00 3.41
240 241 3.206150 GTGAGAGCTCCAAAACACTGAA 58.794 45.455 10.93 0.00 0.00 3.02
241 242 3.627577 GTGAGAGCTCCAAAACACTGAAA 59.372 43.478 10.93 0.00 0.00 2.69
242 243 3.879295 TGAGAGCTCCAAAACACTGAAAG 59.121 43.478 10.93 0.00 42.29 2.62
243 244 4.130118 GAGAGCTCCAAAACACTGAAAGA 58.870 43.478 10.93 0.00 37.43 2.52
244 245 4.133078 AGAGCTCCAAAACACTGAAAGAG 58.867 43.478 10.93 0.00 37.43 2.85
245 246 4.130118 GAGCTCCAAAACACTGAAAGAGA 58.870 43.478 0.87 0.00 37.43 3.10
246 247 3.879892 AGCTCCAAAACACTGAAAGAGAC 59.120 43.478 0.00 0.00 37.43 3.36
247 248 3.303395 GCTCCAAAACACTGAAAGAGACG 60.303 47.826 0.00 0.00 37.43 4.18
248 249 3.869065 TCCAAAACACTGAAAGAGACGT 58.131 40.909 0.00 0.00 37.43 4.34
249 250 3.621268 TCCAAAACACTGAAAGAGACGTG 59.379 43.478 0.00 0.00 37.43 4.49
250 251 3.354397 CAAAACACTGAAAGAGACGTGC 58.646 45.455 0.00 0.00 37.43 5.34
251 252 2.309528 AACACTGAAAGAGACGTGCA 57.690 45.000 0.00 0.00 37.43 4.57
252 253 2.309528 ACACTGAAAGAGACGTGCAA 57.690 45.000 0.00 0.00 37.43 4.08
253 254 2.627945 ACACTGAAAGAGACGTGCAAA 58.372 42.857 0.00 0.00 37.43 3.68
254 255 3.006940 ACACTGAAAGAGACGTGCAAAA 58.993 40.909 0.00 0.00 37.43 2.44
255 256 3.181510 ACACTGAAAGAGACGTGCAAAAC 60.182 43.478 0.00 0.00 37.43 2.43
256 257 3.063997 CACTGAAAGAGACGTGCAAAACT 59.936 43.478 0.00 0.00 37.43 2.66
257 258 4.270084 CACTGAAAGAGACGTGCAAAACTA 59.730 41.667 0.00 0.00 37.43 2.24
258 259 4.873827 ACTGAAAGAGACGTGCAAAACTAA 59.126 37.500 0.00 0.00 37.43 2.24
259 260 5.527582 ACTGAAAGAGACGTGCAAAACTAAT 59.472 36.000 0.00 0.00 37.43 1.73
260 261 6.704493 ACTGAAAGAGACGTGCAAAACTAATA 59.296 34.615 0.00 0.00 37.43 0.98
261 262 7.387948 ACTGAAAGAGACGTGCAAAACTAATAT 59.612 33.333 0.00 0.00 37.43 1.28
262 263 7.518161 TGAAAGAGACGTGCAAAACTAATATG 58.482 34.615 0.00 0.00 0.00 1.78
263 264 7.172532 TGAAAGAGACGTGCAAAACTAATATGT 59.827 33.333 0.00 0.00 0.00 2.29
264 265 8.542497 AAAGAGACGTGCAAAACTAATATGTA 57.458 30.769 0.00 0.00 0.00 2.29
265 266 7.521509 AGAGACGTGCAAAACTAATATGTAC 57.478 36.000 0.00 0.00 0.00 2.90
266 267 7.321153 AGAGACGTGCAAAACTAATATGTACT 58.679 34.615 0.00 0.00 0.00 2.73
267 268 7.275779 AGAGACGTGCAAAACTAATATGTACTG 59.724 37.037 0.00 0.00 0.00 2.74
268 269 5.864986 ACGTGCAAAACTAATATGTACTGC 58.135 37.500 0.00 0.00 0.00 4.40
269 270 5.163794 ACGTGCAAAACTAATATGTACTGCC 60.164 40.000 0.00 0.00 30.98 4.85
270 271 5.064707 CGTGCAAAACTAATATGTACTGCCT 59.935 40.000 0.00 0.00 30.98 4.75
271 272 6.487103 GTGCAAAACTAATATGTACTGCCTC 58.513 40.000 0.00 0.00 30.98 4.70
272 273 5.588648 TGCAAAACTAATATGTACTGCCTCC 59.411 40.000 0.00 0.00 30.98 4.30
273 274 5.277345 GCAAAACTAATATGTACTGCCTCCG 60.277 44.000 0.00 0.00 0.00 4.63
274 275 5.609533 AAACTAATATGTACTGCCTCCGT 57.390 39.130 0.00 0.00 0.00 4.69
275 276 6.720112 AAACTAATATGTACTGCCTCCGTA 57.280 37.500 0.00 0.00 0.00 4.02
276 277 6.720112 AACTAATATGTACTGCCTCCGTAA 57.280 37.500 0.00 0.00 0.00 3.18
277 278 6.720112 ACTAATATGTACTGCCTCCGTAAA 57.280 37.500 0.00 0.00 0.00 2.01
278 279 6.510536 ACTAATATGTACTGCCTCCGTAAAC 58.489 40.000 0.00 0.00 0.00 2.01
279 280 5.609533 AATATGTACTGCCTCCGTAAACT 57.390 39.130 0.00 0.00 0.00 2.66
280 281 6.720112 AATATGTACTGCCTCCGTAAACTA 57.280 37.500 0.00 0.00 0.00 2.24
281 282 6.912951 ATATGTACTGCCTCCGTAAACTAT 57.087 37.500 0.00 0.00 0.00 2.12
282 283 4.644103 TGTACTGCCTCCGTAAACTATC 57.356 45.455 0.00 0.00 0.00 2.08
283 284 3.382546 TGTACTGCCTCCGTAAACTATCC 59.617 47.826 0.00 0.00 0.00 2.59
284 285 2.748388 ACTGCCTCCGTAAACTATCCT 58.252 47.619 0.00 0.00 0.00 3.24
285 286 3.907221 ACTGCCTCCGTAAACTATCCTA 58.093 45.455 0.00 0.00 0.00 2.94
286 287 4.284178 ACTGCCTCCGTAAACTATCCTAA 58.716 43.478 0.00 0.00 0.00 2.69
287 288 4.713321 ACTGCCTCCGTAAACTATCCTAAA 59.287 41.667 0.00 0.00 0.00 1.85
288 289 5.365895 ACTGCCTCCGTAAACTATCCTAAAT 59.634 40.000 0.00 0.00 0.00 1.40
289 290 6.552350 ACTGCCTCCGTAAACTATCCTAAATA 59.448 38.462 0.00 0.00 0.00 1.40
290 291 7.234988 ACTGCCTCCGTAAACTATCCTAAATAT 59.765 37.037 0.00 0.00 0.00 1.28
291 292 7.970102 TGCCTCCGTAAACTATCCTAAATATT 58.030 34.615 0.00 0.00 0.00 1.28
292 293 7.876068 TGCCTCCGTAAACTATCCTAAATATTG 59.124 37.037 0.00 0.00 0.00 1.90
293 294 7.148457 GCCTCCGTAAACTATCCTAAATATTGC 60.148 40.741 0.00 0.00 0.00 3.56
294 295 8.095169 CCTCCGTAAACTATCCTAAATATTGCT 58.905 37.037 0.00 0.00 0.00 3.91
297 298 9.367444 CCGTAAACTATCCTAAATATTGCTAGG 57.633 37.037 6.82 6.82 36.74 3.02
298 299 9.367444 CGTAAACTATCCTAAATATTGCTAGGG 57.633 37.037 11.65 1.69 36.17 3.53
306 307 8.506196 TCCTAAATATTGCTAGGGAATAGTGT 57.494 34.615 11.65 0.00 36.17 3.55
307 308 9.610104 TCCTAAATATTGCTAGGGAATAGTGTA 57.390 33.333 11.65 0.00 36.17 2.90
308 309 9.877178 CCTAAATATTGCTAGGGAATAGTGTAG 57.123 37.037 5.57 0.00 32.46 2.74
315 316 7.966339 TGCTAGGGAATAGTGTAGTAAAAGA 57.034 36.000 0.00 0.00 33.65 2.52
316 317 8.548880 TGCTAGGGAATAGTGTAGTAAAAGAT 57.451 34.615 0.00 0.00 33.65 2.40
317 318 8.639761 TGCTAGGGAATAGTGTAGTAAAAGATC 58.360 37.037 0.00 0.00 33.65 2.75
318 319 8.862085 GCTAGGGAATAGTGTAGTAAAAGATCT 58.138 37.037 0.00 0.00 33.65 2.75
344 345 5.579564 AGATCACTAAAAGGGAGTACGTC 57.420 43.478 0.00 0.00 26.79 4.34
378 379 9.974980 AAACTGTTTTTCAACTAGTTTCTTGAA 57.025 25.926 5.07 4.45 38.49 2.69
398 401 3.932545 ATAATAGCAGAGCTCCTGTCG 57.067 47.619 10.93 0.00 44.71 4.35
491 497 2.955614 TGGCAAACTAGTACGAAGAGC 58.044 47.619 0.00 6.11 0.00 4.09
502 508 0.824759 ACGAAGAGCTGTACCCATCC 59.175 55.000 0.00 0.00 0.00 3.51
538 544 6.377327 TTGACAATGTCAGAGGAAAAGAAC 57.623 37.500 16.10 0.00 43.69 3.01
584 590 4.503991 GCTCGGATTAGGATGAAGTTCCAT 60.504 45.833 0.00 0.00 38.32 3.41
611 617 4.081087 AGCACGGTTAGAACTTATCCACAT 60.081 41.667 0.00 0.00 0.00 3.21
928 959 3.722147 TGAGAGACAGACTTTGAGTTGC 58.278 45.455 0.00 0.00 0.00 4.17
935 966 3.134804 ACAGACTTTGAGTTGCAGGTAGT 59.865 43.478 0.00 0.00 0.00 2.73
936 967 3.496130 CAGACTTTGAGTTGCAGGTAGTG 59.504 47.826 0.00 0.00 0.00 2.74
937 968 2.808543 GACTTTGAGTTGCAGGTAGTGG 59.191 50.000 0.00 0.00 0.00 4.00
938 969 2.438021 ACTTTGAGTTGCAGGTAGTGGA 59.562 45.455 0.00 0.00 0.00 4.02
939 970 3.118038 ACTTTGAGTTGCAGGTAGTGGAA 60.118 43.478 0.00 0.00 33.36 3.53
967 998 5.651139 TGGAAGTAGAACTAGCACGTATCTT 59.349 40.000 0.00 0.00 0.00 2.40
968 999 6.152323 TGGAAGTAGAACTAGCACGTATCTTT 59.848 38.462 0.00 0.00 0.00 2.52
969 1000 7.034397 GGAAGTAGAACTAGCACGTATCTTTT 58.966 38.462 0.00 0.00 0.00 2.27
970 1001 7.544915 GGAAGTAGAACTAGCACGTATCTTTTT 59.455 37.037 0.00 0.00 0.00 1.94
971 1002 7.813852 AGTAGAACTAGCACGTATCTTTTTG 57.186 36.000 0.00 0.00 0.00 2.44
972 1003 7.600065 AGTAGAACTAGCACGTATCTTTTTGA 58.400 34.615 0.00 0.00 0.00 2.69
973 1004 6.952935 AGAACTAGCACGTATCTTTTTGAG 57.047 37.500 0.00 0.00 0.00 3.02
974 1005 6.688578 AGAACTAGCACGTATCTTTTTGAGA 58.311 36.000 0.00 0.00 39.13 3.27
975 1006 7.324178 AGAACTAGCACGTATCTTTTTGAGAT 58.676 34.615 0.00 0.00 46.74 2.75
976 1007 7.489757 AGAACTAGCACGTATCTTTTTGAGATC 59.510 37.037 0.00 0.00 44.04 2.75
977 1008 6.868622 ACTAGCACGTATCTTTTTGAGATCT 58.131 36.000 0.00 0.00 44.04 2.75
978 1009 6.975772 ACTAGCACGTATCTTTTTGAGATCTC 59.024 38.462 16.21 16.21 44.04 2.75
979 1010 5.971763 AGCACGTATCTTTTTGAGATCTCT 58.028 37.500 22.95 4.05 44.04 3.10
980 1011 7.101652 AGCACGTATCTTTTTGAGATCTCTA 57.898 36.000 22.95 13.48 44.04 2.43
981 1012 7.721402 AGCACGTATCTTTTTGAGATCTCTAT 58.279 34.615 22.95 9.54 44.04 1.98
982 1013 7.865385 AGCACGTATCTTTTTGAGATCTCTATC 59.135 37.037 22.95 0.00 44.04 2.08
983 1014 7.865385 GCACGTATCTTTTTGAGATCTCTATCT 59.135 37.037 22.95 4.93 44.04 1.98
1047 1078 2.284625 ATGGCGGTGACTCTGGGA 60.285 61.111 0.00 0.00 0.00 4.37
1156 1187 1.215647 GTCAAGGTCGATGGCGTCT 59.784 57.895 5.00 0.00 38.98 4.18
1194 1225 1.409064 TCGCTGAGGATGGTCATGTAC 59.591 52.381 0.00 0.00 0.00 2.90
1203 1234 3.071580 GGTCATGTACCTCAGCTGC 57.928 57.895 9.47 0.00 45.75 5.25
1266 1297 3.127895 TGACTTTTCTTTTGACACGGGTG 59.872 43.478 0.00 0.00 0.00 4.61
1347 2017 7.907214 ACTATTATTGAATTCATACTCCGGC 57.093 36.000 9.40 0.00 0.00 6.13
1356 3104 4.497291 TTCATACTCCGGCCAATTACTT 57.503 40.909 2.24 0.00 0.00 2.24
1357 3105 4.067972 TCATACTCCGGCCAATTACTTC 57.932 45.455 2.24 0.00 0.00 3.01
1362 3110 3.892588 ACTCCGGCCAATTACTTCAAAAA 59.107 39.130 2.24 0.00 0.00 1.94
1441 3189 4.995487 AGCTTCTTTAGTCCTTAAACGTGG 59.005 41.667 0.00 0.00 0.00 4.94
1447 3195 1.004679 TCCTTAAACGTGGGACCGC 60.005 57.895 0.00 0.00 0.00 5.68
1453 3201 2.444700 AAACGTGGGACCGCTGTAGG 62.445 60.000 0.00 0.00 37.30 3.18
1462 3210 2.622011 CCGCTGTAGGCCGCAAAAA 61.622 57.895 0.00 0.00 37.74 1.94
1496 3245 4.482386 CATGTTGGCAGAATCTTGAACTG 58.518 43.478 0.00 0.00 35.14 3.16
1497 3246 2.886523 TGTTGGCAGAATCTTGAACTGG 59.113 45.455 0.00 0.00 33.00 4.00
1501 3250 3.265221 TGGCAGAATCTTGAACTGGAGAT 59.735 43.478 0.00 0.00 34.19 2.75
1503 3252 4.511527 GCAGAATCTTGAACTGGAGATCA 58.488 43.478 0.00 0.00 31.63 2.92
1510 3259 1.980765 TGAACTGGAGATCACTTGGCT 59.019 47.619 0.00 0.00 0.00 4.75
1520 3270 1.179152 TCACTTGGCTCGAATACCGA 58.821 50.000 0.00 0.00 46.35 4.69
1538 3288 2.679837 CCGAACTGATTTCATCCACCAG 59.320 50.000 0.00 0.00 33.24 4.00
1539 3289 2.096496 CGAACTGATTTCATCCACCAGC 59.904 50.000 0.00 0.00 33.24 4.85
1540 3290 3.350833 GAACTGATTTCATCCACCAGCT 58.649 45.455 0.00 0.00 33.94 4.24
1545 3295 4.264253 TGATTTCATCCACCAGCTAGTTG 58.736 43.478 0.00 0.00 0.00 3.16
1549 3299 4.098914 TCATCCACCAGCTAGTTGTTTT 57.901 40.909 5.81 0.00 0.00 2.43
1557 3307 6.039382 CCACCAGCTAGTTGTTTTAAAAGTCT 59.961 38.462 5.81 3.25 0.00 3.24
1574 3324 9.778741 TTAAAAGTCTGAGCTAATGAAAGAAGA 57.221 29.630 0.00 0.00 0.00 2.87
1579 3329 4.495422 TGAGCTAATGAAAGAAGACGGAC 58.505 43.478 0.00 0.00 0.00 4.79
1608 3359 4.982999 TGTCAACACTATTACGCTCTCTC 58.017 43.478 0.00 0.00 0.00 3.20
1611 3362 2.641305 ACACTATTACGCTCTCTCGGT 58.359 47.619 0.00 0.00 0.00 4.69
1615 3366 4.451435 CACTATTACGCTCTCTCGGTATGA 59.549 45.833 0.00 0.00 0.00 2.15
1624 3378 5.059833 GCTCTCTCGGTATGAAATCCAATT 58.940 41.667 0.00 0.00 0.00 2.32
1625 3379 6.223852 GCTCTCTCGGTATGAAATCCAATTA 58.776 40.000 0.00 0.00 0.00 1.40
1626 3380 6.876257 GCTCTCTCGGTATGAAATCCAATTAT 59.124 38.462 0.00 0.00 0.00 1.28
1655 3409 6.361433 TCTTTTATTTGTGACTTGTGAGGGA 58.639 36.000 0.00 0.00 0.00 4.20
1687 3441 5.629125 AGAAAGAGGTCAAGCAAGAGAAAT 58.371 37.500 0.00 0.00 0.00 2.17
1737 3491 2.415090 CCACAACGAGTTAGTACCTCCG 60.415 54.545 0.00 0.00 0.00 4.63
1752 3506 0.457851 CTCCGGTAGAGGTCAAGCAG 59.542 60.000 0.00 0.00 39.13 4.24
1753 3507 0.970937 TCCGGTAGAGGTCAAGCAGG 60.971 60.000 0.00 0.00 0.00 4.85
1755 3509 0.895530 CGGTAGAGGTCAAGCAGGAA 59.104 55.000 0.00 0.00 0.00 3.36
1767 3521 5.691754 GGTCAAGCAGGAAAAACTACATTTG 59.308 40.000 0.00 0.00 0.00 2.32
1797 3551 4.906618 TCATTTTGGAGTAGGGTGTTCTC 58.093 43.478 0.00 0.00 0.00 2.87
1918 3677 8.172352 ACTTTACATGTGTATAAAGTTTGGCA 57.828 30.769 15.57 0.00 45.15 4.92
2142 3908 5.973565 CGTCCTCCATTTAGCATTTTCATTC 59.026 40.000 0.00 0.00 0.00 2.67
2155 3921 8.353423 AGCATTTTCATTCAGTACTTGGTTAT 57.647 30.769 0.00 0.00 0.00 1.89
2186 3952 5.753438 TCTCATACGATTTTGGATGCACTAC 59.247 40.000 0.00 0.00 0.00 2.73
2187 3953 5.670485 TCATACGATTTTGGATGCACTACT 58.330 37.500 0.00 0.00 0.00 2.57
2188 3954 6.112734 TCATACGATTTTGGATGCACTACTT 58.887 36.000 0.00 0.00 0.00 2.24
2189 3955 4.946784 ACGATTTTGGATGCACTACTTC 57.053 40.909 0.00 0.00 0.00 3.01
2190 3956 4.579869 ACGATTTTGGATGCACTACTTCT 58.420 39.130 0.00 0.00 0.00 2.85
2191 3957 5.003804 ACGATTTTGGATGCACTACTTCTT 58.996 37.500 0.00 0.00 0.00 2.52
2192 3958 5.473504 ACGATTTTGGATGCACTACTTCTTT 59.526 36.000 0.00 0.00 0.00 2.52
2193 3959 5.796935 CGATTTTGGATGCACTACTTCTTTG 59.203 40.000 0.00 0.00 0.00 2.77
2194 3960 6.348458 CGATTTTGGATGCACTACTTCTTTGA 60.348 38.462 0.00 0.00 0.00 2.69
2195 3961 6.899393 TTTTGGATGCACTACTTCTTTGAT 57.101 33.333 0.00 0.00 0.00 2.57
2196 3962 7.994425 TTTTGGATGCACTACTTCTTTGATA 57.006 32.000 0.00 0.00 0.00 2.15
2197 3963 6.985188 TTGGATGCACTACTTCTTTGATAC 57.015 37.500 0.00 0.00 0.00 2.24
2198 3964 6.048732 TGGATGCACTACTTCTTTGATACA 57.951 37.500 0.00 0.00 0.00 2.29
2199 3965 6.653020 TGGATGCACTACTTCTTTGATACAT 58.347 36.000 0.00 0.00 0.00 2.29
2200 3966 7.791029 TGGATGCACTACTTCTTTGATACATA 58.209 34.615 0.00 0.00 0.00 2.29
2201 3967 7.928167 TGGATGCACTACTTCTTTGATACATAG 59.072 37.037 0.00 0.00 0.00 2.23
2202 3968 7.386299 GGATGCACTACTTCTTTGATACATAGG 59.614 40.741 0.00 0.00 0.00 2.57
2203 3969 7.182817 TGCACTACTTCTTTGATACATAGGT 57.817 36.000 0.00 0.00 0.00 3.08
2204 3970 7.041721 TGCACTACTTCTTTGATACATAGGTG 58.958 38.462 0.00 0.00 0.00 4.00
2205 3971 7.093509 TGCACTACTTCTTTGATACATAGGTGA 60.094 37.037 0.00 0.00 0.00 4.02
2206 3972 7.436673 GCACTACTTCTTTGATACATAGGTGAG 59.563 40.741 0.00 0.00 0.00 3.51
2207 3973 8.687242 CACTACTTCTTTGATACATAGGTGAGA 58.313 37.037 0.00 0.00 0.00 3.27
2208 3974 9.427821 ACTACTTCTTTGATACATAGGTGAGAT 57.572 33.333 0.00 0.00 0.00 2.75
2209 3975 9.689976 CTACTTCTTTGATACATAGGTGAGATG 57.310 37.037 0.00 0.00 0.00 2.90
2210 3976 8.083828 ACTTCTTTGATACATAGGTGAGATGT 57.916 34.615 0.00 0.00 40.59 3.06
2211 3977 9.201989 ACTTCTTTGATACATAGGTGAGATGTA 57.798 33.333 0.00 0.00 42.43 2.29
2212 3978 9.689976 CTTCTTTGATACATAGGTGAGATGTAG 57.310 37.037 0.00 0.00 41.74 2.74
2213 3979 8.183104 TCTTTGATACATAGGTGAGATGTAGG 57.817 38.462 0.00 0.00 41.74 3.18
2214 3980 8.004801 TCTTTGATACATAGGTGAGATGTAGGA 58.995 37.037 0.00 0.00 41.74 2.94
2215 3981 7.767250 TTGATACATAGGTGAGATGTAGGAG 57.233 40.000 0.00 0.00 41.74 3.69
2216 3982 5.712446 TGATACATAGGTGAGATGTAGGAGC 59.288 44.000 0.00 0.00 41.74 4.70
2217 3983 3.235200 ACATAGGTGAGATGTAGGAGCC 58.765 50.000 0.00 0.00 35.75 4.70
2218 3984 2.383442 TAGGTGAGATGTAGGAGCCC 57.617 55.000 0.00 0.00 0.00 5.19
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 1.554042 AAGTTACCAGTTGCGTCGCG 61.554 55.000 13.38 0.00 0.00 5.87
1 2 1.421382 TAAGTTACCAGTTGCGTCGC 58.579 50.000 11.10 11.10 0.00 5.19
2 3 2.222729 GCATAAGTTACCAGTTGCGTCG 60.223 50.000 0.00 0.00 0.00 5.12
3 4 2.739913 TGCATAAGTTACCAGTTGCGTC 59.260 45.455 2.01 0.00 32.90 5.19
4 5 2.482721 GTGCATAAGTTACCAGTTGCGT 59.517 45.455 0.00 0.00 32.90 5.24
5 6 2.742053 AGTGCATAAGTTACCAGTTGCG 59.258 45.455 0.00 0.00 32.90 4.85
6 7 4.766404 AAGTGCATAAGTTACCAGTTGC 57.234 40.909 0.00 2.64 0.00 4.17
7 8 7.849804 AGATAAGTGCATAAGTTACCAGTTG 57.150 36.000 12.43 0.00 0.00 3.16
8 9 8.100791 TGAAGATAAGTGCATAAGTTACCAGTT 58.899 33.333 0.00 9.27 0.00 3.16
9 10 7.620880 TGAAGATAAGTGCATAAGTTACCAGT 58.379 34.615 0.00 0.00 0.00 4.00
10 11 7.766278 ACTGAAGATAAGTGCATAAGTTACCAG 59.234 37.037 0.00 0.00 0.00 4.00
11 12 7.620880 ACTGAAGATAAGTGCATAAGTTACCA 58.379 34.615 0.00 0.00 0.00 3.25
12 13 7.224949 GGACTGAAGATAAGTGCATAAGTTACC 59.775 40.741 0.00 0.00 36.15 2.85
13 14 7.982354 AGGACTGAAGATAAGTGCATAAGTTAC 59.018 37.037 0.00 0.00 38.36 2.50
14 15 8.079211 AGGACTGAAGATAAGTGCATAAGTTA 57.921 34.615 0.00 0.00 38.36 2.24
15 16 6.951971 AGGACTGAAGATAAGTGCATAAGTT 58.048 36.000 0.00 0.00 38.36 2.66
16 17 6.552445 AGGACTGAAGATAAGTGCATAAGT 57.448 37.500 0.00 0.00 38.36 2.24
17 18 6.238320 GCAAGGACTGAAGATAAGTGCATAAG 60.238 42.308 0.00 0.00 38.36 1.73
18 19 5.586243 GCAAGGACTGAAGATAAGTGCATAA 59.414 40.000 0.00 0.00 38.36 1.90
19 20 5.118990 GCAAGGACTGAAGATAAGTGCATA 58.881 41.667 0.00 0.00 38.36 3.14
20 21 3.944015 GCAAGGACTGAAGATAAGTGCAT 59.056 43.478 0.00 0.00 38.36 3.96
21 22 3.338249 GCAAGGACTGAAGATAAGTGCA 58.662 45.455 0.00 0.00 38.36 4.57
22 23 2.680339 GGCAAGGACTGAAGATAAGTGC 59.320 50.000 0.00 0.00 36.34 4.40
23 24 3.937706 CTGGCAAGGACTGAAGATAAGTG 59.062 47.826 0.00 0.00 0.00 3.16
24 25 3.584848 ACTGGCAAGGACTGAAGATAAGT 59.415 43.478 0.00 0.00 0.00 2.24
25 26 4.213564 ACTGGCAAGGACTGAAGATAAG 57.786 45.455 0.00 0.00 0.00 1.73
26 27 4.640771 AACTGGCAAGGACTGAAGATAA 57.359 40.909 0.00 0.00 0.00 1.75
27 28 4.640771 AAACTGGCAAGGACTGAAGATA 57.359 40.909 0.00 0.00 0.00 1.98
28 29 3.515602 AAACTGGCAAGGACTGAAGAT 57.484 42.857 0.00 0.00 0.00 2.40
29 30 4.431416 TTAAACTGGCAAGGACTGAAGA 57.569 40.909 0.00 0.00 0.00 2.87
30 31 5.712152 AATTAAACTGGCAAGGACTGAAG 57.288 39.130 0.00 0.00 0.00 3.02
31 32 6.206634 CAGTAATTAAACTGGCAAGGACTGAA 59.793 38.462 0.00 0.00 42.63 3.02
32 33 5.705441 CAGTAATTAAACTGGCAAGGACTGA 59.295 40.000 0.00 0.00 42.63 3.41
33 34 5.942872 CAGTAATTAAACTGGCAAGGACTG 58.057 41.667 0.00 0.00 42.63 3.51
47 48 9.841295 CCAGCCTTACCTATTAACAGTAATTAA 57.159 33.333 0.00 0.00 32.10 1.40
48 49 7.935210 GCCAGCCTTACCTATTAACAGTAATTA 59.065 37.037 0.00 0.00 32.10 1.40
49 50 6.771267 GCCAGCCTTACCTATTAACAGTAATT 59.229 38.462 0.00 0.00 32.10 1.40
50 51 6.296803 GCCAGCCTTACCTATTAACAGTAAT 58.703 40.000 0.00 0.00 34.26 1.89
51 52 5.397109 GGCCAGCCTTACCTATTAACAGTAA 60.397 44.000 0.00 0.00 0.00 2.24
52 53 4.102054 GGCCAGCCTTACCTATTAACAGTA 59.898 45.833 0.00 0.00 0.00 2.74
53 54 3.118000 GGCCAGCCTTACCTATTAACAGT 60.118 47.826 0.00 0.00 0.00 3.55
54 55 3.477530 GGCCAGCCTTACCTATTAACAG 58.522 50.000 0.00 0.00 0.00 3.16
55 56 2.173996 GGGCCAGCCTTACCTATTAACA 59.826 50.000 4.39 0.00 36.10 2.41
56 57 2.173996 TGGGCCAGCCTTACCTATTAAC 59.826 50.000 0.00 0.00 36.10 2.01
57 58 2.494158 TGGGCCAGCCTTACCTATTAA 58.506 47.619 0.00 0.00 36.10 1.40
58 59 2.173996 GTTGGGCCAGCCTTACCTATTA 59.826 50.000 9.55 0.00 36.10 0.98
59 60 1.063942 GTTGGGCCAGCCTTACCTATT 60.064 52.381 9.55 0.00 36.10 1.73
60 61 0.551396 GTTGGGCCAGCCTTACCTAT 59.449 55.000 9.55 0.00 36.10 2.57
61 62 0.842905 TGTTGGGCCAGCCTTACCTA 60.843 55.000 18.29 0.00 36.10 3.08
62 63 1.725169 TTGTTGGGCCAGCCTTACCT 61.725 55.000 18.29 0.00 36.10 3.08
63 64 1.228737 TTGTTGGGCCAGCCTTACC 60.229 57.895 18.29 0.00 36.10 2.85
64 65 0.539669 AGTTGTTGGGCCAGCCTTAC 60.540 55.000 18.29 12.68 36.10 2.34
65 66 1.068948 TAGTTGTTGGGCCAGCCTTA 58.931 50.000 18.29 4.84 36.10 2.69
66 67 0.187361 TTAGTTGTTGGGCCAGCCTT 59.813 50.000 18.29 5.81 36.10 4.35
67 68 0.409484 ATTAGTTGTTGGGCCAGCCT 59.591 50.000 18.29 10.86 36.10 4.58
68 69 0.817654 GATTAGTTGTTGGGCCAGCC 59.182 55.000 18.29 8.11 0.00 4.85
69 70 0.817654 GGATTAGTTGTTGGGCCAGC 59.182 55.000 14.14 14.14 0.00 4.85
70 71 2.514458 AGGATTAGTTGTTGGGCCAG 57.486 50.000 6.23 0.00 0.00 4.85
71 72 2.916934 ACTAGGATTAGTTGTTGGGCCA 59.083 45.455 0.00 0.00 36.75 5.36
72 73 3.646736 ACTAGGATTAGTTGTTGGGCC 57.353 47.619 0.00 0.00 36.75 5.80
73 74 6.826741 TCATTAACTAGGATTAGTTGTTGGGC 59.173 38.462 9.56 0.00 46.80 5.36
74 75 8.674607 GTTCATTAACTAGGATTAGTTGTTGGG 58.325 37.037 9.56 0.00 46.80 4.12
75 76 9.226606 TGTTCATTAACTAGGATTAGTTGTTGG 57.773 33.333 9.56 0.00 46.80 3.77
94 95 7.697710 CGTCATGTGCAGTTTATATTGTTCATT 59.302 33.333 0.00 0.00 0.00 2.57
95 96 7.148255 ACGTCATGTGCAGTTTATATTGTTCAT 60.148 33.333 0.00 0.00 0.00 2.57
96 97 6.148645 ACGTCATGTGCAGTTTATATTGTTCA 59.851 34.615 0.00 0.00 0.00 3.18
97 98 6.542852 ACGTCATGTGCAGTTTATATTGTTC 58.457 36.000 0.00 0.00 0.00 3.18
98 99 6.403200 GGACGTCATGTGCAGTTTATATTGTT 60.403 38.462 18.91 0.00 39.04 2.83
99 100 5.064707 GGACGTCATGTGCAGTTTATATTGT 59.935 40.000 18.91 0.00 39.04 2.71
100 101 5.064579 TGGACGTCATGTGCAGTTTATATTG 59.935 40.000 18.91 0.00 44.74 1.90
101 102 5.182487 TGGACGTCATGTGCAGTTTATATT 58.818 37.500 18.91 0.00 44.74 1.28
102 103 4.765273 TGGACGTCATGTGCAGTTTATAT 58.235 39.130 18.91 0.00 44.74 0.86
103 104 4.195225 TGGACGTCATGTGCAGTTTATA 57.805 40.909 18.91 0.00 44.74 0.98
104 105 3.052455 TGGACGTCATGTGCAGTTTAT 57.948 42.857 18.91 0.00 44.74 1.40
105 106 2.535012 TGGACGTCATGTGCAGTTTA 57.465 45.000 18.91 0.00 44.74 2.01
106 107 3.395210 TGGACGTCATGTGCAGTTT 57.605 47.368 18.91 0.00 44.74 2.66
111 112 5.065988 AGGTATAATTTTGGACGTCATGTGC 59.934 40.000 18.91 0.00 39.78 4.57
112 113 6.315144 TCAGGTATAATTTTGGACGTCATGTG 59.685 38.462 18.91 1.05 0.00 3.21
113 114 6.315393 GTCAGGTATAATTTTGGACGTCATGT 59.685 38.462 18.91 0.00 0.00 3.21
114 115 6.509517 CGTCAGGTATAATTTTGGACGTCATG 60.510 42.308 18.91 0.00 41.02 3.07
115 116 5.522460 CGTCAGGTATAATTTTGGACGTCAT 59.478 40.000 18.91 2.59 41.02 3.06
116 117 4.865925 CGTCAGGTATAATTTTGGACGTCA 59.134 41.667 18.91 0.27 41.02 4.35
117 118 4.269363 CCGTCAGGTATAATTTTGGACGTC 59.731 45.833 7.13 7.13 43.48 4.34
118 119 4.081531 TCCGTCAGGTATAATTTTGGACGT 60.082 41.667 0.00 0.00 43.48 4.34
119 120 4.435425 TCCGTCAGGTATAATTTTGGACG 58.565 43.478 0.00 0.00 44.29 4.79
120 121 7.119262 CCATATCCGTCAGGTATAATTTTGGAC 59.881 40.741 0.00 0.00 39.05 4.02
121 122 7.016760 TCCATATCCGTCAGGTATAATTTTGGA 59.983 37.037 0.00 0.00 39.05 3.53
122 123 7.119262 GTCCATATCCGTCAGGTATAATTTTGG 59.881 40.741 0.00 0.00 39.05 3.28
123 124 7.148639 CGTCCATATCCGTCAGGTATAATTTTG 60.149 40.741 0.00 0.00 39.05 2.44
124 125 6.872020 CGTCCATATCCGTCAGGTATAATTTT 59.128 38.462 0.00 0.00 39.05 1.82
125 126 6.209986 TCGTCCATATCCGTCAGGTATAATTT 59.790 38.462 0.00 0.00 39.05 1.82
126 127 5.713389 TCGTCCATATCCGTCAGGTATAATT 59.287 40.000 0.00 0.00 39.05 1.40
127 128 5.258841 TCGTCCATATCCGTCAGGTATAAT 58.741 41.667 0.00 0.00 39.05 1.28
128 129 4.654915 TCGTCCATATCCGTCAGGTATAA 58.345 43.478 0.00 0.00 39.05 0.98
129 130 4.290711 TCGTCCATATCCGTCAGGTATA 57.709 45.455 0.00 0.00 39.05 1.47
130 131 3.150458 TCGTCCATATCCGTCAGGTAT 57.850 47.619 0.00 0.00 39.05 2.73
131 132 2.643995 TCGTCCATATCCGTCAGGTA 57.356 50.000 0.00 0.00 39.05 3.08
132 133 1.613925 CATCGTCCATATCCGTCAGGT 59.386 52.381 0.00 0.00 39.05 4.00
133 134 1.613925 ACATCGTCCATATCCGTCAGG 59.386 52.381 0.00 0.00 39.46 3.86
134 135 3.052745 CAACATCGTCCATATCCGTCAG 58.947 50.000 0.00 0.00 0.00 3.51
135 136 2.691011 TCAACATCGTCCATATCCGTCA 59.309 45.455 0.00 0.00 0.00 4.35
136 137 3.364889 TCAACATCGTCCATATCCGTC 57.635 47.619 0.00 0.00 0.00 4.79
137 138 4.039245 AGAATCAACATCGTCCATATCCGT 59.961 41.667 0.00 0.00 0.00 4.69
138 139 4.560128 AGAATCAACATCGTCCATATCCG 58.440 43.478 0.00 0.00 0.00 4.18
139 140 6.867662 AAAGAATCAACATCGTCCATATCC 57.132 37.500 0.00 0.00 0.00 2.59
140 141 7.360438 GGCTAAAGAATCAACATCGTCCATATC 60.360 40.741 0.00 0.00 0.00 1.63
182 183 7.117812 GCTTAGTTGACAAAACTAGCATCACTA 59.882 37.037 0.00 0.00 34.58 2.74
220 221 3.558931 TTCAGTGTTTTGGAGCTCTCA 57.441 42.857 14.64 7.25 0.00 3.27
221 222 4.130118 TCTTTCAGTGTTTTGGAGCTCTC 58.870 43.478 14.64 4.40 0.00 3.20
235 236 3.270877 AGTTTTGCACGTCTCTTTCAGT 58.729 40.909 0.00 0.00 0.00 3.41
236 237 3.951979 AGTTTTGCACGTCTCTTTCAG 57.048 42.857 0.00 0.00 0.00 3.02
237 238 7.172532 ACATATTAGTTTTGCACGTCTCTTTCA 59.827 33.333 0.00 0.00 0.00 2.69
238 239 7.519002 ACATATTAGTTTTGCACGTCTCTTTC 58.481 34.615 0.00 0.00 0.00 2.62
239 240 7.435068 ACATATTAGTTTTGCACGTCTCTTT 57.565 32.000 0.00 0.00 0.00 2.52
240 241 7.817962 AGTACATATTAGTTTTGCACGTCTCTT 59.182 33.333 0.00 0.00 0.00 2.85
241 242 7.275779 CAGTACATATTAGTTTTGCACGTCTCT 59.724 37.037 0.00 0.00 0.00 3.10
242 243 7.391786 CAGTACATATTAGTTTTGCACGTCTC 58.608 38.462 0.00 0.00 0.00 3.36
243 244 6.183360 GCAGTACATATTAGTTTTGCACGTCT 60.183 38.462 0.00 0.00 32.96 4.18
244 245 5.957796 GCAGTACATATTAGTTTTGCACGTC 59.042 40.000 0.00 0.00 32.96 4.34
245 246 5.163794 GGCAGTACATATTAGTTTTGCACGT 60.164 40.000 0.00 0.00 33.79 4.49
246 247 5.064707 AGGCAGTACATATTAGTTTTGCACG 59.935 40.000 0.00 0.00 33.79 5.34
247 248 6.436843 AGGCAGTACATATTAGTTTTGCAC 57.563 37.500 0.00 0.00 33.79 4.57
248 249 5.588648 GGAGGCAGTACATATTAGTTTTGCA 59.411 40.000 0.00 0.00 33.79 4.08
249 250 5.277345 CGGAGGCAGTACATATTAGTTTTGC 60.277 44.000 0.00 0.00 0.00 3.68
250 251 5.815740 ACGGAGGCAGTACATATTAGTTTTG 59.184 40.000 0.00 0.00 0.00 2.44
251 252 5.985911 ACGGAGGCAGTACATATTAGTTTT 58.014 37.500 0.00 0.00 0.00 2.43
252 253 5.609533 ACGGAGGCAGTACATATTAGTTT 57.390 39.130 0.00 0.00 0.00 2.66
253 254 6.720112 TTACGGAGGCAGTACATATTAGTT 57.280 37.500 0.00 0.00 0.00 2.24
254 255 6.323225 AGTTTACGGAGGCAGTACATATTAGT 59.677 38.462 0.00 0.00 0.00 2.24
255 256 6.746120 AGTTTACGGAGGCAGTACATATTAG 58.254 40.000 0.00 0.00 0.00 1.73
256 257 6.720112 AGTTTACGGAGGCAGTACATATTA 57.280 37.500 0.00 0.00 0.00 0.98
257 258 5.609533 AGTTTACGGAGGCAGTACATATT 57.390 39.130 0.00 0.00 0.00 1.28
258 259 6.071503 GGATAGTTTACGGAGGCAGTACATAT 60.072 42.308 0.00 0.00 0.00 1.78
259 260 5.242393 GGATAGTTTACGGAGGCAGTACATA 59.758 44.000 0.00 0.00 0.00 2.29
260 261 4.038883 GGATAGTTTACGGAGGCAGTACAT 59.961 45.833 0.00 0.00 0.00 2.29
261 262 3.382546 GGATAGTTTACGGAGGCAGTACA 59.617 47.826 0.00 0.00 0.00 2.90
262 263 3.635836 AGGATAGTTTACGGAGGCAGTAC 59.364 47.826 0.00 0.00 0.00 2.73
263 264 3.907221 AGGATAGTTTACGGAGGCAGTA 58.093 45.455 0.00 0.00 0.00 2.74
264 265 2.748388 AGGATAGTTTACGGAGGCAGT 58.252 47.619 0.00 0.00 0.00 4.40
265 266 4.931661 TTAGGATAGTTTACGGAGGCAG 57.068 45.455 0.00 0.00 0.00 4.85
266 267 5.881923 ATTTAGGATAGTTTACGGAGGCA 57.118 39.130 0.00 0.00 0.00 4.75
267 268 7.148457 GCAATATTTAGGATAGTTTACGGAGGC 60.148 40.741 0.00 0.00 0.00 4.70
268 269 8.095169 AGCAATATTTAGGATAGTTTACGGAGG 58.905 37.037 0.00 0.00 0.00 4.30
271 272 9.367444 CCTAGCAATATTTAGGATAGTTTACGG 57.633 37.037 7.25 0.00 39.02 4.02
272 273 9.367444 CCCTAGCAATATTTAGGATAGTTTACG 57.633 37.037 12.92 0.00 39.02 3.18
280 281 9.117223 ACACTATTCCCTAGCAATATTTAGGAT 57.883 33.333 12.92 4.51 39.02 3.24
281 282 8.506196 ACACTATTCCCTAGCAATATTTAGGA 57.494 34.615 12.92 0.99 39.02 2.94
282 283 9.877178 CTACACTATTCCCTAGCAATATTTAGG 57.123 37.037 6.31 6.31 36.91 2.69
289 290 8.989131 TCTTTTACTACACTATTCCCTAGCAAT 58.011 33.333 0.00 0.00 0.00 3.56
290 291 8.370266 TCTTTTACTACACTATTCCCTAGCAA 57.630 34.615 0.00 0.00 0.00 3.91
291 292 7.966339 TCTTTTACTACACTATTCCCTAGCA 57.034 36.000 0.00 0.00 0.00 3.49
292 293 8.862085 AGATCTTTTACTACACTATTCCCTAGC 58.138 37.037 0.00 0.00 0.00 3.42
318 319 7.899973 ACGTACTCCCTTTTAGTGATCTAAAA 58.100 34.615 11.08 11.08 46.95 1.52
319 320 7.395489 AGACGTACTCCCTTTTAGTGATCTAAA 59.605 37.037 0.00 0.00 42.24 1.85
320 321 6.888632 AGACGTACTCCCTTTTAGTGATCTAA 59.111 38.462 0.00 0.00 34.76 2.10
321 322 6.318144 CAGACGTACTCCCTTTTAGTGATCTA 59.682 42.308 0.00 0.00 0.00 1.98
322 323 5.125739 CAGACGTACTCCCTTTTAGTGATCT 59.874 44.000 0.00 0.00 0.00 2.75
323 324 5.125097 TCAGACGTACTCCCTTTTAGTGATC 59.875 44.000 0.00 0.00 0.00 2.92
324 325 5.014858 TCAGACGTACTCCCTTTTAGTGAT 58.985 41.667 0.00 0.00 0.00 3.06
325 326 4.401022 TCAGACGTACTCCCTTTTAGTGA 58.599 43.478 0.00 0.00 0.00 3.41
326 327 4.778534 TCAGACGTACTCCCTTTTAGTG 57.221 45.455 0.00 0.00 0.00 2.74
327 328 4.586001 TGTTCAGACGTACTCCCTTTTAGT 59.414 41.667 0.00 0.00 0.00 2.24
328 329 5.130292 TGTTCAGACGTACTCCCTTTTAG 57.870 43.478 0.00 0.00 0.00 1.85
329 330 5.733620 ATGTTCAGACGTACTCCCTTTTA 57.266 39.130 0.00 0.00 0.00 1.52
330 331 4.618920 ATGTTCAGACGTACTCCCTTTT 57.381 40.909 0.00 0.00 0.00 2.27
331 332 5.733620 TTATGTTCAGACGTACTCCCTTT 57.266 39.130 0.00 0.00 0.00 3.11
332 333 5.245526 AGTTTATGTTCAGACGTACTCCCTT 59.754 40.000 0.00 0.00 0.00 3.95
333 334 4.771054 AGTTTATGTTCAGACGTACTCCCT 59.229 41.667 0.00 0.00 0.00 4.20
334 335 4.863131 CAGTTTATGTTCAGACGTACTCCC 59.137 45.833 0.00 0.00 0.00 4.30
335 336 5.467705 ACAGTTTATGTTCAGACGTACTCC 58.532 41.667 0.00 0.00 39.96 3.85
364 365 9.103861 GCTCTGCTATTATTCAAGAAACTAGTT 57.896 33.333 1.12 1.12 0.00 2.24
365 366 8.482128 AGCTCTGCTATTATTCAAGAAACTAGT 58.518 33.333 0.00 0.00 36.99 2.57
366 367 8.885494 AGCTCTGCTATTATTCAAGAAACTAG 57.115 34.615 0.00 0.00 36.99 2.57
410 413 2.296190 CGGATATGTGTAGCAGCTACCA 59.704 50.000 26.65 22.85 36.24 3.25
411 414 2.296471 ACGGATATGTGTAGCAGCTACC 59.704 50.000 26.65 18.69 36.24 3.18
413 416 3.243737 CCAACGGATATGTGTAGCAGCTA 60.244 47.826 0.00 0.00 0.00 3.32
502 508 6.969366 TGACATTGTCAAAGTAAACCATCAG 58.031 36.000 16.95 0.00 39.78 2.90
584 590 2.902705 AAGTTCTAACCGTGCTGACA 57.097 45.000 0.00 0.00 0.00 3.58
611 617 3.130340 TCGCATGCAGATACTGTTACTGA 59.870 43.478 19.57 0.00 33.43 3.41
653 659 1.206610 TCTTCTCTGCAGCATCCAGTC 59.793 52.381 9.47 0.00 0.00 3.51
852 868 2.116983 GAGAAGGCAGGTGACAGGCA 62.117 60.000 3.91 0.00 45.41 4.75
928 959 2.368875 ACTTCCACAGTTCCACTACCTG 59.631 50.000 0.00 0.00 27.32 4.00
935 966 4.021368 GCTAGTTCTACTTCCACAGTTCCA 60.021 45.833 0.00 0.00 36.88 3.53
936 967 4.021368 TGCTAGTTCTACTTCCACAGTTCC 60.021 45.833 0.00 0.00 36.88 3.62
937 968 4.924462 GTGCTAGTTCTACTTCCACAGTTC 59.076 45.833 0.00 0.00 36.88 3.01
938 969 4.558898 CGTGCTAGTTCTACTTCCACAGTT 60.559 45.833 0.00 0.00 36.88 3.16
939 970 3.057456 CGTGCTAGTTCTACTTCCACAGT 60.057 47.826 0.00 0.00 39.87 3.55
940 971 3.057456 ACGTGCTAGTTCTACTTCCACAG 60.057 47.826 0.00 0.00 31.64 3.66
941 972 2.889045 ACGTGCTAGTTCTACTTCCACA 59.111 45.455 0.00 0.00 31.64 4.17
967 998 7.337942 GCCCTGAAAAAGATAGAGATCTCAAAA 59.662 37.037 24.39 9.92 41.87 2.44
968 999 6.825721 GCCCTGAAAAAGATAGAGATCTCAAA 59.174 38.462 24.39 12.44 41.87 2.69
969 1000 6.070021 TGCCCTGAAAAAGATAGAGATCTCAA 60.070 38.462 24.39 0.00 41.87 3.02
970 1001 5.426509 TGCCCTGAAAAAGATAGAGATCTCA 59.573 40.000 24.39 10.95 41.87 3.27
971 1002 5.923204 TGCCCTGAAAAAGATAGAGATCTC 58.077 41.667 15.29 15.29 41.87 2.75
972 1003 5.965033 TGCCCTGAAAAAGATAGAGATCT 57.035 39.130 0.00 0.00 44.79 2.75
973 1004 5.530543 CCTTGCCCTGAAAAAGATAGAGATC 59.469 44.000 0.00 0.00 0.00 2.75
974 1005 5.192522 TCCTTGCCCTGAAAAAGATAGAGAT 59.807 40.000 0.00 0.00 0.00 2.75
975 1006 4.536090 TCCTTGCCCTGAAAAAGATAGAGA 59.464 41.667 0.00 0.00 0.00 3.10
976 1007 4.848357 TCCTTGCCCTGAAAAAGATAGAG 58.152 43.478 0.00 0.00 0.00 2.43
977 1008 4.927267 TCCTTGCCCTGAAAAAGATAGA 57.073 40.909 0.00 0.00 0.00 1.98
978 1009 5.982890 TTTCCTTGCCCTGAAAAAGATAG 57.017 39.130 0.00 0.00 0.00 2.08
979 1010 6.015918 TCATTTCCTTGCCCTGAAAAAGATA 58.984 36.000 0.00 0.00 34.43 1.98
980 1011 4.840115 TCATTTCCTTGCCCTGAAAAAGAT 59.160 37.500 0.00 0.00 34.43 2.40
981 1012 4.222336 TCATTTCCTTGCCCTGAAAAAGA 58.778 39.130 0.00 0.00 34.43 2.52
982 1013 4.562143 CCTCATTTCCTTGCCCTGAAAAAG 60.562 45.833 0.00 0.00 34.43 2.27
983 1014 3.324556 CCTCATTTCCTTGCCCTGAAAAA 59.675 43.478 0.00 0.00 34.43 1.94
1047 1078 3.694058 CTTGAGCTCCATGGCCGCT 62.694 63.158 23.18 23.18 36.57 5.52
1203 1234 2.123726 GCCTAACATGGGCCCCAG 60.124 66.667 22.27 14.78 43.49 4.45
1259 1290 3.133691 CCAGATCATGTATTCACCCGTG 58.866 50.000 0.00 0.00 0.00 4.94
1266 1297 4.754114 GCCAGAACTCCAGATCATGTATTC 59.246 45.833 0.00 0.00 0.00 1.75
1340 2010 2.871096 TTGAAGTAATTGGCCGGAGT 57.129 45.000 5.05 0.00 0.00 3.85
1345 2015 8.925700 CAGTTTAGATTTTTGAAGTAATTGGCC 58.074 33.333 0.00 0.00 0.00 5.36
1412 3160 7.063191 CGTTTAAGGACTAAAGAAGCTTAGACC 59.937 40.741 0.00 2.96 41.33 3.85
1463 3211 9.592196 AGATTCTGCCAACATGGTATTATTATT 57.408 29.630 0.00 0.00 40.46 1.40
1466 3214 7.560991 TCAAGATTCTGCCAACATGGTATTATT 59.439 33.333 0.00 0.00 40.46 1.40
1467 3215 7.062322 TCAAGATTCTGCCAACATGGTATTAT 58.938 34.615 0.00 0.00 40.46 1.28
1475 3224 3.508793 CCAGTTCAAGATTCTGCCAACAT 59.491 43.478 0.00 0.00 0.00 2.71
1488 3237 2.746362 GCCAAGTGATCTCCAGTTCAAG 59.254 50.000 0.00 0.00 36.32 3.02
1496 3245 2.611225 ATTCGAGCCAAGTGATCTCC 57.389 50.000 0.00 0.00 0.00 3.71
1497 3246 3.385577 GGTATTCGAGCCAAGTGATCTC 58.614 50.000 0.00 0.00 0.00 2.75
1501 3250 1.179152 TCGGTATTCGAGCCAAGTGA 58.821 50.000 4.14 0.00 43.74 3.41
1526 3276 3.788227 ACAACTAGCTGGTGGATGAAA 57.212 42.857 12.22 0.00 37.78 2.69
1532 3282 6.039382 AGACTTTTAAAACAACTAGCTGGTGG 59.961 38.462 2.40 2.44 37.78 4.61
1538 3288 6.960468 AGCTCAGACTTTTAAAACAACTAGC 58.040 36.000 0.00 4.48 0.00 3.42
1549 3299 9.209175 GTCTTCTTTCATTAGCTCAGACTTTTA 57.791 33.333 0.00 0.00 0.00 1.52
1557 3307 4.021456 TGTCCGTCTTCTTTCATTAGCTCA 60.021 41.667 0.00 0.00 0.00 4.26
1579 3329 8.604035 AGAGCGTAATAGTGTTGACATTTATTG 58.396 33.333 11.13 0.00 0.00 1.90
1608 3359 8.783833 AGATCAGATAATTGGATTTCATACCG 57.216 34.615 0.00 0.00 0.00 4.02
1625 3379 9.288576 TCACAAGTCACAAATAAAAGATCAGAT 57.711 29.630 0.00 0.00 0.00 2.90
1626 3380 8.675705 TCACAAGTCACAAATAAAAGATCAGA 57.324 30.769 0.00 0.00 0.00 3.27
1655 3409 4.819088 GCTTGACCTCTTTCTTCTTTGAGT 59.181 41.667 0.00 0.00 0.00 3.41
1687 3441 5.362430 ACCAGAAAGCAAAACCTTGATGTAA 59.638 36.000 0.00 0.00 34.14 2.41
1737 3491 3.418684 TTTTCCTGCTTGACCTCTACC 57.581 47.619 0.00 0.00 0.00 3.18
1752 3506 8.364129 TGAAAATGCTCAAATGTAGTTTTTCC 57.636 30.769 0.00 0.00 32.81 3.13
1767 3521 5.185828 ACCCTACTCCAAAATGAAAATGCTC 59.814 40.000 0.00 0.00 0.00 4.26
1889 3648 9.749490 CAAACTTTATACACATGTAAAGTACGG 57.251 33.333 19.70 11.42 46.29 4.02
1918 3677 5.796424 AGCTCTCACCAAAATGTTTCATT 57.204 34.783 0.00 0.00 0.00 2.57
1957 3716 9.260002 ACTGTTCACCATTTTGAAAATCATAAC 57.740 29.630 0.00 4.47 37.24 1.89
2106 3872 1.626321 TGGAGGACGAGCACCATAAAA 59.374 47.619 0.00 0.00 0.00 1.52
2109 3875 1.496060 AATGGAGGACGAGCACCATA 58.504 50.000 0.00 0.00 41.47 2.74
2114 3880 0.901827 TGCTAAATGGAGGACGAGCA 59.098 50.000 0.00 0.00 37.58 4.26
2155 3921 9.371136 GCATCCAAAATCGTATGAGAAGATATA 57.629 33.333 0.00 0.00 0.00 0.86
2160 3926 5.295292 AGTGCATCCAAAATCGTATGAGAAG 59.705 40.000 0.00 0.00 0.00 2.85
2165 3931 5.991328 AGTAGTGCATCCAAAATCGTATG 57.009 39.130 0.00 0.00 0.00 2.39
2169 3935 5.551760 AAGAAGTAGTGCATCCAAAATCG 57.448 39.130 0.00 0.00 0.00 3.34
2170 3936 6.913170 TCAAAGAAGTAGTGCATCCAAAATC 58.087 36.000 0.00 0.00 0.00 2.17
2186 3952 9.689976 CTACATCTCACCTATGTATCAAAGAAG 57.310 37.037 0.00 0.00 38.71 2.85
2187 3953 8.642432 CCTACATCTCACCTATGTATCAAAGAA 58.358 37.037 0.00 0.00 38.71 2.52
2188 3954 8.004801 TCCTACATCTCACCTATGTATCAAAGA 58.995 37.037 0.00 0.00 38.71 2.52
2189 3955 8.183104 TCCTACATCTCACCTATGTATCAAAG 57.817 38.462 0.00 0.00 38.71 2.77
2190 3956 7.255977 GCTCCTACATCTCACCTATGTATCAAA 60.256 40.741 0.00 0.00 38.71 2.69
2191 3957 6.209589 GCTCCTACATCTCACCTATGTATCAA 59.790 42.308 0.00 0.00 38.71 2.57
2192 3958 5.712446 GCTCCTACATCTCACCTATGTATCA 59.288 44.000 0.00 0.00 38.71 2.15
2193 3959 5.126384 GGCTCCTACATCTCACCTATGTATC 59.874 48.000 0.00 0.00 38.71 2.24
2194 3960 5.020132 GGCTCCTACATCTCACCTATGTAT 58.980 45.833 0.00 0.00 38.71 2.29
2195 3961 4.408276 GGCTCCTACATCTCACCTATGTA 58.592 47.826 0.00 0.00 38.49 2.29
2196 3962 3.235200 GGCTCCTACATCTCACCTATGT 58.765 50.000 0.00 0.00 40.57 2.29
2197 3963 2.564947 GGGCTCCTACATCTCACCTATG 59.435 54.545 0.00 0.00 0.00 2.23
2198 3964 2.896039 GGGCTCCTACATCTCACCTAT 58.104 52.381 0.00 0.00 0.00 2.57
2199 3965 2.383442 GGGCTCCTACATCTCACCTA 57.617 55.000 0.00 0.00 0.00 3.08
2200 3966 3.232279 GGGCTCCTACATCTCACCT 57.768 57.895 0.00 0.00 0.00 4.00


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.