Multiple sequence alignment - TraesCS2A01G204000

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS2A01G204000 chr2A 100.000 3495 0 0 1 3495 180214905 180211411 0.000000e+00 6455
1 TraesCS2A01G204000 chr2A 84.568 486 67 5 1300 1784 21632609 21633087 3.160000e-130 475
2 TraesCS2A01G204000 chr2A 95.804 143 6 0 961 1103 180213898 180213756 7.540000e-57 231
3 TraesCS2A01G204000 chr6B 98.431 3124 33 12 1 3111 532351218 532354338 0.000000e+00 5483
4 TraesCS2A01G204000 chr7A 98.367 3123 35 12 1 3110 31808006 31811125 0.000000e+00 5470
5 TraesCS2A01G204000 chr5A 95.943 2169 65 12 961 3111 439809193 439811356 0.000000e+00 3496
6 TraesCS2A01G204000 chr5A 95.688 1832 44 6 1287 3110 390558227 390560031 0.000000e+00 2913
7 TraesCS2A01G204000 chr5A 99.493 1579 8 0 1531 3109 22978690 22977112 0.000000e+00 2872
8 TraesCS2A01G204000 chr5A 97.861 1169 15 3 1 1161 439808181 439809347 0.000000e+00 2012
9 TraesCS2A01G204000 chr5A 97.933 1161 23 1 1 1161 390556801 390557960 0.000000e+00 2010
10 TraesCS2A01G204000 chr5A 92.004 938 74 1 1 937 457098853 457099790 0.000000e+00 1315
11 TraesCS2A01G204000 chr5A 87.316 339 27 11 962 1288 390557809 390558143 1.180000e-99 374
12 TraesCS2A01G204000 chr3A 95.708 2167 72 12 961 3108 583078017 583080181 0.000000e+00 3467
13 TraesCS2A01G204000 chr3A 97.423 1164 26 3 1 1161 583077009 583078171 0.000000e+00 1980
14 TraesCS2A01G204000 chr6A 96.027 2064 60 12 961 3004 9185379 9187440 0.000000e+00 3338
15 TraesCS2A01G204000 chr6A 98.451 1162 17 1 1 1161 9184372 9185533 0.000000e+00 2045
16 TraesCS2A01G204000 chr4B 93.825 2170 97 19 960 3108 215061563 215059410 0.000000e+00 3230
17 TraesCS2A01G204000 chr4B 92.468 2164 111 15 961 3108 215013543 215011416 0.000000e+00 3046
18 TraesCS2A01G204000 chr4B 95.479 1128 49 2 36 1161 215014516 215013389 0.000000e+00 1799
19 TraesCS2A01G204000 chr4B 95.301 1128 51 2 36 1161 215062535 215061408 0.000000e+00 1788
20 TraesCS2A01G204000 chr1B 99.493 1578 8 0 1531 3108 150371923 150370346 0.000000e+00 2870
21 TraesCS2A01G204000 chr1B 99.643 1121 4 0 1989 3109 150371923 150373043 0.000000e+00 2049
22 TraesCS2A01G204000 chr1B 98.025 405 8 0 1321 1725 235843890 235844294 0.000000e+00 704
23 TraesCS2A01G204000 chr5B 98.458 389 6 0 3107 3495 56316040 56315652 0.000000e+00 686
24 TraesCS2A01G204000 chr3B 98.196 388 7 0 3108 3495 515461374 515460987 0.000000e+00 678
25 TraesCS2A01G204000 chr3B 93.252 163 10 1 3333 3495 751007825 751007664 4.510000e-59 239
26 TraesCS2A01G204000 chr1D 92.768 401 16 1 3108 3495 84147973 84148373 5.060000e-158 568
27 TraesCS2A01G204000 chr2B 86.757 370 35 10 961 1318 124293479 124293846 1.950000e-107 399
28 TraesCS2A01G204000 chr4D 83.117 308 35 13 3185 3489 40333495 40333788 7.440000e-67 265
29 TraesCS2A01G204000 chr3D 93.252 163 10 1 3333 3495 563589222 563589061 4.510000e-59 239


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS2A01G204000 chr2A 180211411 180214905 3494 True 3343.000000 6455 97.902000 1 3495 2 chr2A.!!$R1 3494
1 TraesCS2A01G204000 chr6B 532351218 532354338 3120 False 5483.000000 5483 98.431000 1 3111 1 chr6B.!!$F1 3110
2 TraesCS2A01G204000 chr7A 31808006 31811125 3119 False 5470.000000 5470 98.367000 1 3110 1 chr7A.!!$F1 3109
3 TraesCS2A01G204000 chr5A 22977112 22978690 1578 True 2872.000000 2872 99.493000 1531 3109 1 chr5A.!!$R1 1578
4 TraesCS2A01G204000 chr5A 439808181 439811356 3175 False 2754.000000 3496 96.902000 1 3111 2 chr5A.!!$F3 3110
5 TraesCS2A01G204000 chr5A 390556801 390560031 3230 False 1765.666667 2913 93.645667 1 3110 3 chr5A.!!$F2 3109
6 TraesCS2A01G204000 chr5A 457098853 457099790 937 False 1315.000000 1315 92.004000 1 937 1 chr5A.!!$F1 936
7 TraesCS2A01G204000 chr3A 583077009 583080181 3172 False 2723.500000 3467 96.565500 1 3108 2 chr3A.!!$F1 3107
8 TraesCS2A01G204000 chr6A 9184372 9187440 3068 False 2691.500000 3338 97.239000 1 3004 2 chr6A.!!$F1 3003
9 TraesCS2A01G204000 chr4B 215059410 215062535 3125 True 2509.000000 3230 94.563000 36 3108 2 chr4B.!!$R2 3072
10 TraesCS2A01G204000 chr4B 215011416 215014516 3100 True 2422.500000 3046 93.973500 36 3108 2 chr4B.!!$R1 3072
11 TraesCS2A01G204000 chr1B 150370346 150371923 1577 True 2870.000000 2870 99.493000 1531 3108 1 chr1B.!!$R1 1577
12 TraesCS2A01G204000 chr1B 150371923 150373043 1120 False 2049.000000 2049 99.643000 1989 3109 1 chr1B.!!$F1 1120

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1046 1105 3.194116 CCATGTGAGGGAACATTTGAAGG 59.806 47.826 0.0 0.0 38.75 3.46 F
1047 1106 3.874383 TGTGAGGGAACATTTGAAGGA 57.126 42.857 0.0 0.0 0.00 3.36 F
1049 1108 4.081406 TGTGAGGGAACATTTGAAGGATG 58.919 43.478 0.0 0.0 0.00 3.51 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2076 2279 1.884579 AGTCGACTTTAGGACTGCGAA 59.115 47.619 13.58 0.0 41.71 4.70 R
2192 2395 9.823647 GATACTGGTTACCATATCATCATTAGG 57.176 37.037 19.41 3.9 30.82 2.69 R
3111 3331 9.834628 TCAGATTTGTAATTTTTAGCTTAACGG 57.165 29.630 0.00 0.0 0.00 4.44 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
1039 1098 5.191727 TGTATTTCCATGTGAGGGAACAT 57.808 39.130 0.00 0.00 43.81 2.71
1040 1099 5.579047 TGTATTTCCATGTGAGGGAACATT 58.421 37.500 0.00 0.00 43.81 2.71
1041 1100 6.015918 TGTATTTCCATGTGAGGGAACATTT 58.984 36.000 0.00 0.00 43.81 2.32
1042 1101 4.870123 TTTCCATGTGAGGGAACATTTG 57.130 40.909 0.00 0.00 43.81 2.32
1043 1102 3.805066 TCCATGTGAGGGAACATTTGA 57.195 42.857 0.00 0.00 38.75 2.69
1044 1103 4.111255 TCCATGTGAGGGAACATTTGAA 57.889 40.909 0.00 0.00 38.75 2.69
1045 1104 4.081406 TCCATGTGAGGGAACATTTGAAG 58.919 43.478 0.00 0.00 38.75 3.02
1046 1105 3.194116 CCATGTGAGGGAACATTTGAAGG 59.806 47.826 0.00 0.00 38.75 3.46
1047 1106 3.874383 TGTGAGGGAACATTTGAAGGA 57.126 42.857 0.00 0.00 0.00 3.36
1048 1107 4.387026 TGTGAGGGAACATTTGAAGGAT 57.613 40.909 0.00 0.00 0.00 3.24
1049 1108 4.081406 TGTGAGGGAACATTTGAAGGATG 58.919 43.478 0.00 0.00 0.00 3.51
1050 1109 4.082125 GTGAGGGAACATTTGAAGGATGT 58.918 43.478 0.00 0.00 39.31 3.06
1051 1110 5.222027 TGTGAGGGAACATTTGAAGGATGTA 60.222 40.000 0.00 0.00 36.76 2.29
1052 1111 5.123979 GTGAGGGAACATTTGAAGGATGTAC 59.876 44.000 0.00 0.00 36.76 2.90
1053 1112 5.014123 TGAGGGAACATTTGAAGGATGTACT 59.986 40.000 0.00 0.00 36.76 2.73
1054 1113 5.256474 AGGGAACATTTGAAGGATGTACTG 58.744 41.667 0.00 0.00 36.76 2.74
1055 1114 5.010282 GGGAACATTTGAAGGATGTACTGT 58.990 41.667 0.00 0.00 36.76 3.55
1056 1115 6.012858 AGGGAACATTTGAAGGATGTACTGTA 60.013 38.462 0.00 0.00 36.76 2.74
1057 1116 6.093633 GGGAACATTTGAAGGATGTACTGTAC 59.906 42.308 10.98 10.98 36.76 2.90
1058 1117 6.093633 GGAACATTTGAAGGATGTACTGTACC 59.906 42.308 14.91 0.35 36.76 3.34
1059 1118 6.374417 ACATTTGAAGGATGTACTGTACCT 57.626 37.500 14.91 5.48 36.04 3.08
1060 1119 6.779860 ACATTTGAAGGATGTACTGTACCTT 58.220 36.000 14.91 11.03 44.08 3.50
1061 1120 7.231467 ACATTTGAAGGATGTACTGTACCTTT 58.769 34.615 14.91 3.77 41.90 3.11
1062 1121 7.174946 ACATTTGAAGGATGTACTGTACCTTTG 59.825 37.037 14.91 8.80 41.90 2.77
1063 1122 6.428083 TTGAAGGATGTACTGTACCTTTGA 57.572 37.500 14.91 0.00 41.90 2.69
1064 1123 6.620877 TGAAGGATGTACTGTACCTTTGAT 57.379 37.500 14.91 1.79 41.90 2.57
1065 1124 6.406370 TGAAGGATGTACTGTACCTTTGATG 58.594 40.000 14.91 0.00 41.90 3.07
1066 1125 6.013725 TGAAGGATGTACTGTACCTTTGATGT 60.014 38.462 14.91 0.00 41.90 3.06
1067 1126 7.179516 TGAAGGATGTACTGTACCTTTGATGTA 59.820 37.037 14.91 0.00 41.90 2.29
1068 1127 7.676683 AGGATGTACTGTACCTTTGATGTAT 57.323 36.000 14.91 0.00 0.00 2.29
1069 1128 8.090788 AGGATGTACTGTACCTTTGATGTATT 57.909 34.615 14.91 0.00 0.00 1.89
1070 1129 8.548877 AGGATGTACTGTACCTTTGATGTATTT 58.451 33.333 14.91 0.00 0.00 1.40
1071 1130 8.827677 GGATGTACTGTACCTTTGATGTATTTC 58.172 37.037 14.91 0.00 0.00 2.17
1072 1131 8.732746 ATGTACTGTACCTTTGATGTATTTCC 57.267 34.615 14.91 0.00 0.00 3.13
1073 1132 7.681679 TGTACTGTACCTTTGATGTATTTCCA 58.318 34.615 14.91 0.00 0.00 3.53
1074 1133 8.325787 TGTACTGTACCTTTGATGTATTTCCAT 58.674 33.333 14.91 0.00 0.00 3.41
1075 1134 7.630242 ACTGTACCTTTGATGTATTTCCATG 57.370 36.000 0.00 0.00 0.00 3.66
1076 1135 7.175104 ACTGTACCTTTGATGTATTTCCATGT 58.825 34.615 0.00 0.00 0.00 3.21
1077 1136 7.121168 ACTGTACCTTTGATGTATTTCCATGTG 59.879 37.037 0.00 0.00 0.00 3.21
1078 1137 7.171653 TGTACCTTTGATGTATTTCCATGTGA 58.828 34.615 0.00 0.00 0.00 3.58
1079 1138 6.764308 ACCTTTGATGTATTTCCATGTGAG 57.236 37.500 0.00 0.00 0.00 3.51
1080 1139 5.653769 ACCTTTGATGTATTTCCATGTGAGG 59.346 40.000 0.00 0.00 0.00 3.86
1081 1140 5.068198 CCTTTGATGTATTTCCATGTGAGGG 59.932 44.000 0.00 0.00 0.00 4.30
1082 1141 5.449297 TTGATGTATTTCCATGTGAGGGA 57.551 39.130 0.00 0.00 0.00 4.20
1083 1142 5.449297 TGATGTATTTCCATGTGAGGGAA 57.551 39.130 0.00 0.00 42.49 3.97
1084 1143 5.192927 TGATGTATTTCCATGTGAGGGAAC 58.807 41.667 0.00 0.00 43.81 3.62
1085 1144 4.649267 TGTATTTCCATGTGAGGGAACA 57.351 40.909 0.00 0.00 43.81 3.18
1643 1844 6.119536 ACCACTTTCACATTCACACTTTCTA 58.880 36.000 0.00 0.00 0.00 2.10
1649 1850 7.857734 TTCACATTCACACTTTCTAAGTCAA 57.142 32.000 0.00 0.00 40.46 3.18
2076 2279 4.955450 AGCTGACTCTGACACTATTGATCT 59.045 41.667 0.00 0.00 0.00 2.75
2192 2395 2.288213 GCAAACAAGAAGGGCAAGGTAC 60.288 50.000 0.00 0.00 0.00 3.34
3111 3331 2.755103 CTCAATCCAAACAGCCCCTTAC 59.245 50.000 0.00 0.00 0.00 2.34
3112 3332 1.824852 CAATCCAAACAGCCCCTTACC 59.175 52.381 0.00 0.00 0.00 2.85
3113 3333 0.034477 ATCCAAACAGCCCCTTACCG 60.034 55.000 0.00 0.00 0.00 4.02
3114 3334 1.074248 CCAAACAGCCCCTTACCGT 59.926 57.895 0.00 0.00 0.00 4.83
3115 3335 0.538746 CCAAACAGCCCCTTACCGTT 60.539 55.000 0.00 0.00 0.00 4.44
3116 3336 1.271488 CCAAACAGCCCCTTACCGTTA 60.271 52.381 0.00 0.00 0.00 3.18
3117 3337 2.506444 CAAACAGCCCCTTACCGTTAA 58.494 47.619 0.00 0.00 0.00 2.01
3118 3338 2.484742 AACAGCCCCTTACCGTTAAG 57.515 50.000 0.00 0.00 35.35 1.85
3119 3339 0.035725 ACAGCCCCTTACCGTTAAGC 60.036 55.000 0.00 0.00 34.36 3.09
3120 3340 0.252197 CAGCCCCTTACCGTTAAGCT 59.748 55.000 0.00 0.00 34.36 3.74
3121 3341 1.483415 CAGCCCCTTACCGTTAAGCTA 59.517 52.381 0.00 0.00 34.36 3.32
3122 3342 2.093341 CAGCCCCTTACCGTTAAGCTAA 60.093 50.000 0.00 0.00 34.36 3.09
3123 3343 2.573009 AGCCCCTTACCGTTAAGCTAAA 59.427 45.455 0.00 0.00 34.36 1.85
3124 3344 3.009363 AGCCCCTTACCGTTAAGCTAAAA 59.991 43.478 0.00 0.00 34.36 1.52
3125 3345 3.758023 GCCCCTTACCGTTAAGCTAAAAA 59.242 43.478 0.00 0.00 34.36 1.94
3126 3346 4.400251 GCCCCTTACCGTTAAGCTAAAAAT 59.600 41.667 0.00 0.00 34.36 1.82
3127 3347 5.105635 GCCCCTTACCGTTAAGCTAAAAATT 60.106 40.000 0.00 0.00 34.36 1.82
3128 3348 6.095300 GCCCCTTACCGTTAAGCTAAAAATTA 59.905 38.462 0.00 0.00 34.36 1.40
3129 3349 7.475015 CCCCTTACCGTTAAGCTAAAAATTAC 58.525 38.462 0.00 0.00 34.36 1.89
3130 3350 7.121020 CCCCTTACCGTTAAGCTAAAAATTACA 59.879 37.037 0.00 0.00 34.36 2.41
3131 3351 8.513774 CCCTTACCGTTAAGCTAAAAATTACAA 58.486 33.333 0.00 0.00 34.36 2.41
3132 3352 9.896263 CCTTACCGTTAAGCTAAAAATTACAAA 57.104 29.630 0.00 0.00 34.36 2.83
3136 3356 9.620660 ACCGTTAAGCTAAAAATTACAAATCTG 57.379 29.630 0.00 0.00 0.00 2.90
3137 3357 9.834628 CCGTTAAGCTAAAAATTACAAATCTGA 57.165 29.630 0.00 0.00 0.00 3.27
3152 3372 9.761504 TTACAAATCTGAAATCAAAATTGAGCA 57.238 25.926 1.98 0.23 41.08 4.26
3153 3373 8.665643 ACAAATCTGAAATCAAAATTGAGCAA 57.334 26.923 1.98 0.00 41.08 3.91
3154 3374 8.770828 ACAAATCTGAAATCAAAATTGAGCAAG 58.229 29.630 1.98 0.00 41.08 4.01
3155 3375 8.770828 CAAATCTGAAATCAAAATTGAGCAAGT 58.229 29.630 1.98 0.00 41.08 3.16
3156 3376 8.530269 AATCTGAAATCAAAATTGAGCAAGTC 57.470 30.769 1.98 0.00 41.08 3.01
3157 3377 6.449698 TCTGAAATCAAAATTGAGCAAGTCC 58.550 36.000 1.98 0.00 41.08 3.85
3158 3378 6.266103 TCTGAAATCAAAATTGAGCAAGTCCT 59.734 34.615 1.98 0.00 41.08 3.85
3159 3379 6.819284 TGAAATCAAAATTGAGCAAGTCCTT 58.181 32.000 1.98 0.00 41.08 3.36
3160 3380 6.702723 TGAAATCAAAATTGAGCAAGTCCTTG 59.297 34.615 2.63 2.63 41.08 3.61
3161 3381 6.409524 AATCAAAATTGAGCAAGTCCTTGA 57.590 33.333 11.12 1.78 40.64 3.02
3162 3382 6.600882 ATCAAAATTGAGCAAGTCCTTGAT 57.399 33.333 11.12 4.22 42.44 2.57
3163 3383 7.707624 ATCAAAATTGAGCAAGTCCTTGATA 57.292 32.000 11.12 0.00 39.54 2.15
3164 3384 7.707624 TCAAAATTGAGCAAGTCCTTGATAT 57.292 32.000 11.12 0.00 39.54 1.63
3165 3385 8.806429 TCAAAATTGAGCAAGTCCTTGATATA 57.194 30.769 11.12 0.00 39.54 0.86
3166 3386 9.412460 TCAAAATTGAGCAAGTCCTTGATATAT 57.588 29.630 11.12 0.00 39.54 0.86
3191 3411 7.700322 AGTATACACTTGATTAGCATTGTCG 57.300 36.000 5.50 0.00 0.00 4.35
3192 3412 7.489160 AGTATACACTTGATTAGCATTGTCGA 58.511 34.615 5.50 0.00 0.00 4.20
3193 3413 7.979537 AGTATACACTTGATTAGCATTGTCGAA 59.020 33.333 5.50 0.00 0.00 3.71
3194 3414 7.792374 ATACACTTGATTAGCATTGTCGAAT 57.208 32.000 0.00 0.00 0.00 3.34
3195 3415 6.111768 ACACTTGATTAGCATTGTCGAATC 57.888 37.500 0.00 6.84 0.00 2.52
3196 3416 5.193216 CACTTGATTAGCATTGTCGAATCG 58.807 41.667 0.00 0.00 32.87 3.34
3197 3417 5.005682 CACTTGATTAGCATTGTCGAATCGA 59.994 40.000 0.00 0.00 32.87 3.59
3198 3418 5.755375 ACTTGATTAGCATTGTCGAATCGAT 59.245 36.000 9.10 0.00 38.42 3.59
3199 3419 5.580911 TGATTAGCATTGTCGAATCGATG 57.419 39.130 9.10 4.37 38.42 3.84
3200 3420 5.288804 TGATTAGCATTGTCGAATCGATGA 58.711 37.500 9.10 0.62 38.42 2.92
3201 3421 5.928264 TGATTAGCATTGTCGAATCGATGAT 59.072 36.000 9.10 4.59 38.42 2.45
3202 3422 5.580911 TTAGCATTGTCGAATCGATGATG 57.419 39.130 19.65 19.65 38.42 3.07
3203 3423 3.721035 AGCATTGTCGAATCGATGATGA 58.279 40.909 24.78 6.99 38.42 2.92
3204 3424 3.492383 AGCATTGTCGAATCGATGATGAC 59.508 43.478 24.78 18.21 38.42 3.06
3205 3425 3.660132 GCATTGTCGAATCGATGATGACG 60.660 47.826 24.78 10.08 38.42 4.35
3206 3426 3.414549 TTGTCGAATCGATGATGACGA 57.585 42.857 9.10 12.80 43.65 4.20
3207 3427 2.987046 TGTCGAATCGATGATGACGAG 58.013 47.619 9.10 0.00 42.81 4.18
3208 3428 2.354821 TGTCGAATCGATGATGACGAGT 59.645 45.455 9.10 0.00 42.81 4.18
3209 3429 3.181500 TGTCGAATCGATGATGACGAGTT 60.181 43.478 9.10 0.00 42.81 3.01
3210 3430 3.791887 GTCGAATCGATGATGACGAGTTT 59.208 43.478 9.10 0.00 42.81 2.66
3211 3431 3.791353 TCGAATCGATGATGACGAGTTTG 59.209 43.478 0.00 0.00 42.81 2.93
3212 3432 3.547868 CGAATCGATGATGACGAGTTTGT 59.452 43.478 0.00 0.00 42.81 2.83
3213 3433 4.547021 CGAATCGATGATGACGAGTTTGTG 60.547 45.833 0.00 0.00 42.81 3.33
3214 3434 2.606108 TCGATGATGACGAGTTTGTGG 58.394 47.619 0.00 0.00 34.85 4.17
3215 3435 2.029380 TCGATGATGACGAGTTTGTGGT 60.029 45.455 0.00 0.00 34.85 4.16
3216 3436 2.092681 CGATGATGACGAGTTTGTGGTG 59.907 50.000 0.00 0.00 0.00 4.17
3217 3437 2.900716 TGATGACGAGTTTGTGGTGA 57.099 45.000 0.00 0.00 0.00 4.02
3218 3438 3.401033 TGATGACGAGTTTGTGGTGAT 57.599 42.857 0.00 0.00 0.00 3.06
3219 3439 3.066380 TGATGACGAGTTTGTGGTGATG 58.934 45.455 0.00 0.00 0.00 3.07
3220 3440 1.877637 TGACGAGTTTGTGGTGATGG 58.122 50.000 0.00 0.00 0.00 3.51
3221 3441 1.140052 TGACGAGTTTGTGGTGATGGT 59.860 47.619 0.00 0.00 0.00 3.55
3222 3442 1.531149 GACGAGTTTGTGGTGATGGTG 59.469 52.381 0.00 0.00 0.00 4.17
3223 3443 0.874390 CGAGTTTGTGGTGATGGTGG 59.126 55.000 0.00 0.00 0.00 4.61
3224 3444 1.542328 CGAGTTTGTGGTGATGGTGGA 60.542 52.381 0.00 0.00 0.00 4.02
3225 3445 2.154462 GAGTTTGTGGTGATGGTGGAG 58.846 52.381 0.00 0.00 0.00 3.86
3226 3446 1.774254 AGTTTGTGGTGATGGTGGAGA 59.226 47.619 0.00 0.00 0.00 3.71
3227 3447 2.174639 AGTTTGTGGTGATGGTGGAGAA 59.825 45.455 0.00 0.00 0.00 2.87
3228 3448 2.554032 GTTTGTGGTGATGGTGGAGAAG 59.446 50.000 0.00 0.00 0.00 2.85
3229 3449 0.692476 TGTGGTGATGGTGGAGAAGG 59.308 55.000 0.00 0.00 0.00 3.46
3230 3450 0.035056 GTGGTGATGGTGGAGAAGGG 60.035 60.000 0.00 0.00 0.00 3.95
3231 3451 1.207488 TGGTGATGGTGGAGAAGGGG 61.207 60.000 0.00 0.00 0.00 4.79
3232 3452 0.914417 GGTGATGGTGGAGAAGGGGA 60.914 60.000 0.00 0.00 0.00 4.81
3233 3453 1.216990 GTGATGGTGGAGAAGGGGAT 58.783 55.000 0.00 0.00 0.00 3.85
3234 3454 1.141858 GTGATGGTGGAGAAGGGGATC 59.858 57.143 0.00 0.00 0.00 3.36
3235 3455 1.274358 TGATGGTGGAGAAGGGGATCA 60.274 52.381 0.00 0.00 0.00 2.92
3236 3456 1.141858 GATGGTGGAGAAGGGGATCAC 59.858 57.143 0.00 0.00 0.00 3.06
3237 3457 0.914417 TGGTGGAGAAGGGGATCACC 60.914 60.000 5.61 5.61 45.75 4.02
3238 3458 0.914417 GGTGGAGAAGGGGATCACCA 60.914 60.000 18.46 0.00 45.11 4.17
3239 3459 0.543749 GTGGAGAAGGGGATCACCAG 59.456 60.000 18.46 0.00 40.14 4.00
3240 3460 0.417437 TGGAGAAGGGGATCACCAGA 59.583 55.000 18.46 0.00 42.91 3.86
3241 3461 1.127343 GGAGAAGGGGATCACCAGAG 58.873 60.000 18.46 0.00 42.91 3.35
3242 3462 1.127343 GAGAAGGGGATCACCAGAGG 58.873 60.000 18.46 0.00 42.91 3.69
3243 3463 0.985490 AGAAGGGGATCACCAGAGGC 60.985 60.000 18.46 0.00 42.91 4.70
3244 3464 1.229951 AAGGGGATCACCAGAGGCA 60.230 57.895 18.46 0.00 42.91 4.75
3245 3465 1.566298 AAGGGGATCACCAGAGGCAC 61.566 60.000 18.46 0.00 42.91 5.01
3246 3466 2.300967 GGGGATCACCAGAGGCACA 61.301 63.158 9.87 0.00 42.91 4.57
3247 3467 1.639635 GGGGATCACCAGAGGCACAT 61.640 60.000 9.87 0.00 42.91 3.21
3248 3468 0.179034 GGGATCACCAGAGGCACATC 60.179 60.000 0.00 0.00 39.85 3.06
3249 3469 0.835941 GGATCACCAGAGGCACATCT 59.164 55.000 0.00 0.00 35.97 2.90
3250 3470 1.202627 GGATCACCAGAGGCACATCTC 60.203 57.143 0.00 0.00 35.97 2.75
3251 3471 0.835941 ATCACCAGAGGCACATCTCC 59.164 55.000 0.00 0.00 34.46 3.71
3252 3472 1.222936 CACCAGAGGCACATCTCCC 59.777 63.158 0.00 0.00 34.46 4.30
3253 3473 1.229625 ACCAGAGGCACATCTCCCA 60.230 57.895 0.00 0.00 34.46 4.37
3254 3474 1.222936 CCAGAGGCACATCTCCCAC 59.777 63.158 0.00 0.00 34.46 4.61
3255 3475 1.153489 CAGAGGCACATCTCCCACG 60.153 63.158 0.00 0.00 34.46 4.94
3256 3476 1.610673 AGAGGCACATCTCCCACGT 60.611 57.895 0.00 0.00 34.46 4.49
3257 3477 1.194781 AGAGGCACATCTCCCACGTT 61.195 55.000 0.00 0.00 34.46 3.99
3258 3478 0.535335 GAGGCACATCTCCCACGTTA 59.465 55.000 0.00 0.00 0.00 3.18
3259 3479 1.139058 GAGGCACATCTCCCACGTTAT 59.861 52.381 0.00 0.00 0.00 1.89
3260 3480 1.139058 AGGCACATCTCCCACGTTATC 59.861 52.381 0.00 0.00 0.00 1.75
3261 3481 1.134521 GGCACATCTCCCACGTTATCA 60.135 52.381 0.00 0.00 0.00 2.15
3262 3482 2.485479 GGCACATCTCCCACGTTATCAT 60.485 50.000 0.00 0.00 0.00 2.45
3263 3483 3.206150 GCACATCTCCCACGTTATCATT 58.794 45.455 0.00 0.00 0.00 2.57
3264 3484 3.248602 GCACATCTCCCACGTTATCATTC 59.751 47.826 0.00 0.00 0.00 2.67
3265 3485 4.697514 CACATCTCCCACGTTATCATTCT 58.302 43.478 0.00 0.00 0.00 2.40
3266 3486 4.747108 CACATCTCCCACGTTATCATTCTC 59.253 45.833 0.00 0.00 0.00 2.87
3267 3487 4.202264 ACATCTCCCACGTTATCATTCTCC 60.202 45.833 0.00 0.00 0.00 3.71
3268 3488 3.371034 TCTCCCACGTTATCATTCTCCA 58.629 45.455 0.00 0.00 0.00 3.86
3269 3489 3.967326 TCTCCCACGTTATCATTCTCCAT 59.033 43.478 0.00 0.00 0.00 3.41
3270 3490 4.060900 CTCCCACGTTATCATTCTCCATG 58.939 47.826 0.00 0.00 0.00 3.66
3271 3491 3.141398 CCCACGTTATCATTCTCCATGG 58.859 50.000 4.97 4.97 33.07 3.66
3272 3492 3.181455 CCCACGTTATCATTCTCCATGGA 60.181 47.826 15.27 15.27 33.07 3.41
3273 3493 4.060900 CCACGTTATCATTCTCCATGGAG 58.939 47.826 32.60 32.60 43.21 3.86
3274 3494 3.496130 CACGTTATCATTCTCCATGGAGC 59.504 47.826 33.39 17.35 41.71 4.70
3275 3495 2.733552 CGTTATCATTCTCCATGGAGCG 59.266 50.000 33.39 24.01 41.71 5.03
3276 3496 3.070018 GTTATCATTCTCCATGGAGCGG 58.930 50.000 33.39 23.99 41.71 5.52
3277 3497 1.427809 ATCATTCTCCATGGAGCGGA 58.572 50.000 33.39 27.61 41.71 5.54
3278 3498 0.465705 TCATTCTCCATGGAGCGGAC 59.534 55.000 33.39 0.00 41.71 4.79
3279 3499 0.877649 CATTCTCCATGGAGCGGACG 60.878 60.000 33.39 17.06 41.71 4.79
3280 3500 2.032860 ATTCTCCATGGAGCGGACGG 62.033 60.000 33.39 12.42 41.71 4.79
3281 3501 4.899239 CTCCATGGAGCGGACGGC 62.899 72.222 28.45 0.00 44.05 5.68
3284 3504 4.899239 CATGGAGCGGACGGCCTC 62.899 72.222 5.33 0.00 45.17 4.70
3288 3508 4.070552 GAGCGGACGGCCTCAGTT 62.071 66.667 5.33 0.00 45.17 3.16
3289 3509 2.678934 AGCGGACGGCCTCAGTTA 60.679 61.111 5.33 0.00 45.17 2.24
3290 3510 2.202756 GCGGACGGCCTCAGTTAG 60.203 66.667 5.33 0.00 34.80 2.34
3291 3511 2.202756 CGGACGGCCTCAGTTAGC 60.203 66.667 5.33 0.00 0.00 3.09
3292 3512 2.978824 GGACGGCCTCAGTTAGCA 59.021 61.111 0.00 0.00 0.00 3.49
3293 3513 1.522569 GGACGGCCTCAGTTAGCAT 59.477 57.895 0.00 0.00 0.00 3.79
3294 3514 0.530870 GGACGGCCTCAGTTAGCATC 60.531 60.000 0.00 0.00 0.00 3.91
3295 3515 0.175760 GACGGCCTCAGTTAGCATCA 59.824 55.000 0.00 0.00 0.00 3.07
3296 3516 0.833287 ACGGCCTCAGTTAGCATCAT 59.167 50.000 0.00 0.00 0.00 2.45
3297 3517 1.224075 CGGCCTCAGTTAGCATCATG 58.776 55.000 0.00 0.00 0.00 3.07
3298 3518 1.602311 GGCCTCAGTTAGCATCATGG 58.398 55.000 0.00 0.00 0.00 3.66
3299 3519 0.950116 GCCTCAGTTAGCATCATGGC 59.050 55.000 0.00 0.00 0.00 4.40
3301 3521 2.492012 CCTCAGTTAGCATCATGGCTC 58.508 52.381 0.00 0.00 44.54 4.70
3302 3522 2.492012 CTCAGTTAGCATCATGGCTCC 58.508 52.381 0.00 0.00 44.54 4.70
3303 3523 2.104451 CTCAGTTAGCATCATGGCTCCT 59.896 50.000 0.00 0.00 44.54 3.69
3304 3524 2.103771 TCAGTTAGCATCATGGCTCCTC 59.896 50.000 0.00 0.00 44.54 3.71
3305 3525 1.419387 AGTTAGCATCATGGCTCCTCC 59.581 52.381 0.00 0.00 44.54 4.30
3313 3533 2.997315 TGGCTCCTCCACCAGTCG 60.997 66.667 0.00 0.00 40.72 4.18
3314 3534 2.680352 GGCTCCTCCACCAGTCGA 60.680 66.667 0.00 0.00 34.01 4.20
3315 3535 2.060980 GGCTCCTCCACCAGTCGAT 61.061 63.158 0.00 0.00 34.01 3.59
3316 3536 1.439644 GCTCCTCCACCAGTCGATC 59.560 63.158 0.00 0.00 0.00 3.69
3317 3537 1.323271 GCTCCTCCACCAGTCGATCA 61.323 60.000 0.00 0.00 0.00 2.92
3318 3538 0.457851 CTCCTCCACCAGTCGATCAC 59.542 60.000 0.00 0.00 0.00 3.06
3319 3539 0.039764 TCCTCCACCAGTCGATCACT 59.960 55.000 0.00 0.00 34.67 3.41
3327 3547 0.792640 CAGTCGATCACTGTTGTGCC 59.207 55.000 13.84 0.00 46.81 5.01
3328 3548 0.392706 AGTCGATCACTGTTGTGCCA 59.607 50.000 0.00 0.00 43.49 4.92
3329 3549 1.202639 AGTCGATCACTGTTGTGCCAA 60.203 47.619 0.00 0.00 43.49 4.52
3330 3550 1.806542 GTCGATCACTGTTGTGCCAAT 59.193 47.619 0.00 0.00 43.49 3.16
3331 3551 2.226437 GTCGATCACTGTTGTGCCAATT 59.774 45.455 0.00 0.00 43.49 2.32
3332 3552 2.226200 TCGATCACTGTTGTGCCAATTG 59.774 45.455 0.00 0.00 43.49 2.32
3333 3553 2.331194 GATCACTGTTGTGCCAATTGC 58.669 47.619 0.00 0.00 43.49 3.56
3381 3601 8.763984 ATACTGTACTTGTATACAACCTAGCT 57.236 34.615 14.35 0.00 34.68 3.32
3382 3602 9.857656 ATACTGTACTTGTATACAACCTAGCTA 57.142 33.333 14.35 0.00 34.68 3.32
3383 3603 7.994194 ACTGTACTTGTATACAACCTAGCTAC 58.006 38.462 14.35 9.86 34.68 3.58
3384 3604 7.067981 ACTGTACTTGTATACAACCTAGCTACC 59.932 40.741 14.35 0.00 34.68 3.18
3385 3605 5.866159 ACTTGTATACAACCTAGCTACCC 57.134 43.478 14.35 0.00 0.00 3.69
3386 3606 5.274822 ACTTGTATACAACCTAGCTACCCA 58.725 41.667 14.35 0.00 0.00 4.51
3387 3607 5.128335 ACTTGTATACAACCTAGCTACCCAC 59.872 44.000 14.35 0.00 0.00 4.61
3388 3608 4.612401 TGTATACAACCTAGCTACCCACA 58.388 43.478 2.20 0.00 0.00 4.17
3389 3609 5.213519 TGTATACAACCTAGCTACCCACAT 58.786 41.667 2.20 0.00 0.00 3.21
3390 3610 5.664006 TGTATACAACCTAGCTACCCACATT 59.336 40.000 2.20 0.00 0.00 2.71
3391 3611 6.840181 TGTATACAACCTAGCTACCCACATTA 59.160 38.462 2.20 0.00 0.00 1.90
3392 3612 7.511371 TGTATACAACCTAGCTACCCACATTAT 59.489 37.037 2.20 0.00 0.00 1.28
3393 3613 5.710409 ACAACCTAGCTACCCACATTATT 57.290 39.130 0.00 0.00 0.00 1.40
3394 3614 6.074698 ACAACCTAGCTACCCACATTATTT 57.925 37.500 0.00 0.00 0.00 1.40
3395 3615 5.885912 ACAACCTAGCTACCCACATTATTTG 59.114 40.000 0.00 0.00 0.00 2.32
3396 3616 5.710409 ACCTAGCTACCCACATTATTTGT 57.290 39.130 0.00 0.00 39.91 2.83
3397 3617 6.074698 ACCTAGCTACCCACATTATTTGTT 57.925 37.500 0.00 0.00 36.00 2.83
3398 3618 6.490492 ACCTAGCTACCCACATTATTTGTTT 58.510 36.000 0.00 0.00 36.00 2.83
3399 3619 7.635648 ACCTAGCTACCCACATTATTTGTTTA 58.364 34.615 0.00 0.00 36.00 2.01
3400 3620 7.555195 ACCTAGCTACCCACATTATTTGTTTAC 59.445 37.037 0.00 0.00 36.00 2.01
3401 3621 7.773690 CCTAGCTACCCACATTATTTGTTTACT 59.226 37.037 0.00 0.00 36.00 2.24
3402 3622 9.826574 CTAGCTACCCACATTATTTGTTTACTA 57.173 33.333 0.00 0.00 36.00 1.82
3404 3624 9.120538 AGCTACCCACATTATTTGTTTACTATG 57.879 33.333 0.00 0.00 36.00 2.23
3405 3625 7.860872 GCTACCCACATTATTTGTTTACTATGC 59.139 37.037 0.00 0.00 36.00 3.14
3406 3626 7.710676 ACCCACATTATTTGTTTACTATGCA 57.289 32.000 0.00 0.00 36.00 3.96
3407 3627 8.128322 ACCCACATTATTTGTTTACTATGCAA 57.872 30.769 0.00 0.00 36.00 4.08
3408 3628 8.250332 ACCCACATTATTTGTTTACTATGCAAG 58.750 33.333 0.00 0.00 36.00 4.01
3409 3629 8.465999 CCCACATTATTTGTTTACTATGCAAGA 58.534 33.333 0.00 0.00 36.00 3.02
3418 3638 8.437360 TTGTTTACTATGCAAGATAGATGTGG 57.563 34.615 0.00 0.00 0.00 4.17
3419 3639 7.564793 TGTTTACTATGCAAGATAGATGTGGT 58.435 34.615 0.00 0.00 0.00 4.16
3420 3640 8.700973 TGTTTACTATGCAAGATAGATGTGGTA 58.299 33.333 0.00 0.00 0.00 3.25
3421 3641 8.979574 GTTTACTATGCAAGATAGATGTGGTAC 58.020 37.037 0.00 0.00 0.00 3.34
3422 3642 6.102897 ACTATGCAAGATAGATGTGGTACC 57.897 41.667 4.43 4.43 0.00 3.34
3423 3643 5.602561 ACTATGCAAGATAGATGTGGTACCA 59.397 40.000 11.60 11.60 0.00 3.25
3424 3644 4.406648 TGCAAGATAGATGTGGTACCAG 57.593 45.455 16.93 0.00 0.00 4.00
3425 3645 3.774766 TGCAAGATAGATGTGGTACCAGT 59.225 43.478 16.93 7.20 0.00 4.00
3426 3646 4.959839 TGCAAGATAGATGTGGTACCAGTA 59.040 41.667 16.93 8.16 0.00 2.74
3427 3647 5.423931 TGCAAGATAGATGTGGTACCAGTAA 59.576 40.000 16.93 4.39 0.00 2.24
3428 3648 5.986135 GCAAGATAGATGTGGTACCAGTAAG 59.014 44.000 16.93 0.00 0.00 2.34
3429 3649 6.183360 GCAAGATAGATGTGGTACCAGTAAGA 60.183 42.308 16.93 1.07 0.00 2.10
3430 3650 7.632898 GCAAGATAGATGTGGTACCAGTAAGAA 60.633 40.741 16.93 0.00 0.00 2.52
3431 3651 7.349412 AGATAGATGTGGTACCAGTAAGAAC 57.651 40.000 16.93 1.66 0.00 3.01
3432 3652 7.126733 AGATAGATGTGGTACCAGTAAGAACT 58.873 38.462 16.93 7.93 35.91 3.01
3433 3653 5.662674 AGATGTGGTACCAGTAAGAACTC 57.337 43.478 16.93 0.01 31.97 3.01
3434 3654 5.084519 AGATGTGGTACCAGTAAGAACTCA 58.915 41.667 16.93 6.68 31.97 3.41
3435 3655 5.721960 AGATGTGGTACCAGTAAGAACTCAT 59.278 40.000 16.93 11.63 31.97 2.90
3436 3656 5.147330 TGTGGTACCAGTAAGAACTCATG 57.853 43.478 16.93 0.00 31.97 3.07
3437 3657 4.591498 TGTGGTACCAGTAAGAACTCATGT 59.409 41.667 16.93 0.00 31.97 3.21
3438 3658 5.071250 TGTGGTACCAGTAAGAACTCATGTT 59.929 40.000 16.93 0.00 39.42 2.71
3439 3659 5.408604 GTGGTACCAGTAAGAACTCATGTTG 59.591 44.000 16.93 0.00 36.39 3.33
3440 3660 4.392138 GGTACCAGTAAGAACTCATGTTGC 59.608 45.833 7.15 0.00 36.39 4.17
3441 3661 4.357918 ACCAGTAAGAACTCATGTTGCT 57.642 40.909 0.00 0.00 36.39 3.91
3442 3662 4.718961 ACCAGTAAGAACTCATGTTGCTT 58.281 39.130 0.00 0.00 36.39 3.91
3443 3663 5.133221 ACCAGTAAGAACTCATGTTGCTTT 58.867 37.500 0.00 0.00 36.39 3.51
3444 3664 6.296026 ACCAGTAAGAACTCATGTTGCTTTA 58.704 36.000 0.00 0.00 36.39 1.85
3445 3665 6.428159 ACCAGTAAGAACTCATGTTGCTTTAG 59.572 38.462 0.00 0.00 36.39 1.85
3446 3666 6.650807 CCAGTAAGAACTCATGTTGCTTTAGA 59.349 38.462 0.00 0.00 36.39 2.10
3447 3667 7.335422 CCAGTAAGAACTCATGTTGCTTTAGAT 59.665 37.037 0.00 0.00 36.39 1.98
3448 3668 9.371136 CAGTAAGAACTCATGTTGCTTTAGATA 57.629 33.333 0.00 0.00 36.39 1.98
3449 3669 9.372369 AGTAAGAACTCATGTTGCTTTAGATAC 57.628 33.333 0.00 0.00 36.39 2.24
3450 3670 9.151471 GTAAGAACTCATGTTGCTTTAGATACA 57.849 33.333 0.00 0.00 36.39 2.29
3451 3671 7.840342 AGAACTCATGTTGCTTTAGATACAG 57.160 36.000 0.00 0.00 36.39 2.74
3452 3672 7.615403 AGAACTCATGTTGCTTTAGATACAGA 58.385 34.615 0.00 0.00 36.39 3.41
3453 3673 7.763528 AGAACTCATGTTGCTTTAGATACAGAG 59.236 37.037 0.00 0.00 36.39 3.35
3454 3674 6.940739 ACTCATGTTGCTTTAGATACAGAGT 58.059 36.000 0.00 0.00 30.95 3.24
3455 3675 8.067751 ACTCATGTTGCTTTAGATACAGAGTA 57.932 34.615 0.00 0.00 32.48 2.59
3456 3676 8.700051 ACTCATGTTGCTTTAGATACAGAGTAT 58.300 33.333 0.00 0.00 32.48 2.12
3489 3709 9.516314 TGACTGAATTTTCATATACAGTACTCG 57.484 33.333 0.00 0.00 38.43 4.18
3490 3710 8.873215 ACTGAATTTTCATATACAGTACTCGG 57.127 34.615 0.00 0.00 36.94 4.63
3491 3711 8.475639 ACTGAATTTTCATATACAGTACTCGGT 58.524 33.333 0.00 0.00 36.94 4.69
3492 3712 8.867112 TGAATTTTCATATACAGTACTCGGTC 57.133 34.615 0.00 0.00 31.01 4.79
3493 3713 8.692710 TGAATTTTCATATACAGTACTCGGTCT 58.307 33.333 0.00 0.00 31.01 3.85
3494 3714 9.530633 GAATTTTCATATACAGTACTCGGTCTT 57.469 33.333 0.00 0.00 0.00 3.01
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
1039 1098 6.833041 TCAAAGGTACAGTACATCCTTCAAA 58.167 36.000 12.89 0.00 39.05 2.69
1040 1099 6.428083 TCAAAGGTACAGTACATCCTTCAA 57.572 37.500 12.89 0.00 39.05 2.69
1041 1100 6.013725 ACATCAAAGGTACAGTACATCCTTCA 60.014 38.462 12.89 0.00 39.05 3.02
1042 1101 6.407202 ACATCAAAGGTACAGTACATCCTTC 58.593 40.000 12.89 0.00 39.05 3.46
1043 1102 6.374417 ACATCAAAGGTACAGTACATCCTT 57.626 37.500 12.89 4.27 41.33 3.36
1044 1103 7.676683 ATACATCAAAGGTACAGTACATCCT 57.323 36.000 12.89 0.00 0.00 3.24
1045 1104 8.732746 AAATACATCAAAGGTACAGTACATCC 57.267 34.615 12.89 0.00 0.00 3.51
1046 1105 8.827677 GGAAATACATCAAAGGTACAGTACATC 58.172 37.037 12.89 0.00 0.00 3.06
1047 1106 8.325787 TGGAAATACATCAAAGGTACAGTACAT 58.674 33.333 12.89 2.11 0.00 2.29
1048 1107 7.681679 TGGAAATACATCAAAGGTACAGTACA 58.318 34.615 12.89 0.00 0.00 2.90
1049 1108 8.612619 CATGGAAATACATCAAAGGTACAGTAC 58.387 37.037 1.59 1.59 0.00 2.73
1050 1109 8.325787 ACATGGAAATACATCAAAGGTACAGTA 58.674 33.333 0.00 0.00 0.00 2.74
1051 1110 7.121168 CACATGGAAATACATCAAAGGTACAGT 59.879 37.037 0.00 0.00 0.00 3.55
1052 1111 7.336679 TCACATGGAAATACATCAAAGGTACAG 59.663 37.037 0.00 0.00 0.00 2.74
1053 1112 7.171653 TCACATGGAAATACATCAAAGGTACA 58.828 34.615 0.00 0.00 0.00 2.90
1054 1113 7.201732 CCTCACATGGAAATACATCAAAGGTAC 60.202 40.741 0.00 0.00 0.00 3.34
1055 1114 6.828273 CCTCACATGGAAATACATCAAAGGTA 59.172 38.462 0.00 0.00 0.00 3.08
1056 1115 5.653769 CCTCACATGGAAATACATCAAAGGT 59.346 40.000 0.00 0.00 0.00 3.50
1057 1116 5.068198 CCCTCACATGGAAATACATCAAAGG 59.932 44.000 0.00 0.00 0.00 3.11
1058 1117 5.887598 TCCCTCACATGGAAATACATCAAAG 59.112 40.000 0.00 0.00 0.00 2.77
1059 1118 5.825532 TCCCTCACATGGAAATACATCAAA 58.174 37.500 0.00 0.00 0.00 2.69
1060 1119 5.449297 TCCCTCACATGGAAATACATCAA 57.551 39.130 0.00 0.00 0.00 2.57
1061 1120 5.192927 GTTCCCTCACATGGAAATACATCA 58.807 41.667 0.00 0.00 43.24 3.07
1062 1121 5.192927 TGTTCCCTCACATGGAAATACATC 58.807 41.667 0.00 0.00 43.24 3.06
1063 1122 5.191727 TGTTCCCTCACATGGAAATACAT 57.808 39.130 0.00 0.00 43.24 2.29
1064 1123 4.649267 TGTTCCCTCACATGGAAATACA 57.351 40.909 0.00 0.00 43.24 2.29
1065 1124 6.152661 TCAAATGTTCCCTCACATGGAAATAC 59.847 38.462 0.00 0.00 43.24 1.89
1066 1125 6.252233 TCAAATGTTCCCTCACATGGAAATA 58.748 36.000 0.00 0.00 43.24 1.40
1067 1126 5.085920 TCAAATGTTCCCTCACATGGAAAT 58.914 37.500 0.00 0.00 43.24 2.17
1068 1127 4.478203 TCAAATGTTCCCTCACATGGAAA 58.522 39.130 0.00 0.00 43.24 3.13
1069 1128 4.111255 TCAAATGTTCCCTCACATGGAA 57.889 40.909 0.00 0.00 37.46 3.53
1070 1129 3.805066 TCAAATGTTCCCTCACATGGA 57.195 42.857 0.00 0.00 37.46 3.41
1071 1130 3.194116 CCTTCAAATGTTCCCTCACATGG 59.806 47.826 0.00 0.00 37.46 3.66
1072 1131 4.081406 TCCTTCAAATGTTCCCTCACATG 58.919 43.478 0.00 0.00 37.46 3.21
1073 1132 4.387026 TCCTTCAAATGTTCCCTCACAT 57.613 40.909 0.00 0.00 39.17 3.21
1074 1133 3.874383 TCCTTCAAATGTTCCCTCACA 57.126 42.857 0.00 0.00 0.00 3.58
1075 1134 4.082125 ACATCCTTCAAATGTTCCCTCAC 58.918 43.478 0.00 0.00 33.62 3.51
1076 1135 4.387026 ACATCCTTCAAATGTTCCCTCA 57.613 40.909 0.00 0.00 33.62 3.86
1077 1136 5.355350 CAGTACATCCTTCAAATGTTCCCTC 59.645 44.000 0.00 0.00 38.31 4.30
1078 1137 5.222130 ACAGTACATCCTTCAAATGTTCCCT 60.222 40.000 0.00 0.00 38.31 4.20
1079 1138 5.010282 ACAGTACATCCTTCAAATGTTCCC 58.990 41.667 0.00 0.00 38.31 3.97
1080 1139 6.093633 GGTACAGTACATCCTTCAAATGTTCC 59.906 42.308 12.89 0.00 38.31 3.62
1081 1140 6.879458 AGGTACAGTACATCCTTCAAATGTTC 59.121 38.462 12.89 0.00 38.31 3.18
1082 1141 6.779860 AGGTACAGTACATCCTTCAAATGTT 58.220 36.000 12.89 0.00 38.31 2.71
1083 1142 6.374417 AGGTACAGTACATCCTTCAAATGT 57.626 37.500 12.89 0.00 40.37 2.71
1084 1143 7.390440 TCAAAGGTACAGTACATCCTTCAAATG 59.610 37.037 12.89 3.11 39.05 2.32
1085 1144 7.458397 TCAAAGGTACAGTACATCCTTCAAAT 58.542 34.615 12.89 0.00 39.05 2.32
2076 2279 1.884579 AGTCGACTTTAGGACTGCGAA 59.115 47.619 13.58 0.00 41.71 4.70
2192 2395 9.823647 GATACTGGTTACCATATCATCATTAGG 57.176 37.037 19.41 3.90 30.82 2.69
3111 3331 9.834628 TCAGATTTGTAATTTTTAGCTTAACGG 57.165 29.630 0.00 0.00 0.00 4.44
3126 3346 9.761504 TGCTCAATTTTGATTTCAGATTTGTAA 57.238 25.926 0.00 0.00 36.46 2.41
3127 3347 9.761504 TTGCTCAATTTTGATTTCAGATTTGTA 57.238 25.926 0.00 0.00 36.46 2.41
3128 3348 8.665643 TTGCTCAATTTTGATTTCAGATTTGT 57.334 26.923 0.00 0.00 36.46 2.83
3129 3349 8.770828 ACTTGCTCAATTTTGATTTCAGATTTG 58.229 29.630 0.00 1.42 36.46 2.32
3130 3350 8.897872 ACTTGCTCAATTTTGATTTCAGATTT 57.102 26.923 0.00 0.00 36.46 2.17
3131 3351 7.601508 GGACTTGCTCAATTTTGATTTCAGATT 59.398 33.333 0.00 0.00 36.46 2.40
3132 3352 7.039223 AGGACTTGCTCAATTTTGATTTCAGAT 60.039 33.333 0.00 0.00 36.46 2.90
3133 3353 6.266103 AGGACTTGCTCAATTTTGATTTCAGA 59.734 34.615 0.00 0.00 36.46 3.27
3134 3354 6.453092 AGGACTTGCTCAATTTTGATTTCAG 58.547 36.000 0.00 0.00 36.46 3.02
3135 3355 6.409524 AGGACTTGCTCAATTTTGATTTCA 57.590 33.333 0.00 0.00 36.46 2.69
3136 3356 6.925165 TCAAGGACTTGCTCAATTTTGATTTC 59.075 34.615 7.18 0.00 40.24 2.17
3137 3357 6.819284 TCAAGGACTTGCTCAATTTTGATTT 58.181 32.000 7.18 0.00 40.24 2.17
3138 3358 6.409524 TCAAGGACTTGCTCAATTTTGATT 57.590 33.333 7.18 0.00 40.24 2.57
3139 3359 6.600882 ATCAAGGACTTGCTCAATTTTGAT 57.399 33.333 7.18 0.00 40.24 2.57
3140 3360 7.707624 ATATCAAGGACTTGCTCAATTTTGA 57.292 32.000 7.18 0.00 40.24 2.69
3165 3385 9.411801 CGACAATGCTAATCAAGTGTATACTAT 57.588 33.333 4.17 0.00 35.69 2.12
3166 3386 8.626526 TCGACAATGCTAATCAAGTGTATACTA 58.373 33.333 4.17 0.00 35.69 1.82
3167 3387 7.489160 TCGACAATGCTAATCAAGTGTATACT 58.511 34.615 4.17 0.00 39.32 2.12
3168 3388 7.694388 TCGACAATGCTAATCAAGTGTATAC 57.306 36.000 0.00 0.00 30.10 1.47
3169 3389 8.887036 ATTCGACAATGCTAATCAAGTGTATA 57.113 30.769 0.00 0.00 30.10 1.47
3170 3390 7.306807 CGATTCGACAATGCTAATCAAGTGTAT 60.307 37.037 0.00 0.00 30.10 2.29
3171 3391 6.019881 CGATTCGACAATGCTAATCAAGTGTA 60.020 38.462 0.00 0.00 30.10 2.90
3172 3392 5.220472 CGATTCGACAATGCTAATCAAGTGT 60.220 40.000 0.00 0.00 31.90 3.55
3173 3393 5.005682 TCGATTCGACAATGCTAATCAAGTG 59.994 40.000 4.29 0.00 0.00 3.16
3174 3394 5.109210 TCGATTCGACAATGCTAATCAAGT 58.891 37.500 4.29 0.00 0.00 3.16
3175 3395 5.641777 TCGATTCGACAATGCTAATCAAG 57.358 39.130 4.29 0.00 0.00 3.02
3176 3396 5.752955 TCATCGATTCGACAATGCTAATCAA 59.247 36.000 11.56 0.00 39.18 2.57
3177 3397 5.288804 TCATCGATTCGACAATGCTAATCA 58.711 37.500 11.56 0.00 39.18 2.57
3178 3398 5.829233 TCATCGATTCGACAATGCTAATC 57.171 39.130 11.56 0.00 39.18 1.75
3179 3399 5.928264 TCATCATCGATTCGACAATGCTAAT 59.072 36.000 19.90 2.83 39.18 1.73
3180 3400 5.175673 GTCATCATCGATTCGACAATGCTAA 59.824 40.000 19.90 7.50 39.18 3.09
3181 3401 4.681483 GTCATCATCGATTCGACAATGCTA 59.319 41.667 19.90 8.01 39.18 3.49
3182 3402 3.492383 GTCATCATCGATTCGACAATGCT 59.508 43.478 19.90 3.95 39.18 3.79
3183 3403 3.660132 CGTCATCATCGATTCGACAATGC 60.660 47.826 19.90 15.62 39.18 3.56
3184 3404 3.730715 TCGTCATCATCGATTCGACAATG 59.269 43.478 11.56 16.43 39.18 2.82
3185 3405 3.964909 TCGTCATCATCGATTCGACAAT 58.035 40.909 11.56 5.11 39.18 2.71
3186 3406 3.181500 ACTCGTCATCATCGATTCGACAA 60.181 43.478 11.56 2.73 39.18 3.18
3187 3407 2.354821 ACTCGTCATCATCGATTCGACA 59.645 45.455 11.56 1.23 39.18 4.35
3188 3408 2.988343 ACTCGTCATCATCGATTCGAC 58.012 47.619 11.56 1.76 39.18 4.20
3189 3409 3.692791 AACTCGTCATCATCGATTCGA 57.307 42.857 11.73 11.73 41.13 3.71
3190 3410 3.547868 ACAAACTCGTCATCATCGATTCG 59.452 43.478 0.00 0.00 36.73 3.34
3191 3411 4.259970 CCACAAACTCGTCATCATCGATTC 60.260 45.833 0.00 0.00 36.73 2.52
3192 3412 3.618594 CCACAAACTCGTCATCATCGATT 59.381 43.478 0.00 0.00 36.73 3.34
3193 3413 3.190079 CCACAAACTCGTCATCATCGAT 58.810 45.455 0.00 0.00 36.73 3.59
3194 3414 2.029380 ACCACAAACTCGTCATCATCGA 60.029 45.455 0.00 0.00 35.96 3.59
3195 3415 2.092681 CACCACAAACTCGTCATCATCG 59.907 50.000 0.00 0.00 0.00 3.84
3196 3416 3.325870 TCACCACAAACTCGTCATCATC 58.674 45.455 0.00 0.00 0.00 2.92
3197 3417 3.401033 TCACCACAAACTCGTCATCAT 57.599 42.857 0.00 0.00 0.00 2.45
3198 3418 2.900716 TCACCACAAACTCGTCATCA 57.099 45.000 0.00 0.00 0.00 3.07
3199 3419 2.416547 CCATCACCACAAACTCGTCATC 59.583 50.000 0.00 0.00 0.00 2.92
3200 3420 2.224523 ACCATCACCACAAACTCGTCAT 60.225 45.455 0.00 0.00 0.00 3.06
3201 3421 1.140052 ACCATCACCACAAACTCGTCA 59.860 47.619 0.00 0.00 0.00 4.35
3202 3422 1.531149 CACCATCACCACAAACTCGTC 59.469 52.381 0.00 0.00 0.00 4.20
3203 3423 1.593196 CACCATCACCACAAACTCGT 58.407 50.000 0.00 0.00 0.00 4.18
3204 3424 0.874390 CCACCATCACCACAAACTCG 59.126 55.000 0.00 0.00 0.00 4.18
3205 3425 2.154462 CTCCACCATCACCACAAACTC 58.846 52.381 0.00 0.00 0.00 3.01
3206 3426 1.774254 TCTCCACCATCACCACAAACT 59.226 47.619 0.00 0.00 0.00 2.66
3207 3427 2.270352 TCTCCACCATCACCACAAAC 57.730 50.000 0.00 0.00 0.00 2.93
3208 3428 2.488891 CCTTCTCCACCATCACCACAAA 60.489 50.000 0.00 0.00 0.00 2.83
3209 3429 1.073763 CCTTCTCCACCATCACCACAA 59.926 52.381 0.00 0.00 0.00 3.33
3210 3430 0.692476 CCTTCTCCACCATCACCACA 59.308 55.000 0.00 0.00 0.00 4.17
3211 3431 0.035056 CCCTTCTCCACCATCACCAC 60.035 60.000 0.00 0.00 0.00 4.16
3212 3432 1.207488 CCCCTTCTCCACCATCACCA 61.207 60.000 0.00 0.00 0.00 4.17
3213 3433 0.914417 TCCCCTTCTCCACCATCACC 60.914 60.000 0.00 0.00 0.00 4.02
3214 3434 1.141858 GATCCCCTTCTCCACCATCAC 59.858 57.143 0.00 0.00 0.00 3.06
3215 3435 1.274358 TGATCCCCTTCTCCACCATCA 60.274 52.381 0.00 0.00 0.00 3.07
3216 3436 1.141858 GTGATCCCCTTCTCCACCATC 59.858 57.143 0.00 0.00 0.00 3.51
3217 3437 1.216990 GTGATCCCCTTCTCCACCAT 58.783 55.000 0.00 0.00 0.00 3.55
3218 3438 0.914417 GGTGATCCCCTTCTCCACCA 60.914 60.000 0.00 0.00 44.83 4.17
3219 3439 0.914417 TGGTGATCCCCTTCTCCACC 60.914 60.000 0.00 0.00 45.47 4.61
3220 3440 0.543749 CTGGTGATCCCCTTCTCCAC 59.456 60.000 0.00 0.00 35.05 4.02
3221 3441 0.417437 TCTGGTGATCCCCTTCTCCA 59.583 55.000 0.00 0.00 37.03 3.86
3222 3442 1.127343 CTCTGGTGATCCCCTTCTCC 58.873 60.000 0.00 0.00 0.00 3.71
3223 3443 1.127343 CCTCTGGTGATCCCCTTCTC 58.873 60.000 0.00 0.00 0.00 2.87
3224 3444 0.985490 GCCTCTGGTGATCCCCTTCT 60.985 60.000 0.00 0.00 0.00 2.85
3225 3445 1.274703 TGCCTCTGGTGATCCCCTTC 61.275 60.000 0.00 0.00 0.00 3.46
3226 3446 1.229951 TGCCTCTGGTGATCCCCTT 60.230 57.895 0.00 0.00 0.00 3.95
3227 3447 1.997874 GTGCCTCTGGTGATCCCCT 60.998 63.158 0.00 0.00 0.00 4.79
3228 3448 1.639635 ATGTGCCTCTGGTGATCCCC 61.640 60.000 0.00 0.00 0.00 4.81
3229 3449 0.179034 GATGTGCCTCTGGTGATCCC 60.179 60.000 0.00 0.00 0.00 3.85
3230 3450 0.835941 AGATGTGCCTCTGGTGATCC 59.164 55.000 0.00 0.00 0.00 3.36
3231 3451 1.202627 GGAGATGTGCCTCTGGTGATC 60.203 57.143 0.00 0.00 33.79 2.92
3232 3452 0.835941 GGAGATGTGCCTCTGGTGAT 59.164 55.000 0.00 0.00 33.79 3.06
3233 3453 1.267574 GGGAGATGTGCCTCTGGTGA 61.268 60.000 0.00 0.00 33.79 4.02
3234 3454 1.222936 GGGAGATGTGCCTCTGGTG 59.777 63.158 0.00 0.00 33.79 4.17
3235 3455 1.229625 TGGGAGATGTGCCTCTGGT 60.230 57.895 1.13 0.00 34.49 4.00
3236 3456 1.222936 GTGGGAGATGTGCCTCTGG 59.777 63.158 1.13 0.00 34.49 3.86
3237 3457 1.153489 CGTGGGAGATGTGCCTCTG 60.153 63.158 1.13 0.00 34.49 3.35
3238 3458 1.194781 AACGTGGGAGATGTGCCTCT 61.195 55.000 1.13 0.00 34.49 3.69
3239 3459 0.535335 TAACGTGGGAGATGTGCCTC 59.465 55.000 1.13 0.00 34.49 4.70
3240 3460 1.139058 GATAACGTGGGAGATGTGCCT 59.861 52.381 1.13 0.00 34.49 4.75
3241 3461 1.134521 TGATAACGTGGGAGATGTGCC 60.135 52.381 0.00 0.00 33.79 5.01
3242 3462 2.309528 TGATAACGTGGGAGATGTGC 57.690 50.000 0.00 0.00 0.00 4.57
3243 3463 4.697514 AGAATGATAACGTGGGAGATGTG 58.302 43.478 0.00 0.00 0.00 3.21
3244 3464 4.202264 GGAGAATGATAACGTGGGAGATGT 60.202 45.833 0.00 0.00 0.00 3.06
3245 3465 4.202253 TGGAGAATGATAACGTGGGAGATG 60.202 45.833 0.00 0.00 0.00 2.90
3246 3466 3.967326 TGGAGAATGATAACGTGGGAGAT 59.033 43.478 0.00 0.00 0.00 2.75
3247 3467 3.371034 TGGAGAATGATAACGTGGGAGA 58.629 45.455 0.00 0.00 0.00 3.71
3248 3468 3.819564 TGGAGAATGATAACGTGGGAG 57.180 47.619 0.00 0.00 0.00 4.30
3249 3469 3.181455 CCATGGAGAATGATAACGTGGGA 60.181 47.826 5.56 0.00 38.72 4.37
3250 3470 3.141398 CCATGGAGAATGATAACGTGGG 58.859 50.000 5.56 0.00 38.72 4.61
3251 3471 4.060900 CTCCATGGAGAATGATAACGTGG 58.939 47.826 34.54 4.65 44.53 4.94
3252 3472 3.496130 GCTCCATGGAGAATGATAACGTG 59.504 47.826 40.29 14.44 44.53 4.49
3253 3473 3.733337 GCTCCATGGAGAATGATAACGT 58.267 45.455 40.29 0.00 44.53 3.99
3254 3474 2.733552 CGCTCCATGGAGAATGATAACG 59.266 50.000 40.29 27.33 44.53 3.18
3255 3475 3.070018 CCGCTCCATGGAGAATGATAAC 58.930 50.000 40.29 20.96 44.53 1.89
3256 3476 2.972021 TCCGCTCCATGGAGAATGATAA 59.028 45.455 40.29 17.23 44.53 1.75
3257 3477 2.300152 GTCCGCTCCATGGAGAATGATA 59.700 50.000 40.29 18.22 44.53 2.15
3258 3478 1.071385 GTCCGCTCCATGGAGAATGAT 59.929 52.381 40.29 0.00 44.53 2.45
3259 3479 0.465705 GTCCGCTCCATGGAGAATGA 59.534 55.000 40.29 28.47 44.53 2.57
3260 3480 0.877649 CGTCCGCTCCATGGAGAATG 60.878 60.000 40.29 27.85 44.53 2.67
3261 3481 1.443407 CGTCCGCTCCATGGAGAAT 59.557 57.895 40.29 0.00 44.53 2.40
3262 3482 2.721167 CCGTCCGCTCCATGGAGAA 61.721 63.158 40.29 23.51 44.53 2.87
3263 3483 3.147595 CCGTCCGCTCCATGGAGA 61.148 66.667 40.29 20.82 44.53 3.71
3264 3484 4.899239 GCCGTCCGCTCCATGGAG 62.899 72.222 33.73 33.73 44.56 3.86
3267 3487 4.899239 GAGGCCGTCCGCTCCATG 62.899 72.222 0.00 0.00 37.74 3.66
3271 3491 2.615262 CTAACTGAGGCCGTCCGCTC 62.615 65.000 0.00 0.00 37.74 5.03
3272 3492 2.678934 TAACTGAGGCCGTCCGCT 60.679 61.111 0.00 0.00 37.74 5.52
3273 3493 2.202756 CTAACTGAGGCCGTCCGC 60.203 66.667 0.00 0.00 37.47 5.54
3274 3494 2.202756 GCTAACTGAGGCCGTCCG 60.203 66.667 0.00 0.00 37.47 4.79
3275 3495 0.530870 GATGCTAACTGAGGCCGTCC 60.531 60.000 0.00 0.00 0.00 4.79
3276 3496 0.175760 TGATGCTAACTGAGGCCGTC 59.824 55.000 0.00 0.00 0.00 4.79
3277 3497 0.833287 ATGATGCTAACTGAGGCCGT 59.167 50.000 0.00 0.00 0.00 5.68
3278 3498 1.224075 CATGATGCTAACTGAGGCCG 58.776 55.000 0.00 0.00 0.00 6.13
3279 3499 1.602311 CCATGATGCTAACTGAGGCC 58.398 55.000 0.00 0.00 0.00 5.19
3280 3500 0.950116 GCCATGATGCTAACTGAGGC 59.050 55.000 0.00 0.00 0.00 4.70
3281 3501 2.492012 GAGCCATGATGCTAACTGAGG 58.508 52.381 0.00 0.00 42.95 3.86
3282 3502 2.104451 AGGAGCCATGATGCTAACTGAG 59.896 50.000 0.00 0.00 42.95 3.35
3283 3503 2.103771 GAGGAGCCATGATGCTAACTGA 59.896 50.000 0.00 0.00 42.95 3.41
3284 3504 2.492012 GAGGAGCCATGATGCTAACTG 58.508 52.381 0.00 0.00 42.95 3.16
3285 3505 1.419387 GGAGGAGCCATGATGCTAACT 59.581 52.381 0.00 0.00 42.95 2.24
3286 3506 1.141657 TGGAGGAGCCATGATGCTAAC 59.858 52.381 0.00 0.00 43.33 2.34
3287 3507 1.510492 TGGAGGAGCCATGATGCTAA 58.490 50.000 0.00 0.00 43.33 3.09
3288 3508 3.245732 TGGAGGAGCCATGATGCTA 57.754 52.632 0.00 0.00 43.33 3.49
3289 3509 4.078167 TGGAGGAGCCATGATGCT 57.922 55.556 0.00 0.00 43.33 3.79
3296 3516 2.805313 ATCGACTGGTGGAGGAGCCA 62.805 60.000 0.00 0.00 46.96 4.75
3297 3517 2.022240 GATCGACTGGTGGAGGAGCC 62.022 65.000 0.00 0.00 37.10 4.70
3298 3518 1.323271 TGATCGACTGGTGGAGGAGC 61.323 60.000 0.00 0.00 0.00 4.70
3299 3519 0.457851 GTGATCGACTGGTGGAGGAG 59.542 60.000 0.00 0.00 0.00 3.69
3300 3520 0.039764 AGTGATCGACTGGTGGAGGA 59.960 55.000 0.00 0.00 31.75 3.71
3301 3521 2.584673 AGTGATCGACTGGTGGAGG 58.415 57.895 0.00 0.00 31.75 4.30
3309 3529 0.392706 TGGCACAACAGTGATCGACT 59.607 50.000 0.00 0.00 35.24 4.18
3310 3530 2.912986 TGGCACAACAGTGATCGAC 58.087 52.632 0.00 0.00 35.24 4.20
3355 3575 9.857656 AGCTAGGTTGTATACAAGTACAGTATA 57.142 33.333 18.56 11.83 36.08 1.47
3356 3576 8.763984 AGCTAGGTTGTATACAAGTACAGTAT 57.236 34.615 18.56 13.38 36.08 2.12
3357 3577 9.113838 GTAGCTAGGTTGTATACAAGTACAGTA 57.886 37.037 18.56 4.84 36.08 2.74
3358 3578 7.067981 GGTAGCTAGGTTGTATACAAGTACAGT 59.932 40.741 18.56 5.74 36.08 3.55
3359 3579 7.424001 GGTAGCTAGGTTGTATACAAGTACAG 58.576 42.308 18.56 13.44 36.08 2.74
3360 3580 6.322201 GGGTAGCTAGGTTGTATACAAGTACA 59.678 42.308 18.56 4.12 36.39 2.90
3361 3581 6.322201 TGGGTAGCTAGGTTGTATACAAGTAC 59.678 42.308 18.56 11.74 36.39 2.73
3362 3582 6.322201 GTGGGTAGCTAGGTTGTATACAAGTA 59.678 42.308 18.56 11.90 36.39 2.24
3363 3583 5.128335 GTGGGTAGCTAGGTTGTATACAAGT 59.872 44.000 18.56 11.40 36.39 3.16
3364 3584 5.128171 TGTGGGTAGCTAGGTTGTATACAAG 59.872 44.000 18.56 8.14 36.39 3.16
3365 3585 5.024785 TGTGGGTAGCTAGGTTGTATACAA 58.975 41.667 14.35 14.35 0.00 2.41
3366 3586 4.612401 TGTGGGTAGCTAGGTTGTATACA 58.388 43.478 0.08 0.08 0.00 2.29
3367 3587 5.803237 ATGTGGGTAGCTAGGTTGTATAC 57.197 43.478 0.00 0.00 0.00 1.47
3368 3588 8.500667 AATAATGTGGGTAGCTAGGTTGTATA 57.499 34.615 0.00 0.00 0.00 1.47
3369 3589 7.388638 AATAATGTGGGTAGCTAGGTTGTAT 57.611 36.000 0.00 0.00 0.00 2.29
3370 3590 6.818281 AATAATGTGGGTAGCTAGGTTGTA 57.182 37.500 0.00 0.00 0.00 2.41
3371 3591 5.710409 AATAATGTGGGTAGCTAGGTTGT 57.290 39.130 0.00 0.00 0.00 3.32
3372 3592 5.885912 ACAAATAATGTGGGTAGCTAGGTTG 59.114 40.000 0.00 0.00 41.93 3.77
3373 3593 6.074698 ACAAATAATGTGGGTAGCTAGGTT 57.925 37.500 0.00 0.00 41.93 3.50
3374 3594 5.710409 ACAAATAATGTGGGTAGCTAGGT 57.290 39.130 0.00 0.00 41.93 3.08
3375 3595 7.773690 AGTAAACAAATAATGTGGGTAGCTAGG 59.226 37.037 0.00 0.00 42.99 3.02
3376 3596 8.732746 AGTAAACAAATAATGTGGGTAGCTAG 57.267 34.615 0.00 0.00 42.99 3.42
3378 3598 9.120538 CATAGTAAACAAATAATGTGGGTAGCT 57.879 33.333 0.00 0.00 42.99 3.32
3379 3599 7.860872 GCATAGTAAACAAATAATGTGGGTAGC 59.139 37.037 0.00 0.00 42.99 3.58
3380 3600 8.898761 TGCATAGTAAACAAATAATGTGGGTAG 58.101 33.333 0.00 0.00 42.99 3.18
3381 3601 8.809468 TGCATAGTAAACAAATAATGTGGGTA 57.191 30.769 0.00 0.00 42.99 3.69
3382 3602 7.710676 TGCATAGTAAACAAATAATGTGGGT 57.289 32.000 0.00 0.00 42.99 4.51
3383 3603 8.465999 TCTTGCATAGTAAACAAATAATGTGGG 58.534 33.333 0.00 0.00 42.99 4.61
3392 3612 8.892723 CCACATCTATCTTGCATAGTAAACAAA 58.107 33.333 0.00 0.00 0.00 2.83
3393 3613 8.046708 ACCACATCTATCTTGCATAGTAAACAA 58.953 33.333 0.00 0.00 0.00 2.83
3394 3614 7.564793 ACCACATCTATCTTGCATAGTAAACA 58.435 34.615 0.00 0.00 0.00 2.83
3395 3615 8.979574 GTACCACATCTATCTTGCATAGTAAAC 58.020 37.037 0.00 0.00 0.00 2.01
3396 3616 8.148351 GGTACCACATCTATCTTGCATAGTAAA 58.852 37.037 7.15 0.00 0.00 2.01
3397 3617 7.289084 TGGTACCACATCTATCTTGCATAGTAA 59.711 37.037 11.60 0.00 0.00 2.24
3398 3618 6.780522 TGGTACCACATCTATCTTGCATAGTA 59.219 38.462 11.60 0.00 0.00 1.82
3399 3619 5.602561 TGGTACCACATCTATCTTGCATAGT 59.397 40.000 11.60 0.00 0.00 2.12
3400 3620 6.101650 TGGTACCACATCTATCTTGCATAG 57.898 41.667 11.60 0.00 0.00 2.23
3401 3621 5.602561 ACTGGTACCACATCTATCTTGCATA 59.397 40.000 11.60 0.00 0.00 3.14
3402 3622 4.410228 ACTGGTACCACATCTATCTTGCAT 59.590 41.667 11.60 0.00 0.00 3.96
3403 3623 3.774766 ACTGGTACCACATCTATCTTGCA 59.225 43.478 11.60 0.00 0.00 4.08
3404 3624 4.408182 ACTGGTACCACATCTATCTTGC 57.592 45.455 11.60 0.00 0.00 4.01
3405 3625 7.348080 TCTTACTGGTACCACATCTATCTTG 57.652 40.000 11.60 0.00 0.00 3.02
3406 3626 7.620094 AGTTCTTACTGGTACCACATCTATCTT 59.380 37.037 11.60 0.00 31.99 2.40
3407 3627 7.126733 AGTTCTTACTGGTACCACATCTATCT 58.873 38.462 11.60 2.66 31.99 1.98
3408 3628 7.068348 TGAGTTCTTACTGGTACCACATCTATC 59.932 40.741 11.60 3.62 33.84 2.08
3409 3629 6.895756 TGAGTTCTTACTGGTACCACATCTAT 59.104 38.462 11.60 0.00 33.84 1.98
3410 3630 6.250711 TGAGTTCTTACTGGTACCACATCTA 58.749 40.000 11.60 0.00 33.84 1.98
3411 3631 5.084519 TGAGTTCTTACTGGTACCACATCT 58.915 41.667 11.60 2.81 33.84 2.90
3412 3632 5.401531 TGAGTTCTTACTGGTACCACATC 57.598 43.478 11.60 1.19 33.84 3.06
3413 3633 5.248477 ACATGAGTTCTTACTGGTACCACAT 59.752 40.000 11.60 6.76 33.84 3.21
3414 3634 4.591498 ACATGAGTTCTTACTGGTACCACA 59.409 41.667 11.60 4.37 33.84 4.17
3415 3635 5.148651 ACATGAGTTCTTACTGGTACCAC 57.851 43.478 11.60 0.00 33.84 4.16
3416 3636 5.547465 CAACATGAGTTCTTACTGGTACCA 58.453 41.667 15.39 15.39 35.28 3.25
3417 3637 4.392138 GCAACATGAGTTCTTACTGGTACC 59.608 45.833 4.43 4.43 35.28 3.34
3418 3638 5.238583 AGCAACATGAGTTCTTACTGGTAC 58.761 41.667 0.00 0.00 35.28 3.34
3419 3639 5.483685 AGCAACATGAGTTCTTACTGGTA 57.516 39.130 0.00 0.00 35.28 3.25
3420 3640 4.357918 AGCAACATGAGTTCTTACTGGT 57.642 40.909 0.00 0.00 35.28 4.00
3421 3641 5.695851 AAAGCAACATGAGTTCTTACTGG 57.304 39.130 0.00 0.00 35.28 4.00
3422 3642 7.658179 TCTAAAGCAACATGAGTTCTTACTG 57.342 36.000 0.00 0.00 35.28 2.74
3423 3643 9.372369 GTATCTAAAGCAACATGAGTTCTTACT 57.628 33.333 0.00 0.00 35.28 2.24
3424 3644 9.151471 TGTATCTAAAGCAACATGAGTTCTTAC 57.849 33.333 0.00 0.00 35.28 2.34
3425 3645 9.371136 CTGTATCTAAAGCAACATGAGTTCTTA 57.629 33.333 0.00 0.00 35.28 2.10
3426 3646 8.097038 TCTGTATCTAAAGCAACATGAGTTCTT 58.903 33.333 0.00 0.00 35.28 2.52
3427 3647 7.615403 TCTGTATCTAAAGCAACATGAGTTCT 58.385 34.615 0.00 0.00 35.28 3.01
3428 3648 7.547370 ACTCTGTATCTAAAGCAACATGAGTTC 59.453 37.037 0.00 0.00 35.28 3.01
3429 3649 7.390027 ACTCTGTATCTAAAGCAACATGAGTT 58.610 34.615 0.00 0.00 38.88 3.01
3430 3650 6.940739 ACTCTGTATCTAAAGCAACATGAGT 58.059 36.000 0.00 0.00 31.51 3.41
3463 3683 9.516314 CGAGTACTGTATATGAAAATTCAGTCA 57.484 33.333 0.00 0.00 41.08 3.41
3464 3684 8.969267 CCGAGTACTGTATATGAAAATTCAGTC 58.031 37.037 0.00 0.00 41.08 3.51
3465 3685 8.475639 ACCGAGTACTGTATATGAAAATTCAGT 58.524 33.333 0.00 0.00 41.08 3.41
3466 3686 8.873215 ACCGAGTACTGTATATGAAAATTCAG 57.127 34.615 0.00 0.00 41.08 3.02
3467 3687 8.692710 AGACCGAGTACTGTATATGAAAATTCA 58.307 33.333 0.00 0.00 42.14 2.57
3468 3688 9.530633 AAGACCGAGTACTGTATATGAAAATTC 57.469 33.333 0.00 0.00 0.00 2.17


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.