Multiple sequence alignment - TraesCS2A01G202500

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS2A01G202500 chr2A 100.000 2618 0 0 1 2618 176886878 176884261 0.000000e+00 4835
1 TraesCS2A01G202500 chr2A 96.848 1935 59 2 551 2484 642253574 642251641 0.000000e+00 3234
2 TraesCS2A01G202500 chr2A 97.222 180 5 0 2439 2618 642251647 642251468 3.270000e-79 305
3 TraesCS2A01G202500 chr4A 97.488 2070 47 3 550 2618 398499302 398497237 0.000000e+00 3530
4 TraesCS2A01G202500 chr4A 97.056 1936 52 5 551 2484 329170870 329172802 0.000000e+00 3254
5 TraesCS2A01G202500 chr4A 92.453 848 45 7 551 1395 615184987 615184156 0.000000e+00 1194
6 TraesCS2A01G202500 chr4A 97.802 182 4 0 2437 2618 329172794 329172975 5.440000e-82 315
7 TraesCS2A01G202500 chr1B 90.114 2114 105 39 550 2602 549889858 549887788 0.000000e+00 2651
8 TraesCS2A01G202500 chr6D 94.935 691 28 4 549 1236 438886554 438885868 0.000000e+00 1075
9 TraesCS2A01G202500 chr3A 88.471 824 49 10 1817 2618 581852732 581853531 0.000000e+00 953
10 TraesCS2A01G202500 chr3A 76.682 1115 190 48 550 1618 194791116 194792206 2.940000e-154 555
11 TraesCS2A01G202500 chr3A 89.324 281 13 3 542 821 581852438 581852702 1.160000e-88 337
12 TraesCS2A01G202500 chr3A 80.124 161 29 3 2446 2603 194792934 194793094 1.650000e-22 117
13 TraesCS2A01G202500 chr2D 92.929 495 23 5 1 490 172998259 172998746 0.000000e+00 710
14 TraesCS2A01G202500 chr2D 80.838 167 29 3 2437 2603 5091513 5091676 7.610000e-26 128
15 TraesCS2A01G202500 chr2B 89.905 525 20 12 2 510 225256702 225256195 0.000000e+00 645
16 TraesCS2A01G202500 chr2B 79.027 329 44 22 547 864 485327585 485327271 4.420000e-48 202
17 TraesCS2A01G202500 chr7B 76.855 795 138 33 998 1769 198147970 198147199 8.720000e-110 407
18 TraesCS2A01G202500 chr1D 83.803 142 20 3 2462 2603 298453765 298453627 5.880000e-27 132
19 TraesCS2A01G202500 chr3B 79.641 167 31 3 2437 2603 1161365 1161528 1.650000e-22 117


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS2A01G202500 chr2A 176884261 176886878 2617 True 4835.0 4835 100.0000 1 2618 1 chr2A.!!$R1 2617
1 TraesCS2A01G202500 chr2A 642251468 642253574 2106 True 1769.5 3234 97.0350 551 2618 2 chr2A.!!$R2 2067
2 TraesCS2A01G202500 chr4A 398497237 398499302 2065 True 3530.0 3530 97.4880 550 2618 1 chr4A.!!$R1 2068
3 TraesCS2A01G202500 chr4A 329170870 329172975 2105 False 1784.5 3254 97.4290 551 2618 2 chr4A.!!$F1 2067
4 TraesCS2A01G202500 chr4A 615184156 615184987 831 True 1194.0 1194 92.4530 551 1395 1 chr4A.!!$R2 844
5 TraesCS2A01G202500 chr1B 549887788 549889858 2070 True 2651.0 2651 90.1140 550 2602 1 chr1B.!!$R1 2052
6 TraesCS2A01G202500 chr6D 438885868 438886554 686 True 1075.0 1075 94.9350 549 1236 1 chr6D.!!$R1 687
7 TraesCS2A01G202500 chr3A 581852438 581853531 1093 False 645.0 953 88.8975 542 2618 2 chr3A.!!$F2 2076
8 TraesCS2A01G202500 chr3A 194791116 194793094 1978 False 336.0 555 78.4030 550 2603 2 chr3A.!!$F1 2053
9 TraesCS2A01G202500 chr2B 225256195 225256702 507 True 645.0 645 89.9050 2 510 1 chr2B.!!$R1 508
10 TraesCS2A01G202500 chr7B 198147199 198147970 771 True 407.0 407 76.8550 998 1769 1 chr7B.!!$R1 771

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
410 412 0.030638 CCTTTTGCACAGGGTCGTTG 59.969 55.0 3.42 0.0 0.0 4.1 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2318 2683 2.942796 AAGCGGCCATCGACAGACA 61.943 57.895 2.24 0.0 42.43 3.41 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
25 26 3.703127 ACCGCGGAGAAAGGGGAC 61.703 66.667 35.90 0.00 43.49 4.46
32 33 2.941583 AGAAAGGGGACTGGGGGC 60.942 66.667 0.00 0.00 42.68 5.80
124 126 4.421515 CAGCTGGGGCAGGGAGTG 62.422 72.222 5.57 0.00 41.70 3.51
125 127 4.664267 AGCTGGGGCAGGGAGTGA 62.664 66.667 0.00 0.00 41.70 3.41
126 128 4.106925 GCTGGGGCAGGGAGTGAG 62.107 72.222 0.00 0.00 38.54 3.51
127 129 2.608988 CTGGGGCAGGGAGTGAGT 60.609 66.667 0.00 0.00 0.00 3.41
128 130 2.930019 TGGGGCAGGGAGTGAGTG 60.930 66.667 0.00 0.00 0.00 3.51
129 131 2.607750 GGGGCAGGGAGTGAGTGA 60.608 66.667 0.00 0.00 0.00 3.41
130 132 2.664081 GGGGCAGGGAGTGAGTGAG 61.664 68.421 0.00 0.00 0.00 3.51
131 133 2.664081 GGGCAGGGAGTGAGTGAGG 61.664 68.421 0.00 0.00 0.00 3.86
132 134 2.664081 GGCAGGGAGTGAGTGAGGG 61.664 68.421 0.00 0.00 0.00 4.30
133 135 1.610673 GCAGGGAGTGAGTGAGGGA 60.611 63.158 0.00 0.00 0.00 4.20
134 136 1.612395 GCAGGGAGTGAGTGAGGGAG 61.612 65.000 0.00 0.00 0.00 4.30
135 137 0.975040 CAGGGAGTGAGTGAGGGAGG 60.975 65.000 0.00 0.00 0.00 4.30
136 138 1.149782 AGGGAGTGAGTGAGGGAGGA 61.150 60.000 0.00 0.00 0.00 3.71
137 139 0.252284 GGGAGTGAGTGAGGGAGGAA 60.252 60.000 0.00 0.00 0.00 3.36
138 140 1.623834 GGGAGTGAGTGAGGGAGGAAT 60.624 57.143 0.00 0.00 0.00 3.01
139 141 1.484240 GGAGTGAGTGAGGGAGGAATG 59.516 57.143 0.00 0.00 0.00 2.67
140 142 2.461695 GAGTGAGTGAGGGAGGAATGA 58.538 52.381 0.00 0.00 0.00 2.57
141 143 2.430332 GAGTGAGTGAGGGAGGAATGAG 59.570 54.545 0.00 0.00 0.00 2.90
142 144 1.134551 GTGAGTGAGGGAGGAATGAGC 60.135 57.143 0.00 0.00 0.00 4.26
143 145 1.198713 GAGTGAGGGAGGAATGAGCA 58.801 55.000 0.00 0.00 0.00 4.26
144 146 1.556911 GAGTGAGGGAGGAATGAGCAA 59.443 52.381 0.00 0.00 0.00 3.91
145 147 1.558756 AGTGAGGGAGGAATGAGCAAG 59.441 52.381 0.00 0.00 0.00 4.01
146 148 1.556911 GTGAGGGAGGAATGAGCAAGA 59.443 52.381 0.00 0.00 0.00 3.02
147 149 1.836166 TGAGGGAGGAATGAGCAAGAG 59.164 52.381 0.00 0.00 0.00 2.85
148 150 1.140652 GAGGGAGGAATGAGCAAGAGG 59.859 57.143 0.00 0.00 0.00 3.69
149 151 1.207791 GGGAGGAATGAGCAAGAGGA 58.792 55.000 0.00 0.00 0.00 3.71
150 152 1.134250 GGGAGGAATGAGCAAGAGGAC 60.134 57.143 0.00 0.00 0.00 3.85
151 153 1.556911 GGAGGAATGAGCAAGAGGACA 59.443 52.381 0.00 0.00 0.00 4.02
152 154 2.026822 GGAGGAATGAGCAAGAGGACAA 60.027 50.000 0.00 0.00 0.00 3.18
153 155 3.269178 GAGGAATGAGCAAGAGGACAAG 58.731 50.000 0.00 0.00 0.00 3.16
154 156 2.909006 AGGAATGAGCAAGAGGACAAGA 59.091 45.455 0.00 0.00 0.00 3.02
155 157 3.055240 AGGAATGAGCAAGAGGACAAGAG 60.055 47.826 0.00 0.00 0.00 2.85
156 158 3.269178 GAATGAGCAAGAGGACAAGAGG 58.731 50.000 0.00 0.00 0.00 3.69
157 159 0.322975 TGAGCAAGAGGACAAGAGGC 59.677 55.000 0.00 0.00 0.00 4.70
158 160 0.739112 GAGCAAGAGGACAAGAGGCG 60.739 60.000 0.00 0.00 0.00 5.52
159 161 2.394563 GCAAGAGGACAAGAGGCGC 61.395 63.158 0.00 0.00 0.00 6.53
160 162 1.004560 CAAGAGGACAAGAGGCGCA 60.005 57.895 10.83 0.00 0.00 6.09
161 163 1.018226 CAAGAGGACAAGAGGCGCAG 61.018 60.000 10.83 0.00 0.00 5.18
179 181 2.050714 CGCAGCAAAGCAGTGTGG 60.051 61.111 0.00 0.00 0.00 4.17
180 182 2.837883 CGCAGCAAAGCAGTGTGGT 61.838 57.895 0.00 0.00 0.00 4.16
181 183 1.438814 GCAGCAAAGCAGTGTGGTT 59.561 52.632 0.00 0.00 40.14 3.67
183 185 1.066908 GCAGCAAAGCAGTGTGGTTTA 59.933 47.619 3.92 0.00 45.08 2.01
184 186 2.288395 GCAGCAAAGCAGTGTGGTTTAT 60.288 45.455 3.92 0.00 45.08 1.40
185 187 3.799917 GCAGCAAAGCAGTGTGGTTTATT 60.800 43.478 3.92 0.00 45.08 1.40
186 188 4.370917 CAGCAAAGCAGTGTGGTTTATTT 58.629 39.130 3.92 0.00 45.08 1.40
187 189 4.209703 CAGCAAAGCAGTGTGGTTTATTTG 59.790 41.667 3.92 0.00 45.08 2.32
188 190 4.099266 AGCAAAGCAGTGTGGTTTATTTGA 59.901 37.500 3.92 0.00 45.08 2.69
189 191 4.808364 GCAAAGCAGTGTGGTTTATTTGAA 59.192 37.500 3.92 0.00 45.08 2.69
190 192 5.276820 GCAAAGCAGTGTGGTTTATTTGAAC 60.277 40.000 3.92 0.00 45.08 3.18
191 193 5.234116 CAAAGCAGTGTGGTTTATTTGAACC 59.766 40.000 3.92 0.00 45.08 3.62
192 194 5.128663 AAAGCAGTGTGGTTTATTTGAACCT 59.871 36.000 8.13 0.00 45.03 3.50
193 195 6.322712 AAAGCAGTGTGGTTTATTTGAACCTA 59.677 34.615 8.13 0.00 45.03 3.08
194 196 7.015195 AAAGCAGTGTGGTTTATTTGAACCTAT 59.985 33.333 8.13 0.00 45.03 2.57
201 203 6.089920 GGTTTATTTGAACCTATTTTGCGC 57.910 37.500 0.00 0.00 44.55 6.09
202 204 5.867174 GGTTTATTTGAACCTATTTTGCGCT 59.133 36.000 9.73 0.00 44.55 5.92
203 205 6.183360 GGTTTATTTGAACCTATTTTGCGCTG 60.183 38.462 9.73 0.00 44.55 5.18
204 206 2.346099 TTGAACCTATTTTGCGCTGC 57.654 45.000 9.73 0.00 0.00 5.25
205 207 0.525761 TGAACCTATTTTGCGCTGCC 59.474 50.000 9.73 0.00 0.00 4.85
206 208 0.525761 GAACCTATTTTGCGCTGCCA 59.474 50.000 9.73 0.00 0.00 4.92
207 209 0.527565 AACCTATTTTGCGCTGCCAG 59.472 50.000 9.73 0.00 0.00 4.85
208 210 1.226773 CCTATTTTGCGCTGCCAGC 60.227 57.895 9.73 6.63 38.02 4.85
209 211 1.226773 CTATTTTGCGCTGCCAGCC 60.227 57.895 11.83 4.63 38.18 4.85
210 212 2.924922 CTATTTTGCGCTGCCAGCCG 62.925 60.000 11.83 7.63 38.18 5.52
221 223 4.373116 CCAGCCGTGCCGTACAGT 62.373 66.667 0.00 0.00 0.00 3.55
222 224 3.112075 CAGCCGTGCCGTACAGTG 61.112 66.667 0.00 0.00 0.00 3.66
223 225 4.373116 AGCCGTGCCGTACAGTGG 62.373 66.667 0.00 0.00 0.00 4.00
230 232 2.742372 CCGTACAGTGGGCAGCAC 60.742 66.667 0.00 0.00 0.00 4.40
231 233 2.343758 CGTACAGTGGGCAGCACT 59.656 61.111 0.00 0.00 0.00 4.40
235 237 3.957586 CAGTGGGCAGCACTGGGA 61.958 66.667 14.01 0.00 44.46 4.37
236 238 3.177884 AGTGGGCAGCACTGGGAA 61.178 61.111 0.00 0.00 0.00 3.97
237 239 2.036256 GTGGGCAGCACTGGGAAT 59.964 61.111 0.00 0.00 0.00 3.01
238 240 2.036098 TGGGCAGCACTGGGAATG 59.964 61.111 0.00 0.00 0.00 2.67
239 241 2.356278 GGGCAGCACTGGGAATGA 59.644 61.111 0.00 0.00 0.00 2.57
240 242 1.751927 GGGCAGCACTGGGAATGAG 60.752 63.158 0.00 0.00 0.00 2.90
241 243 2.413142 GGCAGCACTGGGAATGAGC 61.413 63.158 0.00 0.00 0.00 4.26
242 244 1.676635 GCAGCACTGGGAATGAGCA 60.677 57.895 0.00 0.00 0.00 4.26
243 245 1.654954 GCAGCACTGGGAATGAGCAG 61.655 60.000 0.00 0.00 0.00 4.24
244 246 0.322277 CAGCACTGGGAATGAGCAGT 60.322 55.000 0.00 0.00 0.00 4.40
245 247 0.322277 AGCACTGGGAATGAGCAGTG 60.322 55.000 0.00 0.00 45.46 3.66
246 248 0.321919 GCACTGGGAATGAGCAGTGA 60.322 55.000 5.72 0.00 45.52 3.41
247 249 1.681166 GCACTGGGAATGAGCAGTGAT 60.681 52.381 5.72 0.00 45.52 3.06
248 250 2.014857 CACTGGGAATGAGCAGTGATG 58.985 52.381 0.00 0.00 45.52 3.07
249 251 1.064906 ACTGGGAATGAGCAGTGATGG 60.065 52.381 0.00 0.00 0.00 3.51
250 252 0.394762 TGGGAATGAGCAGTGATGGC 60.395 55.000 0.00 0.00 0.00 4.40
251 253 1.442526 GGGAATGAGCAGTGATGGCG 61.443 60.000 0.00 0.00 36.08 5.69
252 254 0.462581 GGAATGAGCAGTGATGGCGA 60.463 55.000 0.00 0.00 36.08 5.54
253 255 1.590932 GAATGAGCAGTGATGGCGAT 58.409 50.000 0.00 0.00 36.08 4.58
254 256 1.263484 GAATGAGCAGTGATGGCGATG 59.737 52.381 0.00 0.00 36.08 3.84
255 257 0.534427 ATGAGCAGTGATGGCGATGG 60.534 55.000 0.00 0.00 36.08 3.51
256 258 1.153289 GAGCAGTGATGGCGATGGT 60.153 57.895 0.00 0.00 36.08 3.55
257 259 1.434622 GAGCAGTGATGGCGATGGTG 61.435 60.000 0.00 0.00 36.08 4.17
258 260 1.450134 GCAGTGATGGCGATGGTGA 60.450 57.895 0.00 0.00 0.00 4.02
259 261 1.709147 GCAGTGATGGCGATGGTGAC 61.709 60.000 0.00 0.00 0.00 3.67
260 262 1.153568 AGTGATGGCGATGGTGACG 60.154 57.895 0.00 0.00 0.00 4.35
267 269 3.966215 CGATGGTGACGCTGGTTT 58.034 55.556 0.00 0.00 0.00 3.27
268 270 3.131326 CGATGGTGACGCTGGTTTA 57.869 52.632 0.00 0.00 0.00 2.01
269 271 0.999406 CGATGGTGACGCTGGTTTAG 59.001 55.000 0.00 0.00 0.00 1.85
270 272 1.403647 CGATGGTGACGCTGGTTTAGA 60.404 52.381 0.00 0.00 0.00 2.10
271 273 2.695359 GATGGTGACGCTGGTTTAGAA 58.305 47.619 0.00 0.00 0.00 2.10
272 274 2.623878 TGGTGACGCTGGTTTAGAAA 57.376 45.000 0.00 0.00 0.00 2.52
273 275 2.920524 TGGTGACGCTGGTTTAGAAAA 58.079 42.857 0.00 0.00 0.00 2.29
274 276 3.280295 TGGTGACGCTGGTTTAGAAAAA 58.720 40.909 0.00 0.00 0.00 1.94
275 277 3.886505 TGGTGACGCTGGTTTAGAAAAAT 59.113 39.130 0.00 0.00 0.00 1.82
276 278 5.064558 TGGTGACGCTGGTTTAGAAAAATA 58.935 37.500 0.00 0.00 0.00 1.40
277 279 5.708230 TGGTGACGCTGGTTTAGAAAAATAT 59.292 36.000 0.00 0.00 0.00 1.28
278 280 6.879993 TGGTGACGCTGGTTTAGAAAAATATA 59.120 34.615 0.00 0.00 0.00 0.86
279 281 7.065324 TGGTGACGCTGGTTTAGAAAAATATAG 59.935 37.037 0.00 0.00 0.00 1.31
280 282 7.279313 GGTGACGCTGGTTTAGAAAAATATAGA 59.721 37.037 0.00 0.00 0.00 1.98
281 283 8.827677 GTGACGCTGGTTTAGAAAAATATAGAT 58.172 33.333 0.00 0.00 0.00 1.98
282 284 8.826710 TGACGCTGGTTTAGAAAAATATAGATG 58.173 33.333 0.00 0.00 0.00 2.90
283 285 7.639945 ACGCTGGTTTAGAAAAATATAGATGC 58.360 34.615 0.00 0.00 0.00 3.91
284 286 7.499232 ACGCTGGTTTAGAAAAATATAGATGCT 59.501 33.333 0.00 0.00 0.00 3.79
285 287 8.345565 CGCTGGTTTAGAAAAATATAGATGCTT 58.654 33.333 0.00 0.00 0.00 3.91
294 296 9.205513 AGAAAAATATAGATGCTTTGATTGGGT 57.794 29.630 0.00 0.00 0.00 4.51
295 297 9.252962 GAAAAATATAGATGCTTTGATTGGGTG 57.747 33.333 0.00 0.00 0.00 4.61
296 298 5.972107 ATATAGATGCTTTGATTGGGTGC 57.028 39.130 0.00 0.00 0.00 5.01
297 299 2.226962 AGATGCTTTGATTGGGTGCT 57.773 45.000 0.00 0.00 0.00 4.40
298 300 3.370840 AGATGCTTTGATTGGGTGCTA 57.629 42.857 0.00 0.00 0.00 3.49
299 301 3.700538 AGATGCTTTGATTGGGTGCTAA 58.299 40.909 0.00 0.00 0.00 3.09
300 302 4.284178 AGATGCTTTGATTGGGTGCTAAT 58.716 39.130 0.00 0.00 0.00 1.73
301 303 3.872511 TGCTTTGATTGGGTGCTAATG 57.127 42.857 0.00 0.00 0.00 1.90
302 304 3.429492 TGCTTTGATTGGGTGCTAATGA 58.571 40.909 0.00 0.00 0.00 2.57
303 305 3.831333 TGCTTTGATTGGGTGCTAATGAA 59.169 39.130 0.00 0.00 0.00 2.57
304 306 4.282957 TGCTTTGATTGGGTGCTAATGAAA 59.717 37.500 0.00 0.00 0.00 2.69
305 307 5.046448 TGCTTTGATTGGGTGCTAATGAAAT 60.046 36.000 0.00 0.00 0.00 2.17
306 308 5.292589 GCTTTGATTGGGTGCTAATGAAATG 59.707 40.000 0.00 0.00 0.00 2.32
307 309 5.341872 TTGATTGGGTGCTAATGAAATGG 57.658 39.130 0.00 0.00 0.00 3.16
308 310 3.705579 TGATTGGGTGCTAATGAAATGGG 59.294 43.478 0.00 0.00 0.00 4.00
309 311 2.157640 TGGGTGCTAATGAAATGGGG 57.842 50.000 0.00 0.00 0.00 4.96
310 312 1.643286 TGGGTGCTAATGAAATGGGGA 59.357 47.619 0.00 0.00 0.00 4.81
311 313 2.310538 GGGTGCTAATGAAATGGGGAG 58.689 52.381 0.00 0.00 0.00 4.30
312 314 2.310538 GGTGCTAATGAAATGGGGAGG 58.689 52.381 0.00 0.00 0.00 4.30
313 315 2.091885 GGTGCTAATGAAATGGGGAGGA 60.092 50.000 0.00 0.00 0.00 3.71
314 316 3.627237 GGTGCTAATGAAATGGGGAGGAA 60.627 47.826 0.00 0.00 0.00 3.36
315 317 4.218312 GTGCTAATGAAATGGGGAGGAAT 58.782 43.478 0.00 0.00 0.00 3.01
316 318 4.038402 GTGCTAATGAAATGGGGAGGAATG 59.962 45.833 0.00 0.00 0.00 2.67
317 319 3.575687 GCTAATGAAATGGGGAGGAATGG 59.424 47.826 0.00 0.00 0.00 3.16
318 320 2.092598 ATGAAATGGGGAGGAATGGC 57.907 50.000 0.00 0.00 0.00 4.40
319 321 1.009997 TGAAATGGGGAGGAATGGCT 58.990 50.000 0.00 0.00 0.00 4.75
320 322 1.063717 TGAAATGGGGAGGAATGGCTC 60.064 52.381 0.00 0.00 0.00 4.70
321 323 0.106519 AAATGGGGAGGAATGGCTCG 60.107 55.000 0.00 0.00 0.00 5.03
322 324 0.988145 AATGGGGAGGAATGGCTCGA 60.988 55.000 0.00 0.00 0.00 4.04
323 325 1.414061 ATGGGGAGGAATGGCTCGAG 61.414 60.000 8.45 8.45 0.00 4.04
324 326 2.812619 GGGGAGGAATGGCTCGAGG 61.813 68.421 15.58 0.00 0.00 4.63
325 327 2.812619 GGGAGGAATGGCTCGAGGG 61.813 68.421 15.58 0.00 0.00 4.30
326 328 1.762460 GGAGGAATGGCTCGAGGGA 60.762 63.158 15.58 0.00 0.00 4.20
327 329 1.338136 GGAGGAATGGCTCGAGGGAA 61.338 60.000 15.58 0.00 0.00 3.97
328 330 0.179070 GAGGAATGGCTCGAGGGAAC 60.179 60.000 15.58 0.00 0.00 3.62
341 343 3.791640 GGAACCAGGGGCAAAAGG 58.208 61.111 0.00 0.00 0.00 3.11
342 344 1.152333 GGAACCAGGGGCAAAAGGT 60.152 57.895 0.00 0.00 35.47 3.50
343 345 0.113580 GGAACCAGGGGCAAAAGGTA 59.886 55.000 0.00 0.00 33.15 3.08
344 346 1.545841 GAACCAGGGGCAAAAGGTAG 58.454 55.000 0.00 0.00 33.15 3.18
345 347 0.114364 AACCAGGGGCAAAAGGTAGG 59.886 55.000 0.00 0.00 33.15 3.18
346 348 1.000359 CCAGGGGCAAAAGGTAGGG 60.000 63.158 0.00 0.00 0.00 3.53
347 349 1.682344 CAGGGGCAAAAGGTAGGGC 60.682 63.158 0.00 0.00 0.00 5.19
348 350 1.857348 AGGGGCAAAAGGTAGGGCT 60.857 57.895 0.00 0.00 0.00 5.19
349 351 1.682344 GGGGCAAAAGGTAGGGCTG 60.682 63.158 0.00 0.00 0.00 4.85
350 352 1.076727 GGGCAAAAGGTAGGGCTGT 59.923 57.895 0.00 0.00 0.00 4.40
351 353 1.250840 GGGCAAAAGGTAGGGCTGTG 61.251 60.000 0.00 0.00 0.00 3.66
352 354 1.250840 GGCAAAAGGTAGGGCTGTGG 61.251 60.000 0.00 0.00 0.00 4.17
353 355 0.539669 GCAAAAGGTAGGGCTGTGGT 60.540 55.000 0.00 0.00 0.00 4.16
354 356 1.995376 CAAAAGGTAGGGCTGTGGTT 58.005 50.000 0.00 0.00 0.00 3.67
355 357 1.886542 CAAAAGGTAGGGCTGTGGTTC 59.113 52.381 0.00 0.00 0.00 3.62
356 358 0.404426 AAAGGTAGGGCTGTGGTTCC 59.596 55.000 0.00 0.00 0.00 3.62
357 359 0.770557 AAGGTAGGGCTGTGGTTCCA 60.771 55.000 0.00 0.00 0.00 3.53
358 360 0.550147 AGGTAGGGCTGTGGTTCCAT 60.550 55.000 0.00 0.00 0.00 3.41
359 361 0.107165 GGTAGGGCTGTGGTTCCATC 60.107 60.000 0.00 0.00 0.00 3.51
360 362 0.912486 GTAGGGCTGTGGTTCCATCT 59.088 55.000 0.00 0.00 0.00 2.90
361 363 1.282157 GTAGGGCTGTGGTTCCATCTT 59.718 52.381 0.00 0.00 0.00 2.40
362 364 0.779997 AGGGCTGTGGTTCCATCTTT 59.220 50.000 0.00 0.00 0.00 2.52
363 365 1.992557 AGGGCTGTGGTTCCATCTTTA 59.007 47.619 0.00 0.00 0.00 1.85
364 366 2.378547 AGGGCTGTGGTTCCATCTTTAA 59.621 45.455 0.00 0.00 0.00 1.52
365 367 3.011708 AGGGCTGTGGTTCCATCTTTAAT 59.988 43.478 0.00 0.00 0.00 1.40
366 368 3.769300 GGGCTGTGGTTCCATCTTTAATT 59.231 43.478 0.00 0.00 0.00 1.40
367 369 4.953579 GGGCTGTGGTTCCATCTTTAATTA 59.046 41.667 0.00 0.00 0.00 1.40
368 370 5.067805 GGGCTGTGGTTCCATCTTTAATTAG 59.932 44.000 0.00 0.00 0.00 1.73
369 371 5.067805 GGCTGTGGTTCCATCTTTAATTAGG 59.932 44.000 0.00 0.00 0.00 2.69
370 372 5.450550 GCTGTGGTTCCATCTTTAATTAGGC 60.451 44.000 0.00 0.00 0.00 3.93
371 373 5.575157 TGTGGTTCCATCTTTAATTAGGCA 58.425 37.500 0.00 0.00 0.00 4.75
372 374 6.194235 TGTGGTTCCATCTTTAATTAGGCAT 58.806 36.000 0.00 0.00 0.00 4.40
373 375 6.096705 TGTGGTTCCATCTTTAATTAGGCATG 59.903 38.462 0.00 0.00 0.00 4.06
374 376 5.598005 TGGTTCCATCTTTAATTAGGCATGG 59.402 40.000 10.41 10.41 33.38 3.66
375 377 5.509670 GGTTCCATCTTTAATTAGGCATGGC 60.510 44.000 12.14 12.14 32.32 4.40
376 378 4.802307 TCCATCTTTAATTAGGCATGGCA 58.198 39.130 22.64 1.17 32.32 4.92
377 379 5.396485 TCCATCTTTAATTAGGCATGGCAT 58.604 37.500 22.64 9.12 32.32 4.40
378 380 5.244402 TCCATCTTTAATTAGGCATGGCATG 59.756 40.000 22.99 22.99 32.32 4.06
379 381 5.475719 CATCTTTAATTAGGCATGGCATGG 58.524 41.667 27.48 10.64 0.00 3.66
386 388 3.986006 GCATGGCATGGCATCCGG 61.986 66.667 30.20 20.45 0.00 5.14
387 389 2.520020 CATGGCATGGCATCCGGT 60.520 61.111 30.20 9.24 0.00 5.28
388 390 2.520020 ATGGCATGGCATCCGGTG 60.520 61.111 27.75 0.00 0.00 4.94
398 400 1.508088 CATCCGGTGCTCCTTTTGC 59.492 57.895 0.00 0.00 0.00 3.68
399 401 1.074775 ATCCGGTGCTCCTTTTGCA 59.925 52.632 0.00 0.00 38.19 4.08
404 406 4.179361 TGCTCCTTTTGCACAGGG 57.821 55.556 10.67 2.91 35.31 4.45
405 407 1.229927 TGCTCCTTTTGCACAGGGT 59.770 52.632 10.67 0.00 35.31 4.34
406 408 0.823356 TGCTCCTTTTGCACAGGGTC 60.823 55.000 10.67 4.54 35.31 4.46
407 409 1.856265 GCTCCTTTTGCACAGGGTCG 61.856 60.000 10.67 1.01 31.50 4.79
408 410 0.535102 CTCCTTTTGCACAGGGTCGT 60.535 55.000 10.67 0.00 31.50 4.34
409 411 0.106918 TCCTTTTGCACAGGGTCGTT 60.107 50.000 10.67 0.00 31.50 3.85
410 412 0.030638 CCTTTTGCACAGGGTCGTTG 59.969 55.000 3.42 0.00 0.00 4.10
411 413 1.021202 CTTTTGCACAGGGTCGTTGA 58.979 50.000 0.00 0.00 0.00 3.18
412 414 1.608590 CTTTTGCACAGGGTCGTTGAT 59.391 47.619 0.00 0.00 0.00 2.57
413 415 2.552599 TTTGCACAGGGTCGTTGATA 57.447 45.000 0.00 0.00 0.00 2.15
414 416 2.552599 TTGCACAGGGTCGTTGATAA 57.447 45.000 0.00 0.00 0.00 1.75
415 417 1.803334 TGCACAGGGTCGTTGATAAC 58.197 50.000 0.00 0.00 0.00 1.89
431 433 7.479070 GTTGATAACGTAGAAAAATGCTGTG 57.521 36.000 0.00 0.00 0.00 3.66
432 434 5.627172 TGATAACGTAGAAAAATGCTGTGC 58.373 37.500 0.00 0.00 0.00 4.57
433 435 5.411361 TGATAACGTAGAAAAATGCTGTGCT 59.589 36.000 0.00 0.00 0.00 4.40
434 436 3.813529 ACGTAGAAAAATGCTGTGCTC 57.186 42.857 0.00 0.00 0.00 4.26
435 437 3.403038 ACGTAGAAAAATGCTGTGCTCT 58.597 40.909 0.00 0.00 0.00 4.09
436 438 4.566004 ACGTAGAAAAATGCTGTGCTCTA 58.434 39.130 0.00 0.00 0.00 2.43
437 439 4.389077 ACGTAGAAAAATGCTGTGCTCTAC 59.611 41.667 0.00 0.00 32.05 2.59
438 440 4.490959 CGTAGAAAAATGCTGTGCTCTACG 60.491 45.833 17.24 17.24 43.01 3.51
439 441 3.664107 AGAAAAATGCTGTGCTCTACGA 58.336 40.909 0.00 0.00 0.00 3.43
440 442 3.433615 AGAAAAATGCTGTGCTCTACGAC 59.566 43.478 0.00 0.00 0.00 4.34
441 443 2.751166 AAATGCTGTGCTCTACGACT 57.249 45.000 0.00 0.00 0.00 4.18
442 444 3.868757 AAATGCTGTGCTCTACGACTA 57.131 42.857 0.00 0.00 0.00 2.59
443 445 2.853731 ATGCTGTGCTCTACGACTAC 57.146 50.000 0.00 0.00 0.00 2.73
444 446 0.446616 TGCTGTGCTCTACGACTACG 59.553 55.000 0.00 0.00 45.75 3.51
459 461 5.352643 CGACTACGTATGTGTGGATATGA 57.647 43.478 0.00 0.00 34.56 2.15
460 462 5.754778 CGACTACGTATGTGTGGATATGAA 58.245 41.667 0.00 0.00 34.56 2.57
461 463 5.851703 CGACTACGTATGTGTGGATATGAAG 59.148 44.000 0.00 0.00 34.56 3.02
462 464 6.512903 CGACTACGTATGTGTGGATATGAAGT 60.513 42.308 0.00 0.00 34.56 3.01
463 465 6.504398 ACTACGTATGTGTGGATATGAAGTG 58.496 40.000 0.00 0.00 0.00 3.16
464 466 5.592104 ACGTATGTGTGGATATGAAGTGA 57.408 39.130 0.00 0.00 0.00 3.41
465 467 5.592054 ACGTATGTGTGGATATGAAGTGAG 58.408 41.667 0.00 0.00 0.00 3.51
466 468 5.127194 ACGTATGTGTGGATATGAAGTGAGT 59.873 40.000 0.00 0.00 0.00 3.41
467 469 5.460091 CGTATGTGTGGATATGAAGTGAGTG 59.540 44.000 0.00 0.00 0.00 3.51
468 470 3.599343 TGTGTGGATATGAAGTGAGTGC 58.401 45.455 0.00 0.00 0.00 4.40
469 471 3.261643 TGTGTGGATATGAAGTGAGTGCT 59.738 43.478 0.00 0.00 0.00 4.40
470 472 3.620374 GTGTGGATATGAAGTGAGTGCTG 59.380 47.826 0.00 0.00 0.00 4.41
471 473 3.261643 TGTGGATATGAAGTGAGTGCTGT 59.738 43.478 0.00 0.00 0.00 4.40
472 474 4.256920 GTGGATATGAAGTGAGTGCTGTT 58.743 43.478 0.00 0.00 0.00 3.16
473 475 4.093998 GTGGATATGAAGTGAGTGCTGTTG 59.906 45.833 0.00 0.00 0.00 3.33
474 476 4.020307 TGGATATGAAGTGAGTGCTGTTGA 60.020 41.667 0.00 0.00 0.00 3.18
475 477 5.121811 GGATATGAAGTGAGTGCTGTTGAT 58.878 41.667 0.00 0.00 0.00 2.57
476 478 5.587844 GGATATGAAGTGAGTGCTGTTGATT 59.412 40.000 0.00 0.00 0.00 2.57
477 479 6.094603 GGATATGAAGTGAGTGCTGTTGATTT 59.905 38.462 0.00 0.00 0.00 2.17
478 480 4.818534 TGAAGTGAGTGCTGTTGATTTC 57.181 40.909 0.00 0.00 0.00 2.17
479 481 3.565482 TGAAGTGAGTGCTGTTGATTTCC 59.435 43.478 0.00 0.00 0.00 3.13
480 482 3.213206 AGTGAGTGCTGTTGATTTCCA 57.787 42.857 0.00 0.00 0.00 3.53
481 483 3.759581 AGTGAGTGCTGTTGATTTCCAT 58.240 40.909 0.00 0.00 0.00 3.41
482 484 3.504906 AGTGAGTGCTGTTGATTTCCATG 59.495 43.478 0.00 0.00 0.00 3.66
483 485 3.254166 GTGAGTGCTGTTGATTTCCATGT 59.746 43.478 0.00 0.00 0.00 3.21
484 486 3.503363 TGAGTGCTGTTGATTTCCATGTC 59.497 43.478 0.00 0.00 0.00 3.06
485 487 3.489355 AGTGCTGTTGATTTCCATGTCA 58.511 40.909 0.00 0.00 0.00 3.58
486 488 3.254166 AGTGCTGTTGATTTCCATGTCAC 59.746 43.478 0.00 0.00 0.00 3.67
487 489 2.226200 TGCTGTTGATTTCCATGTCACG 59.774 45.455 0.00 0.00 0.00 4.35
488 490 2.226437 GCTGTTGATTTCCATGTCACGT 59.774 45.455 0.00 0.00 0.00 4.49
489 491 3.435327 GCTGTTGATTTCCATGTCACGTA 59.565 43.478 0.00 0.00 0.00 3.57
490 492 4.083537 GCTGTTGATTTCCATGTCACGTAA 60.084 41.667 0.00 0.00 0.00 3.18
491 493 5.561919 GCTGTTGATTTCCATGTCACGTAAA 60.562 40.000 0.00 0.00 0.00 2.01
492 494 5.996219 TGTTGATTTCCATGTCACGTAAAG 58.004 37.500 0.00 0.00 0.00 1.85
493 495 4.678509 TGATTTCCATGTCACGTAAAGC 57.321 40.909 0.00 0.00 0.00 3.51
494 496 3.438781 TGATTTCCATGTCACGTAAAGCC 59.561 43.478 0.00 0.00 0.00 4.35
495 497 2.552599 TTCCATGTCACGTAAAGCCA 57.447 45.000 0.00 0.00 0.00 4.75
496 498 2.779755 TCCATGTCACGTAAAGCCAT 57.220 45.000 0.00 0.00 0.00 4.40
497 499 3.066291 TCCATGTCACGTAAAGCCATT 57.934 42.857 0.00 0.00 0.00 3.16
498 500 3.417101 TCCATGTCACGTAAAGCCATTT 58.583 40.909 0.00 0.00 0.00 2.32
499 501 3.823873 TCCATGTCACGTAAAGCCATTTT 59.176 39.130 0.00 0.00 0.00 1.82
500 502 4.279671 TCCATGTCACGTAAAGCCATTTTT 59.720 37.500 0.00 0.00 0.00 1.94
518 520 3.550437 TTTTGGGACATTGGTGTTTGG 57.450 42.857 0.00 0.00 39.09 3.28
519 521 2.166907 TTGGGACATTGGTGTTTGGT 57.833 45.000 0.00 0.00 39.09 3.67
520 522 1.407936 TGGGACATTGGTGTTTGGTG 58.592 50.000 0.00 0.00 39.09 4.17
521 523 0.033366 GGGACATTGGTGTTTGGTGC 59.967 55.000 0.00 0.00 39.09 5.01
522 524 0.749649 GGACATTGGTGTTTGGTGCA 59.250 50.000 0.00 0.00 39.09 4.57
523 525 1.344114 GGACATTGGTGTTTGGTGCAT 59.656 47.619 0.00 0.00 39.09 3.96
524 526 2.560542 GGACATTGGTGTTTGGTGCATA 59.439 45.455 0.00 0.00 39.09 3.14
525 527 3.195396 GGACATTGGTGTTTGGTGCATAT 59.805 43.478 0.00 0.00 39.09 1.78
526 528 4.175516 GACATTGGTGTTTGGTGCATATG 58.824 43.478 0.00 0.00 39.09 1.78
527 529 3.831333 ACATTGGTGTTTGGTGCATATGA 59.169 39.130 6.97 0.00 34.01 2.15
528 530 4.282957 ACATTGGTGTTTGGTGCATATGAA 59.717 37.500 6.97 0.00 34.01 2.57
529 531 3.932545 TGGTGTTTGGTGCATATGAAC 57.067 42.857 6.97 5.99 0.00 3.18
530 532 3.495331 TGGTGTTTGGTGCATATGAACT 58.505 40.909 13.70 0.00 0.00 3.01
531 533 3.894427 TGGTGTTTGGTGCATATGAACTT 59.106 39.130 13.70 0.00 0.00 2.66
532 534 5.073428 TGGTGTTTGGTGCATATGAACTTA 58.927 37.500 13.70 0.79 0.00 2.24
533 535 5.714333 TGGTGTTTGGTGCATATGAACTTAT 59.286 36.000 13.70 0.00 0.00 1.73
534 536 6.127758 TGGTGTTTGGTGCATATGAACTTATC 60.128 38.462 13.70 3.79 0.00 1.75
535 537 6.095440 GGTGTTTGGTGCATATGAACTTATCT 59.905 38.462 13.70 0.00 0.00 1.98
536 538 7.362920 GGTGTTTGGTGCATATGAACTTATCTT 60.363 37.037 13.70 0.00 0.00 2.40
537 539 7.698130 GTGTTTGGTGCATATGAACTTATCTTC 59.302 37.037 13.70 0.00 0.00 2.87
538 540 7.611467 TGTTTGGTGCATATGAACTTATCTTCT 59.389 33.333 13.70 0.00 0.00 2.85
539 541 8.462016 GTTTGGTGCATATGAACTTATCTTCTT 58.538 33.333 13.70 0.00 0.00 2.52
540 542 7.792374 TGGTGCATATGAACTTATCTTCTTC 57.208 36.000 13.70 0.00 0.00 2.87
541 543 7.568349 TGGTGCATATGAACTTATCTTCTTCT 58.432 34.615 13.70 0.00 0.00 2.85
542 544 8.049117 TGGTGCATATGAACTTATCTTCTTCTT 58.951 33.333 13.70 0.00 0.00 2.52
543 545 8.897752 GGTGCATATGAACTTATCTTCTTCTTT 58.102 33.333 13.70 0.00 0.00 2.52
894 917 0.107017 CATGGAGAGGCGTTGGGAAT 60.107 55.000 0.00 0.00 0.00 3.01
897 920 0.831307 GGAGAGGCGTTGGGAATAGT 59.169 55.000 0.00 0.00 0.00 2.12
1190 1233 1.361993 GTGGGTGCAAATTGACGCA 59.638 52.632 0.00 4.39 35.30 5.24
1470 1526 2.159254 TGCTTTGCTTGACAAGGAACAC 60.159 45.455 20.30 15.43 38.63 3.32
1814 2077 8.593679 TCACTGGATTAACACTGAATTTCTCTA 58.406 33.333 0.00 0.00 0.00 2.43
2232 2597 1.522355 CCTGAACATCTGCGCGGAT 60.522 57.895 26.02 26.02 0.00 4.18
2238 2603 3.244580 ATCTGCGCGGATCCCCAT 61.245 61.111 26.02 3.61 0.00 4.00
2241 2606 3.541950 CTGCGCGGATCCCCATGAT 62.542 63.158 11.90 0.00 36.01 2.45
2318 2683 2.019249 CATTGGAGATGGCAACGACAT 58.981 47.619 0.00 0.00 42.51 3.06
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
107 109 4.421515 CACTCCCTGCCCCAGCTG 62.422 72.222 6.78 6.78 40.80 4.24
108 110 4.664267 TCACTCCCTGCCCCAGCT 62.664 66.667 0.00 0.00 40.80 4.24
109 111 4.106925 CTCACTCCCTGCCCCAGC 62.107 72.222 0.00 0.00 40.48 4.85
110 112 2.608988 ACTCACTCCCTGCCCCAG 60.609 66.667 0.00 0.00 0.00 4.45
111 113 2.930019 CACTCACTCCCTGCCCCA 60.930 66.667 0.00 0.00 0.00 4.96
112 114 2.607750 TCACTCACTCCCTGCCCC 60.608 66.667 0.00 0.00 0.00 5.80
113 115 2.664081 CCTCACTCACTCCCTGCCC 61.664 68.421 0.00 0.00 0.00 5.36
114 116 2.664081 CCCTCACTCACTCCCTGCC 61.664 68.421 0.00 0.00 0.00 4.85
115 117 1.610673 TCCCTCACTCACTCCCTGC 60.611 63.158 0.00 0.00 0.00 4.85
116 118 0.975040 CCTCCCTCACTCACTCCCTG 60.975 65.000 0.00 0.00 0.00 4.45
117 119 1.149782 TCCTCCCTCACTCACTCCCT 61.150 60.000 0.00 0.00 0.00 4.20
118 120 0.252284 TTCCTCCCTCACTCACTCCC 60.252 60.000 0.00 0.00 0.00 4.30
119 121 1.484240 CATTCCTCCCTCACTCACTCC 59.516 57.143 0.00 0.00 0.00 3.85
120 122 2.430332 CTCATTCCTCCCTCACTCACTC 59.570 54.545 0.00 0.00 0.00 3.51
121 123 2.465813 CTCATTCCTCCCTCACTCACT 58.534 52.381 0.00 0.00 0.00 3.41
122 124 1.134551 GCTCATTCCTCCCTCACTCAC 60.135 57.143 0.00 0.00 0.00 3.51
123 125 1.198713 GCTCATTCCTCCCTCACTCA 58.801 55.000 0.00 0.00 0.00 3.41
124 126 1.198713 TGCTCATTCCTCCCTCACTC 58.801 55.000 0.00 0.00 0.00 3.51
125 127 1.558756 CTTGCTCATTCCTCCCTCACT 59.441 52.381 0.00 0.00 0.00 3.41
126 128 1.556911 TCTTGCTCATTCCTCCCTCAC 59.443 52.381 0.00 0.00 0.00 3.51
127 129 1.836166 CTCTTGCTCATTCCTCCCTCA 59.164 52.381 0.00 0.00 0.00 3.86
128 130 1.140652 CCTCTTGCTCATTCCTCCCTC 59.859 57.143 0.00 0.00 0.00 4.30
129 131 1.211456 CCTCTTGCTCATTCCTCCCT 58.789 55.000 0.00 0.00 0.00 4.20
130 132 1.134250 GTCCTCTTGCTCATTCCTCCC 60.134 57.143 0.00 0.00 0.00 4.30
131 133 1.556911 TGTCCTCTTGCTCATTCCTCC 59.443 52.381 0.00 0.00 0.00 4.30
132 134 3.055530 TCTTGTCCTCTTGCTCATTCCTC 60.056 47.826 0.00 0.00 0.00 3.71
133 135 2.909006 TCTTGTCCTCTTGCTCATTCCT 59.091 45.455 0.00 0.00 0.00 3.36
134 136 3.269178 CTCTTGTCCTCTTGCTCATTCC 58.731 50.000 0.00 0.00 0.00 3.01
135 137 3.269178 CCTCTTGTCCTCTTGCTCATTC 58.731 50.000 0.00 0.00 0.00 2.67
136 138 2.617532 GCCTCTTGTCCTCTTGCTCATT 60.618 50.000 0.00 0.00 0.00 2.57
137 139 1.065564 GCCTCTTGTCCTCTTGCTCAT 60.066 52.381 0.00 0.00 0.00 2.90
138 140 0.322975 GCCTCTTGTCCTCTTGCTCA 59.677 55.000 0.00 0.00 0.00 4.26
139 141 0.739112 CGCCTCTTGTCCTCTTGCTC 60.739 60.000 0.00 0.00 0.00 4.26
140 142 1.294780 CGCCTCTTGTCCTCTTGCT 59.705 57.895 0.00 0.00 0.00 3.91
141 143 2.394563 GCGCCTCTTGTCCTCTTGC 61.395 63.158 0.00 0.00 0.00 4.01
142 144 1.004560 TGCGCCTCTTGTCCTCTTG 60.005 57.895 4.18 0.00 0.00 3.02
143 145 1.294780 CTGCGCCTCTTGTCCTCTT 59.705 57.895 4.18 0.00 0.00 2.85
144 146 2.977178 CTGCGCCTCTTGTCCTCT 59.023 61.111 4.18 0.00 0.00 3.69
145 147 2.817396 GCTGCGCCTCTTGTCCTC 60.817 66.667 4.18 0.00 0.00 3.71
146 148 4.749310 CGCTGCGCCTCTTGTCCT 62.749 66.667 9.88 0.00 0.00 3.85
158 160 4.338539 ACTGCTTTGCTGCGCTGC 62.339 61.111 29.76 29.76 35.36 5.25
159 161 2.428569 CACTGCTTTGCTGCGCTG 60.429 61.111 9.73 10.04 35.36 5.18
160 162 2.903855 ACACTGCTTTGCTGCGCT 60.904 55.556 9.73 0.00 35.36 5.92
161 163 2.728383 CACACTGCTTTGCTGCGC 60.728 61.111 0.00 0.00 35.36 6.09
162 164 2.050714 CCACACTGCTTTGCTGCG 60.051 61.111 0.00 0.00 35.36 5.18
163 165 0.179103 AAACCACACTGCTTTGCTGC 60.179 50.000 0.00 0.00 0.00 5.25
164 166 3.648339 ATAAACCACACTGCTTTGCTG 57.352 42.857 0.00 0.00 0.00 4.41
165 167 4.099266 TCAAATAAACCACACTGCTTTGCT 59.901 37.500 0.00 0.00 0.00 3.91
166 168 4.367450 TCAAATAAACCACACTGCTTTGC 58.633 39.130 0.00 0.00 0.00 3.68
167 169 5.234116 GGTTCAAATAAACCACACTGCTTTG 59.766 40.000 1.00 0.00 46.62 2.77
168 170 5.356426 GGTTCAAATAAACCACACTGCTTT 58.644 37.500 1.00 0.00 46.62 3.51
169 171 4.944048 GGTTCAAATAAACCACACTGCTT 58.056 39.130 1.00 0.00 46.62 3.91
170 172 4.584327 GGTTCAAATAAACCACACTGCT 57.416 40.909 1.00 0.00 46.62 4.24
179 181 6.669741 GCAGCGCAAAATAGGTTCAAATAAAC 60.670 38.462 11.47 0.00 0.00 2.01
180 182 5.347364 GCAGCGCAAAATAGGTTCAAATAAA 59.653 36.000 11.47 0.00 0.00 1.40
181 183 4.862018 GCAGCGCAAAATAGGTTCAAATAA 59.138 37.500 11.47 0.00 0.00 1.40
182 184 4.420168 GCAGCGCAAAATAGGTTCAAATA 58.580 39.130 11.47 0.00 0.00 1.40
183 185 3.253230 GCAGCGCAAAATAGGTTCAAAT 58.747 40.909 11.47 0.00 0.00 2.32
184 186 2.609244 GGCAGCGCAAAATAGGTTCAAA 60.609 45.455 11.47 0.00 0.00 2.69
185 187 1.067915 GGCAGCGCAAAATAGGTTCAA 60.068 47.619 11.47 0.00 0.00 2.69
186 188 0.525761 GGCAGCGCAAAATAGGTTCA 59.474 50.000 11.47 0.00 0.00 3.18
187 189 0.525761 TGGCAGCGCAAAATAGGTTC 59.474 50.000 11.47 0.00 0.00 3.62
188 190 0.527565 CTGGCAGCGCAAAATAGGTT 59.472 50.000 11.47 0.00 0.00 3.50
189 191 1.937546 GCTGGCAGCGCAAAATAGGT 61.938 55.000 25.47 0.00 0.00 3.08
190 192 1.226773 GCTGGCAGCGCAAAATAGG 60.227 57.895 25.47 0.00 0.00 2.57
191 193 1.226773 GGCTGGCAGCGCAAAATAG 60.227 57.895 31.22 1.95 43.62 1.73
192 194 2.884367 GGCTGGCAGCGCAAAATA 59.116 55.556 31.22 0.00 43.62 1.40
193 195 4.424566 CGGCTGGCAGCGCAAAAT 62.425 61.111 31.22 0.00 43.62 1.82
212 214 4.697756 TGCTGCCCACTGTACGGC 62.698 66.667 10.35 10.35 45.92 5.68
213 215 2.742372 GTGCTGCCCACTGTACGG 60.742 66.667 0.00 0.00 41.35 4.02
220 222 2.036256 ATTCCCAGTGCTGCCCAC 59.964 61.111 0.00 0.00 45.01 4.61
221 223 2.036098 CATTCCCAGTGCTGCCCA 59.964 61.111 0.00 0.00 0.00 5.36
222 224 1.751927 CTCATTCCCAGTGCTGCCC 60.752 63.158 0.00 0.00 0.00 5.36
223 225 2.413142 GCTCATTCCCAGTGCTGCC 61.413 63.158 0.00 0.00 0.00 4.85
224 226 1.654954 CTGCTCATTCCCAGTGCTGC 61.655 60.000 0.00 0.00 0.00 5.25
225 227 0.322277 ACTGCTCATTCCCAGTGCTG 60.322 55.000 0.00 0.00 40.55 4.41
226 228 2.073232 ACTGCTCATTCCCAGTGCT 58.927 52.632 0.00 0.00 40.55 4.40
227 229 4.730487 ACTGCTCATTCCCAGTGC 57.270 55.556 0.00 0.00 40.55 4.40
229 231 1.064906 CCATCACTGCTCATTCCCAGT 60.065 52.381 0.00 0.00 42.67 4.00
230 232 1.676746 CCATCACTGCTCATTCCCAG 58.323 55.000 0.00 0.00 35.26 4.45
231 233 0.394762 GCCATCACTGCTCATTCCCA 60.395 55.000 0.00 0.00 0.00 4.37
232 234 1.442526 CGCCATCACTGCTCATTCCC 61.443 60.000 0.00 0.00 0.00 3.97
233 235 0.462581 TCGCCATCACTGCTCATTCC 60.463 55.000 0.00 0.00 0.00 3.01
234 236 1.263484 CATCGCCATCACTGCTCATTC 59.737 52.381 0.00 0.00 0.00 2.67
235 237 1.306148 CATCGCCATCACTGCTCATT 58.694 50.000 0.00 0.00 0.00 2.57
236 238 0.534427 CCATCGCCATCACTGCTCAT 60.534 55.000 0.00 0.00 0.00 2.90
237 239 1.153309 CCATCGCCATCACTGCTCA 60.153 57.895 0.00 0.00 0.00 4.26
238 240 1.153289 ACCATCGCCATCACTGCTC 60.153 57.895 0.00 0.00 0.00 4.26
239 241 1.450848 CACCATCGCCATCACTGCT 60.451 57.895 0.00 0.00 0.00 4.24
240 242 1.450134 TCACCATCGCCATCACTGC 60.450 57.895 0.00 0.00 0.00 4.40
241 243 1.423721 CGTCACCATCGCCATCACTG 61.424 60.000 0.00 0.00 0.00 3.66
242 244 1.153568 CGTCACCATCGCCATCACT 60.154 57.895 0.00 0.00 0.00 3.41
243 245 2.813179 GCGTCACCATCGCCATCAC 61.813 63.158 0.00 0.00 46.61 3.06
244 246 2.511373 GCGTCACCATCGCCATCA 60.511 61.111 0.00 0.00 46.61 3.07
250 252 0.999406 CTAAACCAGCGTCACCATCG 59.001 55.000 0.00 0.00 0.00 3.84
251 253 2.380084 TCTAAACCAGCGTCACCATC 57.620 50.000 0.00 0.00 0.00 3.51
252 254 2.851263 TTCTAAACCAGCGTCACCAT 57.149 45.000 0.00 0.00 0.00 3.55
253 255 2.623878 TTTCTAAACCAGCGTCACCA 57.376 45.000 0.00 0.00 0.00 4.17
254 256 3.974871 TTTTTCTAAACCAGCGTCACC 57.025 42.857 0.00 0.00 0.00 4.02
255 257 8.193250 TCTATATTTTTCTAAACCAGCGTCAC 57.807 34.615 0.00 0.00 0.00 3.67
256 258 8.826710 CATCTATATTTTTCTAAACCAGCGTCA 58.173 33.333 0.00 0.00 0.00 4.35
257 259 7.798982 GCATCTATATTTTTCTAAACCAGCGTC 59.201 37.037 0.00 0.00 0.00 5.19
258 260 7.499232 AGCATCTATATTTTTCTAAACCAGCGT 59.501 33.333 0.00 0.00 0.00 5.07
259 261 7.865707 AGCATCTATATTTTTCTAAACCAGCG 58.134 34.615 0.00 0.00 0.00 5.18
268 270 9.205513 ACCCAATCAAAGCATCTATATTTTTCT 57.794 29.630 0.00 0.00 0.00 2.52
269 271 9.252962 CACCCAATCAAAGCATCTATATTTTTC 57.747 33.333 0.00 0.00 0.00 2.29
270 272 7.712205 GCACCCAATCAAAGCATCTATATTTTT 59.288 33.333 0.00 0.00 0.00 1.94
271 273 7.070322 AGCACCCAATCAAAGCATCTATATTTT 59.930 33.333 0.00 0.00 0.00 1.82
272 274 6.552350 AGCACCCAATCAAAGCATCTATATTT 59.448 34.615 0.00 0.00 0.00 1.40
273 275 6.073314 AGCACCCAATCAAAGCATCTATATT 58.927 36.000 0.00 0.00 0.00 1.28
274 276 5.638133 AGCACCCAATCAAAGCATCTATAT 58.362 37.500 0.00 0.00 0.00 0.86
275 277 5.052693 AGCACCCAATCAAAGCATCTATA 57.947 39.130 0.00 0.00 0.00 1.31
276 278 3.907221 AGCACCCAATCAAAGCATCTAT 58.093 40.909 0.00 0.00 0.00 1.98
277 279 3.370840 AGCACCCAATCAAAGCATCTA 57.629 42.857 0.00 0.00 0.00 1.98
278 280 2.226962 AGCACCCAATCAAAGCATCT 57.773 45.000 0.00 0.00 0.00 2.90
279 281 4.098349 TCATTAGCACCCAATCAAAGCATC 59.902 41.667 0.00 0.00 0.00 3.91
280 282 4.025360 TCATTAGCACCCAATCAAAGCAT 58.975 39.130 0.00 0.00 0.00 3.79
281 283 3.429492 TCATTAGCACCCAATCAAAGCA 58.571 40.909 0.00 0.00 0.00 3.91
282 284 4.454728 TTCATTAGCACCCAATCAAAGC 57.545 40.909 0.00 0.00 0.00 3.51
283 285 5.813672 CCATTTCATTAGCACCCAATCAAAG 59.186 40.000 0.00 0.00 0.00 2.77
284 286 5.338219 CCCATTTCATTAGCACCCAATCAAA 60.338 40.000 0.00 0.00 0.00 2.69
285 287 4.161942 CCCATTTCATTAGCACCCAATCAA 59.838 41.667 0.00 0.00 0.00 2.57
286 288 3.705579 CCCATTTCATTAGCACCCAATCA 59.294 43.478 0.00 0.00 0.00 2.57
287 289 3.070015 CCCCATTTCATTAGCACCCAATC 59.930 47.826 0.00 0.00 0.00 2.67
288 290 3.040477 CCCCATTTCATTAGCACCCAAT 58.960 45.455 0.00 0.00 0.00 3.16
289 291 2.043664 TCCCCATTTCATTAGCACCCAA 59.956 45.455 0.00 0.00 0.00 4.12
290 292 1.643286 TCCCCATTTCATTAGCACCCA 59.357 47.619 0.00 0.00 0.00 4.51
291 293 2.310538 CTCCCCATTTCATTAGCACCC 58.689 52.381 0.00 0.00 0.00 4.61
292 294 2.091885 TCCTCCCCATTTCATTAGCACC 60.092 50.000 0.00 0.00 0.00 5.01
293 295 3.297134 TCCTCCCCATTTCATTAGCAC 57.703 47.619 0.00 0.00 0.00 4.40
294 296 4.217510 CATTCCTCCCCATTTCATTAGCA 58.782 43.478 0.00 0.00 0.00 3.49
295 297 3.575687 CCATTCCTCCCCATTTCATTAGC 59.424 47.826 0.00 0.00 0.00 3.09
296 298 3.575687 GCCATTCCTCCCCATTTCATTAG 59.424 47.826 0.00 0.00 0.00 1.73
297 299 3.207321 AGCCATTCCTCCCCATTTCATTA 59.793 43.478 0.00 0.00 0.00 1.90
298 300 2.022722 AGCCATTCCTCCCCATTTCATT 60.023 45.455 0.00 0.00 0.00 2.57
299 301 1.577242 AGCCATTCCTCCCCATTTCAT 59.423 47.619 0.00 0.00 0.00 2.57
300 302 1.009997 AGCCATTCCTCCCCATTTCA 58.990 50.000 0.00 0.00 0.00 2.69
301 303 1.697284 GAGCCATTCCTCCCCATTTC 58.303 55.000 0.00 0.00 0.00 2.17
302 304 0.106519 CGAGCCATTCCTCCCCATTT 60.107 55.000 0.00 0.00 0.00 2.32
303 305 0.988145 TCGAGCCATTCCTCCCCATT 60.988 55.000 0.00 0.00 0.00 3.16
304 306 1.384502 TCGAGCCATTCCTCCCCAT 60.385 57.895 0.00 0.00 0.00 4.00
305 307 2.040442 TCGAGCCATTCCTCCCCA 59.960 61.111 0.00 0.00 0.00 4.96
306 308 2.812619 CCTCGAGCCATTCCTCCCC 61.813 68.421 6.99 0.00 0.00 4.81
307 309 2.812619 CCCTCGAGCCATTCCTCCC 61.813 68.421 6.99 0.00 0.00 4.30
308 310 1.338136 TTCCCTCGAGCCATTCCTCC 61.338 60.000 6.99 0.00 0.00 4.30
309 311 0.179070 GTTCCCTCGAGCCATTCCTC 60.179 60.000 6.99 0.00 0.00 3.71
310 312 1.627297 GGTTCCCTCGAGCCATTCCT 61.627 60.000 6.99 0.00 39.15 3.36
311 313 1.153147 GGTTCCCTCGAGCCATTCC 60.153 63.158 6.99 1.64 39.15 3.01
312 314 1.602237 TGGTTCCCTCGAGCCATTC 59.398 57.895 6.99 0.00 43.80 2.67
313 315 3.820425 TGGTTCCCTCGAGCCATT 58.180 55.556 6.99 0.00 43.80 3.16
315 317 3.003173 CCTGGTTCCCTCGAGCCA 61.003 66.667 6.99 8.14 46.20 4.75
316 318 3.787001 CCCTGGTTCCCTCGAGCC 61.787 72.222 6.99 3.10 39.75 4.70
317 319 3.787001 CCCCTGGTTCCCTCGAGC 61.787 72.222 6.99 0.00 0.00 5.03
318 320 3.787001 GCCCCTGGTTCCCTCGAG 61.787 72.222 5.13 5.13 0.00 4.04
319 321 4.649705 TGCCCCTGGTTCCCTCGA 62.650 66.667 0.00 0.00 0.00 4.04
320 322 2.706952 TTTTGCCCCTGGTTCCCTCG 62.707 60.000 0.00 0.00 0.00 4.63
321 323 0.900182 CTTTTGCCCCTGGTTCCCTC 60.900 60.000 0.00 0.00 0.00 4.30
322 324 1.156095 CTTTTGCCCCTGGTTCCCT 59.844 57.895 0.00 0.00 0.00 4.20
323 325 1.913262 CCTTTTGCCCCTGGTTCCC 60.913 63.158 0.00 0.00 0.00 3.97
324 326 0.113580 TACCTTTTGCCCCTGGTTCC 59.886 55.000 0.00 0.00 34.33 3.62
325 327 1.545841 CTACCTTTTGCCCCTGGTTC 58.454 55.000 0.00 0.00 34.33 3.62
326 328 0.114364 CCTACCTTTTGCCCCTGGTT 59.886 55.000 0.00 0.00 34.33 3.67
327 329 1.774300 CCTACCTTTTGCCCCTGGT 59.226 57.895 0.00 0.00 36.66 4.00
328 330 1.000359 CCCTACCTTTTGCCCCTGG 60.000 63.158 0.00 0.00 0.00 4.45
329 331 1.682344 GCCCTACCTTTTGCCCCTG 60.682 63.158 0.00 0.00 0.00 4.45
330 332 1.857348 AGCCCTACCTTTTGCCCCT 60.857 57.895 0.00 0.00 0.00 4.79
331 333 1.682344 CAGCCCTACCTTTTGCCCC 60.682 63.158 0.00 0.00 0.00 5.80
332 334 1.076727 ACAGCCCTACCTTTTGCCC 59.923 57.895 0.00 0.00 0.00 5.36
333 335 1.250840 CCACAGCCCTACCTTTTGCC 61.251 60.000 0.00 0.00 0.00 4.52
334 336 0.539669 ACCACAGCCCTACCTTTTGC 60.540 55.000 0.00 0.00 0.00 3.68
335 337 1.886542 GAACCACAGCCCTACCTTTTG 59.113 52.381 0.00 0.00 0.00 2.44
336 338 1.203013 GGAACCACAGCCCTACCTTTT 60.203 52.381 0.00 0.00 0.00 2.27
337 339 0.404426 GGAACCACAGCCCTACCTTT 59.596 55.000 0.00 0.00 0.00 3.11
338 340 0.770557 TGGAACCACAGCCCTACCTT 60.771 55.000 0.00 0.00 0.00 3.50
339 341 0.550147 ATGGAACCACAGCCCTACCT 60.550 55.000 0.00 0.00 0.00 3.08
340 342 0.107165 GATGGAACCACAGCCCTACC 60.107 60.000 0.00 0.00 0.00 3.18
341 343 0.912486 AGATGGAACCACAGCCCTAC 59.088 55.000 0.00 0.00 0.00 3.18
342 344 1.668826 AAGATGGAACCACAGCCCTA 58.331 50.000 0.00 0.00 0.00 3.53
343 345 0.779997 AAAGATGGAACCACAGCCCT 59.220 50.000 0.00 0.00 0.00 5.19
344 346 2.507407 TAAAGATGGAACCACAGCCC 57.493 50.000 0.00 0.00 0.00 5.19
345 347 5.067805 CCTAATTAAAGATGGAACCACAGCC 59.932 44.000 0.00 0.00 0.00 4.85
346 348 5.450550 GCCTAATTAAAGATGGAACCACAGC 60.451 44.000 0.00 0.00 0.00 4.40
347 349 5.652014 TGCCTAATTAAAGATGGAACCACAG 59.348 40.000 0.00 0.00 0.00 3.66
348 350 5.575157 TGCCTAATTAAAGATGGAACCACA 58.425 37.500 0.00 0.00 0.00 4.17
349 351 6.461509 CCATGCCTAATTAAAGATGGAACCAC 60.462 42.308 9.33 0.00 33.52 4.16
350 352 5.598005 CCATGCCTAATTAAAGATGGAACCA 59.402 40.000 9.33 0.00 33.52 3.67
351 353 5.509670 GCCATGCCTAATTAAAGATGGAACC 60.510 44.000 15.67 0.00 33.52 3.62
352 354 5.068987 TGCCATGCCTAATTAAAGATGGAAC 59.931 40.000 15.67 4.76 33.52 3.62
353 355 5.207354 TGCCATGCCTAATTAAAGATGGAA 58.793 37.500 15.67 6.66 33.52 3.53
354 356 4.802307 TGCCATGCCTAATTAAAGATGGA 58.198 39.130 15.67 3.95 33.52 3.41
355 357 5.475719 CATGCCATGCCTAATTAAAGATGG 58.524 41.667 10.16 10.16 34.62 3.51
356 358 5.475719 CCATGCCATGCCTAATTAAAGATG 58.524 41.667 0.00 0.00 0.00 2.90
357 359 4.020839 GCCATGCCATGCCTAATTAAAGAT 60.021 41.667 0.00 0.00 0.00 2.40
358 360 3.321682 GCCATGCCATGCCTAATTAAAGA 59.678 43.478 0.00 0.00 0.00 2.52
359 361 3.069872 TGCCATGCCATGCCTAATTAAAG 59.930 43.478 0.00 0.00 0.00 1.85
360 362 3.036819 TGCCATGCCATGCCTAATTAAA 58.963 40.909 0.00 0.00 0.00 1.52
361 363 2.675583 TGCCATGCCATGCCTAATTAA 58.324 42.857 0.00 0.00 0.00 1.40
362 364 2.378378 TGCCATGCCATGCCTAATTA 57.622 45.000 0.00 0.00 0.00 1.40
363 365 1.621814 GATGCCATGCCATGCCTAATT 59.378 47.619 0.00 0.00 0.00 1.40
364 366 1.263356 GATGCCATGCCATGCCTAAT 58.737 50.000 0.00 0.00 0.00 1.73
365 367 0.828762 GGATGCCATGCCATGCCTAA 60.829 55.000 0.00 0.00 0.00 2.69
366 368 1.228644 GGATGCCATGCCATGCCTA 60.229 57.895 0.00 0.00 0.00 3.93
367 369 2.523412 GGATGCCATGCCATGCCT 60.523 61.111 0.00 0.00 0.00 4.75
368 370 3.986006 CGGATGCCATGCCATGCC 61.986 66.667 2.46 0.00 30.74 4.40
369 371 3.986006 CCGGATGCCATGCCATGC 61.986 66.667 0.00 0.00 0.00 4.06
370 372 2.520020 ACCGGATGCCATGCCATG 60.520 61.111 9.46 0.00 0.00 3.66
371 373 2.520020 CACCGGATGCCATGCCAT 60.520 61.111 9.46 0.00 0.00 4.40
380 382 1.243342 TGCAAAAGGAGCACCGGATG 61.243 55.000 9.46 3.68 41.83 3.51
381 383 1.074775 TGCAAAAGGAGCACCGGAT 59.925 52.632 9.46 0.00 41.83 4.18
382 384 2.513395 TGCAAAAGGAGCACCGGA 59.487 55.556 9.46 0.00 41.83 5.14
391 393 0.030638 CAACGACCCTGTGCAAAAGG 59.969 55.000 9.35 9.35 42.87 3.11
392 394 1.021202 TCAACGACCCTGTGCAAAAG 58.979 50.000 0.00 0.00 0.00 2.27
393 395 1.686355 ATCAACGACCCTGTGCAAAA 58.314 45.000 0.00 0.00 0.00 2.44
394 396 2.550606 GTTATCAACGACCCTGTGCAAA 59.449 45.455 0.00 0.00 0.00 3.68
395 397 2.147958 GTTATCAACGACCCTGTGCAA 58.852 47.619 0.00 0.00 0.00 4.08
396 398 1.803334 GTTATCAACGACCCTGTGCA 58.197 50.000 0.00 0.00 0.00 4.57
407 409 6.032460 GCACAGCATTTTTCTACGTTATCAAC 59.968 38.462 0.00 0.00 0.00 3.18
408 410 6.072728 AGCACAGCATTTTTCTACGTTATCAA 60.073 34.615 0.00 0.00 0.00 2.57
409 411 5.411361 AGCACAGCATTTTTCTACGTTATCA 59.589 36.000 0.00 0.00 0.00 2.15
410 412 5.869350 AGCACAGCATTTTTCTACGTTATC 58.131 37.500 0.00 0.00 0.00 1.75
411 413 5.643777 AGAGCACAGCATTTTTCTACGTTAT 59.356 36.000 0.00 0.00 0.00 1.89
412 414 4.994852 AGAGCACAGCATTTTTCTACGTTA 59.005 37.500 0.00 0.00 0.00 3.18
413 415 3.815401 AGAGCACAGCATTTTTCTACGTT 59.185 39.130 0.00 0.00 0.00 3.99
414 416 3.403038 AGAGCACAGCATTTTTCTACGT 58.597 40.909 0.00 0.00 0.00 3.57
415 417 4.886971 GTAGAGCACAGCATTTTTCTACG 58.113 43.478 0.00 0.00 31.09 3.51
416 418 4.625742 TCGTAGAGCACAGCATTTTTCTAC 59.374 41.667 7.32 7.32 35.73 2.59
417 419 4.625742 GTCGTAGAGCACAGCATTTTTCTA 59.374 41.667 0.00 0.00 36.95 2.10
418 420 3.433615 GTCGTAGAGCACAGCATTTTTCT 59.566 43.478 0.00 0.00 36.95 2.52
419 421 3.433615 AGTCGTAGAGCACAGCATTTTTC 59.566 43.478 0.00 0.00 36.95 2.29
420 422 3.403038 AGTCGTAGAGCACAGCATTTTT 58.597 40.909 0.00 0.00 36.95 1.94
421 423 3.045601 AGTCGTAGAGCACAGCATTTT 57.954 42.857 0.00 0.00 36.95 1.82
422 424 2.751166 AGTCGTAGAGCACAGCATTT 57.249 45.000 0.00 0.00 36.95 2.32
423 425 2.478031 CGTAGTCGTAGAGCACAGCATT 60.478 50.000 0.00 0.00 36.95 3.56
424 426 1.064208 CGTAGTCGTAGAGCACAGCAT 59.936 52.381 0.00 0.00 36.95 3.79
425 427 0.446616 CGTAGTCGTAGAGCACAGCA 59.553 55.000 0.00 0.00 36.95 4.41
426 428 3.221834 CGTAGTCGTAGAGCACAGC 57.778 57.895 0.00 0.00 36.95 4.40
437 439 5.352643 TCATATCCACACATACGTAGTCG 57.647 43.478 0.08 0.00 43.93 4.18
438 440 6.637254 CACTTCATATCCACACATACGTAGTC 59.363 42.308 0.08 0.00 43.93 2.59
440 442 6.735130 TCACTTCATATCCACACATACGTAG 58.265 40.000 0.08 0.00 0.00 3.51
441 443 6.320418 ACTCACTTCATATCCACACATACGTA 59.680 38.462 0.00 0.00 0.00 3.57
442 444 5.127194 ACTCACTTCATATCCACACATACGT 59.873 40.000 0.00 0.00 0.00 3.57
443 445 5.460091 CACTCACTTCATATCCACACATACG 59.540 44.000 0.00 0.00 0.00 3.06
444 446 5.235186 GCACTCACTTCATATCCACACATAC 59.765 44.000 0.00 0.00 0.00 2.39
445 447 5.129320 AGCACTCACTTCATATCCACACATA 59.871 40.000 0.00 0.00 0.00 2.29
446 448 4.080695 AGCACTCACTTCATATCCACACAT 60.081 41.667 0.00 0.00 0.00 3.21
447 449 3.261643 AGCACTCACTTCATATCCACACA 59.738 43.478 0.00 0.00 0.00 3.72
448 450 3.620374 CAGCACTCACTTCATATCCACAC 59.380 47.826 0.00 0.00 0.00 3.82
449 451 3.261643 ACAGCACTCACTTCATATCCACA 59.738 43.478 0.00 0.00 0.00 4.17
450 452 3.866651 ACAGCACTCACTTCATATCCAC 58.133 45.455 0.00 0.00 0.00 4.02
451 453 4.020307 TCAACAGCACTCACTTCATATCCA 60.020 41.667 0.00 0.00 0.00 3.41
452 454 4.507710 TCAACAGCACTCACTTCATATCC 58.492 43.478 0.00 0.00 0.00 2.59
453 455 6.674694 AATCAACAGCACTCACTTCATATC 57.325 37.500 0.00 0.00 0.00 1.63
454 456 6.094603 GGAAATCAACAGCACTCACTTCATAT 59.905 38.462 0.00 0.00 0.00 1.78
455 457 5.412594 GGAAATCAACAGCACTCACTTCATA 59.587 40.000 0.00 0.00 0.00 2.15
456 458 4.217118 GGAAATCAACAGCACTCACTTCAT 59.783 41.667 0.00 0.00 0.00 2.57
457 459 3.565482 GGAAATCAACAGCACTCACTTCA 59.435 43.478 0.00 0.00 0.00 3.02
458 460 3.565482 TGGAAATCAACAGCACTCACTTC 59.435 43.478 0.00 0.00 0.00 3.01
459 461 3.554934 TGGAAATCAACAGCACTCACTT 58.445 40.909 0.00 0.00 0.00 3.16
460 462 3.213206 TGGAAATCAACAGCACTCACT 57.787 42.857 0.00 0.00 0.00 3.41
461 463 3.254166 ACATGGAAATCAACAGCACTCAC 59.746 43.478 0.00 0.00 0.00 3.51
462 464 3.489355 ACATGGAAATCAACAGCACTCA 58.511 40.909 0.00 0.00 0.00 3.41
463 465 3.503363 TGACATGGAAATCAACAGCACTC 59.497 43.478 0.00 0.00 0.00 3.51
464 466 3.254166 GTGACATGGAAATCAACAGCACT 59.746 43.478 0.00 0.00 0.00 4.40
465 467 3.568538 GTGACATGGAAATCAACAGCAC 58.431 45.455 0.00 0.00 0.00 4.40
466 468 2.226200 CGTGACATGGAAATCAACAGCA 59.774 45.455 0.00 0.00 0.00 4.41
467 469 2.226437 ACGTGACATGGAAATCAACAGC 59.774 45.455 0.00 0.00 0.00 4.40
468 470 5.605564 TTACGTGACATGGAAATCAACAG 57.394 39.130 0.00 0.00 0.00 3.16
469 471 5.561919 GCTTTACGTGACATGGAAATCAACA 60.562 40.000 5.50 0.00 0.00 3.33
470 472 4.851558 GCTTTACGTGACATGGAAATCAAC 59.148 41.667 5.50 0.00 0.00 3.18
471 473 4.083003 GGCTTTACGTGACATGGAAATCAA 60.083 41.667 5.50 0.00 0.00 2.57
472 474 3.438781 GGCTTTACGTGACATGGAAATCA 59.561 43.478 5.50 0.00 0.00 2.57
473 475 3.438781 TGGCTTTACGTGACATGGAAATC 59.561 43.478 5.50 1.80 0.00 2.17
474 476 3.417101 TGGCTTTACGTGACATGGAAAT 58.583 40.909 5.50 0.00 0.00 2.17
475 477 2.852449 TGGCTTTACGTGACATGGAAA 58.148 42.857 4.96 4.96 0.00 3.13
476 478 2.552599 TGGCTTTACGTGACATGGAA 57.447 45.000 0.00 0.00 0.00 3.53
477 479 2.779755 ATGGCTTTACGTGACATGGA 57.220 45.000 0.00 0.00 0.00 3.41
478 480 3.848272 AAATGGCTTTACGTGACATGG 57.152 42.857 0.00 0.00 0.00 3.66
497 499 3.264450 ACCAAACACCAATGTCCCAAAAA 59.736 39.130 0.00 0.00 38.45 1.94
498 500 2.840651 ACCAAACACCAATGTCCCAAAA 59.159 40.909 0.00 0.00 38.45 2.44
499 501 2.169352 CACCAAACACCAATGTCCCAAA 59.831 45.455 0.00 0.00 38.45 3.28
500 502 1.759445 CACCAAACACCAATGTCCCAA 59.241 47.619 0.00 0.00 38.45 4.12
501 503 1.407936 CACCAAACACCAATGTCCCA 58.592 50.000 0.00 0.00 38.45 4.37
502 504 0.033366 GCACCAAACACCAATGTCCC 59.967 55.000 0.00 0.00 38.45 4.46
503 505 0.749649 TGCACCAAACACCAATGTCC 59.250 50.000 0.00 0.00 38.45 4.02
504 506 2.818130 ATGCACCAAACACCAATGTC 57.182 45.000 0.00 0.00 38.45 3.06
505 507 3.831333 TCATATGCACCAAACACCAATGT 59.169 39.130 0.00 0.00 42.46 2.71
506 508 4.453177 TCATATGCACCAAACACCAATG 57.547 40.909 0.00 0.00 0.00 2.82
507 509 4.527816 AGTTCATATGCACCAAACACCAAT 59.472 37.500 1.59 0.00 0.00 3.16
508 510 3.894427 AGTTCATATGCACCAAACACCAA 59.106 39.130 1.59 0.00 0.00 3.67
509 511 3.495331 AGTTCATATGCACCAAACACCA 58.505 40.909 1.59 0.00 0.00 4.17
510 512 4.519540 AAGTTCATATGCACCAAACACC 57.480 40.909 1.59 0.00 0.00 4.16
511 513 7.088589 AGATAAGTTCATATGCACCAAACAC 57.911 36.000 1.59 0.00 0.00 3.32
512 514 7.611467 AGAAGATAAGTTCATATGCACCAAACA 59.389 33.333 1.59 0.00 0.00 2.83
513 515 7.989826 AGAAGATAAGTTCATATGCACCAAAC 58.010 34.615 1.59 0.00 0.00 2.93
514 516 8.579850 AAGAAGATAAGTTCATATGCACCAAA 57.420 30.769 1.59 0.00 0.00 3.28
515 517 8.049117 AGAAGAAGATAAGTTCATATGCACCAA 58.951 33.333 1.59 0.00 0.00 3.67
516 518 7.568349 AGAAGAAGATAAGTTCATATGCACCA 58.432 34.615 1.59 0.00 0.00 4.17
517 519 8.443953 AAGAAGAAGATAAGTTCATATGCACC 57.556 34.615 1.59 0.00 0.00 5.01
542 544 8.862085 CCCCAGGTGTAATTAACTCTTTTAAAA 58.138 33.333 0.00 0.00 0.00 1.52
543 545 8.005976 ACCCCAGGTGTAATTAACTCTTTTAAA 58.994 33.333 0.00 0.00 32.98 1.52
544 546 7.528675 ACCCCAGGTGTAATTAACTCTTTTAA 58.471 34.615 0.00 0.00 32.98 1.52
545 547 7.093965 ACCCCAGGTGTAATTAACTCTTTTA 57.906 36.000 0.00 0.00 32.98 1.52
546 548 5.960704 ACCCCAGGTGTAATTAACTCTTTT 58.039 37.500 0.00 0.00 32.98 2.27
547 549 5.594199 ACCCCAGGTGTAATTAACTCTTT 57.406 39.130 0.00 0.00 32.98 2.52
701 704 4.715523 CACGGCCGACCCCATTGT 62.716 66.667 35.90 1.64 0.00 2.71
743 746 2.544844 ATCTCGGTAAACTGAGGGGA 57.455 50.000 16.89 1.25 46.70 4.81
894 917 1.270625 CCGGCTTGGTTGAAGACACTA 60.271 52.381 0.00 0.00 40.17 2.74
897 920 1.896660 GCCGGCTTGGTTGAAGACA 60.897 57.895 22.15 0.00 40.17 3.41
1190 1233 6.723977 TCCTTCATTGCAAACCCTAATAACTT 59.276 34.615 1.71 0.00 0.00 2.66
1470 1526 5.414360 TCTTTCTTCATCCTCTGAATGTCG 58.586 41.667 0.00 0.00 42.87 4.35
1814 2077 7.553334 TGTTGTACTCTGTACTGAACTTCTTT 58.447 34.615 3.89 0.00 0.00 2.52
2083 2448 3.706373 GGTCCGGAGCCAAGCTGA 61.706 66.667 23.28 0.00 39.88 4.26
2232 2597 4.360643 GCCAAGCAATCATGGGGA 57.639 55.556 0.00 0.00 37.19 4.81
2318 2683 2.942796 AAGCGGCCATCGACAGACA 61.943 57.895 2.24 0.00 42.43 3.41
2434 2799 3.646715 CCCCTCCAACCCGAGCAA 61.647 66.667 0.00 0.00 0.00 3.91


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.