Multiple sequence alignment - TraesCS2A01G201800

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS2A01G201800 chr2A 100.000 3516 0 0 1 3516 175466609 175470124 0.000000e+00 6493.0
1 TraesCS2A01G201800 chr2D 96.111 2674 63 14 431 3079 175330611 175333268 0.000000e+00 4324.0
2 TraesCS2A01G201800 chr2D 92.825 223 15 1 3295 3516 175333267 175333489 4.380000e-84 322.0
3 TraesCS2A01G201800 chr2B 95.676 2590 71 18 501 3079 223153617 223156176 0.000000e+00 4124.0
4 TraesCS2A01G201800 chr2B 90.566 212 11 2 3295 3497 223156175 223156386 4.470000e-69 272.0
5 TraesCS2A01G201800 chr2B 82.069 145 26 0 1097 1241 85177906 85177762 1.330000e-24 124.0
6 TraesCS2A01G201800 chr2B 79.755 163 33 0 1076 1238 85074001 85074163 6.170000e-23 119.0
7 TraesCS2A01G201800 chr2B 88.660 97 9 1 416 510 223152371 223152467 2.220000e-22 117.0
8 TraesCS2A01G201800 chr6D 86.238 2129 131 76 719 2753 60488234 60486174 0.000000e+00 2159.0
9 TraesCS2A01G201800 chr6D 91.855 221 16 2 3077 3296 18708846 18709065 1.230000e-79 307.0
10 TraesCS2A01G201800 chr6D 88.462 156 12 4 518 668 60488389 60488235 2.160000e-42 183.0
11 TraesCS2A01G201800 chr6D 94.737 38 2 0 3402 3439 5564843 5564880 3.790000e-05 60.2
12 TraesCS2A01G201800 chr6A 85.267 2138 129 79 719 2753 77100380 77098326 0.000000e+00 2032.0
13 TraesCS2A01G201800 chr6A 80.542 406 47 21 6 387 27080000 27080397 2.070000e-72 283.0
14 TraesCS2A01G201800 chr6A 87.261 157 13 4 518 668 77100536 77100381 4.670000e-39 172.0
15 TraesCS2A01G201800 chr6A 85.217 115 9 2 2897 3010 77098282 77098175 1.030000e-20 111.0
16 TraesCS2A01G201800 chr6B 84.188 2144 146 84 718 2753 134665082 134663024 0.000000e+00 1903.0
17 TraesCS2A01G201800 chr6B 81.899 337 48 9 6 331 590134952 590134618 4.470000e-69 272.0
18 TraesCS2A01G201800 chr6B 85.263 190 18 8 487 668 134665266 134665079 1.670000e-43 187.0
19 TraesCS2A01G201800 chr6B 91.111 45 3 1 2856 2900 134663064 134663021 3.790000e-05 60.2
20 TraesCS2A01G201800 chr1D 82.169 415 58 13 7 407 298072067 298072479 3.360000e-90 342.0
21 TraesCS2A01G201800 chr5D 81.731 416 55 14 6 407 454029917 454029509 9.410000e-86 327.0
22 TraesCS2A01G201800 chr5D 81.250 400 60 14 6 399 335757158 335756768 3.410000e-80 309.0
23 TraesCS2A01G201800 chr5D 91.818 220 16 2 3078 3296 421982585 421982367 4.410000e-79 305.0
24 TraesCS2A01G201800 chr5D 91.150 226 17 3 3072 3296 369716882 369716659 1.590000e-78 303.0
25 TraesCS2A01G201800 chrUn 90.123 243 20 4 3062 3302 103268613 103268373 2.640000e-81 313.0
26 TraesCS2A01G201800 chrUn 91.480 223 17 2 3075 3296 314207118 314206897 4.410000e-79 305.0
27 TraesCS2A01G201800 chrUn 94.595 37 2 0 3403 3439 53798774 53798810 1.360000e-04 58.4
28 TraesCS2A01G201800 chr1A 90.336 238 20 3 3076 3312 553906895 553907130 3.410000e-80 309.0
29 TraesCS2A01G201800 chr5A 91.855 221 17 1 3077 3296 74492989 74492769 1.230000e-79 307.0
30 TraesCS2A01G201800 chr5A 91.403 221 18 1 3077 3296 74491888 74491668 5.700000e-78 302.0
31 TraesCS2A01G201800 chr5A 85.185 243 31 4 1443 1684 317247919 317247681 9.750000e-61 244.0
32 TraesCS2A01G201800 chr5A 93.478 46 1 2 3395 3439 170088068 170088024 2.270000e-07 67.6
33 TraesCS2A01G201800 chr7B 90.708 226 18 3 3073 3297 117015214 117015437 7.380000e-77 298.0
34 TraesCS2A01G201800 chr3A 90.351 228 19 3 3071 3296 589907871 589907645 2.650000e-76 296.0
35 TraesCS2A01G201800 chr3A 81.111 360 58 9 51 405 170991591 170991945 2.670000e-71 279.0
36 TraesCS2A01G201800 chr3D 80.482 415 56 19 6 406 577612216 577611813 9.540000e-76 294.0
37 TraesCS2A01G201800 chr3D 85.837 233 30 2 1455 1684 39325676 39325444 9.750000e-61 244.0
38 TraesCS2A01G201800 chr3D 80.800 250 41 5 1429 1676 148224359 148224603 4.630000e-44 189.0
39 TraesCS2A01G201800 chr5B 80.605 397 58 13 6 387 340636666 340637058 4.440000e-74 289.0
40 TraesCS2A01G201800 chr5B 81.564 358 50 13 51 398 81626789 81627140 7.430000e-72 281.0
41 TraesCS2A01G201800 chr7A 79.524 420 63 19 7 406 710673188 710673604 9.610000e-71 278.0
42 TraesCS2A01G201800 chr7A 94.595 37 2 0 3403 3439 269966680 269966716 1.360000e-04 58.4
43 TraesCS2A01G201800 chr3B 84.979 233 32 2 1455 1684 62315122 62314890 2.110000e-57 233.0
44 TraesCS2A01G201800 chr3B 85.333 75 6 5 3403 3473 672774742 672774669 4.870000e-09 73.1
45 TraesCS2A01G201800 chr4B 81.301 246 37 8 1434 1676 380653779 380654018 1.290000e-44 191.0
46 TraesCS2A01G201800 chr4B 82.979 141 22 2 1094 1233 380653479 380653618 3.680000e-25 126.0
47 TraesCS2A01G201800 chr4D 82.979 141 22 2 1094 1233 304690192 304690331 3.680000e-25 126.0
48 TraesCS2A01G201800 chr4D 100.000 41 0 0 949 989 484166756 484166716 3.760000e-10 76.8
49 TraesCS2A01G201800 chr4D 94.595 37 2 0 3403 3439 144894990 144894954 1.360000e-04 58.4
50 TraesCS2A01G201800 chr4A 85.135 74 7 3 3403 3475 733665191 733665121 4.870000e-09 73.1


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS2A01G201800 chr2A 175466609 175470124 3515 False 6493.000000 6493 100.000 1 3516 1 chr2A.!!$F1 3515
1 TraesCS2A01G201800 chr2D 175330611 175333489 2878 False 2323.000000 4324 94.468 431 3516 2 chr2D.!!$F1 3085
2 TraesCS2A01G201800 chr2B 223152371 223156386 4015 False 1504.333333 4124 91.634 416 3497 3 chr2B.!!$F2 3081
3 TraesCS2A01G201800 chr6D 60486174 60488389 2215 True 1171.000000 2159 87.350 518 2753 2 chr6D.!!$R1 2235
4 TraesCS2A01G201800 chr6A 77098175 77100536 2361 True 771.666667 2032 85.915 518 3010 3 chr6A.!!$R1 2492
5 TraesCS2A01G201800 chr6B 134663021 134665266 2245 True 716.733333 1903 86.854 487 2900 3 chr6B.!!$R2 2413
6 TraesCS2A01G201800 chr5A 74491668 74492989 1321 True 304.500000 307 91.629 3077 3296 2 chr5A.!!$R3 219

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
47 48 0.036388 TTTTCTTCCGCGAGAGGCAT 60.036 50.0 8.23 0.0 43.84 4.40 F
139 140 0.106918 AAACCCGTGCTCCTGTTTCA 60.107 50.0 0.00 0.0 0.00 2.69 F
142 143 0.320374 CCCGTGCTCCTGTTTCAGTA 59.680 55.0 0.00 0.0 0.00 2.74 F
916 2103 0.615331 CTAGGCACCACAGTCCACAT 59.385 55.0 0.00 0.0 0.00 3.21 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1245 2463 0.039074 AAGCACGACGAGGTGAGAAG 60.039 55.000 13.34 0.00 40.38 2.85 R
1384 2630 0.792640 CAAGCACGACAGGATCACAC 59.207 55.000 0.00 0.00 0.00 3.82 R
1519 2771 1.214589 CTTCCAGTACCCCGACGTG 59.785 63.158 0.00 0.00 0.00 4.49 R
2530 3846 2.024117 TGCATGCGCATATGTGGTC 58.976 52.632 24.84 7.28 45.36 4.02 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
45 46 2.540145 TTTTTCTTCCGCGAGAGGC 58.460 52.632 8.23 0.00 38.69 4.70
46 47 0.250124 TTTTTCTTCCGCGAGAGGCA 60.250 50.000 8.23 0.00 43.84 4.75
47 48 0.036388 TTTTCTTCCGCGAGAGGCAT 60.036 50.000 8.23 0.00 43.84 4.40
48 49 0.740868 TTTCTTCCGCGAGAGGCATG 60.741 55.000 8.23 0.00 43.84 4.06
49 50 2.578163 TTCTTCCGCGAGAGGCATGG 62.578 60.000 8.23 0.00 43.84 3.66
50 51 3.376935 CTTCCGCGAGAGGCATGGT 62.377 63.158 8.23 0.00 43.84 3.55
51 52 2.859273 CTTCCGCGAGAGGCATGGTT 62.859 60.000 8.23 0.00 43.84 3.67
52 53 2.436646 CCGCGAGAGGCATGGTTT 60.437 61.111 8.23 0.00 43.84 3.27
53 54 2.040544 CCGCGAGAGGCATGGTTTT 61.041 57.895 8.23 0.00 43.84 2.43
54 55 1.135315 CGCGAGAGGCATGGTTTTG 59.865 57.895 0.00 0.00 43.84 2.44
55 56 1.153958 GCGAGAGGCATGGTTTTGC 60.154 57.895 0.00 0.00 42.87 3.68
56 57 1.589716 GCGAGAGGCATGGTTTTGCT 61.590 55.000 0.00 0.00 42.38 3.91
57 58 0.883833 CGAGAGGCATGGTTTTGCTT 59.116 50.000 0.00 0.00 42.38 3.91
58 59 1.135575 CGAGAGGCATGGTTTTGCTTC 60.136 52.381 0.00 0.80 46.00 3.86
59 60 1.203287 GAGAGGCATGGTTTTGCTTCC 59.797 52.381 5.12 0.00 46.61 3.46
60 61 0.109132 GAGGCATGGTTTTGCTTCCG 60.109 55.000 0.00 0.00 41.44 4.30
61 62 1.737735 GGCATGGTTTTGCTTCCGC 60.738 57.895 0.00 0.00 42.38 5.54
62 63 2.088178 GCATGGTTTTGCTTCCGCG 61.088 57.895 0.00 0.00 39.57 6.46
63 64 1.578926 CATGGTTTTGCTTCCGCGA 59.421 52.632 8.23 0.00 39.65 5.87
64 65 0.729140 CATGGTTTTGCTTCCGCGAC 60.729 55.000 8.23 0.00 39.65 5.19
65 66 1.169661 ATGGTTTTGCTTCCGCGACA 61.170 50.000 8.23 0.00 39.65 4.35
66 67 1.169661 TGGTTTTGCTTCCGCGACAT 61.170 50.000 8.23 0.00 39.65 3.06
67 68 0.729140 GGTTTTGCTTCCGCGACATG 60.729 55.000 8.23 0.00 39.65 3.21
68 69 1.081509 TTTTGCTTCCGCGACATGC 60.082 52.632 8.23 8.34 39.65 4.06
69 70 1.790090 TTTTGCTTCCGCGACATGCA 61.790 50.000 8.23 11.11 46.97 3.96
70 71 2.456594 TTTGCTTCCGCGACATGCAC 62.457 55.000 8.23 0.00 46.97 4.57
71 72 4.505217 GCTTCCGCGACATGCACG 62.505 66.667 8.23 8.25 46.97 5.34
72 73 3.853330 CTTCCGCGACATGCACGG 61.853 66.667 8.23 13.80 46.97 4.94
76 77 4.444024 CGCGACATGCACGGGTTG 62.444 66.667 17.20 1.73 46.97 3.77
77 78 3.353836 GCGACATGCACGGGTTGT 61.354 61.111 13.26 0.00 45.45 3.32
89 90 3.389925 ACGGGTTGTGATTTTACGAGA 57.610 42.857 0.00 0.00 0.00 4.04
90 91 3.323243 ACGGGTTGTGATTTTACGAGAG 58.677 45.455 0.00 0.00 0.00 3.20
91 92 2.093783 CGGGTTGTGATTTTACGAGAGC 59.906 50.000 0.00 0.00 0.00 4.09
92 93 2.418976 GGGTTGTGATTTTACGAGAGCC 59.581 50.000 0.00 0.00 0.00 4.70
93 94 3.071479 GGTTGTGATTTTACGAGAGCCA 58.929 45.455 0.00 0.00 0.00 4.75
94 95 3.120304 GGTTGTGATTTTACGAGAGCCAC 60.120 47.826 0.00 0.00 0.00 5.01
95 96 2.333926 TGTGATTTTACGAGAGCCACG 58.666 47.619 0.00 0.00 0.00 4.94
96 97 1.659098 GTGATTTTACGAGAGCCACGG 59.341 52.381 0.00 0.00 34.93 4.94
97 98 1.546923 TGATTTTACGAGAGCCACGGA 59.453 47.619 0.00 0.00 34.93 4.69
98 99 1.925185 GATTTTACGAGAGCCACGGAC 59.075 52.381 0.00 0.00 34.93 4.79
99 100 0.387622 TTTTACGAGAGCCACGGACG 60.388 55.000 0.00 0.00 34.93 4.79
100 101 1.518056 TTTACGAGAGCCACGGACGT 61.518 55.000 0.00 0.00 40.23 4.34
101 102 2.191354 TTACGAGAGCCACGGACGTG 62.191 60.000 17.21 17.21 45.02 4.49
107 108 4.681978 GCCACGGACGTGCCTCTT 62.682 66.667 18.57 0.00 44.16 2.85
108 109 2.030562 CCACGGACGTGCCTCTTT 59.969 61.111 18.57 0.00 44.16 2.52
109 110 2.027625 CCACGGACGTGCCTCTTTC 61.028 63.158 18.57 0.00 44.16 2.62
110 111 2.049433 ACGGACGTGCCTCTTTCG 60.049 61.111 0.00 0.00 0.00 3.46
111 112 2.257371 CGGACGTGCCTCTTTCGA 59.743 61.111 0.00 0.00 0.00 3.71
112 113 1.372499 CGGACGTGCCTCTTTCGAA 60.372 57.895 0.00 0.00 0.00 3.71
113 114 0.942410 CGGACGTGCCTCTTTCGAAA 60.942 55.000 10.71 10.71 0.00 3.46
114 115 1.223187 GGACGTGCCTCTTTCGAAAA 58.777 50.000 12.41 2.66 0.00 2.29
115 116 1.600485 GGACGTGCCTCTTTCGAAAAA 59.400 47.619 12.41 0.00 0.00 1.94
116 117 2.349532 GGACGTGCCTCTTTCGAAAAAG 60.350 50.000 12.41 8.23 42.77 2.27
117 118 1.602377 ACGTGCCTCTTTCGAAAAAGG 59.398 47.619 23.40 23.40 41.88 3.11
118 119 1.871039 CGTGCCTCTTTCGAAAAAGGA 59.129 47.619 30.17 14.91 41.88 3.36
119 120 2.289547 CGTGCCTCTTTCGAAAAAGGAA 59.710 45.455 30.17 19.95 41.88 3.36
120 121 3.242936 CGTGCCTCTTTCGAAAAAGGAAA 60.243 43.478 30.17 16.29 41.88 3.13
121 122 4.678622 GTGCCTCTTTCGAAAAAGGAAAA 58.321 39.130 30.17 14.00 41.88 2.29
122 123 5.106442 GTGCCTCTTTCGAAAAAGGAAAAA 58.894 37.500 30.17 11.75 41.88 1.94
123 124 5.005394 GTGCCTCTTTCGAAAAAGGAAAAAC 59.995 40.000 30.17 18.24 41.88 2.43
124 125 4.506654 GCCTCTTTCGAAAAAGGAAAAACC 59.493 41.667 30.17 10.41 41.88 3.27
125 126 5.047847 CCTCTTTCGAAAAAGGAAAAACCC 58.952 41.667 23.36 0.00 41.88 4.11
126 127 4.674475 TCTTTCGAAAAAGGAAAAACCCG 58.326 39.130 12.41 0.00 41.88 5.28
127 128 4.158209 TCTTTCGAAAAAGGAAAAACCCGT 59.842 37.500 12.41 0.00 41.88 5.28
128 129 3.423996 TCGAAAAAGGAAAAACCCGTG 57.576 42.857 0.00 0.00 40.05 4.94
129 130 1.855978 CGAAAAAGGAAAAACCCGTGC 59.144 47.619 0.00 0.00 40.05 5.34
130 131 2.480587 CGAAAAAGGAAAAACCCGTGCT 60.481 45.455 0.00 0.00 40.05 4.40
131 132 2.882927 AAAAGGAAAAACCCGTGCTC 57.117 45.000 0.00 0.00 40.05 4.26
132 133 1.037493 AAAGGAAAAACCCGTGCTCC 58.963 50.000 0.00 0.00 40.05 4.70
133 134 0.185175 AAGGAAAAACCCGTGCTCCT 59.815 50.000 0.00 0.00 38.17 3.69
134 135 0.537371 AGGAAAAACCCGTGCTCCTG 60.537 55.000 0.00 0.00 40.05 3.86
135 136 0.822121 GGAAAAACCCGTGCTCCTGT 60.822 55.000 0.00 0.00 0.00 4.00
136 137 1.029681 GAAAAACCCGTGCTCCTGTT 58.970 50.000 0.00 0.00 0.00 3.16
137 138 1.407618 GAAAAACCCGTGCTCCTGTTT 59.592 47.619 0.00 0.00 32.62 2.83
138 139 1.029681 AAAACCCGTGCTCCTGTTTC 58.970 50.000 0.00 0.00 31.01 2.78
139 140 0.106918 AAACCCGTGCTCCTGTTTCA 60.107 50.000 0.00 0.00 0.00 2.69
140 141 0.535102 AACCCGTGCTCCTGTTTCAG 60.535 55.000 0.00 0.00 0.00 3.02
141 142 1.071471 CCCGTGCTCCTGTTTCAGT 59.929 57.895 0.00 0.00 0.00 3.41
142 143 0.320374 CCCGTGCTCCTGTTTCAGTA 59.680 55.000 0.00 0.00 0.00 2.74
143 144 1.066143 CCCGTGCTCCTGTTTCAGTAT 60.066 52.381 0.00 0.00 0.00 2.12
144 145 2.615493 CCCGTGCTCCTGTTTCAGTATT 60.615 50.000 0.00 0.00 0.00 1.89
145 146 3.074412 CCGTGCTCCTGTTTCAGTATTT 58.926 45.455 0.00 0.00 0.00 1.40
146 147 3.125316 CCGTGCTCCTGTTTCAGTATTTC 59.875 47.826 0.00 0.00 0.00 2.17
147 148 3.181530 CGTGCTCCTGTTTCAGTATTTCG 60.182 47.826 0.00 0.00 0.00 3.46
148 149 3.746492 GTGCTCCTGTTTCAGTATTTCGT 59.254 43.478 0.00 0.00 0.00 3.85
149 150 3.994392 TGCTCCTGTTTCAGTATTTCGTC 59.006 43.478 0.00 0.00 0.00 4.20
150 151 3.371285 GCTCCTGTTTCAGTATTTCGTCC 59.629 47.826 0.00 0.00 0.00 4.79
151 152 3.581755 TCCTGTTTCAGTATTTCGTCCG 58.418 45.455 0.00 0.00 0.00 4.79
152 153 2.671396 CCTGTTTCAGTATTTCGTCCGG 59.329 50.000 0.00 0.00 0.00 5.14
153 154 3.323243 CTGTTTCAGTATTTCGTCCGGT 58.677 45.455 0.00 0.00 0.00 5.28
154 155 3.731089 TGTTTCAGTATTTCGTCCGGTT 58.269 40.909 0.00 0.00 0.00 4.44
155 156 4.128643 TGTTTCAGTATTTCGTCCGGTTT 58.871 39.130 0.00 0.00 0.00 3.27
156 157 4.575645 TGTTTCAGTATTTCGTCCGGTTTT 59.424 37.500 0.00 0.00 0.00 2.43
157 158 5.066246 TGTTTCAGTATTTCGTCCGGTTTTT 59.934 36.000 0.00 0.00 0.00 1.94
158 159 4.996062 TCAGTATTTCGTCCGGTTTTTC 57.004 40.909 0.00 0.00 0.00 2.29
159 160 4.378774 TCAGTATTTCGTCCGGTTTTTCA 58.621 39.130 0.00 0.00 0.00 2.69
160 161 4.998672 TCAGTATTTCGTCCGGTTTTTCAT 59.001 37.500 0.00 0.00 0.00 2.57
161 162 5.086058 CAGTATTTCGTCCGGTTTTTCATG 58.914 41.667 0.00 0.00 0.00 3.07
162 163 3.569250 ATTTCGTCCGGTTTTTCATGG 57.431 42.857 0.00 0.00 0.00 3.66
163 164 2.257691 TTCGTCCGGTTTTTCATGGA 57.742 45.000 0.00 0.00 0.00 3.41
164 165 2.257691 TCGTCCGGTTTTTCATGGAA 57.742 45.000 0.00 0.00 31.04 3.53
165 166 2.573369 TCGTCCGGTTTTTCATGGAAA 58.427 42.857 0.00 0.00 31.04 3.13
166 167 2.950309 TCGTCCGGTTTTTCATGGAAAA 59.050 40.909 7.87 7.87 39.36 2.29
167 168 3.380637 TCGTCCGGTTTTTCATGGAAAAA 59.619 39.130 13.56 11.45 45.38 1.94
193 194 7.474398 AGTTCATCAACATCTATCAACATCG 57.526 36.000 0.00 0.00 34.60 3.84
194 195 6.481313 AGTTCATCAACATCTATCAACATCGG 59.519 38.462 0.00 0.00 34.60 4.18
195 196 6.160576 TCATCAACATCTATCAACATCGGA 57.839 37.500 0.00 0.00 0.00 4.55
196 197 6.762333 TCATCAACATCTATCAACATCGGAT 58.238 36.000 0.00 0.00 0.00 4.18
197 198 6.647895 TCATCAACATCTATCAACATCGGATG 59.352 38.462 16.20 16.20 39.45 3.51
198 199 5.917462 TCAACATCTATCAACATCGGATGT 58.083 37.500 17.62 17.62 45.66 3.06
199 200 7.049799 TCAACATCTATCAACATCGGATGTA 57.950 36.000 22.91 9.86 43.82 2.29
200 201 7.147976 TCAACATCTATCAACATCGGATGTAG 58.852 38.462 22.91 16.26 43.82 2.74
201 202 6.656632 ACATCTATCAACATCGGATGTAGT 57.343 37.500 22.91 14.13 44.07 2.73
202 203 7.055667 ACATCTATCAACATCGGATGTAGTT 57.944 36.000 22.91 12.91 44.07 2.24
203 204 7.500992 ACATCTATCAACATCGGATGTAGTTT 58.499 34.615 22.91 11.34 44.07 2.66
204 205 7.987458 ACATCTATCAACATCGGATGTAGTTTT 59.013 33.333 22.91 5.29 44.07 2.43
205 206 7.770801 TCTATCAACATCGGATGTAGTTTTG 57.229 36.000 22.91 16.65 44.07 2.44
206 207 7.552459 TCTATCAACATCGGATGTAGTTTTGA 58.448 34.615 22.91 20.78 44.07 2.69
207 208 8.038351 TCTATCAACATCGGATGTAGTTTTGAA 58.962 33.333 22.91 11.94 44.07 2.69
208 209 6.480524 TCAACATCGGATGTAGTTTTGAAG 57.519 37.500 22.91 6.20 44.07 3.02
209 210 6.227522 TCAACATCGGATGTAGTTTTGAAGA 58.772 36.000 22.91 8.09 44.07 2.87
210 211 6.878923 TCAACATCGGATGTAGTTTTGAAGAT 59.121 34.615 22.91 1.15 44.07 2.40
211 212 6.910536 ACATCGGATGTAGTTTTGAAGATC 57.089 37.500 21.49 0.00 42.78 2.75
212 213 6.644347 ACATCGGATGTAGTTTTGAAGATCT 58.356 36.000 21.49 0.00 42.78 2.75
213 214 6.758886 ACATCGGATGTAGTTTTGAAGATCTC 59.241 38.462 21.49 0.00 42.78 2.75
214 215 5.340803 TCGGATGTAGTTTTGAAGATCTCG 58.659 41.667 0.00 0.00 0.00 4.04
215 216 5.124936 TCGGATGTAGTTTTGAAGATCTCGA 59.875 40.000 0.00 0.00 0.00 4.04
216 217 5.230306 CGGATGTAGTTTTGAAGATCTCGAC 59.770 44.000 0.00 0.00 0.00 4.20
217 218 5.230306 GGATGTAGTTTTGAAGATCTCGACG 59.770 44.000 0.00 0.00 0.00 5.12
218 219 3.918591 TGTAGTTTTGAAGATCTCGACGC 59.081 43.478 0.00 0.00 0.00 5.19
219 220 1.986378 AGTTTTGAAGATCTCGACGCG 59.014 47.619 3.53 3.53 0.00 6.01
220 221 1.983605 GTTTTGAAGATCTCGACGCGA 59.016 47.619 15.93 0.00 0.00 5.87
229 230 3.280211 TCGACGCGAGGAATCCAA 58.720 55.556 15.93 0.00 0.00 3.53
230 231 1.153901 TCGACGCGAGGAATCCAAC 60.154 57.895 15.93 0.00 0.00 3.77
231 232 2.505498 CGACGCGAGGAATCCAACG 61.505 63.158 15.93 12.84 0.00 4.10
232 233 2.125673 ACGCGAGGAATCCAACGG 60.126 61.111 15.93 11.24 0.00 4.44
233 234 2.125673 CGCGAGGAATCCAACGGT 60.126 61.111 17.17 0.00 0.00 4.83
234 235 2.452813 CGCGAGGAATCCAACGGTG 61.453 63.158 17.17 0.00 0.00 4.94
235 236 1.375523 GCGAGGAATCCAACGGTGT 60.376 57.895 17.17 0.00 0.00 4.16
236 237 0.953960 GCGAGGAATCCAACGGTGTT 60.954 55.000 17.17 0.00 0.00 3.32
237 238 1.076332 CGAGGAATCCAACGGTGTTC 58.924 55.000 0.61 0.00 0.00 3.18
238 239 1.076332 GAGGAATCCAACGGTGTTCG 58.924 55.000 0.61 0.00 45.88 3.95
239 240 0.682852 AGGAATCCAACGGTGTTCGA 59.317 50.000 0.61 0.00 42.43 3.71
240 241 1.076332 GGAATCCAACGGTGTTCGAG 58.924 55.000 0.00 0.00 42.43 4.04
241 242 1.337447 GGAATCCAACGGTGTTCGAGA 60.337 52.381 0.00 0.00 42.43 4.04
242 243 2.618053 GAATCCAACGGTGTTCGAGAT 58.382 47.619 0.00 0.00 42.43 2.75
243 244 2.762535 ATCCAACGGTGTTCGAGATT 57.237 45.000 0.00 0.00 42.43 2.40
244 245 2.536761 TCCAACGGTGTTCGAGATTT 57.463 45.000 0.00 0.00 42.43 2.17
245 246 2.139917 TCCAACGGTGTTCGAGATTTG 58.860 47.619 0.00 0.00 42.43 2.32
246 247 1.196808 CCAACGGTGTTCGAGATTTGG 59.803 52.381 0.00 0.00 42.43 3.28
247 248 2.139917 CAACGGTGTTCGAGATTTGGA 58.860 47.619 0.00 0.00 42.43 3.53
248 249 1.792006 ACGGTGTTCGAGATTTGGAC 58.208 50.000 0.00 0.00 42.43 4.02
249 250 1.069513 ACGGTGTTCGAGATTTGGACA 59.930 47.619 0.00 0.00 42.43 4.02
250 251 1.459592 CGGTGTTCGAGATTTGGACAC 59.540 52.381 5.86 5.86 42.43 3.67
251 252 2.489971 GGTGTTCGAGATTTGGACACA 58.510 47.619 14.31 0.00 0.00 3.72
252 253 2.223377 GGTGTTCGAGATTTGGACACAC 59.777 50.000 14.31 9.07 33.73 3.82
253 254 2.096909 GTGTTCGAGATTTGGACACACG 60.097 50.000 8.93 0.00 0.00 4.49
254 255 1.459592 GTTCGAGATTTGGACACACGG 59.540 52.381 0.00 0.00 0.00 4.94
255 256 0.677288 TCGAGATTTGGACACACGGT 59.323 50.000 0.00 0.00 0.00 4.83
256 257 1.069513 TCGAGATTTGGACACACGGTT 59.930 47.619 0.00 0.00 0.00 4.44
257 258 1.871039 CGAGATTTGGACACACGGTTT 59.129 47.619 0.00 0.00 0.00 3.27
258 259 3.061322 CGAGATTTGGACACACGGTTTA 58.939 45.455 0.00 0.00 0.00 2.01
259 260 3.495377 CGAGATTTGGACACACGGTTTAA 59.505 43.478 0.00 0.00 0.00 1.52
260 261 4.377022 CGAGATTTGGACACACGGTTTAAG 60.377 45.833 0.00 0.00 0.00 1.85
261 262 4.710324 AGATTTGGACACACGGTTTAAGA 58.290 39.130 0.00 0.00 0.00 2.10
262 263 4.755123 AGATTTGGACACACGGTTTAAGAG 59.245 41.667 0.00 0.00 0.00 2.85
263 264 3.823281 TTGGACACACGGTTTAAGAGA 57.177 42.857 0.00 0.00 0.00 3.10
264 265 4.345859 TTGGACACACGGTTTAAGAGAT 57.654 40.909 0.00 0.00 0.00 2.75
265 266 5.471556 TTGGACACACGGTTTAAGAGATA 57.528 39.130 0.00 0.00 0.00 1.98
266 267 5.471556 TGGACACACGGTTTAAGAGATAA 57.528 39.130 0.00 0.00 0.00 1.75
267 268 5.856156 TGGACACACGGTTTAAGAGATAAA 58.144 37.500 0.00 0.00 0.00 1.40
268 269 6.289834 TGGACACACGGTTTAAGAGATAAAA 58.710 36.000 0.00 0.00 35.33 1.52
269 270 6.203338 TGGACACACGGTTTAAGAGATAAAAC 59.797 38.462 0.00 0.00 37.75 2.43
315 316 7.486802 AAAAAGAAAAACTCTCCGATTACGA 57.513 32.000 0.00 0.00 35.85 3.43
316 317 6.463483 AAAGAAAAACTCTCCGATTACGAC 57.537 37.500 0.00 0.00 35.85 4.34
317 318 5.130292 AGAAAAACTCTCCGATTACGACA 57.870 39.130 0.00 0.00 42.66 4.35
318 319 5.535333 AGAAAAACTCTCCGATTACGACAA 58.465 37.500 0.00 0.00 42.66 3.18
319 320 5.987347 AGAAAAACTCTCCGATTACGACAAA 59.013 36.000 0.00 0.00 42.66 2.83
320 321 6.649557 AGAAAAACTCTCCGATTACGACAAAT 59.350 34.615 0.00 0.00 42.66 2.32
321 322 7.816031 AGAAAAACTCTCCGATTACGACAAATA 59.184 33.333 0.00 0.00 42.66 1.40
322 323 7.894376 AAAACTCTCCGATTACGACAAATAA 57.106 32.000 0.00 0.00 42.66 1.40
323 324 6.882458 AACTCTCCGATTACGACAAATAAC 57.118 37.500 0.00 0.00 42.66 1.89
324 325 5.957798 ACTCTCCGATTACGACAAATAACA 58.042 37.500 0.00 0.00 42.66 2.41
325 326 5.803967 ACTCTCCGATTACGACAAATAACAC 59.196 40.000 0.00 0.00 42.66 3.32
326 327 5.712004 TCTCCGATTACGACAAATAACACA 58.288 37.500 0.00 0.00 42.66 3.72
327 328 5.574055 TCTCCGATTACGACAAATAACACAC 59.426 40.000 0.00 0.00 42.66 3.82
328 329 5.228665 TCCGATTACGACAAATAACACACA 58.771 37.500 0.00 0.00 42.66 3.72
329 330 5.870433 TCCGATTACGACAAATAACACACAT 59.130 36.000 0.00 0.00 42.66 3.21
330 331 5.957220 CCGATTACGACAAATAACACACATG 59.043 40.000 0.00 0.00 42.66 3.21
331 332 5.447846 CGATTACGACAAATAACACACATGC 59.552 40.000 0.00 0.00 42.66 4.06
332 333 5.674933 TTACGACAAATAACACACATGCA 57.325 34.783 0.00 0.00 0.00 3.96
333 334 4.145876 ACGACAAATAACACACATGCAG 57.854 40.909 0.00 0.00 0.00 4.41
334 335 2.910482 CGACAAATAACACACATGCAGC 59.090 45.455 0.00 0.00 0.00 5.25
335 336 2.910482 GACAAATAACACACATGCAGCG 59.090 45.455 0.00 0.00 0.00 5.18
336 337 2.293122 ACAAATAACACACATGCAGCGT 59.707 40.909 0.00 0.00 0.00 5.07
337 338 2.617250 AATAACACACATGCAGCGTG 57.383 45.000 13.43 13.43 40.32 5.34
339 340 0.865111 TAACACACATGCAGCGTGTC 59.135 50.000 17.85 0.00 45.63 3.67
340 341 1.094650 AACACACATGCAGCGTGTCA 61.095 50.000 17.85 0.00 45.63 3.58
341 342 0.886043 ACACACATGCAGCGTGTCAT 60.886 50.000 17.85 6.25 45.63 3.06
342 343 1.077915 CACACATGCAGCGTGTCATA 58.922 50.000 17.85 0.00 45.63 2.15
343 344 1.667212 CACACATGCAGCGTGTCATAT 59.333 47.619 17.85 1.09 45.63 1.78
344 345 1.667212 ACACATGCAGCGTGTCATATG 59.333 47.619 17.85 8.80 44.11 1.78
345 346 1.667212 CACATGCAGCGTGTCATATGT 59.333 47.619 17.85 1.72 30.47 2.29
346 347 1.935873 ACATGCAGCGTGTCATATGTC 59.064 47.619 14.95 0.00 0.00 3.06
347 348 1.071041 CATGCAGCGTGTCATATGTCG 60.071 52.381 6.43 7.78 0.00 4.35
352 353 1.129326 GCGTGTCATATGTCGCTACC 58.871 55.000 23.55 7.33 44.28 3.18
353 354 1.269102 GCGTGTCATATGTCGCTACCT 60.269 52.381 23.55 0.00 44.28 3.08
354 355 2.031420 GCGTGTCATATGTCGCTACCTA 60.031 50.000 23.55 0.00 44.28 3.08
355 356 3.811514 CGTGTCATATGTCGCTACCTAG 58.188 50.000 10.94 0.00 0.00 3.02
356 357 3.497262 CGTGTCATATGTCGCTACCTAGA 59.503 47.826 10.94 0.00 0.00 2.43
357 358 4.024302 CGTGTCATATGTCGCTACCTAGAA 60.024 45.833 10.94 0.00 0.00 2.10
358 359 5.505159 CGTGTCATATGTCGCTACCTAGAAA 60.505 44.000 10.94 0.00 0.00 2.52
359 360 5.915758 GTGTCATATGTCGCTACCTAGAAAG 59.084 44.000 1.90 0.00 0.00 2.62
360 361 5.826208 TGTCATATGTCGCTACCTAGAAAGA 59.174 40.000 1.90 0.00 0.00 2.52
361 362 6.490381 TGTCATATGTCGCTACCTAGAAAGAT 59.510 38.462 1.90 0.00 0.00 2.40
362 363 6.804295 GTCATATGTCGCTACCTAGAAAGATG 59.196 42.308 1.90 0.00 0.00 2.90
363 364 6.715264 TCATATGTCGCTACCTAGAAAGATGA 59.285 38.462 1.90 0.00 31.98 2.92
364 365 4.902443 TGTCGCTACCTAGAAAGATGAG 57.098 45.455 0.00 0.00 0.00 2.90
365 366 4.524053 TGTCGCTACCTAGAAAGATGAGA 58.476 43.478 0.00 0.00 0.00 3.27
366 367 4.576873 TGTCGCTACCTAGAAAGATGAGAG 59.423 45.833 0.00 0.00 0.00 3.20
367 368 4.577283 GTCGCTACCTAGAAAGATGAGAGT 59.423 45.833 0.00 0.00 0.00 3.24
368 369 4.576873 TCGCTACCTAGAAAGATGAGAGTG 59.423 45.833 0.00 0.00 0.00 3.51
369 370 4.576873 CGCTACCTAGAAAGATGAGAGTGA 59.423 45.833 0.00 0.00 0.00 3.41
370 371 5.240623 CGCTACCTAGAAAGATGAGAGTGAT 59.759 44.000 0.00 0.00 0.00 3.06
371 372 6.567701 CGCTACCTAGAAAGATGAGAGTGATC 60.568 46.154 0.00 0.00 0.00 2.92
372 373 6.490040 GCTACCTAGAAAGATGAGAGTGATCT 59.510 42.308 0.00 0.00 0.00 2.75
373 374 7.014230 GCTACCTAGAAAGATGAGAGTGATCTT 59.986 40.741 0.00 0.00 41.07 2.40
375 376 7.555087 ACCTAGAAAGATGAGAGTGATCTTTG 58.445 38.462 11.47 2.00 45.82 2.77
376 377 6.479660 CCTAGAAAGATGAGAGTGATCTTTGC 59.520 42.308 11.47 5.12 45.82 3.68
377 378 5.802465 AGAAAGATGAGAGTGATCTTTGCA 58.198 37.500 11.47 0.00 45.82 4.08
378 379 6.236409 AGAAAGATGAGAGTGATCTTTGCAA 58.764 36.000 11.47 0.00 45.82 4.08
379 380 5.876612 AAGATGAGAGTGATCTTTGCAAC 57.123 39.130 0.00 0.00 36.91 4.17
380 381 3.931468 AGATGAGAGTGATCTTTGCAACG 59.069 43.478 0.00 0.00 0.00 4.10
381 382 3.385193 TGAGAGTGATCTTTGCAACGA 57.615 42.857 8.20 8.20 0.00 3.85
382 383 3.727726 TGAGAGTGATCTTTGCAACGAA 58.272 40.909 9.92 0.00 0.00 3.85
383 384 4.318332 TGAGAGTGATCTTTGCAACGAAT 58.682 39.130 9.92 0.00 0.00 3.34
384 385 5.478407 TGAGAGTGATCTTTGCAACGAATA 58.522 37.500 9.92 0.00 0.00 1.75
385 386 5.348724 TGAGAGTGATCTTTGCAACGAATAC 59.651 40.000 9.92 11.32 0.00 1.89
386 387 5.482908 AGAGTGATCTTTGCAACGAATACT 58.517 37.500 18.83 18.83 0.00 2.12
387 388 5.934625 AGAGTGATCTTTGCAACGAATACTT 59.065 36.000 19.39 11.17 0.00 2.24
388 389 6.091441 AGAGTGATCTTTGCAACGAATACTTC 59.909 38.462 19.39 10.26 0.00 3.01
389 390 5.934625 AGTGATCTTTGCAACGAATACTTCT 59.065 36.000 9.92 1.24 0.00 2.85
390 391 6.091441 AGTGATCTTTGCAACGAATACTTCTC 59.909 38.462 9.92 4.01 0.00 2.87
391 392 4.903638 TCTTTGCAACGAATACTTCTCG 57.096 40.909 2.67 0.00 42.06 4.04
392 393 4.552355 TCTTTGCAACGAATACTTCTCGA 58.448 39.130 2.67 0.00 39.60 4.04
393 394 4.384846 TCTTTGCAACGAATACTTCTCGAC 59.615 41.667 2.67 0.00 39.60 4.20
394 395 3.570926 TGCAACGAATACTTCTCGACT 57.429 42.857 0.00 0.00 39.60 4.18
395 396 4.690184 TGCAACGAATACTTCTCGACTA 57.310 40.909 0.00 0.00 39.60 2.59
396 397 4.659088 TGCAACGAATACTTCTCGACTAG 58.341 43.478 0.00 0.00 39.60 2.57
397 398 4.155462 TGCAACGAATACTTCTCGACTAGT 59.845 41.667 0.00 0.00 39.60 2.57
398 399 5.094134 GCAACGAATACTTCTCGACTAGTT 58.906 41.667 0.00 0.00 39.60 2.24
399 400 5.003590 GCAACGAATACTTCTCGACTAGTTG 59.996 44.000 3.44 3.44 39.60 3.16
400 401 6.312487 CAACGAATACTTCTCGACTAGTTGA 58.688 40.000 12.39 12.39 39.60 3.18
401 402 6.492007 ACGAATACTTCTCGACTAGTTGAA 57.508 37.500 13.88 9.74 39.60 2.69
402 403 7.086230 ACGAATACTTCTCGACTAGTTGAAT 57.914 36.000 13.88 1.71 39.60 2.57
403 404 7.536855 ACGAATACTTCTCGACTAGTTGAATT 58.463 34.615 13.88 9.90 39.60 2.17
404 405 7.697291 ACGAATACTTCTCGACTAGTTGAATTC 59.303 37.037 13.88 16.07 39.60 2.17
405 406 7.097369 CGAATACTTCTCGACTAGTTGAATTCG 60.097 40.741 26.83 26.83 38.61 3.34
406 407 4.734917 ACTTCTCGACTAGTTGAATTCGG 58.265 43.478 13.88 2.49 32.28 4.30
407 408 4.458295 ACTTCTCGACTAGTTGAATTCGGA 59.542 41.667 13.88 4.79 32.28 4.55
408 409 5.048224 ACTTCTCGACTAGTTGAATTCGGAA 60.048 40.000 13.88 11.61 32.28 4.30
409 410 5.381174 TCTCGACTAGTTGAATTCGGAAA 57.619 39.130 13.88 0.00 32.28 3.13
410 411 5.159209 TCTCGACTAGTTGAATTCGGAAAC 58.841 41.667 13.88 0.06 32.28 2.78
423 424 1.079612 GGAAACGAACCGGACCGAT 60.080 57.895 17.49 3.19 0.00 4.18
448 449 1.591703 CTGGTCGTGCCTTGAGCTA 59.408 57.895 0.00 0.00 44.23 3.32
458 459 2.224499 TGCCTTGAGCTATGTCACACAA 60.224 45.455 0.00 0.00 44.23 3.33
752 1927 3.039588 CCACGGTTTCACGGTCGG 61.040 66.667 0.00 0.00 38.39 4.79
863 2047 1.003233 ACAAATCCCAGTCCGTTCCTC 59.997 52.381 0.00 0.00 0.00 3.71
916 2103 0.615331 CTAGGCACCACAGTCCACAT 59.385 55.000 0.00 0.00 0.00 3.21
1242 2460 2.897350 GAGCTGCCCGGTATGTGC 60.897 66.667 0.00 0.00 0.00 4.57
1244 2462 2.516930 GCTGCCCGGTATGTGCAT 60.517 61.111 0.00 0.00 33.97 3.96
1245 2463 2.546494 GCTGCCCGGTATGTGCATC 61.546 63.158 0.00 0.00 33.97 3.91
1246 2464 1.146930 CTGCCCGGTATGTGCATCT 59.853 57.895 0.00 0.00 33.97 2.90
1384 2630 8.437360 ACACATGTATGTAGATGGTTTATGTG 57.563 34.615 0.00 0.00 44.91 3.21
1787 3077 1.807886 CGCGGTCTAGCAGTAACCT 59.192 57.895 0.00 0.00 36.85 3.50
1858 3156 6.902341 TGAAGTTAATTAGTGTACGTCGTCT 58.098 36.000 0.00 0.00 0.00 4.18
2055 3359 1.134580 CGATTCACTGCTCCATCACCT 60.135 52.381 0.00 0.00 0.00 4.00
2248 3552 3.622060 AACCGTTGGCATCCTCCCG 62.622 63.158 0.00 0.00 0.00 5.14
2383 3693 6.888088 CCATGCCTCCATTTATGAATCATCTA 59.112 38.462 0.00 0.00 0.00 1.98
2429 3739 1.153309 CAGCATGTCATCCTCGGCA 60.153 57.895 0.00 0.00 0.00 5.69
2530 3846 7.286087 TGGAATCCCTGAACAAATGATATGAAG 59.714 37.037 0.00 0.00 0.00 3.02
2661 4019 6.373186 CATTGCATGGATATATGTGGCTAG 57.627 41.667 0.00 0.00 0.00 3.42
2662 4020 3.877559 TGCATGGATATATGTGGCTAGC 58.122 45.455 6.04 6.04 0.00 3.42
2663 4021 3.520721 TGCATGGATATATGTGGCTAGCT 59.479 43.478 15.72 0.00 0.00 3.32
2664 4022 3.875727 GCATGGATATATGTGGCTAGCTG 59.124 47.826 15.72 0.86 0.00 4.24
2665 4023 4.624843 GCATGGATATATGTGGCTAGCTGT 60.625 45.833 15.72 0.93 0.00 4.40
2678 4036 2.945008 GCTAGCTGTATTGCACCATGAA 59.055 45.455 7.70 0.00 34.99 2.57
2854 4241 8.122472 AGTATAATTTTTGGCCATATACCTGC 57.878 34.615 21.81 5.61 32.43 4.85
2855 4242 7.950124 AGTATAATTTTTGGCCATATACCTGCT 59.050 33.333 21.81 7.91 32.43 4.24
2878 4265 6.857451 GCTAGCTAGGAGTATTTTCGAAGTAC 59.143 42.308 22.10 12.36 0.00 2.73
2902 4289 5.779806 AAACGAGTCACAACATAGTATGC 57.220 39.130 10.16 0.00 0.00 3.14
3058 4446 6.946229 TCTGACTCTTTGCGAAGTAAATAC 57.054 37.500 13.49 2.37 42.00 1.89
3098 4486 7.129425 ACAATACTCCCTCTCTCTCAGTTTAT 58.871 38.462 0.00 0.00 0.00 1.40
3102 4490 5.433712 ACTCCCTCTCTCTCAGTTTATAGGA 59.566 44.000 0.00 0.00 0.00 2.94
3103 4491 5.697067 TCCCTCTCTCTCAGTTTATAGGAC 58.303 45.833 0.00 0.00 0.00 3.85
3120 4508 3.095911 CGTGCGCGTACTCCTAGA 58.904 61.111 24.56 0.00 0.00 2.43
3133 4521 6.439599 CGTACTCCTAGATCGTCAATTTGAT 58.560 40.000 1.78 0.00 0.00 2.57
3138 4526 5.748630 TCCTAGATCGTCAATTTGATCAACG 59.251 40.000 7.89 9.13 42.72 4.10
3146 4534 8.019769 TCGTCAATTTGATCAACGTAATACAA 57.980 30.769 7.89 0.00 35.04 2.41
3291 4680 4.124970 GACTTGTAAACTGAAACGGAGGT 58.875 43.478 0.00 0.00 0.00 3.85
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
27 28 0.250124 TGCCTCTCGCGGAAGAAAAA 60.250 50.000 6.13 0.00 42.08 1.94
28 29 0.036388 ATGCCTCTCGCGGAAGAAAA 60.036 50.000 6.13 0.00 42.08 2.29
29 30 0.740868 CATGCCTCTCGCGGAAGAAA 60.741 55.000 6.13 0.00 42.08 2.52
30 31 1.153568 CATGCCTCTCGCGGAAGAA 60.154 57.895 6.13 0.00 42.08 2.52
31 32 2.496341 CATGCCTCTCGCGGAAGA 59.504 61.111 6.13 0.90 42.08 2.87
32 33 2.587194 CCATGCCTCTCGCGGAAG 60.587 66.667 6.13 3.71 42.08 3.46
33 34 2.463589 AAACCATGCCTCTCGCGGAA 62.464 55.000 6.13 0.00 42.08 4.30
34 35 2.463589 AAAACCATGCCTCTCGCGGA 62.464 55.000 6.13 1.01 42.08 5.54
35 36 2.040544 AAAACCATGCCTCTCGCGG 61.041 57.895 6.13 0.00 42.08 6.46
36 37 1.135315 CAAAACCATGCCTCTCGCG 59.865 57.895 0.00 0.00 42.08 5.87
37 38 1.153958 GCAAAACCATGCCTCTCGC 60.154 57.895 0.00 0.00 40.49 5.03
59 60 4.444024 CAACCCGTGCATGTCGCG 62.444 66.667 0.00 0.00 46.97 5.87
60 61 3.353836 ACAACCCGTGCATGTCGC 61.354 61.111 4.96 0.00 42.89 5.19
61 62 1.298157 ATCACAACCCGTGCATGTCG 61.298 55.000 4.96 0.00 45.92 4.35
62 63 0.881118 AATCACAACCCGTGCATGTC 59.119 50.000 4.96 0.00 45.92 3.06
63 64 1.327303 AAATCACAACCCGTGCATGT 58.673 45.000 4.96 0.00 45.92 3.21
64 65 2.437200 AAAATCACAACCCGTGCATG 57.563 45.000 0.00 0.00 45.92 4.06
65 66 2.095466 CGTAAAATCACAACCCGTGCAT 60.095 45.455 0.00 0.00 45.92 3.96
66 67 1.264557 CGTAAAATCACAACCCGTGCA 59.735 47.619 0.00 0.00 45.92 4.57
67 68 1.532007 TCGTAAAATCACAACCCGTGC 59.468 47.619 0.00 0.00 45.92 5.34
69 70 3.323243 CTCTCGTAAAATCACAACCCGT 58.677 45.455 0.00 0.00 0.00 5.28
70 71 2.093783 GCTCTCGTAAAATCACAACCCG 59.906 50.000 0.00 0.00 0.00 5.28
71 72 2.418976 GGCTCTCGTAAAATCACAACCC 59.581 50.000 0.00 0.00 0.00 4.11
72 73 3.071479 TGGCTCTCGTAAAATCACAACC 58.929 45.455 0.00 0.00 0.00 3.77
73 74 3.423123 CGTGGCTCTCGTAAAATCACAAC 60.423 47.826 0.00 0.00 0.00 3.32
74 75 2.734606 CGTGGCTCTCGTAAAATCACAA 59.265 45.455 0.00 0.00 0.00 3.33
75 76 2.333926 CGTGGCTCTCGTAAAATCACA 58.666 47.619 0.00 0.00 0.00 3.58
76 77 1.659098 CCGTGGCTCTCGTAAAATCAC 59.341 52.381 0.00 0.00 0.00 3.06
77 78 1.546923 TCCGTGGCTCTCGTAAAATCA 59.453 47.619 0.00 0.00 0.00 2.57
78 79 1.925185 GTCCGTGGCTCTCGTAAAATC 59.075 52.381 0.00 0.00 0.00 2.17
79 80 1.734707 CGTCCGTGGCTCTCGTAAAAT 60.735 52.381 0.00 0.00 0.00 1.82
80 81 0.387622 CGTCCGTGGCTCTCGTAAAA 60.388 55.000 0.00 0.00 0.00 1.52
81 82 1.210931 CGTCCGTGGCTCTCGTAAA 59.789 57.895 0.00 0.00 0.00 2.01
82 83 1.968017 ACGTCCGTGGCTCTCGTAA 60.968 57.895 0.00 0.00 33.04 3.18
83 84 2.359107 ACGTCCGTGGCTCTCGTA 60.359 61.111 0.00 0.00 33.04 3.43
84 85 4.039357 CACGTCCGTGGCTCTCGT 62.039 66.667 11.83 0.00 42.00 4.18
91 92 2.027625 GAAAGAGGCACGTCCGTGG 61.028 63.158 20.09 3.84 45.49 4.94
92 93 2.742710 TCGAAAGAGGCACGTCCGTG 62.743 60.000 15.09 15.09 41.44 4.94
93 94 2.049433 CGAAAGAGGCACGTCCGT 60.049 61.111 0.00 0.00 40.77 4.69
94 95 0.942410 TTTCGAAAGAGGCACGTCCG 60.942 55.000 6.47 0.00 43.69 4.79
95 96 1.223187 TTTTCGAAAGAGGCACGTCC 58.777 50.000 10.98 0.00 43.69 4.79
96 97 2.349532 CCTTTTTCGAAAGAGGCACGTC 60.350 50.000 28.46 0.00 43.69 4.34
97 98 1.602377 CCTTTTTCGAAAGAGGCACGT 59.398 47.619 28.46 0.00 43.69 4.49
98 99 1.871039 TCCTTTTTCGAAAGAGGCACG 59.129 47.619 32.47 16.11 43.69 5.34
99 100 3.982576 TTCCTTTTTCGAAAGAGGCAC 57.017 42.857 32.47 0.00 43.69 5.01
100 101 4.993029 TTTTCCTTTTTCGAAAGAGGCA 57.007 36.364 32.47 24.19 43.69 4.75
101 102 4.506654 GGTTTTTCCTTTTTCGAAAGAGGC 59.493 41.667 32.47 21.61 43.69 4.70
102 103 5.047847 GGGTTTTTCCTTTTTCGAAAGAGG 58.952 41.667 31.82 31.82 40.61 3.69
103 104 4.738252 CGGGTTTTTCCTTTTTCGAAAGAG 59.262 41.667 18.88 18.88 37.68 2.85
104 105 4.158209 ACGGGTTTTTCCTTTTTCGAAAGA 59.842 37.500 10.98 5.78 35.55 2.52
105 106 4.266739 CACGGGTTTTTCCTTTTTCGAAAG 59.733 41.667 10.98 0.00 36.25 2.62
106 107 4.174762 CACGGGTTTTTCCTTTTTCGAAA 58.825 39.130 6.47 6.47 36.25 3.46
107 108 3.771798 CACGGGTTTTTCCTTTTTCGAA 58.228 40.909 0.00 0.00 36.25 3.71
108 109 2.479901 GCACGGGTTTTTCCTTTTTCGA 60.480 45.455 0.00 0.00 36.25 3.71
109 110 1.855978 GCACGGGTTTTTCCTTTTTCG 59.144 47.619 0.00 0.00 36.25 3.46
110 111 3.120792 GAGCACGGGTTTTTCCTTTTTC 58.879 45.455 0.00 0.00 36.25 2.29
111 112 2.159014 GGAGCACGGGTTTTTCCTTTTT 60.159 45.455 0.00 0.00 36.25 1.94
112 113 1.411246 GGAGCACGGGTTTTTCCTTTT 59.589 47.619 0.00 0.00 36.25 2.27
113 114 1.037493 GGAGCACGGGTTTTTCCTTT 58.963 50.000 0.00 0.00 36.25 3.11
114 115 0.185175 AGGAGCACGGGTTTTTCCTT 59.815 50.000 0.00 0.00 34.71 3.36
115 116 0.537371 CAGGAGCACGGGTTTTTCCT 60.537 55.000 0.00 0.00 38.79 3.36
116 117 0.822121 ACAGGAGCACGGGTTTTTCC 60.822 55.000 0.00 0.00 0.00 3.13
117 118 1.029681 AACAGGAGCACGGGTTTTTC 58.970 50.000 0.00 0.00 0.00 2.29
118 119 1.407618 GAAACAGGAGCACGGGTTTTT 59.592 47.619 3.98 0.00 33.59 1.94
119 120 1.029681 GAAACAGGAGCACGGGTTTT 58.970 50.000 3.98 0.00 33.59 2.43
120 121 0.106918 TGAAACAGGAGCACGGGTTT 60.107 50.000 2.39 2.39 35.26 3.27
121 122 0.535102 CTGAAACAGGAGCACGGGTT 60.535 55.000 0.00 0.00 0.00 4.11
122 123 1.071471 CTGAAACAGGAGCACGGGT 59.929 57.895 0.00 0.00 0.00 5.28
123 124 0.320374 TACTGAAACAGGAGCACGGG 59.680 55.000 0.00 0.00 35.51 5.28
124 125 2.386661 ATACTGAAACAGGAGCACGG 57.613 50.000 0.00 0.00 35.51 4.94
125 126 3.181530 CGAAATACTGAAACAGGAGCACG 60.182 47.826 0.00 0.00 35.51 5.34
126 127 3.746492 ACGAAATACTGAAACAGGAGCAC 59.254 43.478 0.00 0.00 35.51 4.40
127 128 3.994392 GACGAAATACTGAAACAGGAGCA 59.006 43.478 0.00 0.00 35.51 4.26
128 129 3.371285 GGACGAAATACTGAAACAGGAGC 59.629 47.826 0.00 0.00 35.51 4.70
129 130 3.612860 CGGACGAAATACTGAAACAGGAG 59.387 47.826 0.00 0.00 35.51 3.69
130 131 3.581755 CGGACGAAATACTGAAACAGGA 58.418 45.455 0.00 0.00 35.51 3.86
131 132 2.671396 CCGGACGAAATACTGAAACAGG 59.329 50.000 0.00 0.00 35.51 4.00
132 133 3.323243 ACCGGACGAAATACTGAAACAG 58.677 45.455 9.46 0.00 37.52 3.16
133 134 3.389925 ACCGGACGAAATACTGAAACA 57.610 42.857 9.46 0.00 0.00 2.83
134 135 4.737353 AAACCGGACGAAATACTGAAAC 57.263 40.909 9.46 0.00 0.00 2.78
135 136 5.296283 TGAAAAACCGGACGAAATACTGAAA 59.704 36.000 9.46 0.00 0.00 2.69
136 137 4.815308 TGAAAAACCGGACGAAATACTGAA 59.185 37.500 9.46 0.00 0.00 3.02
137 138 4.378774 TGAAAAACCGGACGAAATACTGA 58.621 39.130 9.46 0.00 0.00 3.41
138 139 4.735662 TGAAAAACCGGACGAAATACTG 57.264 40.909 9.46 0.00 0.00 2.74
139 140 4.155280 CCATGAAAAACCGGACGAAATACT 59.845 41.667 9.46 0.00 0.00 2.12
140 141 4.154556 TCCATGAAAAACCGGACGAAATAC 59.845 41.667 9.46 0.00 0.00 1.89
141 142 4.325119 TCCATGAAAAACCGGACGAAATA 58.675 39.130 9.46 0.00 0.00 1.40
142 143 3.150767 TCCATGAAAAACCGGACGAAAT 58.849 40.909 9.46 0.00 0.00 2.17
143 144 2.573369 TCCATGAAAAACCGGACGAAA 58.427 42.857 9.46 0.00 0.00 3.46
144 145 2.257691 TCCATGAAAAACCGGACGAA 57.742 45.000 9.46 0.00 0.00 3.85
145 146 2.257691 TTCCATGAAAAACCGGACGA 57.742 45.000 9.46 0.00 0.00 4.20
146 147 3.357166 TTTTCCATGAAAAACCGGACG 57.643 42.857 9.46 0.00 38.37 4.79
167 168 8.393366 CGATGTTGATAGATGTTGATGAACTTT 58.607 33.333 0.00 0.00 32.79 2.66
168 169 7.011763 CCGATGTTGATAGATGTTGATGAACTT 59.988 37.037 0.00 0.00 32.79 2.66
169 170 6.481313 CCGATGTTGATAGATGTTGATGAACT 59.519 38.462 0.00 0.00 32.79 3.01
170 171 6.479990 TCCGATGTTGATAGATGTTGATGAAC 59.520 38.462 0.00 0.00 0.00 3.18
171 172 6.581712 TCCGATGTTGATAGATGTTGATGAA 58.418 36.000 0.00 0.00 0.00 2.57
172 173 6.160576 TCCGATGTTGATAGATGTTGATGA 57.839 37.500 0.00 0.00 0.00 2.92
173 174 6.426025 ACATCCGATGTTGATAGATGTTGATG 59.574 38.462 8.28 0.00 43.75 3.07
174 175 6.528321 ACATCCGATGTTGATAGATGTTGAT 58.472 36.000 8.28 0.00 43.75 2.57
175 176 5.917462 ACATCCGATGTTGATAGATGTTGA 58.083 37.500 8.28 0.00 43.75 3.18
176 177 6.925718 ACTACATCCGATGTTGATAGATGTTG 59.074 38.462 24.08 9.59 43.75 3.33
177 178 7.055667 ACTACATCCGATGTTGATAGATGTT 57.944 36.000 24.08 2.34 43.75 2.71
178 179 6.656632 ACTACATCCGATGTTGATAGATGT 57.343 37.500 24.08 8.77 46.79 3.06
179 180 7.953158 AAACTACATCCGATGTTGATAGATG 57.047 36.000 24.08 0.00 41.63 2.90
180 181 8.204160 TCAAAACTACATCCGATGTTGATAGAT 58.796 33.333 24.08 7.69 41.63 1.98
181 182 7.552459 TCAAAACTACATCCGATGTTGATAGA 58.448 34.615 24.08 13.71 41.63 1.98
182 183 7.770801 TCAAAACTACATCCGATGTTGATAG 57.229 36.000 24.08 15.75 41.63 2.08
183 184 8.038351 TCTTCAAAACTACATCCGATGTTGATA 58.962 33.333 24.08 9.52 41.63 2.15
184 185 6.878923 TCTTCAAAACTACATCCGATGTTGAT 59.121 34.615 24.08 13.24 41.63 2.57
185 186 6.227522 TCTTCAAAACTACATCCGATGTTGA 58.772 36.000 24.08 16.21 41.63 3.18
186 187 6.480524 TCTTCAAAACTACATCCGATGTTG 57.519 37.500 18.97 18.41 41.63 3.33
187 188 7.106239 AGATCTTCAAAACTACATCCGATGTT 58.894 34.615 18.97 0.00 41.63 2.71
188 189 6.644347 AGATCTTCAAAACTACATCCGATGT 58.356 36.000 17.92 17.92 46.92 3.06
189 190 6.074623 CGAGATCTTCAAAACTACATCCGATG 60.075 42.308 6.84 6.84 0.00 3.84
190 191 5.980116 CGAGATCTTCAAAACTACATCCGAT 59.020 40.000 0.00 0.00 0.00 4.18
191 192 5.124936 TCGAGATCTTCAAAACTACATCCGA 59.875 40.000 0.00 0.00 0.00 4.55
192 193 5.230306 GTCGAGATCTTCAAAACTACATCCG 59.770 44.000 0.00 0.00 0.00 4.18
193 194 5.230306 CGTCGAGATCTTCAAAACTACATCC 59.770 44.000 0.00 0.00 0.00 3.51
194 195 5.275974 GCGTCGAGATCTTCAAAACTACATC 60.276 44.000 0.00 0.00 0.00 3.06
195 196 4.563184 GCGTCGAGATCTTCAAAACTACAT 59.437 41.667 0.00 0.00 0.00 2.29
196 197 3.918591 GCGTCGAGATCTTCAAAACTACA 59.081 43.478 0.00 0.00 0.00 2.74
197 198 3.001954 CGCGTCGAGATCTTCAAAACTAC 60.002 47.826 0.00 0.00 0.00 2.73
198 199 3.120095 TCGCGTCGAGATCTTCAAAACTA 60.120 43.478 5.77 0.00 0.00 2.24
199 200 1.986378 CGCGTCGAGATCTTCAAAACT 59.014 47.619 0.00 0.00 0.00 2.66
200 201 1.983605 TCGCGTCGAGATCTTCAAAAC 59.016 47.619 5.77 0.00 0.00 2.43
201 202 2.341318 TCGCGTCGAGATCTTCAAAA 57.659 45.000 5.77 0.00 0.00 2.44
212 213 1.153901 GTTGGATTCCTCGCGTCGA 60.154 57.895 5.77 0.00 0.00 4.20
213 214 2.505498 CGTTGGATTCCTCGCGTCG 61.505 63.158 5.77 0.00 0.00 5.12
214 215 2.165301 CCGTTGGATTCCTCGCGTC 61.165 63.158 5.77 0.00 0.00 5.19
215 216 2.125673 CCGTTGGATTCCTCGCGT 60.126 61.111 5.77 0.00 0.00 6.01
216 217 2.125673 ACCGTTGGATTCCTCGCG 60.126 61.111 0.00 0.00 0.00 5.87
217 218 0.953960 AACACCGTTGGATTCCTCGC 60.954 55.000 3.95 0.00 0.00 5.03
218 219 1.076332 GAACACCGTTGGATTCCTCG 58.924 55.000 3.95 8.76 0.00 4.63
219 220 1.076332 CGAACACCGTTGGATTCCTC 58.924 55.000 3.95 0.00 0.00 3.71
220 221 0.682852 TCGAACACCGTTGGATTCCT 59.317 50.000 3.95 0.00 39.75 3.36
221 222 1.076332 CTCGAACACCGTTGGATTCC 58.924 55.000 0.00 0.00 39.75 3.01
222 223 2.074547 TCTCGAACACCGTTGGATTC 57.925 50.000 0.00 0.00 39.75 2.52
223 224 2.762535 ATCTCGAACACCGTTGGATT 57.237 45.000 0.00 0.00 39.75 3.01
224 225 2.742053 CAAATCTCGAACACCGTTGGAT 59.258 45.455 0.00 0.00 39.75 3.41
225 226 2.139917 CAAATCTCGAACACCGTTGGA 58.860 47.619 0.00 0.00 39.75 3.53
226 227 1.196808 CCAAATCTCGAACACCGTTGG 59.803 52.381 0.00 0.00 39.75 3.77
227 228 2.096417 GTCCAAATCTCGAACACCGTTG 60.096 50.000 0.00 0.00 39.75 4.10
228 229 2.140717 GTCCAAATCTCGAACACCGTT 58.859 47.619 0.00 0.00 39.75 4.44
229 230 1.069513 TGTCCAAATCTCGAACACCGT 59.930 47.619 0.00 0.00 39.75 4.83
230 231 1.459592 GTGTCCAAATCTCGAACACCG 59.540 52.381 3.44 0.00 35.36 4.94
231 232 2.223377 GTGTGTCCAAATCTCGAACACC 59.777 50.000 10.79 1.08 39.52 4.16
232 233 2.096909 CGTGTGTCCAAATCTCGAACAC 60.097 50.000 7.23 7.23 40.42 3.32
233 234 2.131972 CGTGTGTCCAAATCTCGAACA 58.868 47.619 0.00 0.00 0.00 3.18
234 235 1.459592 CCGTGTGTCCAAATCTCGAAC 59.540 52.381 0.00 0.00 0.00 3.95
235 236 1.069513 ACCGTGTGTCCAAATCTCGAA 59.930 47.619 0.00 0.00 0.00 3.71
236 237 0.677288 ACCGTGTGTCCAAATCTCGA 59.323 50.000 0.00 0.00 0.00 4.04
237 238 1.508632 AACCGTGTGTCCAAATCTCG 58.491 50.000 0.00 0.00 0.00 4.04
238 239 4.753107 TCTTAAACCGTGTGTCCAAATCTC 59.247 41.667 0.00 0.00 0.00 2.75
239 240 4.710324 TCTTAAACCGTGTGTCCAAATCT 58.290 39.130 0.00 0.00 0.00 2.40
240 241 4.753107 TCTCTTAAACCGTGTGTCCAAATC 59.247 41.667 0.00 0.00 0.00 2.17
241 242 4.710324 TCTCTTAAACCGTGTGTCCAAAT 58.290 39.130 0.00 0.00 0.00 2.32
242 243 4.139859 TCTCTTAAACCGTGTGTCCAAA 57.860 40.909 0.00 0.00 0.00 3.28
243 244 3.823281 TCTCTTAAACCGTGTGTCCAA 57.177 42.857 0.00 0.00 0.00 3.53
244 245 5.471556 TTATCTCTTAAACCGTGTGTCCA 57.528 39.130 0.00 0.00 0.00 4.02
245 246 6.596703 GTTTTATCTCTTAAACCGTGTGTCC 58.403 40.000 0.00 0.00 29.47 4.02
246 247 6.074142 ACGTTTTATCTCTTAAACCGTGTGTC 60.074 38.462 0.86 0.00 44.18 3.67
247 248 5.754890 ACGTTTTATCTCTTAAACCGTGTGT 59.245 36.000 0.86 0.00 44.18 3.72
248 249 6.219302 ACGTTTTATCTCTTAAACCGTGTG 57.781 37.500 0.86 0.00 44.18 3.82
249 250 6.849588 AACGTTTTATCTCTTAAACCGTGT 57.150 33.333 0.00 0.00 44.82 4.49
250 251 9.649024 TTAAAACGTTTTATCTCTTAAACCGTG 57.351 29.630 28.69 0.00 44.82 4.94
291 292 7.011669 TGTCGTAATCGGAGAGTTTTTCTTTTT 59.988 33.333 0.00 0.00 43.63 1.94
292 293 6.480981 TGTCGTAATCGGAGAGTTTTTCTTTT 59.519 34.615 0.00 0.00 43.63 2.27
293 294 5.987347 TGTCGTAATCGGAGAGTTTTTCTTT 59.013 36.000 0.00 0.00 43.63 2.52
294 295 5.535333 TGTCGTAATCGGAGAGTTTTTCTT 58.465 37.500 0.00 0.00 43.63 2.52
295 296 5.130292 TGTCGTAATCGGAGAGTTTTTCT 57.870 39.130 0.00 0.00 43.63 2.52
296 297 5.834239 TTGTCGTAATCGGAGAGTTTTTC 57.166 39.130 0.00 0.00 43.63 2.29
297 298 6.796705 ATTTGTCGTAATCGGAGAGTTTTT 57.203 33.333 0.00 0.00 43.63 1.94
298 299 7.385752 TGTTATTTGTCGTAATCGGAGAGTTTT 59.614 33.333 0.00 0.00 43.63 2.43
299 300 6.869913 TGTTATTTGTCGTAATCGGAGAGTTT 59.130 34.615 0.00 0.00 43.63 2.66
300 301 6.309737 GTGTTATTTGTCGTAATCGGAGAGTT 59.690 38.462 0.00 0.00 43.63 3.01
301 302 5.803967 GTGTTATTTGTCGTAATCGGAGAGT 59.196 40.000 0.00 0.00 43.63 3.24
302 303 5.803461 TGTGTTATTTGTCGTAATCGGAGAG 59.197 40.000 0.00 0.00 43.63 3.20
303 304 5.574055 GTGTGTTATTTGTCGTAATCGGAGA 59.426 40.000 0.00 0.00 45.75 3.71
304 305 5.346551 TGTGTGTTATTTGTCGTAATCGGAG 59.653 40.000 0.00 0.00 37.69 4.63
305 306 5.228665 TGTGTGTTATTTGTCGTAATCGGA 58.771 37.500 0.00 0.00 37.69 4.55
306 307 5.518529 TGTGTGTTATTTGTCGTAATCGG 57.481 39.130 0.00 0.00 37.69 4.18
307 308 5.447846 GCATGTGTGTTATTTGTCGTAATCG 59.552 40.000 0.00 0.00 38.55 3.34
308 309 6.310960 TGCATGTGTGTTATTTGTCGTAATC 58.689 36.000 0.00 0.00 0.00 1.75
309 310 6.247727 TGCATGTGTGTTATTTGTCGTAAT 57.752 33.333 0.00 0.00 0.00 1.89
310 311 5.674933 TGCATGTGTGTTATTTGTCGTAA 57.325 34.783 0.00 0.00 0.00 3.18
311 312 4.377943 GCTGCATGTGTGTTATTTGTCGTA 60.378 41.667 0.00 0.00 0.00 3.43
312 313 3.609175 GCTGCATGTGTGTTATTTGTCGT 60.609 43.478 0.00 0.00 0.00 4.34
313 314 2.910482 GCTGCATGTGTGTTATTTGTCG 59.090 45.455 0.00 0.00 0.00 4.35
314 315 2.910482 CGCTGCATGTGTGTTATTTGTC 59.090 45.455 0.00 0.00 0.00 3.18
315 316 2.293122 ACGCTGCATGTGTGTTATTTGT 59.707 40.909 0.00 0.00 38.09 2.83
316 317 2.932498 ACGCTGCATGTGTGTTATTTG 58.068 42.857 0.00 0.00 38.09 2.32
325 326 1.667212 ACATATGACACGCTGCATGTG 59.333 47.619 5.91 15.46 42.99 3.21
326 327 1.935873 GACATATGACACGCTGCATGT 59.064 47.619 10.38 0.00 0.00 3.21
327 328 1.071041 CGACATATGACACGCTGCATG 60.071 52.381 10.38 0.00 0.00 4.06
328 329 1.211743 CGACATATGACACGCTGCAT 58.788 50.000 10.38 0.00 0.00 3.96
329 330 1.420641 GCGACATATGACACGCTGCA 61.421 55.000 25.66 0.00 46.06 4.41
330 331 1.273887 GCGACATATGACACGCTGC 59.726 57.895 25.66 10.99 46.06 5.25
334 335 2.776312 AGGTAGCGACATATGACACG 57.224 50.000 10.38 12.56 0.00 4.49
335 336 5.434352 TTCTAGGTAGCGACATATGACAC 57.566 43.478 10.38 0.00 0.00 3.67
336 337 5.826208 TCTTTCTAGGTAGCGACATATGACA 59.174 40.000 10.38 0.00 0.00 3.58
337 338 6.315091 TCTTTCTAGGTAGCGACATATGAC 57.685 41.667 10.38 1.80 0.00 3.06
338 339 6.715264 TCATCTTTCTAGGTAGCGACATATGA 59.285 38.462 10.38 0.00 0.00 2.15
339 340 6.914259 TCATCTTTCTAGGTAGCGACATATG 58.086 40.000 0.00 0.00 0.00 1.78
340 341 6.943146 TCTCATCTTTCTAGGTAGCGACATAT 59.057 38.462 0.00 0.00 0.00 1.78
341 342 6.296803 TCTCATCTTTCTAGGTAGCGACATA 58.703 40.000 0.00 0.00 0.00 2.29
342 343 5.133941 TCTCATCTTTCTAGGTAGCGACAT 58.866 41.667 0.00 0.00 0.00 3.06
343 344 4.524053 TCTCATCTTTCTAGGTAGCGACA 58.476 43.478 0.00 0.00 0.00 4.35
344 345 4.577283 ACTCTCATCTTTCTAGGTAGCGAC 59.423 45.833 0.00 0.00 0.00 5.19
345 346 4.576873 CACTCTCATCTTTCTAGGTAGCGA 59.423 45.833 0.00 0.00 0.00 4.93
346 347 4.576873 TCACTCTCATCTTTCTAGGTAGCG 59.423 45.833 0.00 0.00 0.00 4.26
347 348 6.490040 AGATCACTCTCATCTTTCTAGGTAGC 59.510 42.308 0.00 0.00 0.00 3.58
348 349 8.463930 AAGATCACTCTCATCTTTCTAGGTAG 57.536 38.462 0.00 0.00 37.31 3.18
349 350 8.690884 CAAAGATCACTCTCATCTTTCTAGGTA 58.309 37.037 4.96 0.00 44.00 3.08
350 351 7.555087 CAAAGATCACTCTCATCTTTCTAGGT 58.445 38.462 4.96 0.00 44.00 3.08
351 352 6.479660 GCAAAGATCACTCTCATCTTTCTAGG 59.520 42.308 4.96 0.00 44.00 3.02
352 353 7.040494 TGCAAAGATCACTCTCATCTTTCTAG 58.960 38.462 4.96 0.00 44.00 2.43
353 354 6.939622 TGCAAAGATCACTCTCATCTTTCTA 58.060 36.000 4.96 0.00 44.00 2.10
354 355 5.802465 TGCAAAGATCACTCTCATCTTTCT 58.198 37.500 4.96 0.00 44.00 2.52
355 356 6.313252 GTTGCAAAGATCACTCTCATCTTTC 58.687 40.000 0.00 2.71 44.00 2.62
356 357 5.106791 CGTTGCAAAGATCACTCTCATCTTT 60.107 40.000 6.52 2.46 46.88 2.52
357 358 4.391216 CGTTGCAAAGATCACTCTCATCTT 59.609 41.667 6.52 0.00 41.50 2.40
358 359 3.931468 CGTTGCAAAGATCACTCTCATCT 59.069 43.478 6.52 0.00 31.51 2.90
359 360 3.928992 TCGTTGCAAAGATCACTCTCATC 59.071 43.478 11.22 0.00 0.00 2.92
360 361 3.930336 TCGTTGCAAAGATCACTCTCAT 58.070 40.909 11.22 0.00 0.00 2.90
361 362 3.385193 TCGTTGCAAAGATCACTCTCA 57.615 42.857 11.22 0.00 0.00 3.27
362 363 4.935885 ATTCGTTGCAAAGATCACTCTC 57.064 40.909 15.88 0.00 0.00 3.20
363 364 5.482908 AGTATTCGTTGCAAAGATCACTCT 58.517 37.500 15.88 7.77 0.00 3.24
364 365 5.786401 AGTATTCGTTGCAAAGATCACTC 57.214 39.130 15.88 5.86 0.00 3.51
365 366 6.170675 GAAGTATTCGTTGCAAAGATCACT 57.829 37.500 15.88 16.95 34.17 3.41
381 382 6.973474 CCGAATTCAACTAGTCGAGAAGTATT 59.027 38.462 6.22 0.00 35.54 1.89
382 383 6.318144 TCCGAATTCAACTAGTCGAGAAGTAT 59.682 38.462 6.22 0.00 35.54 2.12
383 384 5.645067 TCCGAATTCAACTAGTCGAGAAGTA 59.355 40.000 6.22 0.00 35.54 2.24
384 385 4.458295 TCCGAATTCAACTAGTCGAGAAGT 59.542 41.667 6.22 0.46 35.54 3.01
385 386 4.982999 TCCGAATTCAACTAGTCGAGAAG 58.017 43.478 6.22 0.00 35.54 2.85
386 387 5.381174 TTCCGAATTCAACTAGTCGAGAA 57.619 39.130 6.22 1.75 35.54 2.87
387 388 5.159209 GTTTCCGAATTCAACTAGTCGAGA 58.841 41.667 6.22 0.00 35.54 4.04
388 389 4.030306 CGTTTCCGAATTCAACTAGTCGAG 59.970 45.833 6.22 0.00 35.54 4.04
389 390 3.916172 CGTTTCCGAATTCAACTAGTCGA 59.084 43.478 6.22 0.00 35.54 4.20
390 391 3.916172 TCGTTTCCGAATTCAACTAGTCG 59.084 43.478 6.22 0.00 40.86 4.18
404 405 2.824071 ATCGGTCCGGTTCGTTTCCG 62.824 60.000 12.29 12.47 46.49 4.30
405 406 1.079612 ATCGGTCCGGTTCGTTTCC 60.080 57.895 12.29 3.00 0.00 3.13
406 407 0.388907 TCATCGGTCCGGTTCGTTTC 60.389 55.000 12.29 0.00 0.00 2.78
407 408 0.389426 CTCATCGGTCCGGTTCGTTT 60.389 55.000 12.29 5.68 0.00 3.60
408 409 1.214589 CTCATCGGTCCGGTTCGTT 59.785 57.895 12.29 7.71 0.00 3.85
409 410 2.707849 CCTCATCGGTCCGGTTCGT 61.708 63.158 12.29 4.51 0.00 3.85
410 411 2.104331 CCTCATCGGTCCGGTTCG 59.896 66.667 12.29 7.13 0.00 3.95
411 412 1.437986 CTCCTCATCGGTCCGGTTC 59.562 63.158 12.29 0.00 0.00 3.62
412 413 2.722201 GCTCCTCATCGGTCCGGTT 61.722 63.158 12.29 0.00 0.00 4.44
413 414 3.148279 GCTCCTCATCGGTCCGGT 61.148 66.667 12.29 0.00 0.00 5.28
414 415 2.835431 AGCTCCTCATCGGTCCGG 60.835 66.667 12.29 0.00 0.00 5.14
420 421 1.226802 CACGACCAGCTCCTCATCG 60.227 63.158 0.00 0.00 38.71 3.84
421 422 1.520342 GCACGACCAGCTCCTCATC 60.520 63.158 0.00 0.00 0.00 2.92
423 424 3.695606 GGCACGACCAGCTCCTCA 61.696 66.667 0.00 0.00 38.86 3.86
448 449 0.034896 GGACCGGACTTGTGTGACAT 59.965 55.000 9.46 0.00 0.00 3.06
458 459 3.374402 CGCAGACTGGACCGGACT 61.374 66.667 9.46 2.82 0.00 3.85
863 2047 0.036010 CTTCTAGCTGGTGGGTGTGG 60.036 60.000 0.00 0.00 0.00 4.17
885 2072 1.023513 GTGCCTAGCTCAACTGCCAG 61.024 60.000 0.00 0.00 0.00 4.85
916 2103 2.359107 GCAGCAGCACAGCACCTA 60.359 61.111 0.00 0.00 41.58 3.08
935 2122 6.265422 TGATCCCACCAGAGTATATATATGCG 59.735 42.308 5.44 0.00 0.00 4.73
1242 2460 1.901538 CACGACGAGGTGAGAAGATG 58.098 55.000 0.00 0.00 40.38 2.90
1244 2462 0.889638 AGCACGACGAGGTGAGAAGA 60.890 55.000 13.34 0.00 40.38 2.87
1245 2463 0.039074 AAGCACGACGAGGTGAGAAG 60.039 55.000 13.34 0.00 40.38 2.85
1246 2464 1.241165 TAAGCACGACGAGGTGAGAA 58.759 50.000 13.34 0.00 40.38 2.87
1348 2590 8.981724 TCTACATACATGTGTACTGAAAGAAC 57.018 34.615 9.11 0.00 41.89 3.01
1384 2630 0.792640 CAAGCACGACAGGATCACAC 59.207 55.000 0.00 0.00 0.00 3.82
1519 2771 1.214589 CTTCCAGTACCCCGACGTG 59.785 63.158 0.00 0.00 0.00 4.49
2055 3359 2.137528 TTGTCCTCGTGGCTGTCCA 61.138 57.895 0.00 0.00 40.85 4.02
2530 3846 2.024117 TGCATGCGCATATGTGGTC 58.976 52.632 24.84 7.28 45.36 4.02
2662 4020 2.483877 ACGTGTTCATGGTGCAATACAG 59.516 45.455 0.00 0.00 0.00 2.74
2663 4021 2.499197 ACGTGTTCATGGTGCAATACA 58.501 42.857 0.00 0.00 0.00 2.29
2664 4022 3.682858 AGTACGTGTTCATGGTGCAATAC 59.317 43.478 0.00 0.00 0.00 1.89
2665 4023 3.932822 AGTACGTGTTCATGGTGCAATA 58.067 40.909 0.00 0.00 0.00 1.90
2678 4036 2.410730 GCAAGTTCGCATAAGTACGTGT 59.589 45.455 0.00 0.00 0.00 4.49
2853 4240 5.834169 ACTTCGAAAATACTCCTAGCTAGC 58.166 41.667 15.74 6.62 0.00 3.42
2854 4241 7.928103 TGTACTTCGAAAATACTCCTAGCTAG 58.072 38.462 14.20 14.20 0.00 3.42
2855 4242 7.870509 TGTACTTCGAAAATACTCCTAGCTA 57.129 36.000 16.22 0.00 0.00 3.32
2878 4265 6.015504 GCATACTATGTTGTGACTCGTTTTG 58.984 40.000 0.00 0.00 0.00 2.44
2966 4354 3.455910 TCTGACTGGGGATTGTAATCAGG 59.544 47.826 6.90 0.00 37.15 3.86
2967 4355 4.760530 TCTGACTGGGGATTGTAATCAG 57.239 45.455 6.90 0.00 37.15 2.90
3058 4446 7.663081 AGGGAGTATTGTAATCAACTGCATATG 59.337 37.037 0.00 0.00 36.33 1.78
3117 4505 8.642908 ATTACGTTGATCAAATTGACGATCTA 57.357 30.769 20.46 3.48 39.06 1.98
3120 4508 8.192068 TGTATTACGTTGATCAAATTGACGAT 57.808 30.769 20.46 9.26 37.20 3.73
3469 5725 8.960591 ACTAAGCACGGTAAGATACTAGTAAAA 58.039 33.333 6.70 0.00 0.00 1.52


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.