Multiple sequence alignment - TraesCS2A01G201000

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS2A01G201000 chr2A 100.000 4001 0 0 1 4001 174025194 174029194 0.000000e+00 7389
1 TraesCS2A01G201000 chr2A 92.507 1121 76 7 2269 3384 174195615 174196732 0.000000e+00 1598
2 TraesCS2A01G201000 chr2A 83.741 1144 155 20 2053 3178 174245624 174246754 0.000000e+00 1053
3 TraesCS2A01G201000 chr2A 92.449 543 39 1 3397 3937 174216861 174217403 0.000000e+00 774
4 TraesCS2A01G201000 chr2A 91.560 545 44 1 3395 3937 174099753 174100297 0.000000e+00 750
5 TraesCS2A01G201000 chr2A 84.268 553 72 9 461 1001 174038864 174039413 3.540000e-145 525
6 TraesCS2A01G201000 chr2A 84.029 551 77 6 461 1003 174244259 174244806 1.650000e-143 520
7 TraesCS2A01G201000 chr2A 90.071 282 23 4 1295 1572 174245147 174245427 1.060000e-95 361
8 TraesCS2A01G201000 chr2A 87.544 281 30 5 1295 1572 174039757 174040035 1.790000e-83 320
9 TraesCS2A01G201000 chr2A 85.787 197 26 2 1005 1200 174039458 174039653 1.460000e-49 207
10 TraesCS2A01G201000 chr2A 93.243 74 5 0 3928 4001 174229252 174229325 4.230000e-20 110
11 TraesCS2A01G201000 chr2D 95.323 1967 73 10 2038 4001 174324481 174326431 0.000000e+00 3105
12 TraesCS2A01G201000 chr2D 94.486 671 29 5 343 1005 174321796 174322466 0.000000e+00 1027
13 TraesCS2A01G201000 chr2D 97.333 600 15 1 1002 1600 174322504 174323103 0.000000e+00 1018
14 TraesCS2A01G201000 chr2D 85.945 804 100 10 2053 2845 174383047 174383848 0.000000e+00 846
15 TraesCS2A01G201000 chr2D 95.192 416 16 2 1590 2001 174323237 174323652 0.000000e+00 654
16 TraesCS2A01G201000 chr2D 81.664 589 79 20 1005 1572 174382272 174382852 2.820000e-126 462
17 TraesCS2A01G201000 chr2D 83.302 533 53 19 327 840 174331088 174331603 3.640000e-125 459
18 TraesCS2A01G201000 chr2B 92.050 1434 95 8 1812 3242 222142895 222144312 0.000000e+00 1999
19 TraesCS2A01G201000 chr2B 95.079 630 30 1 376 1005 222141635 222142263 0.000000e+00 990
20 TraesCS2A01G201000 chr2B 93.673 569 28 1 1002 1570 222142301 222142861 0.000000e+00 845
21 TraesCS2A01G201000 chr2B 94.375 160 5 1 1 160 69375181 69375336 3.990000e-60 243
22 TraesCS2A01G201000 chr2B 88.136 118 14 0 1667 1784 636683972 636684089 1.500000e-29 141
23 TraesCS2A01G201000 chr3D 82.924 937 148 10 2096 3027 307881620 307882549 0.000000e+00 833
24 TraesCS2A01G201000 chr3B 82.011 945 158 10 2096 3038 413864067 413863133 0.000000e+00 793
25 TraesCS2A01G201000 chr3B 85.057 261 34 4 1298 1554 413865386 413865127 1.100000e-65 261
26 TraesCS2A01G201000 chr3B 88.235 119 12 2 1667 1784 375864069 375864186 1.500000e-29 141
27 TraesCS2A01G201000 chr3B 87.705 122 14 1 1667 1787 682655497 682655376 1.500000e-29 141
28 TraesCS2A01G201000 chr3A 81.770 938 157 12 2096 3027 427193146 427194075 0.000000e+00 773
29 TraesCS2A01G201000 chr4A 95.808 334 10 2 1 333 130525532 130525202 1.640000e-148 536
30 TraesCS2A01G201000 chr6A 95.468 331 13 2 1 331 531810258 531809930 9.850000e-146 527
31 TraesCS2A01G201000 chr6A 88.119 101 11 1 1568 1667 578513320 578513220 7.020000e-23 119
32 TraesCS2A01G201000 chr7A 94.578 332 15 3 1 331 703520633 703520962 9.920000e-141 510
33 TraesCS2A01G201000 chr7A 92.492 333 23 2 1 331 268850099 268850431 3.620000e-130 475
34 TraesCS2A01G201000 chr1A 76.978 847 168 19 2096 2935 534051259 534050433 3.640000e-125 459
35 TraesCS2A01G201000 chr1A 87.859 313 24 4 18 329 497900296 497900595 4.920000e-94 355
36 TraesCS2A01G201000 chr1A 93.671 158 6 1 1 158 398810822 398810975 2.400000e-57 233
37 TraesCS2A01G201000 chr5B 93.750 160 6 1 1 160 480410015 480409860 1.860000e-58 237
38 TraesCS2A01G201000 chr5B 93.939 132 6 2 201 331 480409857 480409727 8.770000e-47 198
39 TraesCS2A01G201000 chr5B 88.136 118 14 0 1667 1784 611231297 611231414 1.500000e-29 141
40 TraesCS2A01G201000 chr5A 93.750 160 6 1 1 160 664783068 664782913 1.860000e-58 237
41 TraesCS2A01G201000 chr5A 93.571 140 7 2 201 339 664782910 664782772 1.460000e-49 207
42 TraesCS2A01G201000 chr7B 95.522 134 5 1 201 333 750222480 750222613 3.130000e-51 213
43 TraesCS2A01G201000 chr7B 79.916 239 26 7 1568 1784 102231951 102232189 5.350000e-34 156
44 TraesCS2A01G201000 chr7B 78.279 244 31 12 1568 1789 698649698 698649455 1.940000e-28 137
45 TraesCS2A01G201000 chr7B 85.714 105 14 1 1567 1671 498089139 498089036 4.230000e-20 110
46 TraesCS2A01G201000 chr1B 94.574 129 6 1 201 328 42308233 42308361 8.770000e-47 198
47 TraesCS2A01G201000 chr1B 89.916 119 11 1 1667 1785 288163089 288163206 6.930000e-33 152
48 TraesCS2A01G201000 chr6D 89.916 119 10 2 1667 1784 340467848 340467965 6.930000e-33 152
49 TraesCS2A01G201000 chr6D 88.119 101 11 1 1568 1667 432374424 432374324 7.020000e-23 119
50 TraesCS2A01G201000 chr1D 91.089 101 7 2 1568 1667 465991034 465990935 6.970000e-28 135
51 TraesCS2A01G201000 chr1D 77.917 240 30 13 1568 1785 451388575 451388337 1.170000e-25 128
52 TraesCS2A01G201000 chrUn 79.592 196 30 7 1566 1754 40572552 40572744 9.020000e-27 132
53 TraesCS2A01G201000 chr5D 87.500 104 12 1 1565 1667 73499793 73499690 7.020000e-23 119


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS2A01G201000 chr2A 174025194 174029194 4000 False 7389.000000 7389 100.000000 1 4001 1 chr2A.!!$F1 4000
1 TraesCS2A01G201000 chr2A 174195615 174196732 1117 False 1598.000000 1598 92.507000 2269 3384 1 chr2A.!!$F3 1115
2 TraesCS2A01G201000 chr2A 174216861 174217403 542 False 774.000000 774 92.449000 3397 3937 1 chr2A.!!$F4 540
3 TraesCS2A01G201000 chr2A 174099753 174100297 544 False 750.000000 750 91.560000 3395 3937 1 chr2A.!!$F2 542
4 TraesCS2A01G201000 chr2A 174244259 174246754 2495 False 644.666667 1053 85.947000 461 3178 3 chr2A.!!$F7 2717
5 TraesCS2A01G201000 chr2A 174038864 174040035 1171 False 350.666667 525 85.866333 461 1572 3 chr2A.!!$F6 1111
6 TraesCS2A01G201000 chr2D 174321796 174326431 4635 False 1451.000000 3105 95.583500 343 4001 4 chr2D.!!$F2 3658
7 TraesCS2A01G201000 chr2D 174382272 174383848 1576 False 654.000000 846 83.804500 1005 2845 2 chr2D.!!$F3 1840
8 TraesCS2A01G201000 chr2D 174331088 174331603 515 False 459.000000 459 83.302000 327 840 1 chr2D.!!$F1 513
9 TraesCS2A01G201000 chr2B 222141635 222144312 2677 False 1278.000000 1999 93.600667 376 3242 3 chr2B.!!$F3 2866
10 TraesCS2A01G201000 chr3D 307881620 307882549 929 False 833.000000 833 82.924000 2096 3027 1 chr3D.!!$F1 931
11 TraesCS2A01G201000 chr3B 413863133 413865386 2253 True 527.000000 793 83.534000 1298 3038 2 chr3B.!!$R2 1740
12 TraesCS2A01G201000 chr3A 427193146 427194075 929 False 773.000000 773 81.770000 2096 3027 1 chr3A.!!$F1 931
13 TraesCS2A01G201000 chr1A 534050433 534051259 826 True 459.000000 459 76.978000 2096 2935 1 chr1A.!!$R1 839

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
172 173 0.030705 TGGAGGAGAGAAGGGATGGG 60.031 60.0 0.0 0.0 0.00 4.00 F
202 203 0.041238 ATCCCTGTCTTGTCGGAGGA 59.959 55.0 0.0 0.0 0.00 3.71 F
1170 1242 0.250553 TTAACCCTGCGTTCCACCTG 60.251 55.0 0.0 0.0 35.79 4.00 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1065 1137 0.180406 ACAGTGGCGGAAACTTGACT 59.820 50.0 0.0 0.0 0.00 3.41 R
1759 2143 0.621609 CCCCCGTCCTGGTTTATTGA 59.378 55.0 0.0 0.0 35.15 2.57 R
3125 4733 0.310854 CAACCACCAACTCGGCTTTC 59.689 55.0 0.0 0.0 39.03 2.62 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
46 47 2.872557 CGTAGCCTCCACGTCGAA 59.127 61.111 0.00 0.00 34.74 3.71
47 48 1.226323 CGTAGCCTCCACGTCGAAG 60.226 63.158 0.00 0.00 34.74 3.79
48 49 1.642037 CGTAGCCTCCACGTCGAAGA 61.642 60.000 5.05 0.00 34.74 2.87
49 50 0.524862 GTAGCCTCCACGTCGAAGAA 59.475 55.000 5.05 0.00 39.69 2.52
50 51 0.524862 TAGCCTCCACGTCGAAGAAC 59.475 55.000 5.05 0.00 39.69 3.01
51 52 1.006571 GCCTCCACGTCGAAGAACA 60.007 57.895 5.05 0.00 39.69 3.18
52 53 1.282930 GCCTCCACGTCGAAGAACAC 61.283 60.000 5.05 0.00 39.69 3.32
53 54 0.666577 CCTCCACGTCGAAGAACACC 60.667 60.000 5.05 0.00 39.69 4.16
54 55 0.031585 CTCCACGTCGAAGAACACCA 59.968 55.000 5.05 0.00 39.69 4.17
55 56 0.677288 TCCACGTCGAAGAACACCAT 59.323 50.000 5.05 0.00 39.69 3.55
56 57 1.068474 CCACGTCGAAGAACACCATC 58.932 55.000 5.05 0.00 39.69 3.51
57 58 1.336887 CCACGTCGAAGAACACCATCT 60.337 52.381 5.05 0.00 39.69 2.90
58 59 1.986378 CACGTCGAAGAACACCATCTC 59.014 52.381 5.05 0.00 39.69 2.75
59 60 1.067776 ACGTCGAAGAACACCATCTCC 60.068 52.381 5.05 0.00 39.69 3.71
60 61 1.736032 CGTCGAAGAACACCATCTCCC 60.736 57.143 0.00 0.00 39.69 4.30
61 62 1.550976 GTCGAAGAACACCATCTCCCT 59.449 52.381 0.00 0.00 39.69 4.20
62 63 1.825474 TCGAAGAACACCATCTCCCTC 59.175 52.381 0.00 0.00 0.00 4.30
63 64 1.827969 CGAAGAACACCATCTCCCTCT 59.172 52.381 0.00 0.00 0.00 3.69
64 65 2.234908 CGAAGAACACCATCTCCCTCTT 59.765 50.000 0.00 0.00 0.00 2.85
65 66 3.677424 CGAAGAACACCATCTCCCTCTTC 60.677 52.174 0.00 0.00 36.84 2.87
66 67 3.197927 AGAACACCATCTCCCTCTTCT 57.802 47.619 0.00 0.00 0.00 2.85
67 68 3.525862 AGAACACCATCTCCCTCTTCTT 58.474 45.455 0.00 0.00 0.00 2.52
68 69 3.262915 AGAACACCATCTCCCTCTTCTTG 59.737 47.826 0.00 0.00 0.00 3.02
69 70 1.912043 ACACCATCTCCCTCTTCTTGG 59.088 52.381 0.00 0.00 0.00 3.61
70 71 1.912043 CACCATCTCCCTCTTCTTGGT 59.088 52.381 0.00 0.00 37.96 3.67
71 72 1.912043 ACCATCTCCCTCTTCTTGGTG 59.088 52.381 0.00 0.00 36.18 4.17
72 73 1.211457 CCATCTCCCTCTTCTTGGTGG 59.789 57.143 0.00 0.00 0.00 4.61
73 74 1.912043 CATCTCCCTCTTCTTGGTGGT 59.088 52.381 0.00 0.00 0.00 4.16
74 75 1.645710 TCTCCCTCTTCTTGGTGGTC 58.354 55.000 0.00 0.00 0.00 4.02
75 76 0.247736 CTCCCTCTTCTTGGTGGTCG 59.752 60.000 0.00 0.00 0.00 4.79
76 77 1.376037 CCCTCTTCTTGGTGGTCGC 60.376 63.158 0.00 0.00 0.00 5.19
77 78 1.376037 CCTCTTCTTGGTGGTCGCC 60.376 63.158 0.00 0.00 0.00 5.54
78 79 1.371183 CTCTTCTTGGTGGTCGCCA 59.629 57.895 0.00 0.00 36.62 5.69
79 80 0.036010 CTCTTCTTGGTGGTCGCCAT 60.036 55.000 3.93 0.00 38.48 4.40
80 81 0.400213 TCTTCTTGGTGGTCGCCATT 59.600 50.000 3.93 0.00 38.48 3.16
81 82 0.523072 CTTCTTGGTGGTCGCCATTG 59.477 55.000 3.93 1.61 38.48 2.82
82 83 0.893270 TTCTTGGTGGTCGCCATTGG 60.893 55.000 3.93 0.00 38.48 3.16
83 84 1.603455 CTTGGTGGTCGCCATTGGT 60.603 57.895 4.26 0.00 38.48 3.67
84 85 1.152652 TTGGTGGTCGCCATTGGTT 60.153 52.632 4.26 0.00 38.48 3.67
85 86 1.459455 TTGGTGGTCGCCATTGGTTG 61.459 55.000 4.26 0.00 38.48 3.77
86 87 2.258286 GTGGTCGCCATTGGTTGC 59.742 61.111 4.26 0.00 35.28 4.17
91 92 4.354939 CGCCATTGGTTGCGGCAA 62.355 61.111 12.11 12.11 46.60 4.52
92 93 2.432972 GCCATTGGTTGCGGCAAG 60.433 61.111 16.97 4.28 45.52 4.01
103 104 3.726517 CGGCAAGCAACTCGGTGG 61.727 66.667 0.00 0.00 0.00 4.61
104 105 2.594592 GGCAAGCAACTCGGTGGT 60.595 61.111 0.00 0.00 0.00 4.16
105 106 2.639286 GCAAGCAACTCGGTGGTG 59.361 61.111 0.00 0.00 36.20 4.17
106 107 2.908073 GCAAGCAACTCGGTGGTGG 61.908 63.158 0.00 0.00 33.01 4.61
108 109 2.915869 AGCAACTCGGTGGTGGTT 59.084 55.556 0.00 0.00 42.00 3.67
109 110 1.226262 AGCAACTCGGTGGTGGTTT 59.774 52.632 0.00 0.00 42.00 3.27
110 111 0.818040 AGCAACTCGGTGGTGGTTTC 60.818 55.000 0.00 0.00 42.00 2.78
111 112 0.818040 GCAACTCGGTGGTGGTTTCT 60.818 55.000 0.00 0.00 33.01 2.52
112 113 1.675552 CAACTCGGTGGTGGTTTCTT 58.324 50.000 0.00 0.00 0.00 2.52
113 114 1.333619 CAACTCGGTGGTGGTTTCTTG 59.666 52.381 0.00 0.00 0.00 3.02
114 115 0.179029 ACTCGGTGGTGGTTTCTTGG 60.179 55.000 0.00 0.00 0.00 3.61
115 116 1.515521 CTCGGTGGTGGTTTCTTGGC 61.516 60.000 0.00 0.00 0.00 4.52
116 117 2.903547 CGGTGGTGGTTTCTTGGCG 61.904 63.158 0.00 0.00 0.00 5.69
117 118 1.527380 GGTGGTGGTTTCTTGGCGA 60.527 57.895 0.00 0.00 0.00 5.54
118 119 0.893727 GGTGGTGGTTTCTTGGCGAT 60.894 55.000 0.00 0.00 0.00 4.58
119 120 0.240945 GTGGTGGTTTCTTGGCGATG 59.759 55.000 0.00 0.00 0.00 3.84
120 121 0.893270 TGGTGGTTTCTTGGCGATGG 60.893 55.000 0.00 0.00 0.00 3.51
121 122 0.608035 GGTGGTTTCTTGGCGATGGA 60.608 55.000 0.00 0.00 0.00 3.41
122 123 0.804989 GTGGTTTCTTGGCGATGGAG 59.195 55.000 0.00 0.00 0.00 3.86
123 124 0.960364 TGGTTTCTTGGCGATGGAGC 60.960 55.000 0.00 0.00 0.00 4.70
124 125 0.678048 GGTTTCTTGGCGATGGAGCT 60.678 55.000 0.00 0.00 37.29 4.09
125 126 1.168714 GTTTCTTGGCGATGGAGCTT 58.831 50.000 0.00 0.00 37.29 3.74
126 127 1.541588 GTTTCTTGGCGATGGAGCTTT 59.458 47.619 0.00 0.00 37.29 3.51
127 128 1.167851 TTCTTGGCGATGGAGCTTTG 58.832 50.000 0.00 0.00 37.29 2.77
128 129 0.036732 TCTTGGCGATGGAGCTTTGT 59.963 50.000 0.00 0.00 37.29 2.83
129 130 0.883833 CTTGGCGATGGAGCTTTGTT 59.116 50.000 0.00 0.00 37.29 2.83
130 131 1.270550 CTTGGCGATGGAGCTTTGTTT 59.729 47.619 0.00 0.00 37.29 2.83
131 132 0.597568 TGGCGATGGAGCTTTGTTTG 59.402 50.000 0.00 0.00 37.29 2.93
132 133 0.598065 GGCGATGGAGCTTTGTTTGT 59.402 50.000 0.00 0.00 37.29 2.83
133 134 1.000274 GGCGATGGAGCTTTGTTTGTT 60.000 47.619 0.00 0.00 37.29 2.83
134 135 2.545742 GGCGATGGAGCTTTGTTTGTTT 60.546 45.455 0.00 0.00 37.29 2.83
135 136 2.472488 GCGATGGAGCTTTGTTTGTTTG 59.528 45.455 0.00 0.00 0.00 2.93
136 137 3.705604 CGATGGAGCTTTGTTTGTTTGT 58.294 40.909 0.00 0.00 0.00 2.83
137 138 4.111916 CGATGGAGCTTTGTTTGTTTGTT 58.888 39.130 0.00 0.00 0.00 2.83
138 139 4.566360 CGATGGAGCTTTGTTTGTTTGTTT 59.434 37.500 0.00 0.00 0.00 2.83
139 140 5.276348 CGATGGAGCTTTGTTTGTTTGTTTC 60.276 40.000 0.00 0.00 0.00 2.78
140 141 5.146010 TGGAGCTTTGTTTGTTTGTTTCT 57.854 34.783 0.00 0.00 0.00 2.52
141 142 5.546526 TGGAGCTTTGTTTGTTTGTTTCTT 58.453 33.333 0.00 0.00 0.00 2.52
142 143 5.407995 TGGAGCTTTGTTTGTTTGTTTCTTG 59.592 36.000 0.00 0.00 0.00 3.02
143 144 5.281693 AGCTTTGTTTGTTTGTTTCTTGC 57.718 34.783 0.00 0.00 0.00 4.01
144 145 4.996758 AGCTTTGTTTGTTTGTTTCTTGCT 59.003 33.333 0.00 0.00 0.00 3.91
145 146 5.469760 AGCTTTGTTTGTTTGTTTCTTGCTT 59.530 32.000 0.00 0.00 0.00 3.91
146 147 5.564882 GCTTTGTTTGTTTGTTTCTTGCTTG 59.435 36.000 0.00 0.00 0.00 4.01
147 148 6.565623 GCTTTGTTTGTTTGTTTCTTGCTTGA 60.566 34.615 0.00 0.00 0.00 3.02
148 149 6.851222 TTGTTTGTTTGTTTCTTGCTTGAA 57.149 29.167 0.00 0.00 0.00 2.69
149 150 6.464895 TGTTTGTTTGTTTCTTGCTTGAAG 57.535 33.333 0.00 0.00 0.00 3.02
150 151 5.407995 TGTTTGTTTGTTTCTTGCTTGAAGG 59.592 36.000 0.00 0.00 31.85 3.46
151 152 5.398603 TTGTTTGTTTCTTGCTTGAAGGA 57.601 34.783 0.00 0.00 31.85 3.36
152 153 5.398603 TGTTTGTTTCTTGCTTGAAGGAA 57.601 34.783 0.00 0.00 31.85 3.36
153 154 5.976458 TGTTTGTTTCTTGCTTGAAGGAAT 58.024 33.333 0.00 0.00 31.41 3.01
154 155 5.811613 TGTTTGTTTCTTGCTTGAAGGAATG 59.188 36.000 0.00 0.00 31.41 2.67
155 156 4.589216 TGTTTCTTGCTTGAAGGAATGG 57.411 40.909 0.00 0.00 31.41 3.16
156 157 4.214310 TGTTTCTTGCTTGAAGGAATGGA 58.786 39.130 0.00 0.00 31.41 3.41
157 158 4.279169 TGTTTCTTGCTTGAAGGAATGGAG 59.721 41.667 0.00 0.00 31.41 3.86
158 159 3.077484 TCTTGCTTGAAGGAATGGAGG 57.923 47.619 0.00 0.00 31.85 4.30
159 160 2.644299 TCTTGCTTGAAGGAATGGAGGA 59.356 45.455 0.00 0.00 31.85 3.71
160 161 2.795231 TGCTTGAAGGAATGGAGGAG 57.205 50.000 0.00 0.00 0.00 3.69
161 162 2.269023 TGCTTGAAGGAATGGAGGAGA 58.731 47.619 0.00 0.00 0.00 3.71
162 163 2.238144 TGCTTGAAGGAATGGAGGAGAG 59.762 50.000 0.00 0.00 0.00 3.20
163 164 2.503356 GCTTGAAGGAATGGAGGAGAGA 59.497 50.000 0.00 0.00 0.00 3.10
164 165 3.054802 GCTTGAAGGAATGGAGGAGAGAA 60.055 47.826 0.00 0.00 0.00 2.87
165 166 4.768583 CTTGAAGGAATGGAGGAGAGAAG 58.231 47.826 0.00 0.00 0.00 2.85
166 167 3.110705 TGAAGGAATGGAGGAGAGAAGG 58.889 50.000 0.00 0.00 0.00 3.46
167 168 2.188818 AGGAATGGAGGAGAGAAGGG 57.811 55.000 0.00 0.00 0.00 3.95
168 169 1.653918 AGGAATGGAGGAGAGAAGGGA 59.346 52.381 0.00 0.00 0.00 4.20
169 170 2.252408 AGGAATGGAGGAGAGAAGGGAT 59.748 50.000 0.00 0.00 0.00 3.85
170 171 2.371510 GGAATGGAGGAGAGAAGGGATG 59.628 54.545 0.00 0.00 0.00 3.51
171 172 2.115337 ATGGAGGAGAGAAGGGATGG 57.885 55.000 0.00 0.00 0.00 3.51
172 173 0.030705 TGGAGGAGAGAAGGGATGGG 60.031 60.000 0.00 0.00 0.00 4.00
173 174 0.266152 GGAGGAGAGAAGGGATGGGA 59.734 60.000 0.00 0.00 0.00 4.37
174 175 1.715785 GAGGAGAGAAGGGATGGGAG 58.284 60.000 0.00 0.00 0.00 4.30
175 176 1.219213 GAGGAGAGAAGGGATGGGAGA 59.781 57.143 0.00 0.00 0.00 3.71
176 177 1.653918 AGGAGAGAAGGGATGGGAGAA 59.346 52.381 0.00 0.00 0.00 2.87
177 178 2.252408 AGGAGAGAAGGGATGGGAGAAT 59.748 50.000 0.00 0.00 0.00 2.40
178 179 2.371510 GGAGAGAAGGGATGGGAGAATG 59.628 54.545 0.00 0.00 0.00 2.67
179 180 2.371510 GAGAGAAGGGATGGGAGAATGG 59.628 54.545 0.00 0.00 0.00 3.16
180 181 2.021639 AGAGAAGGGATGGGAGAATGGA 60.022 50.000 0.00 0.00 0.00 3.41
181 182 2.985311 GAGAAGGGATGGGAGAATGGAT 59.015 50.000 0.00 0.00 0.00 3.41
182 183 2.715336 AGAAGGGATGGGAGAATGGATG 59.285 50.000 0.00 0.00 0.00 3.51
183 184 2.520188 AGGGATGGGAGAATGGATGA 57.480 50.000 0.00 0.00 0.00 2.92
184 185 3.015399 AGGGATGGGAGAATGGATGAT 57.985 47.619 0.00 0.00 0.00 2.45
185 186 2.918266 AGGGATGGGAGAATGGATGATC 59.082 50.000 0.00 0.00 0.00 2.92
186 187 2.025510 GGGATGGGAGAATGGATGATCC 60.026 54.545 4.05 4.05 36.96 3.36
189 190 2.875094 GGGAGAATGGATGATCCCTG 57.125 55.000 9.36 0.00 46.72 4.45
190 191 2.061061 GGGAGAATGGATGATCCCTGT 58.939 52.381 9.36 0.00 46.72 4.00
191 192 2.039613 GGGAGAATGGATGATCCCTGTC 59.960 54.545 9.36 4.28 46.72 3.51
192 193 2.978278 GGAGAATGGATGATCCCTGTCT 59.022 50.000 9.36 8.56 35.03 3.41
193 194 3.393941 GGAGAATGGATGATCCCTGTCTT 59.606 47.826 9.36 0.00 35.03 3.01
194 195 4.387598 GAGAATGGATGATCCCTGTCTTG 58.612 47.826 9.36 0.00 35.03 3.02
195 196 3.784763 AGAATGGATGATCCCTGTCTTGT 59.215 43.478 9.36 0.00 35.03 3.16
196 197 3.853355 ATGGATGATCCCTGTCTTGTC 57.147 47.619 9.36 0.00 35.03 3.18
197 198 1.482182 TGGATGATCCCTGTCTTGTCG 59.518 52.381 9.36 0.00 35.03 4.35
198 199 1.202580 GGATGATCCCTGTCTTGTCGG 60.203 57.143 0.00 0.00 0.00 4.79
199 200 1.757118 GATGATCCCTGTCTTGTCGGA 59.243 52.381 0.00 0.00 0.00 4.55
200 201 1.186200 TGATCCCTGTCTTGTCGGAG 58.814 55.000 0.00 0.00 0.00 4.63
201 202 0.461961 GATCCCTGTCTTGTCGGAGG 59.538 60.000 0.00 0.00 0.00 4.30
202 203 0.041238 ATCCCTGTCTTGTCGGAGGA 59.959 55.000 0.00 0.00 0.00 3.71
203 204 0.612174 TCCCTGTCTTGTCGGAGGAG 60.612 60.000 0.00 0.00 0.00 3.69
204 205 1.216710 CCTGTCTTGTCGGAGGAGC 59.783 63.158 0.00 0.00 0.00 4.70
205 206 1.216710 CTGTCTTGTCGGAGGAGCC 59.783 63.158 0.00 0.00 0.00 4.70
206 207 1.228894 TGTCTTGTCGGAGGAGCCT 60.229 57.895 0.00 0.00 0.00 4.58
207 208 1.216710 GTCTTGTCGGAGGAGCCTG 59.783 63.158 0.00 0.00 0.00 4.85
208 209 1.228894 TCTTGTCGGAGGAGCCTGT 60.229 57.895 0.00 0.00 0.00 4.00
209 210 1.216710 CTTGTCGGAGGAGCCTGTC 59.783 63.158 0.00 0.00 0.00 3.51
210 211 2.549611 CTTGTCGGAGGAGCCTGTCG 62.550 65.000 0.00 0.00 0.00 4.35
211 212 2.750637 GTCGGAGGAGCCTGTCGA 60.751 66.667 0.00 0.55 0.00 4.20
212 213 2.122167 GTCGGAGGAGCCTGTCGAT 61.122 63.158 12.53 0.00 33.42 3.59
213 214 2.121538 TCGGAGGAGCCTGTCGATG 61.122 63.158 0.00 0.00 0.00 3.84
214 215 2.818132 GGAGGAGCCTGTCGATGG 59.182 66.667 0.00 3.40 0.00 3.51
215 216 1.758514 GGAGGAGCCTGTCGATGGA 60.759 63.158 11.00 0.00 0.00 3.41
216 217 1.739049 GAGGAGCCTGTCGATGGAG 59.261 63.158 11.00 0.00 0.00 3.86
217 218 2.107953 GGAGCCTGTCGATGGAGC 59.892 66.667 11.00 2.04 0.00 4.70
218 219 2.430610 GGAGCCTGTCGATGGAGCT 61.431 63.158 11.00 6.74 36.25 4.09
219 220 1.067250 GAGCCTGTCGATGGAGCTC 59.933 63.158 4.71 4.71 42.74 4.09
220 221 1.381056 AGCCTGTCGATGGAGCTCT 60.381 57.895 14.64 0.00 0.00 4.09
221 222 1.227205 GCCTGTCGATGGAGCTCTG 60.227 63.158 14.64 1.59 0.00 3.35
222 223 1.440893 CCTGTCGATGGAGCTCTGG 59.559 63.158 14.64 0.00 0.00 3.86
223 224 1.440893 CTGTCGATGGAGCTCTGGG 59.559 63.158 14.64 1.01 0.00 4.45
224 225 2.025767 CTGTCGATGGAGCTCTGGGG 62.026 65.000 14.64 1.39 0.00 4.96
225 226 2.444706 TCGATGGAGCTCTGGGGG 60.445 66.667 14.64 0.00 0.00 5.40
226 227 4.247380 CGATGGAGCTCTGGGGGC 62.247 72.222 14.64 0.00 0.00 5.80
227 228 4.247380 GATGGAGCTCTGGGGGCG 62.247 72.222 14.64 0.00 34.52 6.13
240 241 2.975799 GGGCGCAACGAGTGGAAA 60.976 61.111 10.83 0.00 0.00 3.13
241 242 2.548295 GGGCGCAACGAGTGGAAAA 61.548 57.895 10.83 0.00 0.00 2.29
242 243 1.357334 GGCGCAACGAGTGGAAAAA 59.643 52.632 10.83 0.00 0.00 1.94
258 259 1.064003 AAAAATTCCACCCCCAAGCC 58.936 50.000 0.00 0.00 0.00 4.35
259 260 1.191489 AAAATTCCACCCCCAAGCCG 61.191 55.000 0.00 0.00 0.00 5.52
260 261 2.087857 AAATTCCACCCCCAAGCCGA 62.088 55.000 0.00 0.00 0.00 5.54
261 262 2.087857 AATTCCACCCCCAAGCCGAA 62.088 55.000 0.00 0.00 0.00 4.30
262 263 2.499303 ATTCCACCCCCAAGCCGAAG 62.499 60.000 0.00 0.00 0.00 3.79
263 264 3.966543 CCACCCCCAAGCCGAAGT 61.967 66.667 0.00 0.00 0.00 3.01
264 265 2.115266 CACCCCCAAGCCGAAGTT 59.885 61.111 0.00 0.00 0.00 2.66
265 266 1.530655 CACCCCCAAGCCGAAGTTT 60.531 57.895 0.00 0.00 0.00 2.66
266 267 1.112916 CACCCCCAAGCCGAAGTTTT 61.113 55.000 0.00 0.00 0.00 2.43
267 268 0.826256 ACCCCCAAGCCGAAGTTTTC 60.826 55.000 0.00 0.00 0.00 2.29
275 276 2.173382 CGAAGTTTTCGCCGGCAG 59.827 61.111 28.98 19.33 46.97 4.85
276 277 2.126850 GAAGTTTTCGCCGGCAGC 60.127 61.111 28.98 9.36 38.52 5.25
277 278 3.610791 GAAGTTTTCGCCGGCAGCC 62.611 63.158 28.98 0.00 38.78 4.85
294 295 4.511838 CCCCCAAGAGGCGAAAAA 57.488 55.556 0.00 0.00 0.00 1.94
316 317 4.101448 CTCCTGGGGAGGCCAACG 62.101 72.222 5.01 0.00 45.43 4.10
332 333 1.134699 CAACGGCTGGAGATGCTCTAA 60.135 52.381 0.00 0.00 0.00 2.10
341 342 4.293494 TGGAGATGCTCTAAAGGACTGAT 58.707 43.478 0.00 0.00 0.00 2.90
358 360 2.219458 TGATGTTCGGGCGTTACAAAA 58.781 42.857 0.00 0.00 0.00 2.44
381 384 5.766702 TCGTACGTTGAATTATTGGTGTC 57.233 39.130 16.05 0.00 0.00 3.67
408 416 5.179368 ACTTTGATCACATTGTTACTGGTCG 59.821 40.000 0.00 0.00 0.00 4.79
411 419 2.761559 TCACATTGTTACTGGTCGGTG 58.238 47.619 0.00 0.00 0.00 4.94
443 459 1.143684 ACTTGCACCTTGAGTCCATGT 59.856 47.619 0.00 0.00 0.00 3.21
467 483 5.630680 TCGTCACCGCTTTTAGTTTAACTAG 59.369 40.000 4.94 0.00 31.47 2.57
556 573 1.474077 CAGATAGGCCACAACCTTTGC 59.526 52.381 5.01 0.00 41.50 3.68
632 659 5.658634 TGTCCATCTCTAGCATATACCCATC 59.341 44.000 0.00 0.00 0.00 3.51
647 676 1.620524 CCCATCCAACCAAATCAGCCT 60.621 52.381 0.00 0.00 0.00 4.58
676 706 0.850100 TCAACTGGCCTTTCTTCCCA 59.150 50.000 3.32 0.00 0.00 4.37
678 708 0.555769 AACTGGCCTTTCTTCCCACA 59.444 50.000 3.32 0.00 0.00 4.17
739 770 1.597854 CAGCTTCAGTGCCGTGGAA 60.598 57.895 0.00 0.00 0.00 3.53
759 790 0.327924 CTCCCTTGTATGTGGCACCA 59.672 55.000 16.26 2.73 0.00 4.17
773 804 1.503542 CACCATCGGCTTTGTGCTC 59.496 57.895 0.00 0.00 42.39 4.26
896 927 2.432146 CGTCATCGGGGATATGATGGAT 59.568 50.000 2.72 0.00 41.78 3.41
905 936 2.802816 GGATATGATGGATTATCGGCGC 59.197 50.000 0.00 0.00 38.71 6.53
1003 1075 2.040213 GACATTGTCCGCGAGCATGG 62.040 60.000 8.23 3.88 0.00 3.66
1012 1084 1.819208 GCGAGCATGGCCATACACA 60.819 57.895 20.30 0.00 31.66 3.72
1065 1137 3.383185 ACAAATTCGGCCACTTTGAGAAA 59.617 39.130 21.85 0.00 34.69 2.52
1170 1242 0.250553 TTAACCCTGCGTTCCACCTG 60.251 55.000 0.00 0.00 35.79 4.00
1206 1289 9.927668 AAGGTATTTGTAATTGTTTCATCAAGG 57.072 29.630 0.00 0.00 0.00 3.61
1221 1304 2.838386 CAAGGATTGGCTCACGATTG 57.162 50.000 0.00 0.00 43.94 2.67
1273 1377 6.216569 TCCTCTGAGCGTACATCATTTAATC 58.783 40.000 0.00 0.00 0.00 1.75
1611 1871 4.749245 AGTCCTCTTAACATTTTGTGCG 57.251 40.909 0.00 0.00 0.00 5.34
1759 2143 8.838649 AGTTTAGCACAAAATATTAAGGGGAT 57.161 30.769 0.00 0.00 0.00 3.85
1776 2160 2.572290 GGATCAATAAACCAGGACGGG 58.428 52.381 0.00 0.00 40.22 5.28
1990 2381 6.323996 TCAAAGACGGGAATACTGATGTAGAT 59.676 38.462 0.00 0.00 31.51 1.98
2072 3649 7.127012 TCCGTGATTTAGTACCATTAATCCA 57.873 36.000 0.00 0.00 0.00 3.41
2087 3668 9.672673 ACCATTAATCCATATGTGCTAATAGTC 57.327 33.333 1.24 0.00 0.00 2.59
2231 3822 7.883833 GGAGAAAATACCAAAGAGGACTTACTT 59.116 37.037 0.00 0.00 41.22 2.24
2232 3823 9.939802 GAGAAAATACCAAAGAGGACTTACTTA 57.060 33.333 0.00 0.00 41.22 2.24
2281 3872 2.086869 CTCAGATGACAACGGCCAATT 58.913 47.619 2.24 0.00 0.00 2.32
2444 4035 5.163195 GGAGGAGGTCATTAGCTTATTTGGA 60.163 44.000 0.00 0.00 32.30 3.53
2528 4121 8.964150 GTTTACTTGATTCCATTGTTACAACAC 58.036 33.333 0.00 0.00 38.92 3.32
2681 4280 2.818841 CATCACATACCCCGCCGA 59.181 61.111 0.00 0.00 0.00 5.54
2902 4502 3.530265 TTTGCATGATCCTTCAATGCC 57.470 42.857 11.26 0.00 36.44 4.40
2937 4537 1.290203 CACCGTCATACACTCATGCC 58.710 55.000 0.00 0.00 0.00 4.40
3002 4602 4.724074 TCAAGCTTAGGGCAATTTGATG 57.276 40.909 0.00 0.00 44.79 3.07
3049 4656 3.001838 GTGCACTATTTGTTGTCGTGTGA 59.998 43.478 10.32 0.00 0.00 3.58
3226 4835 4.324563 GCACATATATGGTCCTAGCCCATT 60.325 45.833 16.96 7.91 42.63 3.16
3235 4844 3.053917 GGTCCTAGCCCATTAAAACTCCA 60.054 47.826 0.00 0.00 0.00 3.86
3253 4862 0.176680 CACGCATGGAGCTTCCTACT 59.823 55.000 0.00 0.00 42.61 2.57
3277 4886 2.862512 CAACTTGTTTGACTGTTGCGT 58.137 42.857 0.00 0.00 37.39 5.24
3281 4892 2.024022 TTTGACTGTTGCGTGCGC 59.976 55.556 9.85 9.85 42.35 6.09
3308 4919 4.838152 GCCAGCGGCGATCTTCCA 62.838 66.667 12.98 0.00 39.62 3.53
3455 5067 2.590092 GGCGGCCACCACTCTTAT 59.410 61.111 15.62 0.00 0.00 1.73
3459 5071 0.251916 CGGCCACCACTCTTATCCAA 59.748 55.000 2.24 0.00 0.00 3.53
3490 5102 1.003580 CCACCAACCATGTCACTAGCT 59.996 52.381 0.00 0.00 0.00 3.32
3503 5115 4.769488 TGTCACTAGCTGATCTCAACTTCT 59.231 41.667 0.00 0.00 0.00 2.85
3507 5119 6.605194 TCACTAGCTGATCTCAACTTCTACAT 59.395 38.462 0.00 0.00 0.00 2.29
3623 5237 2.764128 ACCAGATCCCGCATCCGT 60.764 61.111 0.00 0.00 30.71 4.69
3711 5326 2.758009 TGAAGCTGCTTCAAAATTGGC 58.242 42.857 35.50 12.79 45.84 4.52
3741 5356 9.705103 TCAAATTCTCTATTTCATCCAAGGAAT 57.295 29.630 0.00 0.00 34.19 3.01
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
11 12 4.767255 CAGTCCCTGTCGCTGCCC 62.767 72.222 0.00 0.00 0.00 5.36
14 15 2.874010 CTACGCAGTCCCTGTCGCTG 62.874 65.000 7.59 0.00 43.93 5.18
15 16 2.675423 TACGCAGTCCCTGTCGCT 60.675 61.111 7.59 0.00 43.93 4.93
16 17 2.202623 CTACGCAGTCCCTGTCGC 60.203 66.667 7.59 0.00 43.93 5.19
17 18 2.202623 GCTACGCAGTCCCTGTCG 60.203 66.667 6.55 6.55 43.93 4.35
18 19 2.184579 GGCTACGCAGTCCCTGTC 59.815 66.667 0.00 0.00 43.93 3.51
19 20 2.283966 AGGCTACGCAGTCCCTGT 60.284 61.111 0.00 0.00 43.93 4.00
20 21 2.496817 GAGGCTACGCAGTCCCTG 59.503 66.667 0.00 0.00 43.93 4.45
21 22 2.760385 GGAGGCTACGCAGTCCCT 60.760 66.667 0.00 0.00 43.93 4.20
22 23 3.075005 TGGAGGCTACGCAGTCCC 61.075 66.667 0.00 0.00 43.93 4.46
23 24 2.184579 GTGGAGGCTACGCAGTCC 59.815 66.667 5.14 0.00 43.93 3.85
24 25 2.202623 CGTGGAGGCTACGCAGTC 60.203 66.667 11.48 0.00 43.93 3.51
25 26 2.989824 ACGTGGAGGCTACGCAGT 60.990 61.111 11.48 6.52 44.87 4.40
26 27 2.202623 GACGTGGAGGCTACGCAG 60.203 66.667 11.48 5.87 44.87 5.18
27 28 4.111016 CGACGTGGAGGCTACGCA 62.111 66.667 11.48 0.00 44.87 5.24
28 29 3.332493 TTCGACGTGGAGGCTACGC 62.332 63.158 9.60 4.81 44.87 4.42
29 30 1.226323 CTTCGACGTGGAGGCTACG 60.226 63.158 8.20 8.20 46.31 3.51
30 31 0.524862 TTCTTCGACGTGGAGGCTAC 59.475 55.000 4.76 0.00 0.00 3.58
31 32 0.524862 GTTCTTCGACGTGGAGGCTA 59.475 55.000 4.76 0.00 0.00 3.93
32 33 1.289380 GTTCTTCGACGTGGAGGCT 59.711 57.895 4.76 0.00 0.00 4.58
33 34 1.006571 TGTTCTTCGACGTGGAGGC 60.007 57.895 4.76 0.00 0.00 4.70
34 35 0.666577 GGTGTTCTTCGACGTGGAGG 60.667 60.000 3.17 3.17 0.00 4.30
35 36 0.031585 TGGTGTTCTTCGACGTGGAG 59.968 55.000 0.00 0.00 0.00 3.86
36 37 0.677288 ATGGTGTTCTTCGACGTGGA 59.323 50.000 0.00 0.00 0.00 4.02
37 38 1.068474 GATGGTGTTCTTCGACGTGG 58.932 55.000 0.00 0.00 0.00 4.94
38 39 1.986378 GAGATGGTGTTCTTCGACGTG 59.014 52.381 0.00 0.00 0.00 4.49
39 40 1.067776 GGAGATGGTGTTCTTCGACGT 60.068 52.381 0.00 0.00 0.00 4.34
40 41 1.630148 GGAGATGGTGTTCTTCGACG 58.370 55.000 0.00 0.00 0.00 5.12
41 42 1.550976 AGGGAGATGGTGTTCTTCGAC 59.449 52.381 0.00 0.00 0.00 4.20
42 43 1.825474 GAGGGAGATGGTGTTCTTCGA 59.175 52.381 0.00 0.00 0.00 3.71
43 44 1.827969 AGAGGGAGATGGTGTTCTTCG 59.172 52.381 0.00 0.00 0.00 3.79
44 45 3.517500 AGAAGAGGGAGATGGTGTTCTTC 59.482 47.826 4.36 4.36 40.31 2.87
45 46 3.525862 AGAAGAGGGAGATGGTGTTCTT 58.474 45.455 0.00 0.00 0.00 2.52
46 47 3.197927 AGAAGAGGGAGATGGTGTTCT 57.802 47.619 0.00 0.00 0.00 3.01
47 48 3.604582 CAAGAAGAGGGAGATGGTGTTC 58.395 50.000 0.00 0.00 0.00 3.18
48 49 2.307098 CCAAGAAGAGGGAGATGGTGTT 59.693 50.000 0.00 0.00 0.00 3.32
49 50 1.912043 CCAAGAAGAGGGAGATGGTGT 59.088 52.381 0.00 0.00 0.00 4.16
50 51 1.912043 ACCAAGAAGAGGGAGATGGTG 59.088 52.381 0.00 0.00 39.57 4.17
51 52 1.912043 CACCAAGAAGAGGGAGATGGT 59.088 52.381 0.00 0.00 41.65 3.55
52 53 1.211457 CCACCAAGAAGAGGGAGATGG 59.789 57.143 0.00 0.00 0.00 3.51
53 54 1.912043 ACCACCAAGAAGAGGGAGATG 59.088 52.381 0.00 0.00 0.00 2.90
54 55 2.192263 GACCACCAAGAAGAGGGAGAT 58.808 52.381 0.00 0.00 0.00 2.75
55 56 1.645710 GACCACCAAGAAGAGGGAGA 58.354 55.000 0.00 0.00 0.00 3.71
56 57 0.247736 CGACCACCAAGAAGAGGGAG 59.752 60.000 0.00 0.00 0.00 4.30
57 58 1.827399 GCGACCACCAAGAAGAGGGA 61.827 60.000 0.00 0.00 0.00 4.20
58 59 1.376037 GCGACCACCAAGAAGAGGG 60.376 63.158 0.00 0.00 0.00 4.30
59 60 1.376037 GGCGACCACCAAGAAGAGG 60.376 63.158 0.00 0.00 0.00 3.69
60 61 0.036010 ATGGCGACCACCAAGAAGAG 60.036 55.000 0.50 0.00 44.65 2.85
61 62 0.400213 AATGGCGACCACCAAGAAGA 59.600 50.000 0.50 0.00 44.65 2.87
62 63 0.523072 CAATGGCGACCACCAAGAAG 59.477 55.000 0.50 0.00 44.65 2.85
63 64 0.893270 CCAATGGCGACCACCAAGAA 60.893 55.000 0.50 0.00 44.65 2.52
64 65 1.303236 CCAATGGCGACCACCAAGA 60.303 57.895 0.50 0.00 44.65 3.02
65 66 1.178534 AACCAATGGCGACCACCAAG 61.179 55.000 0.00 0.00 44.65 3.61
66 67 1.152652 AACCAATGGCGACCACCAA 60.153 52.632 0.00 0.00 44.65 3.67
67 68 1.900981 CAACCAATGGCGACCACCA 60.901 57.895 0.00 0.00 45.82 4.17
68 69 2.961768 CAACCAATGGCGACCACC 59.038 61.111 0.00 0.00 35.80 4.61
69 70 2.258286 GCAACCAATGGCGACCAC 59.742 61.111 0.00 0.00 35.80 4.16
76 77 2.432972 GCTTGCCGCAACCAATGG 60.433 61.111 0.38 0.00 38.92 3.16
85 86 4.389576 CACCGAGTTGCTTGCCGC 62.390 66.667 0.00 0.00 39.77 6.53
86 87 3.726517 CCACCGAGTTGCTTGCCG 61.727 66.667 0.00 0.00 0.00 5.69
87 88 2.594592 ACCACCGAGTTGCTTGCC 60.595 61.111 0.00 0.00 0.00 4.52
88 89 2.639286 CACCACCGAGTTGCTTGC 59.361 61.111 0.00 0.00 0.00 4.01
89 90 1.101049 AACCACCACCGAGTTGCTTG 61.101 55.000 0.00 0.00 0.00 4.01
90 91 0.395173 AAACCACCACCGAGTTGCTT 60.395 50.000 0.00 0.00 0.00 3.91
91 92 0.818040 GAAACCACCACCGAGTTGCT 60.818 55.000 0.00 0.00 0.00 3.91
92 93 0.818040 AGAAACCACCACCGAGTTGC 60.818 55.000 0.00 0.00 0.00 4.17
93 94 1.333619 CAAGAAACCACCACCGAGTTG 59.666 52.381 0.00 0.00 0.00 3.16
94 95 1.675552 CAAGAAACCACCACCGAGTT 58.324 50.000 0.00 0.00 0.00 3.01
95 96 0.179029 CCAAGAAACCACCACCGAGT 60.179 55.000 0.00 0.00 0.00 4.18
96 97 1.515521 GCCAAGAAACCACCACCGAG 61.516 60.000 0.00 0.00 0.00 4.63
97 98 1.527380 GCCAAGAAACCACCACCGA 60.527 57.895 0.00 0.00 0.00 4.69
98 99 2.903547 CGCCAAGAAACCACCACCG 61.904 63.158 0.00 0.00 0.00 4.94
99 100 0.893727 ATCGCCAAGAAACCACCACC 60.894 55.000 0.00 0.00 0.00 4.61
100 101 0.240945 CATCGCCAAGAAACCACCAC 59.759 55.000 0.00 0.00 0.00 4.16
101 102 0.893270 CCATCGCCAAGAAACCACCA 60.893 55.000 0.00 0.00 0.00 4.17
102 103 0.608035 TCCATCGCCAAGAAACCACC 60.608 55.000 0.00 0.00 0.00 4.61
103 104 0.804989 CTCCATCGCCAAGAAACCAC 59.195 55.000 0.00 0.00 0.00 4.16
104 105 0.960364 GCTCCATCGCCAAGAAACCA 60.960 55.000 0.00 0.00 0.00 3.67
105 106 0.678048 AGCTCCATCGCCAAGAAACC 60.678 55.000 0.00 0.00 0.00 3.27
106 107 1.168714 AAGCTCCATCGCCAAGAAAC 58.831 50.000 0.00 0.00 0.00 2.78
107 108 1.541147 CAAAGCTCCATCGCCAAGAAA 59.459 47.619 0.00 0.00 0.00 2.52
108 109 1.167851 CAAAGCTCCATCGCCAAGAA 58.832 50.000 0.00 0.00 0.00 2.52
109 110 0.036732 ACAAAGCTCCATCGCCAAGA 59.963 50.000 0.00 0.00 0.00 3.02
110 111 0.883833 AACAAAGCTCCATCGCCAAG 59.116 50.000 0.00 0.00 0.00 3.61
111 112 1.000385 CAAACAAAGCTCCATCGCCAA 60.000 47.619 0.00 0.00 0.00 4.52
112 113 0.597568 CAAACAAAGCTCCATCGCCA 59.402 50.000 0.00 0.00 0.00 5.69
113 114 0.598065 ACAAACAAAGCTCCATCGCC 59.402 50.000 0.00 0.00 0.00 5.54
114 115 2.422276 AACAAACAAAGCTCCATCGC 57.578 45.000 0.00 0.00 0.00 4.58
115 116 3.705604 ACAAACAAACAAAGCTCCATCG 58.294 40.909 0.00 0.00 0.00 3.84
116 117 5.812127 AGAAACAAACAAACAAAGCTCCATC 59.188 36.000 0.00 0.00 0.00 3.51
117 118 5.733676 AGAAACAAACAAACAAAGCTCCAT 58.266 33.333 0.00 0.00 0.00 3.41
118 119 5.146010 AGAAACAAACAAACAAAGCTCCA 57.854 34.783 0.00 0.00 0.00 3.86
119 120 5.671082 GCAAGAAACAAACAAACAAAGCTCC 60.671 40.000 0.00 0.00 0.00 4.70
120 121 5.120674 AGCAAGAAACAAACAAACAAAGCTC 59.879 36.000 0.00 0.00 0.00 4.09
121 122 4.996758 AGCAAGAAACAAACAAACAAAGCT 59.003 33.333 0.00 0.00 0.00 3.74
122 123 5.281693 AGCAAGAAACAAACAAACAAAGC 57.718 34.783 0.00 0.00 0.00 3.51
123 124 6.886307 TCAAGCAAGAAACAAACAAACAAAG 58.114 32.000 0.00 0.00 0.00 2.77
124 125 6.851222 TCAAGCAAGAAACAAACAAACAAA 57.149 29.167 0.00 0.00 0.00 2.83
125 126 6.073331 CCTTCAAGCAAGAAACAAACAAACAA 60.073 34.615 0.00 0.00 33.29 2.83
126 127 5.407995 CCTTCAAGCAAGAAACAAACAAACA 59.592 36.000 0.00 0.00 33.29 2.83
127 128 5.637387 TCCTTCAAGCAAGAAACAAACAAAC 59.363 36.000 0.00 0.00 33.29 2.93
128 129 5.788450 TCCTTCAAGCAAGAAACAAACAAA 58.212 33.333 0.00 0.00 33.29 2.83
129 130 5.398603 TCCTTCAAGCAAGAAACAAACAA 57.601 34.783 0.00 0.00 33.29 2.83
130 131 5.398603 TTCCTTCAAGCAAGAAACAAACA 57.601 34.783 0.00 0.00 33.29 2.83
131 132 5.234972 CCATTCCTTCAAGCAAGAAACAAAC 59.765 40.000 0.00 0.00 33.29 2.93
132 133 5.128499 TCCATTCCTTCAAGCAAGAAACAAA 59.872 36.000 0.00 0.00 33.29 2.83
133 134 4.648762 TCCATTCCTTCAAGCAAGAAACAA 59.351 37.500 0.00 0.00 33.29 2.83
134 135 4.214310 TCCATTCCTTCAAGCAAGAAACA 58.786 39.130 0.00 0.00 33.29 2.83
135 136 4.321527 CCTCCATTCCTTCAAGCAAGAAAC 60.322 45.833 0.00 0.00 33.29 2.78
136 137 3.828451 CCTCCATTCCTTCAAGCAAGAAA 59.172 43.478 0.00 0.00 33.29 2.52
137 138 3.074390 TCCTCCATTCCTTCAAGCAAGAA 59.926 43.478 0.00 0.00 33.29 2.52
138 139 2.644299 TCCTCCATTCCTTCAAGCAAGA 59.356 45.455 0.00 0.00 33.29 3.02
139 140 3.015327 CTCCTCCATTCCTTCAAGCAAG 58.985 50.000 0.00 0.00 0.00 4.01
140 141 2.644299 TCTCCTCCATTCCTTCAAGCAA 59.356 45.455 0.00 0.00 0.00 3.91
141 142 2.238144 CTCTCCTCCATTCCTTCAAGCA 59.762 50.000 0.00 0.00 0.00 3.91
142 143 2.503356 TCTCTCCTCCATTCCTTCAAGC 59.497 50.000 0.00 0.00 0.00 4.01
143 144 4.383989 CCTTCTCTCCTCCATTCCTTCAAG 60.384 50.000 0.00 0.00 0.00 3.02
144 145 3.521126 CCTTCTCTCCTCCATTCCTTCAA 59.479 47.826 0.00 0.00 0.00 2.69
145 146 3.110705 CCTTCTCTCCTCCATTCCTTCA 58.889 50.000 0.00 0.00 0.00 3.02
146 147 2.437651 CCCTTCTCTCCTCCATTCCTTC 59.562 54.545 0.00 0.00 0.00 3.46
147 148 2.046447 TCCCTTCTCTCCTCCATTCCTT 59.954 50.000 0.00 0.00 0.00 3.36
148 149 1.653918 TCCCTTCTCTCCTCCATTCCT 59.346 52.381 0.00 0.00 0.00 3.36
149 150 2.182516 TCCCTTCTCTCCTCCATTCC 57.817 55.000 0.00 0.00 0.00 3.01
150 151 2.371510 CCATCCCTTCTCTCCTCCATTC 59.628 54.545 0.00 0.00 0.00 2.67
151 152 2.416638 CCATCCCTTCTCTCCTCCATT 58.583 52.381 0.00 0.00 0.00 3.16
152 153 1.415716 CCCATCCCTTCTCTCCTCCAT 60.416 57.143 0.00 0.00 0.00 3.41
153 154 0.030705 CCCATCCCTTCTCTCCTCCA 60.031 60.000 0.00 0.00 0.00 3.86
154 155 0.266152 TCCCATCCCTTCTCTCCTCC 59.734 60.000 0.00 0.00 0.00 4.30
155 156 1.219213 TCTCCCATCCCTTCTCTCCTC 59.781 57.143 0.00 0.00 0.00 3.71
156 157 1.324014 TCTCCCATCCCTTCTCTCCT 58.676 55.000 0.00 0.00 0.00 3.69
157 158 2.182516 TTCTCCCATCCCTTCTCTCC 57.817 55.000 0.00 0.00 0.00 3.71
158 159 2.371510 CCATTCTCCCATCCCTTCTCTC 59.628 54.545 0.00 0.00 0.00 3.20
159 160 2.021639 TCCATTCTCCCATCCCTTCTCT 60.022 50.000 0.00 0.00 0.00 3.10
160 161 2.412591 TCCATTCTCCCATCCCTTCTC 58.587 52.381 0.00 0.00 0.00 2.87
161 162 2.594536 TCCATTCTCCCATCCCTTCT 57.405 50.000 0.00 0.00 0.00 2.85
162 163 2.713167 TCATCCATTCTCCCATCCCTTC 59.287 50.000 0.00 0.00 0.00 3.46
163 164 2.793017 TCATCCATTCTCCCATCCCTT 58.207 47.619 0.00 0.00 0.00 3.95
164 165 2.520188 TCATCCATTCTCCCATCCCT 57.480 50.000 0.00 0.00 0.00 4.20
165 166 2.025510 GGATCATCCATTCTCCCATCCC 60.026 54.545 0.00 0.00 36.28 3.85
166 167 2.025510 GGGATCATCCATTCTCCCATCC 60.026 54.545 5.89 0.00 45.66 3.51
167 168 3.362870 GGGATCATCCATTCTCCCATC 57.637 52.381 5.89 0.00 45.66 3.51
170 171 2.039613 GACAGGGATCATCCATTCTCCC 59.960 54.545 5.89 0.00 46.56 4.30
171 172 2.978278 AGACAGGGATCATCCATTCTCC 59.022 50.000 5.89 0.00 38.64 3.71
172 173 4.141528 ACAAGACAGGGATCATCCATTCTC 60.142 45.833 5.89 0.00 38.64 2.87
173 174 3.784763 ACAAGACAGGGATCATCCATTCT 59.215 43.478 5.89 0.40 38.64 2.40
174 175 4.133078 GACAAGACAGGGATCATCCATTC 58.867 47.826 5.89 0.00 38.64 2.67
175 176 3.432749 CGACAAGACAGGGATCATCCATT 60.433 47.826 5.89 0.00 38.64 3.16
176 177 2.103771 CGACAAGACAGGGATCATCCAT 59.896 50.000 5.89 0.00 38.64 3.41
177 178 1.482182 CGACAAGACAGGGATCATCCA 59.518 52.381 5.89 0.00 38.64 3.41
178 179 1.202580 CCGACAAGACAGGGATCATCC 60.203 57.143 0.00 0.00 35.23 3.51
179 180 1.757118 TCCGACAAGACAGGGATCATC 59.243 52.381 0.00 0.00 0.00 2.92
180 181 1.759445 CTCCGACAAGACAGGGATCAT 59.241 52.381 0.00 0.00 0.00 2.45
181 182 1.186200 CTCCGACAAGACAGGGATCA 58.814 55.000 0.00 0.00 0.00 2.92
182 183 0.461961 CCTCCGACAAGACAGGGATC 59.538 60.000 0.00 0.00 0.00 3.36
183 184 0.041238 TCCTCCGACAAGACAGGGAT 59.959 55.000 0.00 0.00 0.00 3.85
184 185 0.612174 CTCCTCCGACAAGACAGGGA 60.612 60.000 0.00 0.00 0.00 4.20
185 186 1.893786 CTCCTCCGACAAGACAGGG 59.106 63.158 0.00 0.00 0.00 4.45
186 187 1.216710 GCTCCTCCGACAAGACAGG 59.783 63.158 0.00 0.00 0.00 4.00
187 188 1.216710 GGCTCCTCCGACAAGACAG 59.783 63.158 0.00 0.00 0.00 3.51
188 189 1.228894 AGGCTCCTCCGACAAGACA 60.229 57.895 0.00 0.00 40.77 3.41
189 190 1.216710 CAGGCTCCTCCGACAAGAC 59.783 63.158 0.00 0.00 40.77 3.01
190 191 1.228894 ACAGGCTCCTCCGACAAGA 60.229 57.895 0.00 0.00 40.77 3.02
191 192 1.216710 GACAGGCTCCTCCGACAAG 59.783 63.158 0.00 0.00 40.77 3.16
192 193 2.636412 CGACAGGCTCCTCCGACAA 61.636 63.158 0.00 0.00 40.77 3.18
193 194 2.838748 ATCGACAGGCTCCTCCGACA 62.839 60.000 10.71 0.00 40.77 4.35
194 195 2.122167 ATCGACAGGCTCCTCCGAC 61.122 63.158 10.71 0.00 40.77 4.79
195 196 2.121538 CATCGACAGGCTCCTCCGA 61.122 63.158 10.85 10.85 40.77 4.55
196 197 2.415010 CATCGACAGGCTCCTCCG 59.585 66.667 0.00 2.08 40.77 4.63
197 198 1.743321 CTCCATCGACAGGCTCCTCC 61.743 65.000 0.87 0.00 0.00 4.30
198 199 1.739049 CTCCATCGACAGGCTCCTC 59.261 63.158 0.87 0.00 0.00 3.71
199 200 2.430610 GCTCCATCGACAGGCTCCT 61.431 63.158 0.87 0.00 0.00 3.69
200 201 2.107953 GCTCCATCGACAGGCTCC 59.892 66.667 0.87 0.00 0.00 4.70
201 202 1.067250 GAGCTCCATCGACAGGCTC 59.933 63.158 0.87 13.10 41.65 4.70
202 203 1.381056 AGAGCTCCATCGACAGGCT 60.381 57.895 10.93 2.63 35.86 4.58
203 204 1.227205 CAGAGCTCCATCGACAGGC 60.227 63.158 10.93 0.00 0.00 4.85
204 205 1.440893 CCAGAGCTCCATCGACAGG 59.559 63.158 10.93 0.00 0.00 4.00
205 206 1.440893 CCCAGAGCTCCATCGACAG 59.559 63.158 10.93 0.00 0.00 3.51
206 207 2.060383 CCCCAGAGCTCCATCGACA 61.060 63.158 10.93 0.00 0.00 4.35
207 208 2.801631 CCCCCAGAGCTCCATCGAC 61.802 68.421 10.93 0.00 0.00 4.20
208 209 2.444706 CCCCCAGAGCTCCATCGA 60.445 66.667 10.93 0.00 0.00 3.59
209 210 4.247380 GCCCCCAGAGCTCCATCG 62.247 72.222 10.93 0.00 0.00 3.84
210 211 4.247380 CGCCCCCAGAGCTCCATC 62.247 72.222 10.93 0.00 0.00 3.51
223 224 2.065906 TTTTTCCACTCGTTGCGCCC 62.066 55.000 4.18 0.00 0.00 6.13
224 225 1.357334 TTTTTCCACTCGTTGCGCC 59.643 52.632 4.18 0.00 0.00 6.53
239 240 1.064003 GGCTTGGGGGTGGAATTTTT 58.936 50.000 0.00 0.00 0.00 1.94
240 241 1.191489 CGGCTTGGGGGTGGAATTTT 61.191 55.000 0.00 0.00 0.00 1.82
241 242 1.609210 CGGCTTGGGGGTGGAATTT 60.609 57.895 0.00 0.00 0.00 1.82
242 243 2.037208 CGGCTTGGGGGTGGAATT 59.963 61.111 0.00 0.00 0.00 2.17
243 244 2.499303 CTTCGGCTTGGGGGTGGAAT 62.499 60.000 0.00 0.00 0.00 3.01
244 245 3.179339 TTCGGCTTGGGGGTGGAA 61.179 61.111 0.00 0.00 0.00 3.53
245 246 3.646715 CTTCGGCTTGGGGGTGGA 61.647 66.667 0.00 0.00 0.00 4.02
246 247 2.994643 AAACTTCGGCTTGGGGGTGG 62.995 60.000 0.00 0.00 0.00 4.61
247 248 1.112916 AAAACTTCGGCTTGGGGGTG 61.113 55.000 0.00 0.00 0.00 4.61
248 249 0.826256 GAAAACTTCGGCTTGGGGGT 60.826 55.000 0.00 0.00 0.00 4.95
249 250 1.964448 GAAAACTTCGGCTTGGGGG 59.036 57.895 0.00 0.00 0.00 5.40
259 260 2.126850 GCTGCCGGCGAAAACTTC 60.127 61.111 23.90 0.00 0.00 3.01
260 261 3.670377 GGCTGCCGGCGAAAACTT 61.670 61.111 23.90 0.00 42.94 2.66
291 292 3.697799 CTCCCCAGGAGGCATTTTT 57.302 52.632 2.49 0.00 45.43 1.94
312 313 3.805267 GAGCATCTCCAGCCGTTG 58.195 61.111 0.00 0.00 0.00 4.10
323 324 4.505922 CGAACATCAGTCCTTTAGAGCATC 59.494 45.833 0.00 0.00 0.00 3.91
324 325 4.437239 CGAACATCAGTCCTTTAGAGCAT 58.563 43.478 0.00 0.00 0.00 3.79
325 326 3.368427 CCGAACATCAGTCCTTTAGAGCA 60.368 47.826 0.00 0.00 0.00 4.26
328 329 2.093658 GCCCGAACATCAGTCCTTTAGA 60.094 50.000 0.00 0.00 0.00 2.10
332 333 1.079127 CGCCCGAACATCAGTCCTT 60.079 57.895 0.00 0.00 0.00 3.36
341 342 1.194997 CGATTTTGTAACGCCCGAACA 59.805 47.619 0.00 0.00 0.00 3.18
358 360 5.870433 TGACACCAATAATTCAACGTACGAT 59.130 36.000 24.41 7.40 0.00 3.73
381 384 7.202526 ACCAGTAACAATGTGATCAAAGTTTG 58.797 34.615 9.44 9.44 0.00 2.93
408 416 4.142293 GGTGCAAGTAGTACTAGTACCACC 60.142 50.000 26.92 26.92 36.75 4.61
411 419 5.416952 TCAAGGTGCAAGTAGTACTAGTACC 59.583 44.000 25.97 16.01 36.75 3.34
443 459 5.630680 CTAGTTAAACTAAAAGCGGTGACGA 59.369 40.000 0.00 0.00 43.18 4.20
467 483 0.179000 AGATCCGATTGGCAGGTGAC 59.821 55.000 0.00 0.00 34.14 3.67
632 659 2.145536 GCAAAAGGCTGATTTGGTTGG 58.854 47.619 12.29 0.00 38.04 3.77
647 676 0.459489 GGCCAGTTGACAGTGCAAAA 59.541 50.000 0.00 0.00 0.00 2.44
676 706 5.163258 ACCATTCTCTCTCTTGACAAGTTGT 60.163 40.000 8.61 8.61 0.00 3.32
678 708 5.559148 ACCATTCTCTCTCTTGACAAGTT 57.441 39.130 14.75 0.00 0.00 2.66
739 770 0.328258 GGTGCCACATACAAGGGAGT 59.672 55.000 0.00 0.00 0.00 3.85
851 882 2.084681 GTACGACGTGCCACGAAGG 61.085 63.158 25.94 14.12 46.05 3.46
1003 1075 1.812571 CAAGTCAGGGTTGTGTATGGC 59.187 52.381 0.00 0.00 0.00 4.40
1012 1084 1.153756 CCTTGGCCAAGTCAGGGTT 59.846 57.895 37.09 0.00 36.72 4.11
1065 1137 0.180406 ACAGTGGCGGAAACTTGACT 59.820 50.000 0.00 0.00 0.00 3.41
1170 1242 7.121315 ACAATTACAAATACCTTGAGCTTCTCC 59.879 37.037 0.00 0.00 38.50 3.71
1206 1289 5.041951 TGTAAAACAATCGTGAGCCAATC 57.958 39.130 0.00 0.00 0.00 2.67
1221 1304 9.180678 CAATCACACACTTAATTCCTGTAAAAC 57.819 33.333 0.00 0.00 0.00 2.43
1273 1377 5.352643 AACGAGTTTTTCAGAATAACCGG 57.647 39.130 20.41 0.00 0.00 5.28
1759 2143 0.621609 CCCCCGTCCTGGTTTATTGA 59.378 55.000 0.00 0.00 35.15 2.57
1770 2154 2.443958 AACTAGTACTACCCCCGTCC 57.556 55.000 0.00 0.00 0.00 4.79
1865 2256 9.057089 AGGAAGTTTGTACTATCTTGAAACTTG 57.943 33.333 17.63 0.00 43.47 3.16
1990 2381 6.422701 CGACAAAACATGGTCTCTAGTGTTAA 59.577 38.462 0.00 0.00 33.99 2.01
2087 3668 3.689649 GCAAGGACCTGTAAATACCACTG 59.310 47.826 0.00 0.00 0.00 3.66
2281 3872 7.199167 TCTTTAATGGTCATTCCTGAGATGA 57.801 36.000 0.00 0.00 37.07 2.92
2310 3901 3.152341 AGAACAACTTGCATTCCTCCAG 58.848 45.455 0.00 0.00 0.00 3.86
2681 4280 2.579860 AGGGGAAGCTCAATGAGAACAT 59.420 45.455 15.38 0.00 38.50 2.71
2735 4334 2.253610 TGAACTCATGTACGTCCCCTT 58.746 47.619 0.00 0.00 0.00 3.95
2902 4502 0.514691 GGTGCGAGCTCAAACTCAAG 59.485 55.000 15.40 0.00 36.42 3.02
2937 4537 4.259810 CGCATCAGTCTGGTGTTATTTACG 60.260 45.833 14.58 4.07 29.39 3.18
3002 4602 3.520290 TGTAGATTGTCGTGGGTGATC 57.480 47.619 0.00 0.00 0.00 2.92
3125 4733 0.310854 CAACCACCAACTCGGCTTTC 59.689 55.000 0.00 0.00 39.03 2.62
3247 4856 3.625764 GTCAAACAAGTTGCACAGTAGGA 59.374 43.478 1.81 0.00 37.13 2.94
3253 4862 3.573598 CAACAGTCAAACAAGTTGCACA 58.426 40.909 1.81 0.00 37.13 4.57
3308 4919 1.173444 TAACCACGCGCATTGGGTTT 61.173 50.000 24.80 15.21 42.70 3.27
3364 4976 3.450115 GGACGGCGGTAGAGTGCT 61.450 66.667 13.24 0.00 0.00 4.40
3410 5022 2.905085 AGAGTGGATCATGATGCTAGGG 59.095 50.000 25.23 0.00 0.00 3.53
3455 5067 1.132657 TGGTGGGAAGTAGAGGTTGGA 60.133 52.381 0.00 0.00 0.00 3.53
3459 5071 1.359168 GGTTGGTGGGAAGTAGAGGT 58.641 55.000 0.00 0.00 0.00 3.85
3490 5102 6.322456 CCTGGACTATGTAGAAGTTGAGATCA 59.678 42.308 0.00 0.00 0.00 2.92
3503 5115 3.449377 TGCGTGAATTCCTGGACTATGTA 59.551 43.478 2.27 0.00 0.00 2.29
3507 5119 1.207089 CCTGCGTGAATTCCTGGACTA 59.793 52.381 2.27 0.00 0.00 2.59
3623 5237 1.890489 TCGACCGATTCCTCAGTCAAA 59.110 47.619 0.00 0.00 29.60 2.69
3711 5326 7.320443 TGGATGAAATAGAGAATTTGAACGG 57.680 36.000 0.00 0.00 37.93 4.44
3741 5356 9.280456 ACCTCCTTTGATAATAGAGAAACCTAA 57.720 33.333 0.00 0.00 0.00 2.69
3821 5436 2.775030 TCCCGGCAGGAGTTAGGA 59.225 61.111 3.68 0.00 40.93 2.94
3893 5508 4.166919 AGCTAGCCCTGATAAGGTCATTTT 59.833 41.667 12.13 0.00 35.97 1.82
3896 5511 2.983296 AGCTAGCCCTGATAAGGTCAT 58.017 47.619 12.13 0.00 35.97 3.06
3897 5512 2.478872 AGCTAGCCCTGATAAGGTCA 57.521 50.000 12.13 0.00 35.05 4.02
3939 5554 2.819608 GCAAAATTAGAGAGTGGGTGCA 59.180 45.455 0.00 0.00 0.00 4.57


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.