Multiple sequence alignment - TraesCS2A01G200900

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS2A01G200900 chr2A 100.000 3192 0 0 1 3192 173797287 173800478 0.000000e+00 5895.0
1 TraesCS2A01G200900 chr2A 94.286 35 2 0 3154 3188 553638118 553638084 2.000000e-03 54.7
2 TraesCS2A01G200900 chr2D 89.099 2165 146 35 104 2205 174245684 174247821 0.000000e+00 2608.0
3 TraesCS2A01G200900 chr2D 86.858 662 78 6 2204 2857 498515276 498515936 0.000000e+00 732.0
4 TraesCS2A01G200900 chr2D 92.727 55 4 0 51 105 560328355 560328301 2.640000e-11 80.5
5 TraesCS2A01G200900 chr2B 87.987 1257 115 22 119 1348 222122044 222123291 0.000000e+00 1452.0
6 TraesCS2A01G200900 chr2B 91.657 863 34 15 1375 2205 222123289 222124145 0.000000e+00 1160.0
7 TraesCS2A01G200900 chr2B 88.245 604 58 8 2256 2853 617935838 617936434 0.000000e+00 710.0
8 TraesCS2A01G200900 chr2B 84.682 346 44 9 2848 3188 717753825 717754166 1.420000e-88 337.0
9 TraesCS2A01G200900 chr2B 90.604 149 11 3 3018 3166 636079357 636079212 9.030000e-46 195.0
10 TraesCS2A01G200900 chr2B 92.727 55 4 0 51 105 93127328 93127382 2.640000e-11 80.5
11 TraesCS2A01G200900 chr2B 92.727 55 4 0 51 105 140217542 140217596 2.640000e-11 80.5
12 TraesCS2A01G200900 chr3D 88.408 647 64 7 2210 2853 409032359 409031721 0.000000e+00 769.0
13 TraesCS2A01G200900 chr3D 87.823 657 73 4 2201 2854 529125350 529126002 0.000000e+00 763.0
14 TraesCS2A01G200900 chr3D 86.036 666 77 6 2203 2853 61772653 61771989 0.000000e+00 701.0
15 TraesCS2A01G200900 chr7B 86.039 659 81 9 2203 2853 55468059 55468714 0.000000e+00 697.0
16 TraesCS2A01G200900 chr7B 81.867 557 94 7 171 724 748331685 748331133 2.240000e-126 462.0
17 TraesCS2A01G200900 chr7B 94.245 139 7 1 2935 3073 1477240 1477377 8.970000e-51 211.0
18 TraesCS2A01G200900 chr7A 85.022 681 89 11 2168 2839 166247459 166248135 0.000000e+00 680.0
19 TraesCS2A01G200900 chr7A 81.350 563 95 10 180 736 393325166 393325724 1.750000e-122 449.0
20 TraesCS2A01G200900 chr3A 85.915 639 74 12 2224 2853 557972991 557972360 0.000000e+00 667.0
21 TraesCS2A01G200900 chr3A 90.000 140 13 1 3053 3192 669202940 669202802 2.530000e-41 180.0
22 TraesCS2A01G200900 chr6A 84.992 653 81 12 2210 2853 87494892 87494248 0.000000e+00 647.0
23 TraesCS2A01G200900 chr6A 95.000 140 6 1 2934 3073 554386118 554386256 5.360000e-53 219.0
24 TraesCS2A01G200900 chr6A 87.931 174 18 3 3018 3189 311839849 311839677 5.400000e-48 202.0
25 TraesCS2A01G200900 chr6A 94.017 117 6 1 2855 2970 311839971 311839855 3.270000e-40 176.0
26 TraesCS2A01G200900 chr6A 94.118 51 3 0 56 106 70570949 70570999 9.490000e-11 78.7
27 TraesCS2A01G200900 chr7D 82.633 547 92 3 180 724 251355414 251354869 6.190000e-132 481.0
28 TraesCS2A01G200900 chr7D 81.754 570 97 7 171 736 595869669 595869103 1.340000e-128 470.0
29 TraesCS2A01G200900 chr7D 86.186 333 39 7 2848 3177 183856214 183856542 1.410000e-93 353.0
30 TraesCS2A01G200900 chr4D 81.054 607 102 10 124 721 433088620 433089222 3.730000e-129 472.0
31 TraesCS2A01G200900 chr4D 82.098 553 86 9 171 720 67289830 67289288 8.070000e-126 460.0
32 TraesCS2A01G200900 chr4D 83.481 339 38 10 2852 3186 422502233 422501909 1.860000e-77 300.0
33 TraesCS2A01G200900 chr3B 82.601 546 82 9 179 720 4652003 4651467 1.340000e-128 470.0
34 TraesCS2A01G200900 chr6D 81.416 565 91 14 180 736 389599253 389598695 1.750000e-122 449.0
35 TraesCS2A01G200900 chr6D 92.366 131 9 1 3060 3190 149721678 149721549 5.440000e-43 185.0
36 TraesCS2A01G200900 chr1B 80.862 580 104 7 162 736 330838412 330837835 1.750000e-122 449.0
37 TraesCS2A01G200900 chr1B 94.643 56 3 0 51 106 666026947 666027002 1.580000e-13 87.9
38 TraesCS2A01G200900 chr6B 83.680 337 43 7 2854 3189 487215026 487215351 1.110000e-79 307.0
39 TraesCS2A01G200900 chr1D 82.405 341 52 6 2851 3187 200629746 200629410 1.120000e-74 291.0
40 TraesCS2A01G200900 chr5A 81.503 346 40 12 2848 3191 381813915 381814238 2.440000e-66 263.0
41 TraesCS2A01G200900 chr5A 92.366 131 8 1 3062 3190 530995048 530994918 5.440000e-43 185.0
42 TraesCS2A01G200900 chr4B 86.957 207 24 3 2870 3073 571096586 571096792 2.480000e-56 230.0
43 TraesCS2A01G200900 chr5B 96.241 133 5 0 2941 3073 670073821 670073689 5.360000e-53 219.0
44 TraesCS2A01G200900 chr5B 90.968 155 11 3 2920 3073 699386448 699386600 4.170000e-49 206.0
45 TraesCS2A01G200900 chr5B 92.857 56 4 0 51 106 623152959 623152904 7.340000e-12 82.4
46 TraesCS2A01G200900 chr5B 92.857 56 4 0 51 106 626817883 626817828 7.340000e-12 82.4
47 TraesCS2A01G200900 chr5B 92.857 56 4 0 51 106 626825612 626825557 7.340000e-12 82.4
48 TraesCS2A01G200900 chr1A 91.379 58 4 1 51 107 516661625 516661682 9.490000e-11 78.7


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS2A01G200900 chr2A 173797287 173800478 3191 False 5895 5895 100.000 1 3192 1 chr2A.!!$F1 3191
1 TraesCS2A01G200900 chr2D 174245684 174247821 2137 False 2608 2608 89.099 104 2205 1 chr2D.!!$F1 2101
2 TraesCS2A01G200900 chr2D 498515276 498515936 660 False 732 732 86.858 2204 2857 1 chr2D.!!$F2 653
3 TraesCS2A01G200900 chr2B 222122044 222124145 2101 False 1306 1452 89.822 119 2205 2 chr2B.!!$F5 2086
4 TraesCS2A01G200900 chr2B 617935838 617936434 596 False 710 710 88.245 2256 2853 1 chr2B.!!$F3 597
5 TraesCS2A01G200900 chr3D 409031721 409032359 638 True 769 769 88.408 2210 2853 1 chr3D.!!$R2 643
6 TraesCS2A01G200900 chr3D 529125350 529126002 652 False 763 763 87.823 2201 2854 1 chr3D.!!$F1 653
7 TraesCS2A01G200900 chr3D 61771989 61772653 664 True 701 701 86.036 2203 2853 1 chr3D.!!$R1 650
8 TraesCS2A01G200900 chr7B 55468059 55468714 655 False 697 697 86.039 2203 2853 1 chr7B.!!$F2 650
9 TraesCS2A01G200900 chr7B 748331133 748331685 552 True 462 462 81.867 171 724 1 chr7B.!!$R1 553
10 TraesCS2A01G200900 chr7A 166247459 166248135 676 False 680 680 85.022 2168 2839 1 chr7A.!!$F1 671
11 TraesCS2A01G200900 chr7A 393325166 393325724 558 False 449 449 81.350 180 736 1 chr7A.!!$F2 556
12 TraesCS2A01G200900 chr3A 557972360 557972991 631 True 667 667 85.915 2224 2853 1 chr3A.!!$R1 629
13 TraesCS2A01G200900 chr6A 87494248 87494892 644 True 647 647 84.992 2210 2853 1 chr6A.!!$R1 643
14 TraesCS2A01G200900 chr7D 251354869 251355414 545 True 481 481 82.633 180 724 1 chr7D.!!$R1 544
15 TraesCS2A01G200900 chr7D 595869103 595869669 566 True 470 470 81.754 171 736 1 chr7D.!!$R2 565
16 TraesCS2A01G200900 chr4D 433088620 433089222 602 False 472 472 81.054 124 721 1 chr4D.!!$F1 597
17 TraesCS2A01G200900 chr4D 67289288 67289830 542 True 460 460 82.098 171 720 1 chr4D.!!$R1 549
18 TraesCS2A01G200900 chr3B 4651467 4652003 536 True 470 470 82.601 179 720 1 chr3B.!!$R1 541
19 TraesCS2A01G200900 chr6D 389598695 389599253 558 True 449 449 81.416 180 736 1 chr6D.!!$R2 556
20 TraesCS2A01G200900 chr1B 330837835 330838412 577 True 449 449 80.862 162 736 1 chr1B.!!$R1 574

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
59 60 0.036022 GAAACAGGCCTCAGCTGACT 59.964 55.0 13.74 5.84 39.73 3.41 F
677 695 0.107066 TCGTCGCAGGGTGGTCTATA 60.107 55.0 0.00 0.00 0.00 1.31 F
1005 1041 0.542702 CCAACCCAATCCTTGCACCT 60.543 55.0 0.00 0.00 0.00 4.00 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2058 2139 0.249238 CTCGCGAAATGGAGCTAGCT 60.249 55.0 19.45 19.45 0.00 3.32 R
2121 2202 0.032952 TCTACGGTTTGCTTGCGAGT 59.967 50.0 2.14 0.00 0.00 4.18 R
2595 2708 0.181350 GGCTCGTCCCCAGATGAATT 59.819 55.0 0.00 0.00 37.58 2.17 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
22 23 4.251543 CCACCACATGGGAAGTTAAAAC 57.748 45.455 0.00 0.00 45.95 2.43
23 24 3.006430 CCACCACATGGGAAGTTAAAACC 59.994 47.826 0.00 0.00 45.95 3.27
24 25 3.006430 CACCACATGGGAAGTTAAAACCC 59.994 47.826 0.00 0.00 43.51 4.11
31 32 4.316205 GGGAAGTTAAAACCCAACAGTG 57.684 45.455 0.00 0.00 42.81 3.66
32 33 3.955551 GGGAAGTTAAAACCCAACAGTGA 59.044 43.478 0.00 0.00 42.81 3.41
33 34 4.037565 GGGAAGTTAAAACCCAACAGTGAG 59.962 45.833 0.00 0.00 42.81 3.51
34 35 4.037565 GGAAGTTAAAACCCAACAGTGAGG 59.962 45.833 0.00 0.00 0.00 3.86
41 42 2.452116 CCAACAGTGAGGGAGGTGA 58.548 57.895 0.00 0.00 0.00 4.02
42 43 0.764890 CCAACAGTGAGGGAGGTGAA 59.235 55.000 0.00 0.00 0.00 3.18
43 44 1.142870 CCAACAGTGAGGGAGGTGAAA 59.857 52.381 0.00 0.00 0.00 2.69
44 45 2.222027 CAACAGTGAGGGAGGTGAAAC 58.778 52.381 0.00 0.00 0.00 2.78
45 46 1.507140 ACAGTGAGGGAGGTGAAACA 58.493 50.000 0.00 0.00 39.98 2.83
46 47 1.417890 ACAGTGAGGGAGGTGAAACAG 59.582 52.381 0.00 0.00 39.98 3.16
47 48 1.059913 AGTGAGGGAGGTGAAACAGG 58.940 55.000 0.00 0.00 39.98 4.00
48 49 0.606673 GTGAGGGAGGTGAAACAGGC 60.607 60.000 0.00 0.00 39.98 4.85
49 50 1.002011 GAGGGAGGTGAAACAGGCC 60.002 63.158 0.00 0.00 39.98 5.19
50 51 1.464198 AGGGAGGTGAAACAGGCCT 60.464 57.895 0.00 0.00 39.98 5.19
51 52 1.002011 GGGAGGTGAAACAGGCCTC 60.002 63.158 0.00 0.00 45.92 4.70
53 54 3.239861 GAGGTGAAACAGGCCTCAG 57.760 57.895 0.00 0.00 45.93 3.35
54 55 0.957888 GAGGTGAAACAGGCCTCAGC 60.958 60.000 0.00 8.22 45.93 4.26
55 56 1.073897 GGTGAAACAGGCCTCAGCT 59.926 57.895 0.00 0.00 39.98 4.24
56 57 1.239968 GGTGAAACAGGCCTCAGCTG 61.240 60.000 7.63 7.63 39.98 4.24
57 58 0.250467 GTGAAACAGGCCTCAGCTGA 60.250 55.000 17.19 17.19 36.34 4.26
58 59 0.250467 TGAAACAGGCCTCAGCTGAC 60.250 55.000 13.74 3.73 39.73 3.51
59 60 0.036022 GAAACAGGCCTCAGCTGACT 59.964 55.000 13.74 5.84 39.73 3.41
60 61 0.250640 AAACAGGCCTCAGCTGACTG 60.251 55.000 24.01 24.01 45.95 3.51
70 71 1.211449 AGCTGACTGAGACTTCGCG 59.789 57.895 0.00 0.00 0.00 5.87
71 72 1.210413 GCTGACTGAGACTTCGCGA 59.790 57.895 3.71 3.71 0.00 5.87
72 73 0.387367 GCTGACTGAGACTTCGCGAA 60.387 55.000 22.01 22.01 0.00 4.70
73 74 1.612156 CTGACTGAGACTTCGCGAAG 58.388 55.000 39.55 39.55 43.79 3.79
82 83 2.631303 CTTCGCGAAGTCTCAGTCG 58.369 57.895 34.97 12.16 40.24 4.18
83 84 0.166161 CTTCGCGAAGTCTCAGTCGA 59.834 55.000 34.97 4.60 39.64 4.20
84 85 0.110328 TTCGCGAAGTCTCAGTCGAC 60.110 55.000 19.38 7.70 39.64 4.20
85 86 0.949588 TCGCGAAGTCTCAGTCGACT 60.950 55.000 13.58 13.58 45.73 4.18
86 87 0.791238 CGCGAAGTCTCAGTCGACTG 60.791 60.000 34.76 34.76 43.14 3.51
98 99 4.794248 CAGTCGACTGAGATCTAGACAG 57.206 50.000 36.73 7.99 46.59 3.51
99 100 4.438148 CAGTCGACTGAGATCTAGACAGA 58.562 47.826 36.73 2.00 46.59 3.41
100 101 4.270084 CAGTCGACTGAGATCTAGACAGAC 59.730 50.000 36.73 12.51 46.59 3.51
101 102 4.161565 AGTCGACTGAGATCTAGACAGACT 59.838 45.833 19.30 14.19 35.85 3.24
102 103 4.506654 GTCGACTGAGATCTAGACAGACTC 59.493 50.000 14.95 11.62 35.85 3.36
114 115 9.791820 GATCTAGACAGACTCTAAACTTTAACC 57.208 37.037 0.00 0.00 32.25 2.85
132 133 5.642919 TTTAACCATTAAATCACGTAGCCGT 59.357 36.000 0.00 0.00 37.73 5.68
148 149 1.752198 CGTCACCTCCTTTCCCACA 59.248 57.895 0.00 0.00 0.00 4.17
152 153 1.142870 TCACCTCCTTTCCCACACTTG 59.857 52.381 0.00 0.00 0.00 3.16
153 154 1.142870 CACCTCCTTTCCCACACTTGA 59.857 52.381 0.00 0.00 0.00 3.02
164 168 2.290641 CCCACACTTGAGGTTTTTCTCG 59.709 50.000 0.00 0.00 36.61 4.04
166 170 1.597663 ACACTTGAGGTTTTTCTCGCG 59.402 47.619 0.00 0.00 36.61 5.87
168 177 1.865340 ACTTGAGGTTTTTCTCGCGTC 59.135 47.619 5.77 0.00 36.61 5.19
169 178 1.194772 CTTGAGGTTTTTCTCGCGTCC 59.805 52.381 5.77 0.00 36.61 4.79
209 218 3.387947 CTCCGGTGGGCCTTACGT 61.388 66.667 4.53 0.00 0.00 3.57
252 261 3.953775 CCTTGCCGGTGTGAGGGT 61.954 66.667 1.90 0.00 0.00 4.34
303 312 5.942961 TGTTAGGGTTTGTGTCCTATTCAA 58.057 37.500 0.00 0.00 35.75 2.69
320 329 0.241213 CAAGAAGACGAGACTGCGGA 59.759 55.000 0.00 0.00 35.12 5.54
321 330 1.135257 CAAGAAGACGAGACTGCGGAT 60.135 52.381 0.00 0.00 35.12 4.18
325 334 1.153745 GACGAGACTGCGGATGCTT 60.154 57.895 0.00 0.00 43.34 3.91
349 358 5.966935 TCCTGAAGATGGAATAAGGTTCTCT 59.033 40.000 0.00 0.00 0.00 3.10
351 360 6.099557 CCTGAAGATGGAATAAGGTTCTCTCT 59.900 42.308 0.00 0.00 0.00 3.10
353 362 5.885449 AGATGGAATAAGGTTCTCTCTGG 57.115 43.478 0.00 0.00 0.00 3.86
354 363 5.284582 AGATGGAATAAGGTTCTCTCTGGT 58.715 41.667 0.00 0.00 0.00 4.00
360 370 2.632763 AGGTTCTCTCTGGTTAGCCT 57.367 50.000 0.00 0.00 35.27 4.58
484 495 4.196193 ACGTTCATGTTTCTTCAGGTTGA 58.804 39.130 0.00 0.00 0.00 3.18
496 507 7.601705 TTCTTCAGGTTGAATCCTTTTGATT 57.398 32.000 0.00 0.00 46.46 2.57
509 523 7.923414 ATCCTTTTGATTTACGCTACTCTTT 57.077 32.000 0.00 0.00 0.00 2.52
519 533 6.549912 TTACGCTACTCTTTATCTGCGATA 57.450 37.500 11.99 0.00 45.15 2.92
540 554 2.666190 GCTGTTCTGGTGCGCTGA 60.666 61.111 9.73 0.00 0.00 4.26
593 608 6.869913 CCCGACTGTCTATTACACAAGTTTTA 59.130 38.462 6.21 0.00 33.45 1.52
612 627 3.702048 CCGGCTCCGACAAGGGAA 61.702 66.667 10.28 0.00 42.83 3.97
654 672 1.512926 TTGGCTCGCTTCAGTTCTTC 58.487 50.000 0.00 0.00 0.00 2.87
665 683 2.148768 TCAGTTCTTCTAGTCGTCGCA 58.851 47.619 0.00 0.00 0.00 5.10
677 695 0.107066 TCGTCGCAGGGTGGTCTATA 60.107 55.000 0.00 0.00 0.00 1.31
725 743 7.566760 TTCTTGTGTTCATTGTACTGTCAAT 57.433 32.000 0.00 0.00 38.38 2.57
736 771 7.461918 CATTGTACTGTCAATGTCAAGATGAG 58.538 38.462 17.36 0.00 45.31 2.90
747 782 9.342308 TCAATGTCAAGATGAGAAAAACTAACT 57.658 29.630 0.00 0.00 0.00 2.24
900 935 1.966762 GTCAACCGGACGGAGGTAA 59.033 57.895 18.80 0.00 41.95 2.85
963 998 2.202878 GCCTCGCTATTGGACGCA 60.203 61.111 0.00 0.00 0.00 5.24
979 1014 3.044809 GCAACGAGCGTCCAATAGA 57.955 52.632 0.00 0.00 0.00 1.98
981 1016 1.933853 GCAACGAGCGTCCAATAGAAT 59.066 47.619 0.00 0.00 0.00 2.40
993 1029 2.513738 CCAATAGAATCTCCCCAACCCA 59.486 50.000 0.00 0.00 0.00 4.51
1000 1036 0.704076 TCTCCCCAACCCAATCCTTG 59.296 55.000 0.00 0.00 0.00 3.61
1005 1041 0.542702 CCAACCCAATCCTTGCACCT 60.543 55.000 0.00 0.00 0.00 4.00
1022 1061 3.008330 CACCTGCTACTACTACGTGTCT 58.992 50.000 0.00 0.00 0.00 3.41
1089 1129 2.515523 CAGCCTCCGATGCCAAGG 60.516 66.667 0.00 0.00 0.00 3.61
1168 1208 2.040012 TCTCACTGTTCTCGGAGTAGGT 59.960 50.000 4.69 0.00 0.00 3.08
1377 1420 1.268386 CGATCCATTGCATGCACTGTC 60.268 52.381 29.38 21.85 0.00 3.51
1563 1624 0.953960 GAAATCCCTTGCACGGTCGT 60.954 55.000 8.63 0.00 0.00 4.34
1594 1655 5.817296 TGTAAATTCCAGGTTCAGATCATCG 59.183 40.000 0.00 0.00 0.00 3.84
1595 1656 4.494091 AATTCCAGGTTCAGATCATCGT 57.506 40.909 0.00 0.00 0.00 3.73
1596 1657 3.526931 TTCCAGGTTCAGATCATCGTC 57.473 47.619 0.00 0.00 0.00 4.20
1598 1659 2.428530 TCCAGGTTCAGATCATCGTCTG 59.571 50.000 0.00 0.00 45.51 3.51
1599 1660 2.167281 CCAGGTTCAGATCATCGTCTGT 59.833 50.000 0.00 0.00 44.66 3.41
1605 1674 3.515630 TCAGATCATCGTCTGTTTGCTC 58.484 45.455 0.00 0.00 44.66 4.26
1623 1692 2.121948 CTCCTTGATCATGTCCAGGGA 58.878 52.381 15.76 15.76 39.64 4.20
1689 1766 6.089820 CCATTTGTTAAACTACAGCTTGCATG 59.910 38.462 0.00 0.00 0.00 4.06
1690 1767 6.384258 TTTGTTAAACTACAGCTTGCATGA 57.616 33.333 3.33 0.00 0.00 3.07
1718 1795 5.902681 TCTTGTTCGGTCTATATTGACTGG 58.097 41.667 21.19 12.25 42.07 4.00
1719 1796 4.054780 TGTTCGGTCTATATTGACTGGC 57.945 45.455 21.19 15.85 42.07 4.85
1720 1797 3.449377 TGTTCGGTCTATATTGACTGGCA 59.551 43.478 21.19 17.61 42.07 4.92
1721 1798 4.081365 TGTTCGGTCTATATTGACTGGCAA 60.081 41.667 21.19 0.00 42.07 4.52
1723 1800 4.693283 TCGGTCTATATTGACTGGCAAAG 58.307 43.478 21.19 0.00 42.07 2.77
1749 1830 8.913487 AGAAATTTTGAATTTGCTTCAGGAAT 57.087 26.923 3.58 0.00 44.48 3.01
1782 1863 6.463049 CCACGGAGGAAGAGATATACAACATT 60.463 42.308 0.00 0.00 41.22 2.71
1956 2037 4.785453 CCCCGGCTGCCTGAAGAC 62.785 72.222 17.92 0.00 0.00 3.01
2058 2139 0.892755 ATTACGGCTGAACACGAGGA 59.107 50.000 0.00 0.00 0.00 3.71
2062 2143 1.890894 GGCTGAACACGAGGAGCTA 59.109 57.895 0.00 0.00 0.00 3.32
2205 2288 6.097356 AGTTATTCACGCAGACGAAGATTAA 58.903 36.000 0.00 0.00 43.93 1.40
2220 2303 6.039047 ACGAAGATTAAAGTATCTACAGCCGA 59.961 38.462 0.00 0.00 33.81 5.54
2246 2329 1.904287 CAAATCCGACCCCTCAAACA 58.096 50.000 0.00 0.00 0.00 2.83
2249 2332 0.991920 ATCCGACCCCTCAAACACAT 59.008 50.000 0.00 0.00 0.00 3.21
2253 2343 1.586154 GACCCCTCAAACACATGCGG 61.586 60.000 0.00 0.00 0.00 5.69
2254 2344 1.303236 CCCCTCAAACACATGCGGA 60.303 57.895 0.00 0.00 0.00 5.54
2259 2349 2.112297 AAACACATGCGGACGGGT 59.888 55.556 0.00 0.00 0.00 5.28
2362 2466 8.845227 TCCATATTATTACATGCAACGTGAAAT 58.155 29.630 0.00 0.00 0.00 2.17
2586 2699 1.217882 GGTGTTGTTGGACGTCAGAG 58.782 55.000 18.91 0.00 0.00 3.35
2595 2708 0.382158 GGACGTCAGAGCGATGATGA 59.618 55.000 18.91 0.00 38.28 2.92
2598 2711 3.119291 GACGTCAGAGCGATGATGAATT 58.881 45.455 11.55 0.00 38.28 2.17
2798 2912 4.101448 GAGGCCCATGGTGCGTCT 62.101 66.667 26.98 14.71 39.76 4.18
2803 2917 1.739667 CCCATGGTGCGTCTCGATA 59.260 57.895 11.73 0.00 0.00 2.92
2813 2927 2.893895 TCTCGATACTCGGCGCGT 60.894 61.111 8.43 7.93 40.88 6.01
2854 2968 2.096406 CAACGCATTCGGACGCTG 59.904 61.111 0.00 0.00 40.69 5.18
2855 2969 2.048597 AACGCATTCGGACGCTGA 60.049 55.556 0.00 0.00 40.69 4.26
2856 2970 1.447838 AACGCATTCGGACGCTGAT 60.448 52.632 0.00 0.00 40.69 2.90
2857 2971 0.179121 AACGCATTCGGACGCTGATA 60.179 50.000 0.00 0.00 40.69 2.15
2858 2972 0.870307 ACGCATTCGGACGCTGATAC 60.870 55.000 0.00 0.00 40.69 2.24
2859 2973 1.846648 GCATTCGGACGCTGATACG 59.153 57.895 0.00 0.00 39.50 3.06
2871 2985 5.899120 ACGCTGATACGTCTCCAATATAT 57.101 39.130 0.00 0.00 44.43 0.86
2872 2986 5.881447 ACGCTGATACGTCTCCAATATATC 58.119 41.667 0.00 0.00 44.43 1.63
2873 2987 5.648526 ACGCTGATACGTCTCCAATATATCT 59.351 40.000 0.00 0.00 44.43 1.98
2874 2988 6.822170 ACGCTGATACGTCTCCAATATATCTA 59.178 38.462 0.00 0.00 44.43 1.98
2875 2989 7.127042 CGCTGATACGTCTCCAATATATCTAC 58.873 42.308 0.00 0.00 0.00 2.59
2876 2990 7.201617 CGCTGATACGTCTCCAATATATCTACA 60.202 40.741 0.00 0.00 0.00 2.74
2877 2991 8.459635 GCTGATACGTCTCCAATATATCTACAA 58.540 37.037 0.00 0.00 0.00 2.41
2957 3071 7.735326 ATATGCTATTTTATACTCCCTCCGT 57.265 36.000 0.00 0.00 0.00 4.69
2958 3072 5.464030 TGCTATTTTATACTCCCTCCGTC 57.536 43.478 0.00 0.00 0.00 4.79
2959 3073 4.282703 TGCTATTTTATACTCCCTCCGTCC 59.717 45.833 0.00 0.00 0.00 4.79
2960 3074 4.282703 GCTATTTTATACTCCCTCCGTCCA 59.717 45.833 0.00 0.00 0.00 4.02
2961 3075 5.221581 GCTATTTTATACTCCCTCCGTCCAA 60.222 44.000 0.00 0.00 0.00 3.53
2962 3076 5.703730 ATTTTATACTCCCTCCGTCCAAA 57.296 39.130 0.00 0.00 0.00 3.28
2963 3077 5.502089 TTTTATACTCCCTCCGTCCAAAA 57.498 39.130 0.00 0.00 0.00 2.44
2964 3078 5.502089 TTTATACTCCCTCCGTCCAAAAA 57.498 39.130 0.00 0.00 0.00 1.94
2965 3079 5.703730 TTATACTCCCTCCGTCCAAAAAT 57.296 39.130 0.00 0.00 0.00 1.82
2966 3080 6.811634 TTATACTCCCTCCGTCCAAAAATA 57.188 37.500 0.00 0.00 0.00 1.40
2967 3081 3.345508 ACTCCCTCCGTCCAAAAATAC 57.654 47.619 0.00 0.00 0.00 1.89
2968 3082 2.910977 ACTCCCTCCGTCCAAAAATACT 59.089 45.455 0.00 0.00 0.00 2.12
2969 3083 3.329814 ACTCCCTCCGTCCAAAAATACTT 59.670 43.478 0.00 0.00 0.00 2.24
2970 3084 3.681593 TCCCTCCGTCCAAAAATACTTG 58.318 45.455 0.00 0.00 0.00 3.16
2971 3085 3.073356 TCCCTCCGTCCAAAAATACTTGT 59.927 43.478 0.00 0.00 0.00 3.16
2972 3086 3.439129 CCCTCCGTCCAAAAATACTTGTC 59.561 47.826 0.00 0.00 0.00 3.18
2973 3087 4.069304 CCTCCGTCCAAAAATACTTGTCA 58.931 43.478 0.00 0.00 0.00 3.58
2974 3088 4.700213 CCTCCGTCCAAAAATACTTGTCAT 59.300 41.667 0.00 0.00 0.00 3.06
2975 3089 5.163754 CCTCCGTCCAAAAATACTTGTCATC 60.164 44.000 0.00 0.00 0.00 2.92
2976 3090 5.309638 TCCGTCCAAAAATACTTGTCATCA 58.690 37.500 0.00 0.00 0.00 3.07
2977 3091 5.765677 TCCGTCCAAAAATACTTGTCATCAA 59.234 36.000 0.00 0.00 0.00 2.57
2978 3092 6.263392 TCCGTCCAAAAATACTTGTCATCAAA 59.737 34.615 0.00 0.00 32.87 2.69
2979 3093 6.920758 CCGTCCAAAAATACTTGTCATCAAAA 59.079 34.615 0.00 0.00 32.87 2.44
2980 3094 7.598493 CCGTCCAAAAATACTTGTCATCAAAAT 59.402 33.333 0.00 0.00 32.87 1.82
2981 3095 8.427012 CGTCCAAAAATACTTGTCATCAAAATG 58.573 33.333 0.00 0.00 32.87 2.32
2982 3096 8.711457 GTCCAAAAATACTTGTCATCAAAATGG 58.289 33.333 0.00 0.00 33.42 3.16
2983 3097 8.646004 TCCAAAAATACTTGTCATCAAAATGGA 58.354 29.630 0.00 0.00 33.42 3.41
2984 3098 9.439500 CCAAAAATACTTGTCATCAAAATGGAT 57.561 29.630 0.00 0.00 33.42 3.41
2992 3106 8.096414 ACTTGTCATCAAAATGGATAAAAAGGG 58.904 33.333 0.00 0.00 33.42 3.95
2993 3107 7.789202 TGTCATCAAAATGGATAAAAAGGGA 57.211 32.000 0.00 0.00 33.42 4.20
2994 3108 8.378115 TGTCATCAAAATGGATAAAAAGGGAT 57.622 30.769 0.00 0.00 33.42 3.85
2995 3109 8.259411 TGTCATCAAAATGGATAAAAAGGGATG 58.741 33.333 0.00 0.00 33.42 3.51
2996 3110 8.260114 GTCATCAAAATGGATAAAAAGGGATGT 58.740 33.333 0.00 0.00 33.42 3.06
2997 3111 9.486123 TCATCAAAATGGATAAAAAGGGATGTA 57.514 29.630 0.00 0.00 33.42 2.29
3000 3114 9.713684 TCAAAATGGATAAAAAGGGATGTATCT 57.286 29.630 0.00 0.00 0.00 1.98
3030 3144 9.796180 ACTAAAATACGTCTAGATACATCCTCT 57.204 33.333 0.00 0.00 0.00 3.69
3038 3152 9.132923 ACGTCTAGATACATCCTCTTTTATTCA 57.867 33.333 0.00 0.00 0.00 2.57
3061 3175 8.972458 TCATTTTGATGATAAGTATTTCCGGA 57.028 30.769 0.00 0.00 0.00 5.14
3062 3176 8.836413 TCATTTTGATGATAAGTATTTCCGGAC 58.164 33.333 1.83 0.00 0.00 4.79
3063 3177 6.838198 TTTGATGATAAGTATTTCCGGACG 57.162 37.500 1.83 0.00 0.00 4.79
3064 3178 4.878439 TGATGATAAGTATTTCCGGACGG 58.122 43.478 1.83 3.96 0.00 4.79
3065 3179 4.585581 TGATGATAAGTATTTCCGGACGGA 59.414 41.667 1.83 9.76 43.52 4.69
3066 3180 4.579454 TGATAAGTATTTCCGGACGGAG 57.421 45.455 13.64 0.00 46.06 4.63
3067 3181 3.319972 TGATAAGTATTTCCGGACGGAGG 59.680 47.826 13.64 0.00 46.06 4.30
3068 3182 0.828677 AAGTATTTCCGGACGGAGGG 59.171 55.000 13.64 0.00 46.06 4.30
3069 3183 0.032813 AGTATTTCCGGACGGAGGGA 60.033 55.000 13.64 4.95 46.06 4.20
3070 3184 0.388294 GTATTTCCGGACGGAGGGAG 59.612 60.000 13.64 0.00 46.06 4.30
3071 3185 0.032813 TATTTCCGGACGGAGGGAGT 60.033 55.000 13.64 0.00 46.06 3.85
3072 3186 0.032813 ATTTCCGGACGGAGGGAGTA 60.033 55.000 13.64 0.00 46.06 2.59
3073 3187 0.032813 TTTCCGGACGGAGGGAGTAT 60.033 55.000 13.64 0.00 46.06 2.12
3074 3188 0.754217 TTCCGGACGGAGGGAGTATG 60.754 60.000 13.64 0.00 46.06 2.39
3075 3189 1.152819 CCGGACGGAGGGAGTATGA 60.153 63.158 4.40 0.00 37.50 2.15
3076 3190 1.453762 CCGGACGGAGGGAGTATGAC 61.454 65.000 4.40 0.00 37.50 3.06
3077 3191 0.465824 CGGACGGAGGGAGTATGACT 60.466 60.000 0.00 0.00 0.00 3.41
3078 3192 1.777941 GGACGGAGGGAGTATGACTT 58.222 55.000 0.00 0.00 0.00 3.01
3079 3193 2.108970 GGACGGAGGGAGTATGACTTT 58.891 52.381 0.00 0.00 0.00 2.66
3080 3194 2.159085 GGACGGAGGGAGTATGACTTTG 60.159 54.545 0.00 0.00 0.00 2.77
3081 3195 1.831736 ACGGAGGGAGTATGACTTTGG 59.168 52.381 0.00 0.00 0.00 3.28
3082 3196 1.139058 CGGAGGGAGTATGACTTTGGG 59.861 57.143 0.00 0.00 0.00 4.12
3083 3197 1.490910 GGAGGGAGTATGACTTTGGGG 59.509 57.143 0.00 0.00 0.00 4.96
3084 3198 2.478292 GAGGGAGTATGACTTTGGGGA 58.522 52.381 0.00 0.00 0.00 4.81
3085 3199 2.170817 GAGGGAGTATGACTTTGGGGAC 59.829 54.545 0.00 0.00 0.00 4.46
3086 3200 2.197465 GGGAGTATGACTTTGGGGACT 58.803 52.381 0.00 0.00 0.00 3.85
3087 3201 3.013648 AGGGAGTATGACTTTGGGGACTA 59.986 47.826 0.00 0.00 0.00 2.59
3088 3202 3.778629 GGGAGTATGACTTTGGGGACTAA 59.221 47.826 0.00 0.00 0.00 2.24
3089 3203 4.383880 GGGAGTATGACTTTGGGGACTAAC 60.384 50.000 0.00 0.00 0.00 2.34
3090 3204 4.383880 GGAGTATGACTTTGGGGACTAACC 60.384 50.000 0.00 0.00 38.08 2.85
3091 3205 4.436079 AGTATGACTTTGGGGACTAACCT 58.564 43.478 0.00 0.00 38.98 3.50
3092 3206 5.596763 AGTATGACTTTGGGGACTAACCTA 58.403 41.667 0.00 0.00 38.98 3.08
3093 3207 6.210522 AGTATGACTTTGGGGACTAACCTAT 58.789 40.000 0.00 0.00 38.98 2.57
3094 3208 6.677076 AGTATGACTTTGGGGACTAACCTATT 59.323 38.462 0.00 0.00 38.98 1.73
3095 3209 7.847848 AGTATGACTTTGGGGACTAACCTATTA 59.152 37.037 0.00 0.00 38.98 0.98
3096 3210 6.956102 TGACTTTGGGGACTAACCTATTAA 57.044 37.500 0.00 0.00 38.98 1.40
3097 3211 6.714278 TGACTTTGGGGACTAACCTATTAAC 58.286 40.000 0.00 0.00 38.98 2.01
3098 3212 6.070951 ACTTTGGGGACTAACCTATTAACC 57.929 41.667 0.00 0.00 38.98 2.85
3099 3213 5.794289 ACTTTGGGGACTAACCTATTAACCT 59.206 40.000 0.00 0.00 38.98 3.50
3100 3214 6.967652 ACTTTGGGGACTAACCTATTAACCTA 59.032 38.462 0.00 0.00 38.98 3.08
3101 3215 7.126879 ACTTTGGGGACTAACCTATTAACCTAG 59.873 40.741 0.00 0.00 38.98 3.02
3102 3216 6.359873 TGGGGACTAACCTATTAACCTAGA 57.640 41.667 0.00 0.00 38.98 2.43
3103 3217 6.379579 TGGGGACTAACCTATTAACCTAGAG 58.620 44.000 0.00 0.00 38.98 2.43
3104 3218 5.245751 GGGGACTAACCTATTAACCTAGAGC 59.754 48.000 0.00 0.00 38.98 4.09
3105 3219 5.245751 GGGACTAACCTATTAACCTAGAGCC 59.754 48.000 0.00 0.00 38.98 4.70
3106 3220 5.245751 GGACTAACCTATTAACCTAGAGCCC 59.754 48.000 0.00 0.00 35.41 5.19
3107 3221 5.785123 ACTAACCTATTAACCTAGAGCCCA 58.215 41.667 0.00 0.00 0.00 5.36
3108 3222 5.839606 ACTAACCTATTAACCTAGAGCCCAG 59.160 44.000 0.00 0.00 0.00 4.45
3109 3223 4.282292 ACCTATTAACCTAGAGCCCAGT 57.718 45.455 0.00 0.00 0.00 4.00
3110 3224 3.967987 ACCTATTAACCTAGAGCCCAGTG 59.032 47.826 0.00 0.00 0.00 3.66
3111 3225 3.244249 CCTATTAACCTAGAGCCCAGTGC 60.244 52.174 0.00 0.00 41.71 4.40
3112 3226 0.909623 TTAACCTAGAGCCCAGTGCC 59.090 55.000 0.00 0.00 42.71 5.01
3113 3227 0.252513 TAACCTAGAGCCCAGTGCCA 60.253 55.000 0.00 0.00 42.71 4.92
3114 3228 1.842381 AACCTAGAGCCCAGTGCCAC 61.842 60.000 0.00 0.00 42.71 5.01
3115 3229 1.992277 CCTAGAGCCCAGTGCCACT 60.992 63.158 0.00 0.00 42.71 4.00
3116 3230 1.557269 CCTAGAGCCCAGTGCCACTT 61.557 60.000 0.00 0.00 42.71 3.16
3117 3231 0.107945 CTAGAGCCCAGTGCCACTTC 60.108 60.000 0.00 0.00 42.71 3.01
3118 3232 1.553690 TAGAGCCCAGTGCCACTTCC 61.554 60.000 0.00 0.00 42.71 3.46
3119 3233 2.856000 AGCCCAGTGCCACTTCCT 60.856 61.111 0.00 0.00 42.71 3.36
3120 3234 2.674380 GCCCAGTGCCACTTCCTG 60.674 66.667 0.00 0.00 0.00 3.86
3121 3235 2.839098 CCCAGTGCCACTTCCTGT 59.161 61.111 0.00 0.00 0.00 4.00
3122 3236 1.151450 CCCAGTGCCACTTCCTGTT 59.849 57.895 0.00 0.00 0.00 3.16
3123 3237 0.468029 CCCAGTGCCACTTCCTGTTT 60.468 55.000 0.00 0.00 0.00 2.83
3124 3238 1.402787 CCAGTGCCACTTCCTGTTTT 58.597 50.000 0.00 0.00 0.00 2.43
3125 3239 1.756538 CCAGTGCCACTTCCTGTTTTT 59.243 47.619 0.00 0.00 0.00 1.94
3149 3263 7.972832 TTTCCTTATTTTAGAGTTTCGCAGA 57.027 32.000 0.00 0.00 0.00 4.26
3150 3264 7.972832 TTCCTTATTTTAGAGTTTCGCAGAA 57.027 32.000 0.00 0.00 45.90 3.02
3151 3265 7.972832 TCCTTATTTTAGAGTTTCGCAGAAA 57.027 32.000 0.55 0.55 45.90 2.52
3152 3266 8.385898 TCCTTATTTTAGAGTTTCGCAGAAAA 57.614 30.769 5.51 0.00 45.90 2.29
3153 3267 8.504005 TCCTTATTTTAGAGTTTCGCAGAAAAG 58.496 33.333 5.51 0.00 45.90 2.27
3154 3268 7.750903 CCTTATTTTAGAGTTTCGCAGAAAAGG 59.249 37.037 5.51 0.00 45.90 3.11
3155 3269 6.877611 ATTTTAGAGTTTCGCAGAAAAGGA 57.122 33.333 5.51 0.00 45.90 3.36
3156 3270 6.687081 TTTTAGAGTTTCGCAGAAAAGGAA 57.313 33.333 5.51 0.00 45.90 3.36
3157 3271 6.877611 TTTAGAGTTTCGCAGAAAAGGAAT 57.122 33.333 5.51 0.00 45.90 3.01
3158 3272 7.972832 TTTAGAGTTTCGCAGAAAAGGAATA 57.027 32.000 5.51 0.00 45.90 1.75
3159 3273 5.864628 AGAGTTTCGCAGAAAAGGAATAC 57.135 39.130 5.51 0.00 45.90 1.89
3160 3274 4.695928 AGAGTTTCGCAGAAAAGGAATACC 59.304 41.667 5.51 0.00 45.90 2.73
3161 3275 4.394729 AGTTTCGCAGAAAAGGAATACCA 58.605 39.130 5.51 0.00 45.90 3.25
3162 3276 4.825085 AGTTTCGCAGAAAAGGAATACCAA 59.175 37.500 5.51 0.00 45.90 3.67
3163 3277 5.300792 AGTTTCGCAGAAAAGGAATACCAAA 59.699 36.000 5.51 0.00 45.90 3.28
3164 3278 4.759516 TCGCAGAAAAGGAATACCAAAC 57.240 40.909 0.00 0.00 38.94 2.93
3165 3279 3.187637 TCGCAGAAAAGGAATACCAAACG 59.812 43.478 0.00 0.00 38.94 3.60
3166 3280 3.187637 CGCAGAAAAGGAATACCAAACGA 59.812 43.478 0.00 0.00 38.94 3.85
3167 3281 4.319911 CGCAGAAAAGGAATACCAAACGAA 60.320 41.667 0.00 0.00 38.94 3.85
3168 3282 5.154222 GCAGAAAAGGAATACCAAACGAAG 58.846 41.667 0.00 0.00 38.94 3.79
3169 3283 5.278315 GCAGAAAAGGAATACCAAACGAAGT 60.278 40.000 0.00 0.00 40.63 3.01
3170 3284 6.371389 CAGAAAAGGAATACCAAACGAAGTC 58.629 40.000 0.00 0.00 38.33 3.01
3171 3285 5.472478 AGAAAAGGAATACCAAACGAAGTCC 59.528 40.000 0.00 0.00 38.33 3.85
3172 3286 4.360951 AAGGAATACCAAACGAAGTCCA 57.639 40.909 0.00 0.00 38.33 4.02
3173 3287 4.360951 AGGAATACCAAACGAAGTCCAA 57.639 40.909 0.00 0.00 38.33 3.53
3174 3288 4.721132 AGGAATACCAAACGAAGTCCAAA 58.279 39.130 0.00 0.00 38.33 3.28
3175 3289 5.321927 AGGAATACCAAACGAAGTCCAAAT 58.678 37.500 0.00 0.00 38.33 2.32
3176 3290 5.183140 AGGAATACCAAACGAAGTCCAAATG 59.817 40.000 0.00 0.00 38.33 2.32
3177 3291 5.385509 AATACCAAACGAAGTCCAAATGG 57.614 39.130 0.00 0.00 45.00 3.16
3178 3292 2.938838 ACCAAACGAAGTCCAAATGGA 58.061 42.857 0.00 0.00 45.00 3.41
3179 3293 9.132385 GGAATACCAAACGAAGTCCAAATGGAA 62.132 40.741 3.17 0.00 40.10 3.53
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
3 4 3.236047 GGGTTTTAACTTCCCATGTGGT 58.764 45.455 0.00 0.00 40.79 4.16
10 11 3.955551 TCACTGTTGGGTTTTAACTTCCC 59.044 43.478 0.00 0.00 41.41 3.97
11 12 4.037565 CCTCACTGTTGGGTTTTAACTTCC 59.962 45.833 0.00 0.00 0.00 3.46
12 13 4.037565 CCCTCACTGTTGGGTTTTAACTTC 59.962 45.833 7.31 0.00 38.65 3.01
13 14 3.958147 CCCTCACTGTTGGGTTTTAACTT 59.042 43.478 7.31 0.00 38.65 2.66
14 15 3.203487 TCCCTCACTGTTGGGTTTTAACT 59.797 43.478 13.39 0.00 43.74 2.24
15 16 3.558033 TCCCTCACTGTTGGGTTTTAAC 58.442 45.455 13.39 0.00 43.74 2.01
16 17 3.435890 CCTCCCTCACTGTTGGGTTTTAA 60.436 47.826 13.39 0.00 43.74 1.52
17 18 2.107552 CCTCCCTCACTGTTGGGTTTTA 59.892 50.000 13.39 0.00 43.74 1.52
18 19 1.133482 CCTCCCTCACTGTTGGGTTTT 60.133 52.381 13.39 0.00 43.74 2.43
19 20 0.478507 CCTCCCTCACTGTTGGGTTT 59.521 55.000 13.39 0.00 43.74 3.27
20 21 0.697854 ACCTCCCTCACTGTTGGGTT 60.698 55.000 13.39 0.52 43.74 4.11
21 22 1.073706 ACCTCCCTCACTGTTGGGT 60.074 57.895 13.39 0.00 43.74 4.51
22 23 1.127567 TCACCTCCCTCACTGTTGGG 61.128 60.000 8.84 8.84 44.66 4.12
23 24 0.764890 TTCACCTCCCTCACTGTTGG 59.235 55.000 0.00 0.00 0.00 3.77
24 25 2.222027 GTTTCACCTCCCTCACTGTTG 58.778 52.381 0.00 0.00 0.00 3.33
25 26 1.843851 TGTTTCACCTCCCTCACTGTT 59.156 47.619 0.00 0.00 0.00 3.16
26 27 1.417890 CTGTTTCACCTCCCTCACTGT 59.582 52.381 0.00 0.00 0.00 3.55
27 28 1.271054 CCTGTTTCACCTCCCTCACTG 60.271 57.143 0.00 0.00 0.00 3.66
28 29 1.059913 CCTGTTTCACCTCCCTCACT 58.940 55.000 0.00 0.00 0.00 3.41
29 30 0.606673 GCCTGTTTCACCTCCCTCAC 60.607 60.000 0.00 0.00 0.00 3.51
30 31 1.761174 GCCTGTTTCACCTCCCTCA 59.239 57.895 0.00 0.00 0.00 3.86
31 32 1.002011 GGCCTGTTTCACCTCCCTC 60.002 63.158 0.00 0.00 0.00 4.30
32 33 1.464198 AGGCCTGTTTCACCTCCCT 60.464 57.895 3.11 0.00 0.00 4.20
33 34 1.002011 GAGGCCTGTTTCACCTCCC 60.002 63.158 12.00 0.00 43.54 4.30
34 35 4.724262 GAGGCCTGTTTCACCTCC 57.276 61.111 12.00 0.00 43.54 4.30
36 37 1.073897 GCTGAGGCCTGTTTCACCT 59.926 57.895 12.00 0.00 36.19 4.00
37 38 1.073897 AGCTGAGGCCTGTTTCACC 59.926 57.895 12.00 0.00 39.73 4.02
38 39 0.250467 TCAGCTGAGGCCTGTTTCAC 60.250 55.000 12.00 0.00 39.73 3.18
39 40 0.250467 GTCAGCTGAGGCCTGTTTCA 60.250 55.000 18.89 0.00 39.73 2.69
40 41 0.036022 AGTCAGCTGAGGCCTGTTTC 59.964 55.000 18.89 1.40 39.73 2.78
41 42 0.250640 CAGTCAGCTGAGGCCTGTTT 60.251 55.000 18.89 0.00 45.28 2.83
42 43 1.123861 TCAGTCAGCTGAGGCCTGTT 61.124 55.000 24.30 0.00 45.94 3.16
43 44 1.534959 TCAGTCAGCTGAGGCCTGT 60.535 57.895 24.30 0.00 45.94 4.00
44 45 3.385469 TCAGTCAGCTGAGGCCTG 58.615 61.111 18.89 20.32 45.94 4.85
51 52 1.069924 CGCGAAGTCTCAGTCAGCTG 61.070 60.000 7.63 7.63 43.87 4.24
52 53 1.211449 CGCGAAGTCTCAGTCAGCT 59.789 57.895 0.00 0.00 0.00 4.24
53 54 0.387367 TTCGCGAAGTCTCAGTCAGC 60.387 55.000 19.38 0.00 0.00 4.26
54 55 1.612156 CTTCGCGAAGTCTCAGTCAG 58.388 55.000 34.97 11.46 33.87 3.51
55 56 3.775065 CTTCGCGAAGTCTCAGTCA 57.225 52.632 34.97 5.14 33.87 3.41
64 65 0.166161 TCGACTGAGACTTCGCGAAG 59.834 55.000 39.55 39.55 43.79 3.79
65 66 0.110328 GTCGACTGAGACTTCGCGAA 60.110 55.000 22.01 22.01 38.09 4.70
66 67 1.496393 GTCGACTGAGACTTCGCGA 59.504 57.895 3.71 3.71 38.09 5.87
67 68 4.044024 GTCGACTGAGACTTCGCG 57.956 61.111 8.70 0.00 38.09 5.87
76 77 5.909456 GTCTGTCTAGATCTCAGTCGACTGA 60.909 48.000 38.24 38.24 41.76 3.41
77 78 4.270084 GTCTGTCTAGATCTCAGTCGACTG 59.730 50.000 34.76 34.76 39.10 3.51
78 79 4.161565 AGTCTGTCTAGATCTCAGTCGACT 59.838 45.833 13.58 13.58 34.94 4.18
79 80 4.439057 AGTCTGTCTAGATCTCAGTCGAC 58.561 47.826 7.70 7.70 34.94 4.20
80 81 4.404394 AGAGTCTGTCTAGATCTCAGTCGA 59.596 45.833 0.00 0.00 35.42 4.20
81 82 4.693283 AGAGTCTGTCTAGATCTCAGTCG 58.307 47.826 0.00 0.00 35.42 4.18
82 83 7.769044 AGTTTAGAGTCTGTCTAGATCTCAGTC 59.231 40.741 0.00 0.00 39.05 3.51
83 84 7.630082 AGTTTAGAGTCTGTCTAGATCTCAGT 58.370 38.462 0.00 0.00 39.05 3.41
84 85 8.506168 AAGTTTAGAGTCTGTCTAGATCTCAG 57.494 38.462 0.00 0.34 39.05 3.35
85 86 8.871629 AAAGTTTAGAGTCTGTCTAGATCTCA 57.128 34.615 0.00 0.00 39.05 3.27
88 89 9.791820 GGTTAAAGTTTAGAGTCTGTCTAGATC 57.208 37.037 1.86 0.00 39.05 2.75
89 90 9.310449 TGGTTAAAGTTTAGAGTCTGTCTAGAT 57.690 33.333 1.86 0.00 39.05 1.98
90 91 8.701908 TGGTTAAAGTTTAGAGTCTGTCTAGA 57.298 34.615 1.86 0.00 39.05 2.43
91 92 9.930693 AATGGTTAAAGTTTAGAGTCTGTCTAG 57.069 33.333 1.86 0.00 39.05 2.43
132 133 1.142870 CAAGTGTGGGAAAGGAGGTGA 59.857 52.381 0.00 0.00 0.00 4.02
148 149 1.865340 GACGCGAGAAAAACCTCAAGT 59.135 47.619 15.93 0.00 32.86 3.16
152 153 2.160063 GGGACGCGAGAAAAACCTC 58.840 57.895 15.93 0.00 0.00 3.85
153 154 4.373771 GGGACGCGAGAAAAACCT 57.626 55.556 15.93 0.00 0.00 3.50
209 218 0.398522 ATCCACCACGCCTCTATGGA 60.399 55.000 0.00 0.00 43.42 3.41
246 255 7.514721 AGTAACATCTAAAAACTGAACCCTCA 58.485 34.615 0.00 0.00 0.00 3.86
303 312 0.453793 CATCCGCAGTCTCGTCTTCT 59.546 55.000 0.00 0.00 0.00 2.85
325 334 5.966935 AGAGAACCTTATTCCATCTTCAGGA 59.033 40.000 0.00 0.00 0.00 3.86
349 358 2.283824 GGGAACGAGGCTAACCAGA 58.716 57.895 0.00 0.00 39.06 3.86
400 411 2.021068 ATCCGCCGGAGACACATCTG 62.021 60.000 13.12 0.00 34.34 2.90
496 507 4.888038 TCGCAGATAAAGAGTAGCGTAA 57.112 40.909 0.00 0.00 44.83 3.18
509 523 4.363138 CAGAACAGCAACTATCGCAGATA 58.637 43.478 0.00 0.00 45.12 1.98
519 533 2.546494 GCGCACCAGAACAGCAACT 61.546 57.895 0.30 0.00 0.00 3.16
540 554 3.248024 TCGTGATAAGGCCCCATAGAAT 58.752 45.455 0.00 0.00 0.00 2.40
612 627 4.175489 CGTCGTCGTCATCGCCCT 62.175 66.667 0.00 0.00 36.96 5.19
632 650 1.070758 AGAACTGAAGCGAGCCAAAGA 59.929 47.619 0.00 0.00 0.00 2.52
654 672 2.267681 GACCACCCTGCGACGACTAG 62.268 65.000 0.00 0.00 0.00 2.57
665 683 5.227593 ACATCCAGATTTATAGACCACCCT 58.772 41.667 0.00 0.00 0.00 4.34
712 730 7.389232 TCTCATCTTGACATTGACAGTACAAT 58.611 34.615 0.00 0.00 40.50 2.71
725 743 9.607988 TGTTAGTTAGTTTTTCTCATCTTGACA 57.392 29.630 0.00 0.00 0.00 3.58
790 825 7.389053 AGTGTTGGATTCATAGTCAAAAGAGAC 59.611 37.037 0.00 0.00 38.81 3.36
847 882 7.476667 TGTATTTCGTGCCCTAACAAAATATG 58.523 34.615 0.00 0.00 0.00 1.78
963 998 3.491104 GGAGATTCTATTGGACGCTCGTT 60.491 47.826 0.00 0.00 0.00 3.85
979 1014 1.698874 AGGATTGGGTTGGGGAGATT 58.301 50.000 0.00 0.00 0.00 2.40
981 1016 0.704076 CAAGGATTGGGTTGGGGAGA 59.296 55.000 0.00 0.00 43.94 3.71
993 1029 2.840651 AGTAGTAGCAGGTGCAAGGATT 59.159 45.455 4.48 0.00 45.16 3.01
1000 1036 1.471684 ACACGTAGTAGTAGCAGGTGC 59.528 52.381 0.00 0.00 41.61 5.01
1005 1041 3.937706 GGAGAAGACACGTAGTAGTAGCA 59.062 47.826 0.00 0.00 41.61 3.49
1022 1061 3.553828 AAGAACGTGGTTCAAGGAGAA 57.446 42.857 10.74 0.00 44.11 2.87
1514 1575 1.622607 CCGGCTGTAGGATGTTCCCA 61.623 60.000 0.00 0.00 37.19 4.37
1563 1624 5.856156 TGAACCTGGAATTTACAGTCGTTA 58.144 37.500 7.83 0.00 34.16 3.18
1594 1655 3.755378 ACATGATCAAGGAGCAAACAGAC 59.245 43.478 0.00 0.00 29.85 3.51
1595 1656 4.005650 GACATGATCAAGGAGCAAACAGA 58.994 43.478 0.00 0.00 29.85 3.41
1596 1657 3.128242 GGACATGATCAAGGAGCAAACAG 59.872 47.826 0.00 0.00 29.85 3.16
1598 1659 3.084039 TGGACATGATCAAGGAGCAAAC 58.916 45.455 0.00 0.00 29.85 2.93
1599 1660 3.349927 CTGGACATGATCAAGGAGCAAA 58.650 45.455 0.00 0.00 29.85 3.68
1623 1692 1.277580 CCTTCATGGAGAGGGTGGCT 61.278 60.000 1.24 0.00 38.63 4.75
1689 1766 9.704098 GTCAATATAGACCGAACAAGAAATTTC 57.296 33.333 10.33 10.33 32.36 2.17
1690 1767 9.449719 AGTCAATATAGACCGAACAAGAAATTT 57.550 29.630 0.00 0.00 39.34 1.82
1718 1795 8.124199 TGAAGCAAATTCAAAATTTCTCTTTGC 58.876 29.630 20.99 20.99 45.00 3.68
1749 1830 2.111999 CTTCCTCCGTGGCAACTCCA 62.112 60.000 0.00 0.00 44.18 3.86
1782 1863 4.882559 TCCTTCCCTTCCCGTAATAAGTA 58.117 43.478 0.00 0.00 0.00 2.24
1788 1869 0.544697 GCATCCTTCCCTTCCCGTAA 59.455 55.000 0.00 0.00 0.00 3.18
2046 2127 0.814457 AGCTAGCTCCTCGTGTTCAG 59.186 55.000 12.68 0.00 0.00 3.02
2058 2139 0.249238 CTCGCGAAATGGAGCTAGCT 60.249 55.000 19.45 19.45 0.00 3.32
2062 2143 1.142748 CTCCTCGCGAAATGGAGCT 59.857 57.895 24.60 0.00 40.52 4.09
2120 2201 0.438830 CTACGGTTTGCTTGCGAGTC 59.561 55.000 2.14 0.00 0.00 3.36
2121 2202 0.032952 TCTACGGTTTGCTTGCGAGT 59.967 50.000 2.14 0.00 0.00 4.18
2122 2203 1.136336 GTTCTACGGTTTGCTTGCGAG 60.136 52.381 0.00 0.00 0.00 5.03
2123 2204 0.863144 GTTCTACGGTTTGCTTGCGA 59.137 50.000 0.00 0.00 0.00 5.10
2124 2205 0.584396 TGTTCTACGGTTTGCTTGCG 59.416 50.000 0.00 0.00 0.00 4.85
2125 2206 2.766970 TTGTTCTACGGTTTGCTTGC 57.233 45.000 0.00 0.00 0.00 4.01
2126 2207 4.606961 ACAATTGTTCTACGGTTTGCTTG 58.393 39.130 4.92 0.00 0.00 4.01
2127 2208 4.911514 ACAATTGTTCTACGGTTTGCTT 57.088 36.364 4.92 0.00 0.00 3.91
2128 2209 4.911514 AACAATTGTTCTACGGTTTGCT 57.088 36.364 18.13 0.00 31.64 3.91
2192 2275 7.380065 GGCTGTAGATACTTTAATCTTCGTCTG 59.620 40.741 0.00 0.00 37.41 3.51
2220 2303 0.901827 GGGGTCGGATTTGCCAAATT 59.098 50.000 3.82 0.00 35.94 1.82
2362 2466 3.821600 GGATGAGCTCCACGTAGATTAGA 59.178 47.826 12.15 0.00 44.26 2.10
2563 2676 0.728542 GACGTCCAACAACACCGTTT 59.271 50.000 3.51 0.00 0.00 3.60
2572 2685 0.388520 CATCGCTCTGACGTCCAACA 60.389 55.000 14.12 0.00 0.00 3.33
2574 2687 0.817654 ATCATCGCTCTGACGTCCAA 59.182 50.000 14.12 0.00 0.00 3.53
2595 2708 0.181350 GGCTCGTCCCCAGATGAATT 59.819 55.000 0.00 0.00 37.58 2.17
2598 2711 3.147595 CGGCTCGTCCCCAGATGA 61.148 66.667 0.00 0.00 36.57 2.92
2931 3045 9.263446 ACGGAGGGAGTATAAAATAGCATATTA 57.737 33.333 0.00 0.00 0.00 0.98
2932 3046 8.147244 ACGGAGGGAGTATAAAATAGCATATT 57.853 34.615 0.00 0.00 0.00 1.28
2933 3047 7.147707 GGACGGAGGGAGTATAAAATAGCATAT 60.148 40.741 0.00 0.00 0.00 1.78
2934 3048 6.154021 GGACGGAGGGAGTATAAAATAGCATA 59.846 42.308 0.00 0.00 0.00 3.14
2935 3049 5.046520 GGACGGAGGGAGTATAAAATAGCAT 60.047 44.000 0.00 0.00 0.00 3.79
2936 3050 4.282703 GGACGGAGGGAGTATAAAATAGCA 59.717 45.833 0.00 0.00 0.00 3.49
2937 3051 4.282703 TGGACGGAGGGAGTATAAAATAGC 59.717 45.833 0.00 0.00 0.00 2.97
2938 3052 6.415206 TTGGACGGAGGGAGTATAAAATAG 57.585 41.667 0.00 0.00 0.00 1.73
2939 3053 6.811634 TTTGGACGGAGGGAGTATAAAATA 57.188 37.500 0.00 0.00 0.00 1.40
2940 3054 5.703730 TTTGGACGGAGGGAGTATAAAAT 57.296 39.130 0.00 0.00 0.00 1.82
2941 3055 5.502089 TTTTGGACGGAGGGAGTATAAAA 57.498 39.130 0.00 0.00 0.00 1.52
2942 3056 5.502089 TTTTTGGACGGAGGGAGTATAAA 57.498 39.130 0.00 0.00 0.00 1.40
2943 3057 5.703730 ATTTTTGGACGGAGGGAGTATAA 57.296 39.130 0.00 0.00 0.00 0.98
2944 3058 5.901276 AGTATTTTTGGACGGAGGGAGTATA 59.099 40.000 0.00 0.00 0.00 1.47
2945 3059 4.720273 AGTATTTTTGGACGGAGGGAGTAT 59.280 41.667 0.00 0.00 0.00 2.12
2946 3060 4.098894 AGTATTTTTGGACGGAGGGAGTA 58.901 43.478 0.00 0.00 0.00 2.59
2947 3061 2.910977 AGTATTTTTGGACGGAGGGAGT 59.089 45.455 0.00 0.00 0.00 3.85
2948 3062 3.629142 AGTATTTTTGGACGGAGGGAG 57.371 47.619 0.00 0.00 0.00 4.30
2949 3063 3.073356 ACAAGTATTTTTGGACGGAGGGA 59.927 43.478 0.00 0.00 32.32 4.20
2950 3064 3.418047 ACAAGTATTTTTGGACGGAGGG 58.582 45.455 0.00 0.00 32.32 4.30
2951 3065 4.069304 TGACAAGTATTTTTGGACGGAGG 58.931 43.478 0.00 0.00 32.32 4.30
2952 3066 5.411361 TGATGACAAGTATTTTTGGACGGAG 59.589 40.000 0.00 0.00 32.32 4.63
2953 3067 5.309638 TGATGACAAGTATTTTTGGACGGA 58.690 37.500 0.00 0.00 32.32 4.69
2954 3068 5.621197 TGATGACAAGTATTTTTGGACGG 57.379 39.130 0.00 0.00 32.32 4.79
2955 3069 7.922505 TTTTGATGACAAGTATTTTTGGACG 57.077 32.000 0.00 0.00 37.32 4.79
2956 3070 8.711457 CCATTTTGATGACAAGTATTTTTGGAC 58.289 33.333 0.00 0.00 37.32 4.02
2957 3071 8.646004 TCCATTTTGATGACAAGTATTTTTGGA 58.354 29.630 0.00 0.00 37.32 3.53
2958 3072 8.830201 TCCATTTTGATGACAAGTATTTTTGG 57.170 30.769 0.00 0.00 37.32 3.28
2966 3080 8.096414 CCCTTTTTATCCATTTTGATGACAAGT 58.904 33.333 0.00 0.00 37.32 3.16
2967 3081 8.313292 TCCCTTTTTATCCATTTTGATGACAAG 58.687 33.333 0.00 0.00 37.32 3.16
2968 3082 8.200024 TCCCTTTTTATCCATTTTGATGACAA 57.800 30.769 0.00 0.00 0.00 3.18
2969 3083 7.789202 TCCCTTTTTATCCATTTTGATGACA 57.211 32.000 0.00 0.00 0.00 3.58
2970 3084 8.260114 ACATCCCTTTTTATCCATTTTGATGAC 58.740 33.333 0.00 0.00 32.39 3.06
2971 3085 8.378115 ACATCCCTTTTTATCCATTTTGATGA 57.622 30.769 0.00 0.00 32.39 2.92
2974 3088 9.713684 AGATACATCCCTTTTTATCCATTTTGA 57.286 29.630 0.00 0.00 0.00 2.69
3004 3118 9.796180 AGAGGATGTATCTAGACGTATTTTAGT 57.204 33.333 0.00 0.00 0.00 2.24
3012 3126 9.132923 TGAATAAAAGAGGATGTATCTAGACGT 57.867 33.333 0.00 0.00 0.00 4.34
3035 3149 9.402320 TCCGGAAATACTTATCATCAAAATGAA 57.598 29.630 0.00 0.00 44.85 2.57
3036 3150 8.836413 GTCCGGAAATACTTATCATCAAAATGA 58.164 33.333 5.23 0.00 45.73 2.57
3037 3151 7.798516 CGTCCGGAAATACTTATCATCAAAATG 59.201 37.037 5.23 0.00 0.00 2.32
3038 3152 7.041372 CCGTCCGGAAATACTTATCATCAAAAT 60.041 37.037 5.23 0.00 37.50 1.82
3039 3153 6.259167 CCGTCCGGAAATACTTATCATCAAAA 59.741 38.462 5.23 0.00 37.50 2.44
3040 3154 5.756347 CCGTCCGGAAATACTTATCATCAAA 59.244 40.000 5.23 0.00 37.50 2.69
3041 3155 5.069383 TCCGTCCGGAAATACTTATCATCAA 59.931 40.000 5.23 0.00 42.05 2.57
3042 3156 4.585581 TCCGTCCGGAAATACTTATCATCA 59.414 41.667 5.23 0.00 42.05 3.07
3043 3157 5.130292 TCCGTCCGGAAATACTTATCATC 57.870 43.478 5.23 0.00 42.05 2.92
3044 3158 4.021368 CCTCCGTCCGGAAATACTTATCAT 60.021 45.833 5.23 0.00 44.66 2.45
3045 3159 3.319972 CCTCCGTCCGGAAATACTTATCA 59.680 47.826 5.23 0.00 44.66 2.15
3046 3160 3.305881 CCCTCCGTCCGGAAATACTTATC 60.306 52.174 5.23 0.00 44.66 1.75
3047 3161 2.631545 CCCTCCGTCCGGAAATACTTAT 59.368 50.000 5.23 0.00 44.66 1.73
3048 3162 2.034124 CCCTCCGTCCGGAAATACTTA 58.966 52.381 5.23 0.00 44.66 2.24
3049 3163 0.828677 CCCTCCGTCCGGAAATACTT 59.171 55.000 5.23 0.00 44.66 2.24
3050 3164 0.032813 TCCCTCCGTCCGGAAATACT 60.033 55.000 5.23 0.00 44.66 2.12
3051 3165 0.388294 CTCCCTCCGTCCGGAAATAC 59.612 60.000 5.23 0.00 44.66 1.89
3052 3166 0.032813 ACTCCCTCCGTCCGGAAATA 60.033 55.000 5.23 0.00 44.66 1.40
3053 3167 0.032813 TACTCCCTCCGTCCGGAAAT 60.033 55.000 5.23 0.00 44.66 2.17
3054 3168 0.032813 ATACTCCCTCCGTCCGGAAA 60.033 55.000 5.23 0.00 44.66 3.13
3055 3169 0.754217 CATACTCCCTCCGTCCGGAA 60.754 60.000 5.23 0.00 44.66 4.30
3056 3170 1.152819 CATACTCCCTCCGTCCGGA 60.153 63.158 0.00 0.00 42.90 5.14
3057 3171 1.152819 TCATACTCCCTCCGTCCGG 60.153 63.158 0.00 0.00 0.00 5.14
3058 3172 0.465824 AGTCATACTCCCTCCGTCCG 60.466 60.000 0.00 0.00 0.00 4.79
3059 3173 1.777941 AAGTCATACTCCCTCCGTCC 58.222 55.000 0.00 0.00 0.00 4.79
3060 3174 2.159085 CCAAAGTCATACTCCCTCCGTC 60.159 54.545 0.00 0.00 0.00 4.79
3061 3175 1.831736 CCAAAGTCATACTCCCTCCGT 59.168 52.381 0.00 0.00 0.00 4.69
3062 3176 1.139058 CCCAAAGTCATACTCCCTCCG 59.861 57.143 0.00 0.00 0.00 4.63
3063 3177 1.490910 CCCCAAAGTCATACTCCCTCC 59.509 57.143 0.00 0.00 0.00 4.30
3064 3178 2.170817 GTCCCCAAAGTCATACTCCCTC 59.829 54.545 0.00 0.00 0.00 4.30
3065 3179 2.197465 GTCCCCAAAGTCATACTCCCT 58.803 52.381 0.00 0.00 0.00 4.20
3066 3180 2.197465 AGTCCCCAAAGTCATACTCCC 58.803 52.381 0.00 0.00 0.00 4.30
3067 3181 4.383880 GGTTAGTCCCCAAAGTCATACTCC 60.384 50.000 0.00 0.00 0.00 3.85
3068 3182 4.470304 AGGTTAGTCCCCAAAGTCATACTC 59.530 45.833 0.00 0.00 36.75 2.59
3069 3183 4.436079 AGGTTAGTCCCCAAAGTCATACT 58.564 43.478 0.00 0.00 36.75 2.12
3070 3184 4.838904 AGGTTAGTCCCCAAAGTCATAC 57.161 45.455 0.00 0.00 36.75 2.39
3071 3185 8.488668 GTTAATAGGTTAGTCCCCAAAGTCATA 58.511 37.037 0.00 0.00 36.75 2.15
3072 3186 7.344134 GTTAATAGGTTAGTCCCCAAAGTCAT 58.656 38.462 0.00 0.00 36.75 3.06
3073 3187 6.296605 GGTTAATAGGTTAGTCCCCAAAGTCA 60.297 42.308 0.00 0.00 36.75 3.41
3074 3188 6.069789 AGGTTAATAGGTTAGTCCCCAAAGTC 60.070 42.308 0.00 0.00 36.75 3.01
3075 3189 5.794289 AGGTTAATAGGTTAGTCCCCAAAGT 59.206 40.000 0.00 0.00 36.75 2.66
3076 3190 6.323210 AGGTTAATAGGTTAGTCCCCAAAG 57.677 41.667 0.00 0.00 36.75 2.77
3077 3191 7.198332 TCTAGGTTAATAGGTTAGTCCCCAAA 58.802 38.462 0.00 0.00 36.75 3.28
3078 3192 6.755224 TCTAGGTTAATAGGTTAGTCCCCAA 58.245 40.000 0.00 0.00 36.75 4.12
3079 3193 6.359873 TCTAGGTTAATAGGTTAGTCCCCA 57.640 41.667 0.00 0.00 36.75 4.96
3080 3194 5.245751 GCTCTAGGTTAATAGGTTAGTCCCC 59.754 48.000 0.00 0.00 36.75 4.81
3081 3195 5.245751 GGCTCTAGGTTAATAGGTTAGTCCC 59.754 48.000 0.00 0.00 36.75 4.46
3082 3196 5.245751 GGGCTCTAGGTTAATAGGTTAGTCC 59.754 48.000 0.00 0.00 0.00 3.85
3083 3197 5.837438 TGGGCTCTAGGTTAATAGGTTAGTC 59.163 44.000 0.00 0.00 0.00 2.59
3084 3198 5.785123 TGGGCTCTAGGTTAATAGGTTAGT 58.215 41.667 0.00 0.00 0.00 2.24
3085 3199 5.839606 ACTGGGCTCTAGGTTAATAGGTTAG 59.160 44.000 0.00 0.00 0.00 2.34
3086 3200 5.601313 CACTGGGCTCTAGGTTAATAGGTTA 59.399 44.000 0.00 0.00 0.00 2.85
3087 3201 4.409247 CACTGGGCTCTAGGTTAATAGGTT 59.591 45.833 0.00 0.00 0.00 3.50
3088 3202 3.967987 CACTGGGCTCTAGGTTAATAGGT 59.032 47.826 0.00 0.00 0.00 3.08
3089 3203 3.244249 GCACTGGGCTCTAGGTTAATAGG 60.244 52.174 0.00 0.00 40.25 2.57
3090 3204 3.244249 GGCACTGGGCTCTAGGTTAATAG 60.244 52.174 0.21 0.00 44.01 1.73
3091 3205 2.704065 GGCACTGGGCTCTAGGTTAATA 59.296 50.000 0.21 0.00 44.01 0.98
3092 3206 1.490910 GGCACTGGGCTCTAGGTTAAT 59.509 52.381 0.21 0.00 44.01 1.40
3093 3207 0.909623 GGCACTGGGCTCTAGGTTAA 59.090 55.000 0.21 0.00 44.01 2.01
3094 3208 0.252513 TGGCACTGGGCTCTAGGTTA 60.253 55.000 0.21 0.00 44.01 2.85
3095 3209 1.538876 TGGCACTGGGCTCTAGGTT 60.539 57.895 0.21 0.00 44.01 3.50
3096 3210 2.122729 TGGCACTGGGCTCTAGGT 59.877 61.111 0.21 0.00 44.01 3.08
3097 3211 1.557269 AAGTGGCACTGGGCTCTAGG 61.557 60.000 22.83 0.00 41.85 3.02
3098 3212 0.107945 GAAGTGGCACTGGGCTCTAG 60.108 60.000 22.83 0.00 41.85 2.43
3099 3213 1.553690 GGAAGTGGCACTGGGCTCTA 61.554 60.000 22.83 0.00 41.85 2.43
3100 3214 2.753029 GAAGTGGCACTGGGCTCT 59.247 61.111 22.83 3.49 44.18 4.09
3101 3215 2.360475 GGAAGTGGCACTGGGCTC 60.360 66.667 22.83 14.57 44.01 4.70
3102 3216 2.856000 AGGAAGTGGCACTGGGCT 60.856 61.111 22.83 4.82 44.01 5.19
3103 3217 2.674380 CAGGAAGTGGCACTGGGC 60.674 66.667 22.83 13.45 43.74 5.36
3104 3218 0.468029 AAACAGGAAGTGGCACTGGG 60.468 55.000 22.83 13.11 36.57 4.45
3105 3219 1.402787 AAAACAGGAAGTGGCACTGG 58.597 50.000 22.83 13.47 36.57 4.00
3123 3237 8.842280 TCTGCGAAACTCTAAAATAAGGAAAAA 58.158 29.630 0.00 0.00 0.00 1.94
3124 3238 8.385898 TCTGCGAAACTCTAAAATAAGGAAAA 57.614 30.769 0.00 0.00 0.00 2.29
3125 3239 7.972832 TCTGCGAAACTCTAAAATAAGGAAA 57.027 32.000 0.00 0.00 0.00 3.13
3126 3240 7.972832 TTCTGCGAAACTCTAAAATAAGGAA 57.027 32.000 0.00 0.00 0.00 3.36
3127 3241 7.972832 TTTCTGCGAAACTCTAAAATAAGGA 57.027 32.000 0.00 0.00 0.00 3.36
3128 3242 7.750903 CCTTTTCTGCGAAACTCTAAAATAAGG 59.249 37.037 3.71 0.00 0.00 2.69
3129 3243 8.504005 TCCTTTTCTGCGAAACTCTAAAATAAG 58.496 33.333 3.71 0.00 0.00 1.73
3130 3244 8.385898 TCCTTTTCTGCGAAACTCTAAAATAA 57.614 30.769 3.71 0.00 0.00 1.40
3131 3245 7.972832 TCCTTTTCTGCGAAACTCTAAAATA 57.027 32.000 3.71 0.00 0.00 1.40
3132 3246 6.877611 TCCTTTTCTGCGAAACTCTAAAAT 57.122 33.333 3.71 0.00 0.00 1.82
3133 3247 6.687081 TTCCTTTTCTGCGAAACTCTAAAA 57.313 33.333 3.71 0.00 0.00 1.52
3134 3248 6.877611 ATTCCTTTTCTGCGAAACTCTAAA 57.122 33.333 3.71 0.00 0.00 1.85
3135 3249 6.370718 GGTATTCCTTTTCTGCGAAACTCTAA 59.629 38.462 3.71 0.00 0.00 2.10
3136 3250 5.873164 GGTATTCCTTTTCTGCGAAACTCTA 59.127 40.000 3.71 0.00 0.00 2.43
3137 3251 4.695928 GGTATTCCTTTTCTGCGAAACTCT 59.304 41.667 3.71 0.00 0.00 3.24
3138 3252 4.454504 TGGTATTCCTTTTCTGCGAAACTC 59.545 41.667 3.71 0.00 34.23 3.01
3139 3253 4.394729 TGGTATTCCTTTTCTGCGAAACT 58.605 39.130 3.71 0.00 34.23 2.66
3140 3254 4.759516 TGGTATTCCTTTTCTGCGAAAC 57.240 40.909 3.71 0.00 34.23 2.78
3141 3255 5.525199 GTTTGGTATTCCTTTTCTGCGAAA 58.475 37.500 0.00 0.55 34.23 3.46
3142 3256 4.319911 CGTTTGGTATTCCTTTTCTGCGAA 60.320 41.667 0.00 0.00 34.23 4.70
3143 3257 3.187637 CGTTTGGTATTCCTTTTCTGCGA 59.812 43.478 0.00 0.00 34.23 5.10
3144 3258 3.187637 TCGTTTGGTATTCCTTTTCTGCG 59.812 43.478 0.00 0.00 34.23 5.18
3145 3259 4.759516 TCGTTTGGTATTCCTTTTCTGC 57.240 40.909 0.00 0.00 34.23 4.26
3146 3260 6.313744 ACTTCGTTTGGTATTCCTTTTCTG 57.686 37.500 0.00 0.00 34.23 3.02
3147 3261 5.472478 GGACTTCGTTTGGTATTCCTTTTCT 59.528 40.000 0.00 0.00 34.23 2.52
3148 3262 5.239963 TGGACTTCGTTTGGTATTCCTTTTC 59.760 40.000 0.00 0.00 34.23 2.29
3149 3263 5.134661 TGGACTTCGTTTGGTATTCCTTTT 58.865 37.500 0.00 0.00 34.23 2.27
3150 3264 4.721132 TGGACTTCGTTTGGTATTCCTTT 58.279 39.130 0.00 0.00 34.23 3.11
3151 3265 4.360951 TGGACTTCGTTTGGTATTCCTT 57.639 40.909 0.00 0.00 34.23 3.36
3152 3266 4.360951 TTGGACTTCGTTTGGTATTCCT 57.639 40.909 0.00 0.00 34.23 3.36
3153 3267 5.399013 CATTTGGACTTCGTTTGGTATTCC 58.601 41.667 0.00 0.00 0.00 3.01
3154 3268 5.182380 TCCATTTGGACTTCGTTTGGTATTC 59.818 40.000 0.00 0.00 39.78 1.75
3155 3269 5.074115 TCCATTTGGACTTCGTTTGGTATT 58.926 37.500 0.00 0.00 39.78 1.89
3156 3270 4.658063 TCCATTTGGACTTCGTTTGGTAT 58.342 39.130 0.00 0.00 39.78 2.73
3157 3271 4.088056 TCCATTTGGACTTCGTTTGGTA 57.912 40.909 0.00 0.00 39.78 3.25
3158 3272 2.938838 TCCATTTGGACTTCGTTTGGT 58.061 42.857 0.00 0.00 39.78 3.67
3159 3273 4.022416 TCATTCCATTTGGACTTCGTTTGG 60.022 41.667 0.00 0.00 45.39 3.28
3160 3274 5.119931 TCATTCCATTTGGACTTCGTTTG 57.880 39.130 0.00 0.00 45.39 2.93
3161 3275 5.782893 TTCATTCCATTTGGACTTCGTTT 57.217 34.783 0.00 0.00 45.39 3.60
3162 3276 5.301805 AGTTTCATTCCATTTGGACTTCGTT 59.698 36.000 0.00 0.00 45.39 3.85
3163 3277 4.827284 AGTTTCATTCCATTTGGACTTCGT 59.173 37.500 0.00 0.00 45.39 3.85
3164 3278 5.376854 AGTTTCATTCCATTTGGACTTCG 57.623 39.130 0.00 0.00 45.39 3.79
3165 3279 7.169813 GTGAAAGTTTCATTCCATTTGGACTTC 59.830 37.037 20.72 0.00 42.47 3.01
3166 3280 6.986231 GTGAAAGTTTCATTCCATTTGGACTT 59.014 34.615 20.72 0.00 42.47 3.01
3167 3281 6.515832 GTGAAAGTTTCATTCCATTTGGACT 58.484 36.000 20.72 0.00 42.47 3.85
3168 3282 6.769608 GTGAAAGTTTCATTCCATTTGGAC 57.230 37.500 20.72 0.64 42.47 4.02


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.