Multiple sequence alignment - TraesCS2A01G200300

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS2A01G200300 chr2A 100.000 6006 0 0 1 6006 173132602 173126597 0.000000e+00 11092
1 TraesCS2A01G200300 chr2A 92.000 75 6 0 5612 5686 173126921 173126847 8.230000e-19 106
2 TraesCS2A01G200300 chr2A 92.000 75 6 0 5682 5756 173126991 173126917 8.230000e-19 106
3 TraesCS2A01G200300 chr2B 91.315 2844 146 38 2529 5336 221488475 221485697 0.000000e+00 3790
4 TraesCS2A01G200300 chr2B 90.361 1494 72 18 625 2097 221490478 221489036 0.000000e+00 1895
5 TraesCS2A01G200300 chr2B 97.468 395 9 1 2137 2530 221488949 221488555 0.000000e+00 673
6 TraesCS2A01G200300 chr2B 94.529 329 15 3 5679 6006 221484560 221484234 6.950000e-139 505
7 TraesCS2A01G200300 chr2B 88.068 352 14 5 280 614 221490801 221490461 5.640000e-105 392
8 TraesCS2A01G200300 chr2B 95.135 185 6 2 5502 5686 221484666 221484485 7.620000e-74 289
9 TraesCS2A01G200300 chr2B 88.571 140 8 2 36 167 221490928 221490789 4.820000e-36 163
10 TraesCS2A01G200300 chr2D 94.588 2402 87 14 2073 4440 162159569 162157177 0.000000e+00 3675
11 TraesCS2A01G200300 chr2D 94.191 1446 58 10 625 2058 162161185 162159754 0.000000e+00 2182
12 TraesCS2A01G200300 chr2D 90.448 848 39 11 4503 5339 162157167 162156351 0.000000e+00 1079
13 TraesCS2A01G200300 chr2D 95.441 329 12 3 5679 6006 162156184 162155858 6.900000e-144 521
14 TraesCS2A01G200300 chr2D 94.286 245 14 0 5442 5686 162156351 162156107 5.680000e-100 375
15 TraesCS2A01G200300 chr2D 91.971 274 10 2 280 547 162161475 162161208 2.040000e-99 374
16 TraesCS2A01G200300 chr2D 94.783 115 6 0 5337 5451 5235201 5235087 4.780000e-41 180
17 TraesCS2A01G200300 chr2D 93.333 120 6 2 5332 5451 73968052 73968169 6.190000e-40 176
18 TraesCS2A01G200300 chr2D 92.562 121 9 0 163 283 53792245 53792365 2.230000e-39 174
19 TraesCS2A01G200300 chr5A 95.614 114 4 1 5333 5446 537119789 537119677 1.330000e-41 182
20 TraesCS2A01G200300 chr5A 92.742 124 5 3 5333 5453 573562622 573562500 6.190000e-40 176
21 TraesCS2A01G200300 chr3A 93.496 123 6 2 5335 5455 51447865 51447987 1.330000e-41 182
22 TraesCS2A01G200300 chr6D 95.536 112 5 0 5337 5448 79857212 79857101 4.780000e-41 180
23 TraesCS2A01G200300 chr6D 94.017 117 6 1 163 279 14616051 14616166 6.190000e-40 176
24 TraesCS2A01G200300 chr5D 94.737 114 5 1 5332 5445 454118320 454118432 6.190000e-40 176
25 TraesCS2A01G200300 chr7D 93.966 116 6 1 165 280 425099257 425099371 2.230000e-39 174
26 TraesCS2A01G200300 chr7D 91.803 122 9 1 163 283 29789340 29789461 1.040000e-37 169
27 TraesCS2A01G200300 chr3D 92.562 121 8 1 163 283 41272455 41272574 8.000000e-39 172
28 TraesCS2A01G200300 chr3D 91.870 123 9 1 5333 5455 1118981 1118860 2.880000e-38 171
29 TraesCS2A01G200300 chr3D 91.870 123 8 2 163 285 5039997 5039877 2.880000e-38 171
30 TraesCS2A01G200300 chr3D 92.437 119 9 0 163 281 582706269 582706387 2.880000e-38 171
31 TraesCS2A01G200300 chr3B 91.935 124 8 2 163 285 500304241 500304363 8.000000e-39 172
32 TraesCS2A01G200300 chr4D 92.500 120 8 1 163 282 47728824 47728706 2.880000e-38 171
33 TraesCS2A01G200300 chr4B 91.870 123 7 3 5338 5460 315065479 315065360 1.040000e-37 169


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS2A01G200300 chr2A 173126597 173132602 6005 True 11092.000000 11092 100.000000 1 6006 1 chr2A.!!$R1 6005
1 TraesCS2A01G200300 chr2B 221484234 221490928 6694 True 1101.000000 3790 92.206714 36 6006 7 chr2B.!!$R1 5970
2 TraesCS2A01G200300 chr2D 162155858 162161475 5617 True 1367.666667 3675 93.487500 280 6006 6 chr2D.!!$R2 5726

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
33 34 0.037590 ACATTATGTGTGCCACGGGT 59.962 50.0 0.00 0.00 40.28 5.28 F
178 187 0.038159 AGGCAGTGCTTGTAGTCGTC 60.038 55.0 16.11 0.00 0.00 4.20 F
196 205 0.182061 TCGCTAGGTGGTCTACGGAT 59.818 55.0 0.00 0.00 0.00 4.18 F
664 690 0.531311 AACAAGGGACCGTCGTTCAC 60.531 55.0 0.00 0.00 0.00 3.18 F
1565 1592 0.323725 AAGCTGTAAGTGCCCATGGG 60.324 55.0 27.87 27.87 35.30 4.00 F
2563 2902 1.726853 CACCTGCCTGTGTAGTTAGC 58.273 55.0 0.00 0.00 0.00 3.09 F
3104 3443 0.609131 AAGCAGCAACCCGCATAAGT 60.609 50.0 0.00 0.00 46.13 2.24 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1110 1136 0.107703 GGCTGTGCTGCTGTGGTATA 60.108 55.000 0.00 0.00 0.00 1.47 R
1202 1229 0.179076 CTATGCAGTCATGGCGACCA 60.179 55.000 0.00 1.01 46.69 4.02 R
1240 1267 0.389817 TCAGCCAATCGGTCGAACAG 60.390 55.000 0.00 0.00 33.28 3.16 R
2008 2048 1.132657 TCCAACCAGTAAGACCCAGGA 60.133 52.381 0.00 0.00 0.00 3.86 R
2908 3247 0.179116 CCTGAGTCGATGCAGGTGAG 60.179 60.000 21.78 3.70 45.21 3.51 R
3504 3851 0.238817 CGTAGAGGCGATCCTGTAGC 59.761 60.000 0.00 0.00 44.46 3.58 R
5063 5428 0.179018 AAACTTCCCTCGCTGCAACT 60.179 50.000 0.00 0.00 0.00 3.16 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
18 19 3.855159 GGTCTCAGGGCGTTACATT 57.145 52.632 0.00 0.00 0.00 2.71
19 20 2.973694 GGTCTCAGGGCGTTACATTA 57.026 50.000 0.00 0.00 0.00 1.90
20 21 3.470645 GGTCTCAGGGCGTTACATTAT 57.529 47.619 0.00 0.00 0.00 1.28
21 22 3.131396 GGTCTCAGGGCGTTACATTATG 58.869 50.000 0.00 0.00 0.00 1.90
22 23 3.431766 GGTCTCAGGGCGTTACATTATGT 60.432 47.826 2.58 2.58 0.00 2.29
23 24 3.555956 GTCTCAGGGCGTTACATTATGTG 59.444 47.826 8.26 0.00 0.00 3.21
24 25 3.196901 TCTCAGGGCGTTACATTATGTGT 59.803 43.478 8.26 0.00 44.95 3.72
25 26 3.266636 TCAGGGCGTTACATTATGTGTG 58.733 45.455 8.26 0.00 42.24 3.82
26 27 2.014128 AGGGCGTTACATTATGTGTGC 58.986 47.619 8.26 8.65 42.24 4.57
27 28 1.064952 GGGCGTTACATTATGTGTGCC 59.935 52.381 21.07 21.07 42.24 5.01
28 29 1.740585 GGCGTTACATTATGTGTGCCA 59.259 47.619 22.96 0.00 42.24 4.92
29 30 2.477189 GGCGTTACATTATGTGTGCCAC 60.477 50.000 22.96 7.51 42.24 5.01
30 31 2.786360 GCGTTACATTATGTGTGCCACG 60.786 50.000 8.26 9.18 42.24 4.94
31 32 2.222931 CGTTACATTATGTGTGCCACGG 60.223 50.000 8.26 0.00 42.24 4.94
32 33 2.031258 TACATTATGTGTGCCACGGG 57.969 50.000 8.26 0.00 42.24 5.28
33 34 0.037590 ACATTATGTGTGCCACGGGT 59.962 50.000 0.00 0.00 40.28 5.28
34 35 0.451383 CATTATGTGTGCCACGGGTG 59.549 55.000 0.00 0.00 37.14 4.61
43 44 2.429930 CCACGGGTGGTGTCATGT 59.570 61.111 9.72 0.00 45.52 3.21
55 56 2.356125 GGTGTCATGTAAGGAGGCATGT 60.356 50.000 0.00 0.00 42.09 3.21
90 91 1.952296 GCCTCGGATGCAAATGAAGAT 59.048 47.619 0.00 0.00 0.00 2.40
105 106 6.415206 AATGAAGATAATGAAGCCAATGGG 57.585 37.500 0.00 0.00 37.18 4.00
116 125 0.750911 GCCAATGGGAGAGGAAGCAG 60.751 60.000 0.00 0.00 35.59 4.24
141 150 5.105473 CCCATGAAGAATTGAAGATGCAAGT 60.105 40.000 0.00 0.00 0.00 3.16
151 160 5.868043 TGAAGATGCAAGTACAAGTGATG 57.132 39.130 0.00 0.00 0.00 3.07
152 161 5.550290 TGAAGATGCAAGTACAAGTGATGA 58.450 37.500 0.00 0.00 0.00 2.92
153 162 6.175471 TGAAGATGCAAGTACAAGTGATGAT 58.825 36.000 0.00 0.00 0.00 2.45
154 163 7.330262 TGAAGATGCAAGTACAAGTGATGATA 58.670 34.615 0.00 0.00 0.00 2.15
155 164 7.823799 TGAAGATGCAAGTACAAGTGATGATAA 59.176 33.333 0.00 0.00 0.00 1.75
156 165 8.743085 AAGATGCAAGTACAAGTGATGATAAT 57.257 30.769 0.00 0.00 0.00 1.28
157 166 8.151141 AGATGCAAGTACAAGTGATGATAATG 57.849 34.615 0.00 0.00 0.00 1.90
158 167 7.989170 AGATGCAAGTACAAGTGATGATAATGA 59.011 33.333 0.00 0.00 0.00 2.57
159 168 7.920160 TGCAAGTACAAGTGATGATAATGAA 57.080 32.000 0.00 0.00 0.00 2.57
160 169 7.977904 TGCAAGTACAAGTGATGATAATGAAG 58.022 34.615 0.00 0.00 0.00 3.02
161 170 7.066163 TGCAAGTACAAGTGATGATAATGAAGG 59.934 37.037 0.00 0.00 0.00 3.46
162 171 7.412853 CAAGTACAAGTGATGATAATGAAGGC 58.587 38.462 0.00 0.00 0.00 4.35
163 172 6.653020 AGTACAAGTGATGATAATGAAGGCA 58.347 36.000 0.00 0.00 0.00 4.75
164 173 6.765036 AGTACAAGTGATGATAATGAAGGCAG 59.235 38.462 0.00 0.00 0.00 4.85
165 174 5.503927 ACAAGTGATGATAATGAAGGCAGT 58.496 37.500 0.00 0.00 0.00 4.40
166 175 5.356190 ACAAGTGATGATAATGAAGGCAGTG 59.644 40.000 0.00 0.00 0.00 3.66
167 176 3.881688 AGTGATGATAATGAAGGCAGTGC 59.118 43.478 6.55 6.55 0.00 4.40
168 177 3.881688 GTGATGATAATGAAGGCAGTGCT 59.118 43.478 16.11 0.00 0.00 4.40
169 178 4.337555 GTGATGATAATGAAGGCAGTGCTT 59.662 41.667 16.11 3.91 0.00 3.91
170 179 4.337274 TGATGATAATGAAGGCAGTGCTTG 59.663 41.667 16.11 0.00 0.00 4.01
171 180 3.689347 TGATAATGAAGGCAGTGCTTGT 58.311 40.909 16.11 0.00 0.00 3.16
172 181 4.842574 TGATAATGAAGGCAGTGCTTGTA 58.157 39.130 16.11 0.21 0.00 2.41
173 182 4.877823 TGATAATGAAGGCAGTGCTTGTAG 59.122 41.667 16.11 0.00 0.00 2.74
174 183 2.867109 ATGAAGGCAGTGCTTGTAGT 57.133 45.000 16.11 0.00 0.00 2.73
175 184 2.169832 TGAAGGCAGTGCTTGTAGTC 57.830 50.000 16.11 2.20 0.00 2.59
176 185 1.071605 GAAGGCAGTGCTTGTAGTCG 58.928 55.000 16.11 0.00 0.00 4.18
177 186 0.393077 AAGGCAGTGCTTGTAGTCGT 59.607 50.000 16.11 0.00 0.00 4.34
178 187 0.038159 AGGCAGTGCTTGTAGTCGTC 60.038 55.000 16.11 0.00 0.00 4.20
179 188 1.344942 GGCAGTGCTTGTAGTCGTCG 61.345 60.000 16.11 0.00 0.00 5.12
180 189 1.945776 GCAGTGCTTGTAGTCGTCGC 61.946 60.000 8.18 0.00 0.00 5.19
181 190 0.387367 CAGTGCTTGTAGTCGTCGCT 60.387 55.000 0.00 0.00 0.00 4.93
182 191 1.135774 CAGTGCTTGTAGTCGTCGCTA 60.136 52.381 0.00 0.00 0.00 4.26
183 192 1.130749 AGTGCTTGTAGTCGTCGCTAG 59.869 52.381 0.00 0.00 0.00 3.42
184 193 0.450583 TGCTTGTAGTCGTCGCTAGG 59.549 55.000 0.00 0.00 0.00 3.02
185 194 0.450983 GCTTGTAGTCGTCGCTAGGT 59.549 55.000 0.00 0.00 0.00 3.08
186 195 1.794437 GCTTGTAGTCGTCGCTAGGTG 60.794 57.143 0.00 0.00 0.00 4.00
187 196 0.806868 TTGTAGTCGTCGCTAGGTGG 59.193 55.000 0.00 0.00 0.00 4.61
188 197 0.321919 TGTAGTCGTCGCTAGGTGGT 60.322 55.000 0.00 0.00 0.00 4.16
189 198 0.376502 GTAGTCGTCGCTAGGTGGTC 59.623 60.000 0.00 0.00 0.00 4.02
190 199 0.251354 TAGTCGTCGCTAGGTGGTCT 59.749 55.000 0.00 0.00 0.00 3.85
191 200 0.251354 AGTCGTCGCTAGGTGGTCTA 59.749 55.000 0.00 0.00 0.00 2.59
192 201 0.376502 GTCGTCGCTAGGTGGTCTAC 59.623 60.000 0.00 0.00 0.00 2.59
193 202 1.086067 TCGTCGCTAGGTGGTCTACG 61.086 60.000 0.00 0.00 0.00 3.51
194 203 1.726265 GTCGCTAGGTGGTCTACGG 59.274 63.158 0.00 0.00 0.00 4.02
195 204 0.745845 GTCGCTAGGTGGTCTACGGA 60.746 60.000 0.00 0.00 0.00 4.69
196 205 0.182061 TCGCTAGGTGGTCTACGGAT 59.818 55.000 0.00 0.00 0.00 4.18
197 206 1.417517 TCGCTAGGTGGTCTACGGATA 59.582 52.381 0.00 0.00 0.00 2.59
198 207 2.039480 TCGCTAGGTGGTCTACGGATAT 59.961 50.000 0.00 0.00 0.00 1.63
199 208 2.161808 CGCTAGGTGGTCTACGGATATG 59.838 54.545 0.00 0.00 0.00 1.78
200 209 2.492484 GCTAGGTGGTCTACGGATATGG 59.508 54.545 0.00 0.00 0.00 2.74
201 210 3.813240 GCTAGGTGGTCTACGGATATGGA 60.813 52.174 0.00 0.00 0.00 3.41
202 211 3.544698 AGGTGGTCTACGGATATGGAT 57.455 47.619 0.00 0.00 0.00 3.41
203 212 3.165875 AGGTGGTCTACGGATATGGATG 58.834 50.000 0.00 0.00 0.00 3.51
204 213 2.897969 GGTGGTCTACGGATATGGATGT 59.102 50.000 0.00 0.00 0.00 3.06
205 214 4.084287 GGTGGTCTACGGATATGGATGTA 58.916 47.826 0.00 0.00 0.00 2.29
206 215 4.525487 GGTGGTCTACGGATATGGATGTAA 59.475 45.833 0.00 0.00 0.00 2.41
207 216 5.187186 GGTGGTCTACGGATATGGATGTAAT 59.813 44.000 0.00 0.00 0.00 1.89
208 217 6.295688 GGTGGTCTACGGATATGGATGTAATT 60.296 42.308 0.00 0.00 0.00 1.40
209 218 7.159372 GTGGTCTACGGATATGGATGTAATTT 58.841 38.462 0.00 0.00 0.00 1.82
210 219 7.660208 GTGGTCTACGGATATGGATGTAATTTT 59.340 37.037 0.00 0.00 0.00 1.82
211 220 8.215050 TGGTCTACGGATATGGATGTAATTTTT 58.785 33.333 0.00 0.00 0.00 1.94
212 221 8.504005 GGTCTACGGATATGGATGTAATTTTTG 58.496 37.037 0.00 0.00 0.00 2.44
213 222 9.052759 GTCTACGGATATGGATGTAATTTTTGT 57.947 33.333 0.00 0.00 0.00 2.83
214 223 9.621629 TCTACGGATATGGATGTAATTTTTGTT 57.378 29.630 0.00 0.00 0.00 2.83
217 226 8.966868 ACGGATATGGATGTAATTTTTGTTTCT 58.033 29.630 0.00 0.00 0.00 2.52
218 227 9.236691 CGGATATGGATGTAATTTTTGTTTCTG 57.763 33.333 0.00 0.00 0.00 3.02
219 228 9.533253 GGATATGGATGTAATTTTTGTTTCTGG 57.467 33.333 0.00 0.00 0.00 3.86
221 230 9.874205 ATATGGATGTAATTTTTGTTTCTGGTG 57.126 29.630 0.00 0.00 0.00 4.17
222 231 7.118496 TGGATGTAATTTTTGTTTCTGGTGT 57.882 32.000 0.00 0.00 0.00 4.16
223 232 7.560368 TGGATGTAATTTTTGTTTCTGGTGTT 58.440 30.769 0.00 0.00 0.00 3.32
224 233 8.043710 TGGATGTAATTTTTGTTTCTGGTGTTT 58.956 29.630 0.00 0.00 0.00 2.83
225 234 8.334632 GGATGTAATTTTTGTTTCTGGTGTTTG 58.665 33.333 0.00 0.00 0.00 2.93
226 235 8.785329 ATGTAATTTTTGTTTCTGGTGTTTGT 57.215 26.923 0.00 0.00 0.00 2.83
227 236 8.608844 TGTAATTTTTGTTTCTGGTGTTTGTT 57.391 26.923 0.00 0.00 0.00 2.83
228 237 8.499162 TGTAATTTTTGTTTCTGGTGTTTGTTG 58.501 29.630 0.00 0.00 0.00 3.33
229 238 7.503521 AATTTTTGTTTCTGGTGTTTGTTGT 57.496 28.000 0.00 0.00 0.00 3.32
230 239 8.608844 AATTTTTGTTTCTGGTGTTTGTTGTA 57.391 26.923 0.00 0.00 0.00 2.41
231 240 8.785329 ATTTTTGTTTCTGGTGTTTGTTGTAT 57.215 26.923 0.00 0.00 0.00 2.29
232 241 8.608844 TTTTTGTTTCTGGTGTTTGTTGTATT 57.391 26.923 0.00 0.00 0.00 1.89
233 242 7.588143 TTTGTTTCTGGTGTTTGTTGTATTG 57.412 32.000 0.00 0.00 0.00 1.90
234 243 5.105752 TGTTTCTGGTGTTTGTTGTATTGC 58.894 37.500 0.00 0.00 0.00 3.56
235 244 4.314740 TTCTGGTGTTTGTTGTATTGCC 57.685 40.909 0.00 0.00 0.00 4.52
236 245 3.291584 TCTGGTGTTTGTTGTATTGCCA 58.708 40.909 0.00 0.00 0.00 4.92
237 246 3.894427 TCTGGTGTTTGTTGTATTGCCAT 59.106 39.130 0.00 0.00 0.00 4.40
238 247 3.987547 TGGTGTTTGTTGTATTGCCATG 58.012 40.909 0.00 0.00 0.00 3.66
239 248 3.638627 TGGTGTTTGTTGTATTGCCATGA 59.361 39.130 0.00 0.00 0.00 3.07
240 249 4.282957 TGGTGTTTGTTGTATTGCCATGAT 59.717 37.500 0.00 0.00 0.00 2.45
241 250 4.864247 GGTGTTTGTTGTATTGCCATGATC 59.136 41.667 0.00 0.00 0.00 2.92
242 251 4.558470 GTGTTTGTTGTATTGCCATGATCG 59.442 41.667 0.00 0.00 0.00 3.69
243 252 4.457257 TGTTTGTTGTATTGCCATGATCGA 59.543 37.500 0.00 0.00 0.00 3.59
244 253 5.048434 TGTTTGTTGTATTGCCATGATCGAA 60.048 36.000 0.00 0.00 0.00 3.71
245 254 5.635417 TTGTTGTATTGCCATGATCGAAA 57.365 34.783 0.00 0.00 0.00 3.46
246 255 5.635417 TGTTGTATTGCCATGATCGAAAA 57.365 34.783 0.00 0.00 0.00 2.29
247 256 6.206395 TGTTGTATTGCCATGATCGAAAAT 57.794 33.333 0.00 0.00 0.00 1.82
248 257 6.035217 TGTTGTATTGCCATGATCGAAAATG 58.965 36.000 0.00 0.00 0.00 2.32
249 258 6.127786 TGTTGTATTGCCATGATCGAAAATGA 60.128 34.615 11.23 0.00 0.00 2.57
250 259 6.448207 TGTATTGCCATGATCGAAAATGAA 57.552 33.333 11.23 1.22 0.00 2.57
251 260 7.041635 TGTATTGCCATGATCGAAAATGAAT 57.958 32.000 11.23 7.28 0.00 2.57
252 261 8.164058 TGTATTGCCATGATCGAAAATGAATA 57.836 30.769 11.23 6.53 0.00 1.75
253 262 8.291740 TGTATTGCCATGATCGAAAATGAATAG 58.708 33.333 11.23 0.00 0.00 1.73
254 263 6.940831 TTGCCATGATCGAAAATGAATAGA 57.059 33.333 11.23 0.00 0.00 1.98
255 264 7.514784 TTGCCATGATCGAAAATGAATAGAT 57.485 32.000 11.23 0.00 0.00 1.98
256 265 7.514784 TGCCATGATCGAAAATGAATAGATT 57.485 32.000 11.23 0.00 0.00 2.40
257 266 7.364970 TGCCATGATCGAAAATGAATAGATTG 58.635 34.615 11.23 0.00 0.00 2.67
258 267 6.805271 GCCATGATCGAAAATGAATAGATTGG 59.195 38.462 11.23 0.00 0.00 3.16
259 268 7.308770 GCCATGATCGAAAATGAATAGATTGGA 60.309 37.037 11.23 0.00 0.00 3.53
260 269 8.570488 CCATGATCGAAAATGAATAGATTGGAA 58.430 33.333 11.23 0.00 0.00 3.53
261 270 9.608617 CATGATCGAAAATGAATAGATTGGAAG 57.391 33.333 5.04 0.00 0.00 3.46
262 271 8.737168 TGATCGAAAATGAATAGATTGGAAGT 57.263 30.769 0.00 0.00 0.00 3.01
263 272 9.177608 TGATCGAAAATGAATAGATTGGAAGTT 57.822 29.630 0.00 0.00 0.00 2.66
337 363 3.745975 TGTGCTATGCTTGTAGTTGTGTC 59.254 43.478 0.00 0.00 0.00 3.67
375 401 5.403466 CACTATGCTTTGCTTTTGAAGTTCC 59.597 40.000 0.00 0.00 0.00 3.62
412 438 8.130469 TGTTGATTATGTGTATGATGATGTTGC 58.870 33.333 0.00 0.00 0.00 4.17
413 439 7.804843 TGATTATGTGTATGATGATGTTGCA 57.195 32.000 0.00 0.00 0.00 4.08
414 440 8.223177 TGATTATGTGTATGATGATGTTGCAA 57.777 30.769 0.00 0.00 0.00 4.08
415 441 8.684520 TGATTATGTGTATGATGATGTTGCAAA 58.315 29.630 0.00 0.00 0.00 3.68
416 442 9.687210 GATTATGTGTATGATGATGTTGCAAAT 57.313 29.630 0.00 0.00 0.00 2.32
417 443 8.859517 TTATGTGTATGATGATGTTGCAAATG 57.140 30.769 0.00 0.00 0.00 2.32
449 475 2.101582 ACTCCATCCGTAGCTCATGTTC 59.898 50.000 0.00 0.00 0.00 3.18
473 499 4.887071 TGTGGTGCCCTATTTTACATCATC 59.113 41.667 0.00 0.00 0.00 2.92
481 507 6.049149 CCCTATTTTACATCATCTGACACGT 58.951 40.000 0.00 0.00 0.00 4.49
496 522 3.813166 TGACACGTCAGAAAATTTCCCTC 59.187 43.478 1.57 0.00 34.14 4.30
522 548 6.498538 ACTCTGAAATCTTCTCTCCTTCCTA 58.501 40.000 0.00 0.00 0.00 2.94
528 554 8.440771 TGAAATCTTCTCTCCTTCCTAAAAACT 58.559 33.333 0.00 0.00 0.00 2.66
593 619 6.352565 GGATGCTCTTAGATGCCCTTACATAT 60.353 42.308 2.31 0.00 0.00 1.78
594 620 7.147655 GGATGCTCTTAGATGCCCTTACATATA 60.148 40.741 2.31 0.00 0.00 0.86
595 621 6.936279 TGCTCTTAGATGCCCTTACATATAC 58.064 40.000 2.31 0.00 0.00 1.47
596 622 6.496911 TGCTCTTAGATGCCCTTACATATACA 59.503 38.462 2.31 0.00 0.00 2.29
597 623 7.016170 TGCTCTTAGATGCCCTTACATATACAA 59.984 37.037 2.31 0.00 0.00 2.41
598 624 7.878127 GCTCTTAGATGCCCTTACATATACAAA 59.122 37.037 0.00 0.00 0.00 2.83
599 625 9.429359 CTCTTAGATGCCCTTACATATACAAAG 57.571 37.037 0.00 0.00 0.00 2.77
600 626 9.154632 TCTTAGATGCCCTTACATATACAAAGA 57.845 33.333 0.00 0.00 0.00 2.52
601 627 9.778741 CTTAGATGCCCTTACATATACAAAGAA 57.221 33.333 0.00 0.00 0.00 2.52
604 630 9.125026 AGATGCCCTTACATATACAAAGAAAAG 57.875 33.333 0.00 0.00 0.00 2.27
605 631 7.639113 TGCCCTTACATATACAAAGAAAAGG 57.361 36.000 0.00 0.00 33.55 3.11
606 632 6.096282 TGCCCTTACATATACAAAGAAAAGGC 59.904 38.462 0.00 0.00 32.63 4.35
607 633 6.096282 GCCCTTACATATACAAAGAAAAGGCA 59.904 38.462 0.00 0.00 32.63 4.75
608 634 7.363443 GCCCTTACATATACAAAGAAAAGGCAA 60.363 37.037 0.00 0.00 32.63 4.52
609 635 8.527810 CCCTTACATATACAAAGAAAAGGCAAA 58.472 33.333 0.00 0.00 32.63 3.68
610 636 9.921637 CCTTACATATACAAAGAAAAGGCAAAA 57.078 29.630 0.00 0.00 0.00 2.44
614 640 9.040939 ACATATACAAAGAAAAGGCAAAACAAC 57.959 29.630 0.00 0.00 0.00 3.32
615 641 6.918892 ATACAAAGAAAAGGCAAAACAACC 57.081 33.333 0.00 0.00 0.00 3.77
616 642 4.006989 ACAAAGAAAAGGCAAAACAACCC 58.993 39.130 0.00 0.00 0.00 4.11
617 643 2.595124 AGAAAAGGCAAAACAACCCG 57.405 45.000 0.00 0.00 0.00 5.28
618 644 1.828595 AGAAAAGGCAAAACAACCCGT 59.171 42.857 0.00 0.00 0.00 5.28
619 645 2.159156 AGAAAAGGCAAAACAACCCGTC 60.159 45.455 0.00 0.00 0.00 4.79
620 646 1.187087 AAAGGCAAAACAACCCGTCA 58.813 45.000 0.00 0.00 0.00 4.35
621 647 1.187087 AAGGCAAAACAACCCGTCAA 58.813 45.000 0.00 0.00 0.00 3.18
622 648 0.744281 AGGCAAAACAACCCGTCAAG 59.256 50.000 0.00 0.00 0.00 3.02
623 649 0.741915 GGCAAAACAACCCGTCAAGA 59.258 50.000 0.00 0.00 0.00 3.02
627 653 3.680458 GCAAAACAACCCGTCAAGAAAAA 59.320 39.130 0.00 0.00 0.00 1.94
652 678 6.691754 AAAGGCAAAACAAATAAACAAGGG 57.308 33.333 0.00 0.00 0.00 3.95
656 682 4.210328 GCAAAACAAATAAACAAGGGACCG 59.790 41.667 0.00 0.00 0.00 4.79
658 684 4.841443 AACAAATAAACAAGGGACCGTC 57.159 40.909 0.00 0.00 0.00 4.79
662 688 2.153366 TAAACAAGGGACCGTCGTTC 57.847 50.000 0.00 0.00 0.00 3.95
664 690 0.531311 AACAAGGGACCGTCGTTCAC 60.531 55.000 0.00 0.00 0.00 3.18
734 760 4.775058 AAGAATATCCTCCGATGACGAG 57.225 45.455 0.00 0.00 42.66 4.18
1023 1049 3.855853 GCTCGCTTCCCCCTCCTC 61.856 72.222 0.00 0.00 0.00 3.71
1024 1050 3.157949 CTCGCTTCCCCCTCCTCC 61.158 72.222 0.00 0.00 0.00 4.30
1025 1051 3.684628 TCGCTTCCCCCTCCTCCT 61.685 66.667 0.00 0.00 0.00 3.69
1066 1092 3.144120 CTCCTGATCACCTCCGCCG 62.144 68.421 0.00 0.00 0.00 6.46
1067 1093 4.899239 CCTGATCACCTCCGCCGC 62.899 72.222 0.00 0.00 0.00 6.53
1068 1094 4.899239 CTGATCACCTCCGCCGCC 62.899 72.222 0.00 0.00 0.00 6.13
1110 1136 2.105766 GGACTCACCCAAGGTATACGT 58.894 52.381 0.00 0.00 32.11 3.57
1111 1137 3.290710 GGACTCACCCAAGGTATACGTA 58.709 50.000 0.00 0.00 32.11 3.57
1112 1138 3.893813 GGACTCACCCAAGGTATACGTAT 59.106 47.826 13.54 13.54 32.11 3.06
1113 1139 5.072741 GGACTCACCCAAGGTATACGTATA 58.927 45.833 11.27 11.27 32.11 1.47
1114 1140 5.048434 GGACTCACCCAAGGTATACGTATAC 60.048 48.000 29.61 29.61 38.21 1.47
1167 1193 0.673644 CACCGAACCAGGCCAGTTAG 60.674 60.000 5.01 8.67 33.69 2.34
1173 1199 3.119849 CGAACCAGGCCAGTTAGAATTTG 60.120 47.826 5.01 0.00 0.00 2.32
1181 1207 3.356290 CCAGTTAGAATTTGGGGACAGG 58.644 50.000 0.00 0.00 44.54 4.00
1202 1229 2.071778 TTTCAGTTCTTGGGCAGCTT 57.928 45.000 0.00 0.00 0.00 3.74
1206 1233 0.538287 AGTTCTTGGGCAGCTTGGTC 60.538 55.000 0.00 0.00 0.00 4.02
1240 1267 1.227943 TGTGGTCTTGCTGCTGGTC 60.228 57.895 0.00 0.00 0.00 4.02
1309 1336 3.677190 TCTGCATGTGATTGATGTGACA 58.323 40.909 0.00 0.00 0.00 3.58
1351 1378 1.033746 ACTGCCAAATCCGATGCCTG 61.034 55.000 0.00 0.00 0.00 4.85
1565 1592 0.323725 AAGCTGTAAGTGCCCATGGG 60.324 55.000 27.87 27.87 35.30 4.00
1573 1600 1.825105 AGTGCCCATGGGATAGTGAT 58.175 50.000 36.00 9.06 37.50 3.06
1684 1724 4.189580 AGGTGGTGTGCGGTTGCT 62.190 61.111 0.00 0.00 43.34 3.91
1699 1739 4.389077 GCGGTTGCTACCAATCTGATATAC 59.611 45.833 17.63 0.00 45.31 1.47
1728 1768 4.164221 TGTCTGGACAGGAACTTTTCTTCT 59.836 41.667 0.00 0.00 34.60 2.85
1801 1841 4.815533 ACTGAGATGTATGCTTCAGTGT 57.184 40.909 12.58 1.16 37.10 3.55
1844 1884 6.716628 TGTTCAATGCCTTGTTCTAGAGATTT 59.283 34.615 1.49 0.00 33.87 2.17
1846 1886 7.383102 TCAATGCCTTGTTCTAGAGATTTTC 57.617 36.000 1.49 0.00 33.87 2.29
1847 1887 7.170965 TCAATGCCTTGTTCTAGAGATTTTCT 58.829 34.615 1.49 0.00 35.53 2.52
2015 2055 2.224867 CCAGAACAAACTCATCCTGGGT 60.225 50.000 0.00 0.00 37.95 4.51
2097 2336 6.581542 GCTTTCAGTTCTGATCATTCTGTTTG 59.418 38.462 16.12 10.84 0.00 2.93
2270 2528 4.371624 TGTTCACCTTGATCTGGTCATT 57.628 40.909 7.80 0.00 36.54 2.57
2431 2689 3.367992 TTGGCATGTACTTTTGCACTG 57.632 42.857 14.84 0.00 40.66 3.66
2551 2890 1.755179 AGATATTGTGCACACCTGCC 58.245 50.000 21.56 8.13 43.51 4.85
2563 2902 1.726853 CACCTGCCTGTGTAGTTAGC 58.273 55.000 0.00 0.00 0.00 3.09
2586 2925 2.404265 TGTTGCGCAACTCTTCATTG 57.596 45.000 42.62 0.00 41.67 2.82
2598 2937 3.251729 ACTCTTCATTGTGTGTGCATCAC 59.748 43.478 15.06 15.06 46.31 3.06
2656 2995 7.645058 ACCTTTATTTTGCTGCTGTGTATAT 57.355 32.000 0.00 0.00 0.00 0.86
2694 3033 7.393234 AGTGAAATGAGGAAAATATGGAACGAA 59.607 33.333 0.00 0.00 0.00 3.85
2717 3056 8.629986 CGAACAAATGAATGTGTTTCTTCATAC 58.370 33.333 0.49 0.00 40.33 2.39
2788 3127 4.644685 ACAAATCCTGCAGTACAACAGTTT 59.355 37.500 13.81 6.29 31.76 2.66
2809 3148 7.175641 CAGTTTTCCTACAAATCAATCCAGAGT 59.824 37.037 0.00 0.00 0.00 3.24
2821 3160 4.768448 TCAATCCAGAGTGCAACAAATCAT 59.232 37.500 0.00 0.00 41.43 2.45
2908 3247 1.136336 CAAGTCGCAGTAAAAGTCCGC 60.136 52.381 0.00 0.00 0.00 5.54
2989 3328 4.458989 GCACACACCTCCATAAAGAAATCA 59.541 41.667 0.00 0.00 0.00 2.57
3060 3399 3.369147 CAGGTTGCATAACACTCTTCTCG 59.631 47.826 0.00 0.00 38.58 4.04
3063 3402 1.275010 TGCATAACACTCTTCTCGCCA 59.725 47.619 0.00 0.00 0.00 5.69
3074 3413 2.736721 TCTTCTCGCCAGTGATTTTTCG 59.263 45.455 0.00 0.00 0.00 3.46
3104 3443 0.609131 AAGCAGCAACCCGCATAAGT 60.609 50.000 0.00 0.00 46.13 2.24
3127 3466 1.945387 CTTCATGCTGTATGTCGCCT 58.055 50.000 5.64 0.00 38.01 5.52
3137 3476 1.591504 TATGTCGCCTGAGTCGTGCA 61.592 55.000 4.79 0.00 0.00 4.57
3320 3659 8.972262 TTGTACTAAAATAATCATTTTGCGCA 57.028 26.923 5.66 5.66 42.85 6.09
3322 3661 6.553255 ACTAAAATAATCATTTTGCGCACG 57.447 33.333 11.12 0.00 42.85 5.34
3354 3701 9.121517 CACTGAATTTATCAATTGACACAGTTC 57.878 33.333 11.07 11.75 34.11 3.01
3504 3851 1.012086 CACTCATGTCCAATGGCTCG 58.988 55.000 0.00 0.00 0.00 5.03
3954 4307 0.986527 TGGATCAGAGCATGTGTGGT 59.013 50.000 0.00 0.00 39.13 4.16
4147 4503 8.854979 TTTTTGTGCACTGCATATTATGTATC 57.145 30.769 19.41 0.00 41.91 2.24
4173 4529 6.624352 TTGCTTTACCATCTATCTGATTGC 57.376 37.500 0.00 0.00 32.05 3.56
4178 4534 7.331934 GCTTTACCATCTATCTGATTGCGAATA 59.668 37.037 0.00 0.00 32.05 1.75
4227 4583 4.202326 ACTCAGGTGTTATCGACCAAAAGT 60.202 41.667 0.00 0.00 35.76 2.66
4266 4622 3.307199 GGGTGGTTCTCTTGGAAATCGTA 60.307 47.826 0.00 0.00 35.51 3.43
4338 4694 4.618920 AGTCGAGTGGGTAAGTTTTCAT 57.381 40.909 0.00 0.00 0.00 2.57
4351 4707 3.981211 AGTTTTCATTGCACACCATCAC 58.019 40.909 0.00 0.00 0.00 3.06
4366 4722 4.515944 CACCATCACAAACCATGCATTTTT 59.484 37.500 0.00 0.00 0.00 1.94
4400 4759 7.439655 GCTGCTGCTAGTTCTAGTTATACATTT 59.560 37.037 8.53 0.00 36.03 2.32
4405 4764 7.919091 TGCTAGTTCTAGTTATACATTTCACGG 59.081 37.037 8.38 0.00 0.00 4.94
4412 4771 6.490566 AGTTATACATTTCACGGTTGTTCC 57.509 37.500 0.00 0.00 0.00 3.62
4420 4779 2.938838 TCACGGTTGTTCCAGGAAAAT 58.061 42.857 2.45 0.00 35.57 1.82
4421 4780 2.882137 TCACGGTTGTTCCAGGAAAATC 59.118 45.455 2.45 0.00 35.57 2.17
4433 4792 6.308371 TCCAGGAAAATCGAAAACAGTAAC 57.692 37.500 0.00 0.00 0.00 2.50
4434 4793 6.059484 TCCAGGAAAATCGAAAACAGTAACT 58.941 36.000 0.00 0.00 0.00 2.24
4436 4795 6.856426 CCAGGAAAATCGAAAACAGTAACTTC 59.144 38.462 0.00 0.00 0.00 3.01
4438 4797 7.587757 CAGGAAAATCGAAAACAGTAACTTCAG 59.412 37.037 0.00 0.00 0.00 3.02
4439 4798 7.282450 AGGAAAATCGAAAACAGTAACTTCAGT 59.718 33.333 0.00 0.00 0.00 3.41
4442 4801 8.836959 AAATCGAAAACAGTAACTTCAGTTTC 57.163 30.769 0.00 0.00 39.31 2.78
4443 4802 6.971527 TCGAAAACAGTAACTTCAGTTTCA 57.028 33.333 0.00 0.00 39.31 2.69
4444 4803 7.548196 TCGAAAACAGTAACTTCAGTTTCAT 57.452 32.000 0.00 0.00 39.31 2.57
4445 4804 7.981142 TCGAAAACAGTAACTTCAGTTTCATT 58.019 30.769 0.00 0.00 39.31 2.57
4457 4816 8.545229 ACTTCAGTTTCATTATCAGAACTCTG 57.455 34.615 0.00 0.00 45.08 3.35
4472 4831 3.591196 ACTCTGAAGTGTCATCAGCTC 57.409 47.619 0.00 0.00 43.19 4.09
4475 4834 4.114073 CTCTGAAGTGTCATCAGCTCATC 58.886 47.826 0.00 0.00 43.19 2.92
4480 4839 4.232188 AGTGTCATCAGCTCATCCAATT 57.768 40.909 0.00 0.00 0.00 2.32
4486 4845 6.127925 TGTCATCAGCTCATCCAATTTTACAC 60.128 38.462 0.00 0.00 0.00 2.90
4487 4846 5.357878 TCATCAGCTCATCCAATTTTACACC 59.642 40.000 0.00 0.00 0.00 4.16
4488 4847 4.661222 TCAGCTCATCCAATTTTACACCA 58.339 39.130 0.00 0.00 0.00 4.17
4489 4848 5.263599 TCAGCTCATCCAATTTTACACCAT 58.736 37.500 0.00 0.00 0.00 3.55
4490 4849 5.125900 TCAGCTCATCCAATTTTACACCATG 59.874 40.000 0.00 0.00 0.00 3.66
4491 4850 4.403432 AGCTCATCCAATTTTACACCATGG 59.597 41.667 11.19 11.19 0.00 3.66
4492 4851 4.402155 GCTCATCCAATTTTACACCATGGA 59.598 41.667 21.47 0.00 43.79 3.41
4494 4853 5.328565 TCATCCAATTTTACACCATGGACA 58.671 37.500 21.47 0.00 42.57 4.02
4495 4854 5.957168 TCATCCAATTTTACACCATGGACAT 59.043 36.000 21.47 5.52 42.57 3.06
4496 4855 5.657826 TCCAATTTTACACCATGGACATG 57.342 39.130 21.47 9.24 35.33 3.21
4559 4918 1.454111 CGAGGAGATCGTGGACCCT 60.454 63.158 0.00 0.00 46.62 4.34
4706 5065 2.534298 CTCATCATCGAGAACAACGCT 58.466 47.619 0.00 0.00 34.79 5.07
4773 5132 1.065928 CGCTACCTGTCCATCGACC 59.934 63.158 0.00 0.00 38.32 4.79
4925 5289 5.278610 CCGTTCGTAATATATGGTGGTCTCA 60.279 44.000 0.00 0.00 0.00 3.27
4926 5290 5.856986 CGTTCGTAATATATGGTGGTCTCAG 59.143 44.000 0.00 0.00 0.00 3.35
4927 5291 6.293790 CGTTCGTAATATATGGTGGTCTCAGA 60.294 42.308 0.00 0.00 0.00 3.27
4928 5292 7.431249 GTTCGTAATATATGGTGGTCTCAGAA 58.569 38.462 0.00 0.00 0.00 3.02
4929 5293 7.215719 TCGTAATATATGGTGGTCTCAGAAG 57.784 40.000 0.00 0.00 0.00 2.85
4930 5294 6.208797 TCGTAATATATGGTGGTCTCAGAAGG 59.791 42.308 0.00 0.00 0.00 3.46
4931 5295 4.899352 ATATATGGTGGTCTCAGAAGGC 57.101 45.455 0.00 0.00 0.00 4.35
4936 5300 4.972875 GGTCTCAGAAGGCCCATG 57.027 61.111 0.00 0.00 41.85 3.66
4937 5301 1.225704 GGTCTCAGAAGGCCCATGG 59.774 63.158 4.14 4.14 41.85 3.66
4938 5302 1.566298 GGTCTCAGAAGGCCCATGGT 61.566 60.000 11.73 0.00 41.85 3.55
4939 5303 0.107459 GTCTCAGAAGGCCCATGGTC 60.107 60.000 11.73 0.00 0.00 4.02
4940 5304 0.252881 TCTCAGAAGGCCCATGGTCT 60.253 55.000 11.73 3.66 40.63 3.85
4941 5305 0.179936 CTCAGAAGGCCCATGGTCTC 59.820 60.000 11.73 1.29 36.17 3.36
4967 5331 2.583024 TGGATGTGATGGTTGCTGAA 57.417 45.000 0.00 0.00 0.00 3.02
4977 5341 2.997980 TGGTTGCTGAAGAAGACACAA 58.002 42.857 0.00 0.00 0.00 3.33
4987 5352 2.561569 AGAAGACACAACCGGAGTTTG 58.438 47.619 9.46 4.81 32.45 2.93
4989 5354 2.413310 AGACACAACCGGAGTTTGTT 57.587 45.000 9.46 0.00 32.45 2.83
4994 5359 1.895231 AACCGGAGTTTGTTCCCGC 60.895 57.895 9.46 0.00 41.74 6.13
4998 5363 0.673644 CGGAGTTTGTTCCCGCAGAT 60.674 55.000 0.00 0.00 36.62 2.90
5000 5365 0.804989 GAGTTTGTTCCCGCAGATGG 59.195 55.000 0.00 0.00 0.00 3.51
5006 5371 1.031571 GTTCCCGCAGATGGCATGAA 61.032 55.000 3.81 0.00 45.17 2.57
5028 5393 3.962557 CGAAGGGAGAGGAGGCAT 58.037 61.111 0.00 0.00 0.00 4.40
5029 5394 1.445095 CGAAGGGAGAGGAGGCATG 59.555 63.158 0.00 0.00 0.00 4.06
5030 5395 1.835693 GAAGGGAGAGGAGGCATGG 59.164 63.158 0.00 0.00 0.00 3.66
5031 5396 0.692419 GAAGGGAGAGGAGGCATGGA 60.692 60.000 0.00 0.00 0.00 3.41
5032 5397 0.693767 AAGGGAGAGGAGGCATGGAG 60.694 60.000 0.00 0.00 0.00 3.86
5033 5398 1.074926 GGGAGAGGAGGCATGGAGA 60.075 63.158 0.00 0.00 0.00 3.71
5034 5399 1.120795 GGGAGAGGAGGCATGGAGAG 61.121 65.000 0.00 0.00 0.00 3.20
5035 5400 1.120795 GGAGAGGAGGCATGGAGAGG 61.121 65.000 0.00 0.00 0.00 3.69
5036 5401 1.074623 AGAGGAGGCATGGAGAGGG 60.075 63.158 0.00 0.00 0.00 4.30
5057 5422 0.609131 ACACAGGCCATGCAGTTACC 60.609 55.000 5.01 0.00 0.00 2.85
5059 5424 0.609131 ACAGGCCATGCAGTTACCAC 60.609 55.000 5.01 0.00 0.00 4.16
5060 5425 1.377202 AGGCCATGCAGTTACCACG 60.377 57.895 5.01 0.00 0.00 4.94
5061 5426 2.406616 GGCCATGCAGTTACCACGG 61.407 63.158 0.00 0.00 0.00 4.94
5062 5427 3.051392 GCCATGCAGTTACCACGGC 62.051 63.158 0.00 0.00 43.83 5.68
5069 5442 1.147376 AGTTACCACGGCAGTTGCA 59.853 52.632 6.43 0.00 44.36 4.08
5098 5471 5.004448 GGAAGTTTTCCCCTAGAGACAAAG 58.996 45.833 0.00 0.00 44.30 2.77
5101 5474 4.043435 AGTTTTCCCCTAGAGACAAAGCAT 59.957 41.667 0.00 0.00 0.00 3.79
5102 5475 3.634397 TTCCCCTAGAGACAAAGCATG 57.366 47.619 0.00 0.00 0.00 4.06
5146 5519 7.566760 TTTGTATGTTGAATTCGATGCCTAT 57.433 32.000 0.00 0.00 0.00 2.57
5148 5521 8.846943 TTGTATGTTGAATTCGATGCCTATAT 57.153 30.769 0.00 0.00 0.00 0.86
5149 5522 8.255394 TGTATGTTGAATTCGATGCCTATATG 57.745 34.615 0.00 0.00 0.00 1.78
5150 5523 7.877612 TGTATGTTGAATTCGATGCCTATATGT 59.122 33.333 0.00 0.00 0.00 2.29
5151 5524 9.366216 GTATGTTGAATTCGATGCCTATATGTA 57.634 33.333 0.00 0.00 0.00 2.29
5152 5525 7.652300 TGTTGAATTCGATGCCTATATGTAC 57.348 36.000 0.00 0.00 0.00 2.90
5153 5526 6.649141 TGTTGAATTCGATGCCTATATGTACC 59.351 38.462 0.00 0.00 0.00 3.34
5154 5527 6.353404 TGAATTCGATGCCTATATGTACCA 57.647 37.500 0.04 0.00 0.00 3.25
5155 5528 6.946340 TGAATTCGATGCCTATATGTACCAT 58.054 36.000 0.04 0.00 0.00 3.55
5156 5529 6.818142 TGAATTCGATGCCTATATGTACCATG 59.182 38.462 0.04 0.00 0.00 3.66
5157 5530 4.123497 TCGATGCCTATATGTACCATGC 57.877 45.455 0.00 0.00 0.00 4.06
5158 5531 2.860136 CGATGCCTATATGTACCATGCG 59.140 50.000 0.00 0.00 0.00 4.73
5159 5532 3.676049 CGATGCCTATATGTACCATGCGT 60.676 47.826 0.00 0.00 0.00 5.24
5160 5533 3.038788 TGCCTATATGTACCATGCGTG 57.961 47.619 0.00 0.00 0.00 5.34
5214 5593 6.663093 TGTTGATGTATTCTTTGGCCAACTAT 59.337 34.615 20.35 13.96 35.17 2.12
5215 5594 7.831690 TGTTGATGTATTCTTTGGCCAACTATA 59.168 33.333 20.35 12.93 35.17 1.31
5358 5742 3.933861 ACTCCCTCTGTTCACTTTTGT 57.066 42.857 0.00 0.00 0.00 2.83
5359 5743 6.681729 ATACTCCCTCTGTTCACTTTTGTA 57.318 37.500 0.00 0.00 0.00 2.41
5360 5744 5.367945 ACTCCCTCTGTTCACTTTTGTAA 57.632 39.130 0.00 0.00 0.00 2.41
5362 5746 5.104485 ACTCCCTCTGTTCACTTTTGTAAGT 60.104 40.000 0.00 0.00 45.40 2.24
5363 5747 5.365619 TCCCTCTGTTCACTTTTGTAAGTC 58.634 41.667 0.00 0.00 42.67 3.01
5364 5748 5.104693 TCCCTCTGTTCACTTTTGTAAGTCA 60.105 40.000 0.00 0.00 42.67 3.41
5368 5752 8.836413 CCTCTGTTCACTTTTGTAAGTCATTTA 58.164 33.333 0.00 0.00 42.67 1.40
5372 5756 9.997482 TGTTCACTTTTGTAAGTCATTTAAGAC 57.003 29.630 0.00 0.00 42.67 3.01
5373 5757 9.997482 GTTCACTTTTGTAAGTCATTTAAGACA 57.003 29.630 0.00 0.00 42.67 3.41
5386 5770 9.736023 AGTCATTTAAGACAACTGAAATTGAAC 57.264 29.630 0.00 0.00 40.98 3.18
5387 5771 9.736023 GTCATTTAAGACAACTGAAATTGAACT 57.264 29.630 0.00 0.00 35.62 3.01
5388 5772 9.734620 TCATTTAAGACAACTGAAATTGAACTG 57.265 29.630 0.00 0.00 35.62 3.16
5391 5775 9.921637 TTTAAGACAACTGAAATTGAACTGTTT 57.078 25.926 0.00 0.00 33.57 2.83
5392 5776 9.921637 TTAAGACAACTGAAATTGAACTGTTTT 57.078 25.926 0.00 0.00 33.57 2.43
5394 5778 9.573133 AAGACAACTGAAATTGAACTGTTTTAG 57.427 29.630 0.00 0.00 33.57 1.85
5395 5779 8.190784 AGACAACTGAAATTGAACTGTTTTAGG 58.809 33.333 0.00 0.00 33.57 2.69
5396 5780 7.836842 ACAACTGAAATTGAACTGTTTTAGGT 58.163 30.769 0.00 0.00 33.57 3.08
5397 5781 7.759433 ACAACTGAAATTGAACTGTTTTAGGTG 59.241 33.333 6.24 6.24 41.60 4.00
5399 5783 6.096846 ACTGAAATTGAACTGTTTTAGGTGCT 59.903 34.615 0.00 0.00 0.00 4.40
5400 5784 6.272318 TGAAATTGAACTGTTTTAGGTGCTG 58.728 36.000 0.00 0.00 0.00 4.41
5401 5785 5.852282 AATTGAACTGTTTTAGGTGCTGT 57.148 34.783 0.00 0.00 0.00 4.40
5402 5786 4.893424 TTGAACTGTTTTAGGTGCTGTC 57.107 40.909 0.00 0.00 0.00 3.51
5403 5787 4.150897 TGAACTGTTTTAGGTGCTGTCT 57.849 40.909 0.00 0.00 0.00 3.41
5404 5788 4.523083 TGAACTGTTTTAGGTGCTGTCTT 58.477 39.130 0.00 0.00 0.00 3.01
5405 5789 5.676552 TGAACTGTTTTAGGTGCTGTCTTA 58.323 37.500 0.00 0.00 0.00 2.10
5406 5790 6.116806 TGAACTGTTTTAGGTGCTGTCTTAA 58.883 36.000 0.00 0.00 0.00 1.85
5407 5791 6.600032 TGAACTGTTTTAGGTGCTGTCTTAAA 59.400 34.615 0.00 0.00 0.00 1.52
5408 5792 7.284489 TGAACTGTTTTAGGTGCTGTCTTAAAT 59.716 33.333 0.00 0.00 0.00 1.40
5409 5793 6.970484 ACTGTTTTAGGTGCTGTCTTAAATG 58.030 36.000 0.00 0.00 0.00 2.32
5410 5794 6.546034 ACTGTTTTAGGTGCTGTCTTAAATGT 59.454 34.615 0.00 0.00 0.00 2.71
5413 5797 7.934665 TGTTTTAGGTGCTGTCTTAAATGTCTA 59.065 33.333 0.00 0.00 0.00 2.59
5414 5798 8.780249 GTTTTAGGTGCTGTCTTAAATGTCTAA 58.220 33.333 0.00 0.00 0.00 2.10
5415 5799 8.911918 TTTAGGTGCTGTCTTAAATGTCTAAA 57.088 30.769 0.00 0.00 0.00 1.85
5416 5800 8.911918 TTAGGTGCTGTCTTAAATGTCTAAAA 57.088 30.769 0.00 0.00 0.00 1.52
5418 5802 6.073222 AGGTGCTGTCTTAAATGTCTAAAACG 60.073 38.462 0.00 0.00 0.00 3.60
5419 5803 6.293244 GGTGCTGTCTTAAATGTCTAAAACGT 60.293 38.462 0.00 0.00 0.00 3.99
5421 5805 6.704493 TGCTGTCTTAAATGTCTAAAACGTCT 59.296 34.615 0.00 0.00 0.00 4.18
5422 5806 7.225931 TGCTGTCTTAAATGTCTAAAACGTCTT 59.774 33.333 0.00 0.00 0.00 3.01
5423 5807 8.706035 GCTGTCTTAAATGTCTAAAACGTCTTA 58.294 33.333 0.00 0.00 0.00 2.10
5425 5809 9.531942 TGTCTTAAATGTCTAAAACGTCTTACA 57.468 29.630 0.00 0.00 0.00 2.41
5434 5818 9.493206 TGTCTAAAACGTCTTACAAAAATGAAC 57.507 29.630 0.00 0.00 0.00 3.18
5435 5819 8.667204 GTCTAAAACGTCTTACAAAAATGAACG 58.333 33.333 0.00 0.00 0.00 3.95
5436 5820 6.799786 AAAACGTCTTACAAAAATGAACGG 57.200 33.333 0.00 0.00 0.00 4.44
5437 5821 5.738118 AACGTCTTACAAAAATGAACGGA 57.262 34.783 0.00 0.00 0.00 4.69
5438 5822 5.338614 ACGTCTTACAAAAATGAACGGAG 57.661 39.130 0.00 0.00 0.00 4.63
5440 5824 4.378046 CGTCTTACAAAAATGAACGGAGGG 60.378 45.833 0.00 0.00 0.00 4.30
5500 6749 5.255596 CGAAACATAGGTTTTGCGACATAG 58.744 41.667 6.98 0.00 46.84 2.23
5610 6859 1.511887 CATTCAAAGCGCGGTTCCG 60.512 57.895 25.23 18.07 0.00 4.30
5635 6884 6.402226 GCAACTAGTAAATGTTACAGAGCCAC 60.402 42.308 0.00 0.00 0.00 5.01
5664 6913 1.950216 GCTAAGCAAATCTAGCCCCAC 59.050 52.381 0.00 0.00 0.00 4.61
5665 6914 2.683742 GCTAAGCAAATCTAGCCCCACA 60.684 50.000 0.00 0.00 0.00 4.17
5666 6915 2.834638 AAGCAAATCTAGCCCCACAT 57.165 45.000 0.00 0.00 0.00 3.21
5667 6916 3.951563 AAGCAAATCTAGCCCCACATA 57.048 42.857 0.00 0.00 0.00 2.29
5668 6917 3.214696 AGCAAATCTAGCCCCACATAC 57.785 47.619 0.00 0.00 0.00 2.39
5669 6918 2.780010 AGCAAATCTAGCCCCACATACT 59.220 45.455 0.00 0.00 0.00 2.12
5670 6919 2.880890 GCAAATCTAGCCCCACATACTG 59.119 50.000 0.00 0.00 0.00 2.74
5671 6920 2.880890 CAAATCTAGCCCCACATACTGC 59.119 50.000 0.00 0.00 0.00 4.40
5672 6921 1.059913 ATCTAGCCCCACATACTGCC 58.940 55.000 0.00 0.00 0.00 4.85
5673 6922 0.326143 TCTAGCCCCACATACTGCCA 60.326 55.000 0.00 0.00 0.00 4.92
5674 6923 0.179045 CTAGCCCCACATACTGCCAC 60.179 60.000 0.00 0.00 0.00 5.01
5675 6924 0.620410 TAGCCCCACATACTGCCACT 60.620 55.000 0.00 0.00 0.00 4.00
5676 6925 0.620410 AGCCCCACATACTGCCACTA 60.620 55.000 0.00 0.00 0.00 2.74
5677 6926 0.463833 GCCCCACATACTGCCACTAC 60.464 60.000 0.00 0.00 0.00 2.73
5678 6927 0.180406 CCCCACATACTGCCACTACC 59.820 60.000 0.00 0.00 0.00 3.18
5679 6928 0.180406 CCCACATACTGCCACTACCC 59.820 60.000 0.00 0.00 0.00 3.69
5680 6929 0.908910 CCACATACTGCCACTACCCA 59.091 55.000 0.00 0.00 0.00 4.51
5681 6930 1.406887 CCACATACTGCCACTACCCAC 60.407 57.143 0.00 0.00 0.00 4.61
5682 6931 1.277842 CACATACTGCCACTACCCACA 59.722 52.381 0.00 0.00 0.00 4.17
5683 6932 1.982226 ACATACTGCCACTACCCACAA 59.018 47.619 0.00 0.00 0.00 3.33
5684 6933 2.290071 ACATACTGCCACTACCCACAAC 60.290 50.000 0.00 0.00 0.00 3.32
5685 6934 1.724545 TACTGCCACTACCCACAACT 58.275 50.000 0.00 0.00 0.00 3.16
5686 6935 1.724545 ACTGCCACTACCCACAACTA 58.275 50.000 0.00 0.00 0.00 2.24
5687 6936 1.623811 ACTGCCACTACCCACAACTAG 59.376 52.381 0.00 0.00 0.00 2.57
5688 6937 1.623811 CTGCCACTACCCACAACTAGT 59.376 52.381 0.00 0.00 0.00 2.57
5689 6938 2.829720 CTGCCACTACCCACAACTAGTA 59.170 50.000 0.00 0.00 0.00 1.82
5690 6939 3.241156 TGCCACTACCCACAACTAGTAA 58.759 45.455 0.00 0.00 0.00 2.24
5691 6940 3.647113 TGCCACTACCCACAACTAGTAAA 59.353 43.478 0.00 0.00 0.00 2.01
5692 6941 4.287585 TGCCACTACCCACAACTAGTAAAT 59.712 41.667 0.00 0.00 0.00 1.40
5693 6942 4.634443 GCCACTACCCACAACTAGTAAATG 59.366 45.833 0.00 0.00 0.00 2.32
5694 6943 5.801380 CCACTACCCACAACTAGTAAATGT 58.199 41.667 0.00 0.00 0.00 2.71
5695 6944 6.235664 CCACTACCCACAACTAGTAAATGTT 58.764 40.000 0.00 0.00 0.00 2.71
5696 6945 7.388437 CCACTACCCACAACTAGTAAATGTTA 58.612 38.462 0.00 0.00 0.00 2.41
5697 6946 7.332678 CCACTACCCACAACTAGTAAATGTTAC 59.667 40.741 0.00 0.00 0.00 2.50
5698 6947 7.874016 CACTACCCACAACTAGTAAATGTTACA 59.126 37.037 0.00 0.00 0.00 2.41
5699 6948 8.092687 ACTACCCACAACTAGTAAATGTTACAG 58.907 37.037 0.00 0.00 0.00 2.74
5700 6949 7.069877 ACCCACAACTAGTAAATGTTACAGA 57.930 36.000 0.00 0.00 0.00 3.41
5701 6950 7.159372 ACCCACAACTAGTAAATGTTACAGAG 58.841 38.462 0.00 1.08 0.00 3.35
5702 6951 6.092259 CCCACAACTAGTAAATGTTACAGAGC 59.908 42.308 0.00 0.00 0.00 4.09
5703 6952 6.092259 CCACAACTAGTAAATGTTACAGAGCC 59.908 42.308 0.00 0.00 0.00 4.70
5704 6953 6.649141 CACAACTAGTAAATGTTACAGAGCCA 59.351 38.462 0.00 0.00 0.00 4.75
5705 6954 6.649557 ACAACTAGTAAATGTTACAGAGCCAC 59.350 38.462 0.00 0.00 0.00 5.01
5706 6955 6.354794 ACTAGTAAATGTTACAGAGCCACA 57.645 37.500 0.00 0.00 0.00 4.17
5707 6956 6.765403 ACTAGTAAATGTTACAGAGCCACAA 58.235 36.000 0.00 0.00 0.00 3.33
5708 6957 7.394816 ACTAGTAAATGTTACAGAGCCACAAT 58.605 34.615 0.00 0.00 0.00 2.71
5709 6958 8.537016 ACTAGTAAATGTTACAGAGCCACAATA 58.463 33.333 0.00 0.00 0.00 1.90
5710 6959 7.611213 AGTAAATGTTACAGAGCCACAATAC 57.389 36.000 1.33 0.00 0.00 1.89
5711 6960 5.897377 AAATGTTACAGAGCCACAATACC 57.103 39.130 0.00 0.00 0.00 2.73
5712 6961 3.343941 TGTTACAGAGCCACAATACCC 57.656 47.619 0.00 0.00 0.00 3.69
5713 6962 2.277084 GTTACAGAGCCACAATACCCG 58.723 52.381 0.00 0.00 0.00 5.28
5714 6963 0.828022 TACAGAGCCACAATACCCGG 59.172 55.000 0.00 0.00 0.00 5.73
5715 6964 1.819632 CAGAGCCACAATACCCGGC 60.820 63.158 0.00 0.00 46.62 6.13
5718 6967 4.968370 GCCACAATACCCGGCTAA 57.032 55.556 0.00 0.00 42.78 3.09
5719 6968 2.702847 GCCACAATACCCGGCTAAG 58.297 57.895 0.00 0.00 42.78 2.18
5720 6969 1.444917 GCCACAATACCCGGCTAAGC 61.445 60.000 0.00 0.00 42.78 3.09
5721 6970 0.107410 CCACAATACCCGGCTAAGCA 60.107 55.000 0.00 0.00 0.00 3.91
5722 6971 1.680555 CCACAATACCCGGCTAAGCAA 60.681 52.381 0.00 0.00 0.00 3.91
5723 6972 2.088423 CACAATACCCGGCTAAGCAAA 58.912 47.619 0.00 0.00 0.00 3.68
5724 6973 2.687935 CACAATACCCGGCTAAGCAAAT 59.312 45.455 0.00 0.00 0.00 2.32
5725 6974 2.949644 ACAATACCCGGCTAAGCAAATC 59.050 45.455 0.00 0.00 0.00 2.17
5726 6975 3.214328 CAATACCCGGCTAAGCAAATCT 58.786 45.455 0.00 0.00 0.00 2.40
5727 6976 4.141574 ACAATACCCGGCTAAGCAAATCTA 60.142 41.667 0.00 0.00 0.00 1.98
5728 6977 2.622064 ACCCGGCTAAGCAAATCTAG 57.378 50.000 0.00 0.00 0.00 2.43
5729 6978 1.838077 ACCCGGCTAAGCAAATCTAGT 59.162 47.619 0.00 0.00 0.00 2.57
5730 6979 2.158943 ACCCGGCTAAGCAAATCTAGTC 60.159 50.000 0.00 0.00 0.00 2.59
5731 6980 2.484889 CCGGCTAAGCAAATCTAGTCC 58.515 52.381 0.00 0.00 0.00 3.85
5732 6981 2.484889 CGGCTAAGCAAATCTAGTCCC 58.515 52.381 0.00 0.00 0.00 4.46
5733 6982 2.158957 CGGCTAAGCAAATCTAGTCCCA 60.159 50.000 0.00 0.00 0.00 4.37
5734 6983 3.495100 CGGCTAAGCAAATCTAGTCCCAT 60.495 47.826 0.00 0.00 0.00 4.00
5735 6984 4.262463 CGGCTAAGCAAATCTAGTCCCATA 60.262 45.833 0.00 0.00 0.00 2.74
5750 7001 5.141182 AGTCCCATATACTGTCACTACCTG 58.859 45.833 0.00 0.00 0.00 4.00
5802 7054 6.255453 ACAGAAATTTGAACATTTGGAACACG 59.745 34.615 0.00 0.00 39.29 4.49
5882 7134 6.007703 TCTCCTTTTTGAATTACGGGACAAT 58.992 36.000 0.00 0.00 0.00 2.71
5936 7188 5.538849 TCTTATATGGGCACACGATTACA 57.461 39.130 0.00 0.00 0.00 2.41
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 2.973694 TAATGTAACGCCCTGAGACC 57.026 50.000 0.00 0.00 0.00 3.85
1 2 3.555956 CACATAATGTAACGCCCTGAGAC 59.444 47.826 0.00 0.00 0.00 3.36
2 3 3.196901 ACACATAATGTAACGCCCTGAGA 59.803 43.478 0.00 0.00 40.88 3.27
3 4 3.309682 CACACATAATGTAACGCCCTGAG 59.690 47.826 0.00 0.00 40.64 3.35
4 5 3.266636 CACACATAATGTAACGCCCTGA 58.733 45.455 0.00 0.00 40.64 3.86
5 6 2.223249 GCACACATAATGTAACGCCCTG 60.223 50.000 0.00 0.00 40.64 4.45
6 7 2.014128 GCACACATAATGTAACGCCCT 58.986 47.619 0.00 0.00 40.64 5.19
7 8 1.064952 GGCACACATAATGTAACGCCC 59.935 52.381 0.00 0.00 40.47 6.13
8 9 1.740585 TGGCACACATAATGTAACGCC 59.259 47.619 7.90 7.90 44.54 5.68
28 29 0.323629 CCTTACATGACACCACCCGT 59.676 55.000 0.00 0.00 0.00 5.28
29 30 0.611200 TCCTTACATGACACCACCCG 59.389 55.000 0.00 0.00 0.00 5.28
30 31 1.065418 CCTCCTTACATGACACCACCC 60.065 57.143 0.00 0.00 0.00 4.61
31 32 1.679032 GCCTCCTTACATGACACCACC 60.679 57.143 0.00 0.00 0.00 4.61
32 33 1.003118 TGCCTCCTTACATGACACCAC 59.997 52.381 0.00 0.00 0.00 4.16
33 34 1.357137 TGCCTCCTTACATGACACCA 58.643 50.000 0.00 0.00 0.00 4.17
34 35 2.292267 CATGCCTCCTTACATGACACC 58.708 52.381 0.00 0.00 45.23 4.16
38 39 2.571202 TCACACATGCCTCCTTACATGA 59.429 45.455 9.77 0.00 45.23 3.07
55 56 0.035152 GAGGCACCATCCATGTCACA 60.035 55.000 0.00 0.00 0.00 3.58
90 91 3.122480 TCCTCTCCCATTGGCTTCATTA 58.878 45.455 0.00 0.00 0.00 1.90
105 106 0.254178 TTCATGGGCTGCTTCCTCTC 59.746 55.000 0.00 0.00 0.00 3.20
116 125 3.131577 TGCATCTTCAATTCTTCATGGGC 59.868 43.478 0.00 0.00 0.00 5.36
141 150 6.539826 CACTGCCTTCATTATCATCACTTGTA 59.460 38.462 0.00 0.00 0.00 2.41
151 160 4.878397 ACTACAAGCACTGCCTTCATTATC 59.122 41.667 0.00 0.00 0.00 1.75
152 161 4.848357 ACTACAAGCACTGCCTTCATTAT 58.152 39.130 0.00 0.00 0.00 1.28
153 162 4.253685 GACTACAAGCACTGCCTTCATTA 58.746 43.478 0.00 0.00 0.00 1.90
154 163 3.077359 GACTACAAGCACTGCCTTCATT 58.923 45.455 0.00 0.00 0.00 2.57
155 164 2.704572 GACTACAAGCACTGCCTTCAT 58.295 47.619 0.00 0.00 0.00 2.57
156 165 1.605457 CGACTACAAGCACTGCCTTCA 60.605 52.381 0.00 0.00 0.00 3.02
157 166 1.071605 CGACTACAAGCACTGCCTTC 58.928 55.000 0.00 0.00 0.00 3.46
158 167 0.393077 ACGACTACAAGCACTGCCTT 59.607 50.000 0.00 0.00 0.00 4.35
159 168 0.038159 GACGACTACAAGCACTGCCT 60.038 55.000 0.00 0.00 0.00 4.75
160 169 1.344942 CGACGACTACAAGCACTGCC 61.345 60.000 0.00 0.00 0.00 4.85
161 170 1.945776 GCGACGACTACAAGCACTGC 61.946 60.000 0.00 0.00 0.00 4.40
162 171 0.387367 AGCGACGACTACAAGCACTG 60.387 55.000 0.00 0.00 0.00 3.66
163 172 1.130749 CTAGCGACGACTACAAGCACT 59.869 52.381 0.00 0.00 0.00 4.40
164 173 1.536149 CTAGCGACGACTACAAGCAC 58.464 55.000 0.00 0.00 0.00 4.40
165 174 0.450583 CCTAGCGACGACTACAAGCA 59.549 55.000 0.00 0.00 0.00 3.91
166 175 0.450983 ACCTAGCGACGACTACAAGC 59.549 55.000 0.00 0.00 0.00 4.01
167 176 1.202154 CCACCTAGCGACGACTACAAG 60.202 57.143 0.00 0.00 0.00 3.16
168 177 0.806868 CCACCTAGCGACGACTACAA 59.193 55.000 0.00 0.00 0.00 2.41
169 178 0.321919 ACCACCTAGCGACGACTACA 60.322 55.000 0.00 0.00 0.00 2.74
170 179 0.376502 GACCACCTAGCGACGACTAC 59.623 60.000 0.00 0.00 0.00 2.73
171 180 0.251354 AGACCACCTAGCGACGACTA 59.749 55.000 0.00 0.00 0.00 2.59
172 181 0.251354 TAGACCACCTAGCGACGACT 59.749 55.000 0.00 0.00 0.00 4.18
173 182 0.376502 GTAGACCACCTAGCGACGAC 59.623 60.000 0.00 0.00 0.00 4.34
174 183 1.086067 CGTAGACCACCTAGCGACGA 61.086 60.000 0.00 0.00 0.00 4.20
175 184 1.351012 CGTAGACCACCTAGCGACG 59.649 63.158 0.00 0.00 0.00 5.12
176 185 0.745845 TCCGTAGACCACCTAGCGAC 60.746 60.000 0.00 0.00 0.00 5.19
177 186 0.182061 ATCCGTAGACCACCTAGCGA 59.818 55.000 0.00 0.00 0.00 4.93
178 187 1.888215 TATCCGTAGACCACCTAGCG 58.112 55.000 0.00 0.00 0.00 4.26
179 188 2.492484 CCATATCCGTAGACCACCTAGC 59.508 54.545 0.00 0.00 0.00 3.42
180 189 4.030314 TCCATATCCGTAGACCACCTAG 57.970 50.000 0.00 0.00 0.00 3.02
181 190 4.202641 ACATCCATATCCGTAGACCACCTA 60.203 45.833 0.00 0.00 0.00 3.08
182 191 3.165875 CATCCATATCCGTAGACCACCT 58.834 50.000 0.00 0.00 0.00 4.00
183 192 2.897969 ACATCCATATCCGTAGACCACC 59.102 50.000 0.00 0.00 0.00 4.61
184 193 5.717078 TTACATCCATATCCGTAGACCAC 57.283 43.478 0.00 0.00 0.00 4.16
185 194 6.928348 AATTACATCCATATCCGTAGACCA 57.072 37.500 0.00 0.00 0.00 4.02
186 195 8.504005 CAAAAATTACATCCATATCCGTAGACC 58.496 37.037 0.00 0.00 0.00 3.85
187 196 9.052759 ACAAAAATTACATCCATATCCGTAGAC 57.947 33.333 0.00 0.00 0.00 2.59
188 197 9.621629 AACAAAAATTACATCCATATCCGTAGA 57.378 29.630 0.00 0.00 0.00 2.59
191 200 8.966868 AGAAACAAAAATTACATCCATATCCGT 58.033 29.630 0.00 0.00 0.00 4.69
192 201 9.236691 CAGAAACAAAAATTACATCCATATCCG 57.763 33.333 0.00 0.00 0.00 4.18
193 202 9.533253 CCAGAAACAAAAATTACATCCATATCC 57.467 33.333 0.00 0.00 0.00 2.59
195 204 9.874205 CACCAGAAACAAAAATTACATCCATAT 57.126 29.630 0.00 0.00 0.00 1.78
196 205 8.865090 ACACCAGAAACAAAAATTACATCCATA 58.135 29.630 0.00 0.00 0.00 2.74
197 206 7.734942 ACACCAGAAACAAAAATTACATCCAT 58.265 30.769 0.00 0.00 0.00 3.41
198 207 7.118496 ACACCAGAAACAAAAATTACATCCA 57.882 32.000 0.00 0.00 0.00 3.41
199 208 8.334632 CAAACACCAGAAACAAAAATTACATCC 58.665 33.333 0.00 0.00 0.00 3.51
200 209 8.878769 ACAAACACCAGAAACAAAAATTACATC 58.121 29.630 0.00 0.00 0.00 3.06
201 210 8.785329 ACAAACACCAGAAACAAAAATTACAT 57.215 26.923 0.00 0.00 0.00 2.29
202 211 8.499162 CAACAAACACCAGAAACAAAAATTACA 58.501 29.630 0.00 0.00 0.00 2.41
203 212 8.499967 ACAACAAACACCAGAAACAAAAATTAC 58.500 29.630 0.00 0.00 0.00 1.89
204 213 8.608844 ACAACAAACACCAGAAACAAAAATTA 57.391 26.923 0.00 0.00 0.00 1.40
205 214 7.503521 ACAACAAACACCAGAAACAAAAATT 57.496 28.000 0.00 0.00 0.00 1.82
206 215 8.785329 ATACAACAAACACCAGAAACAAAAAT 57.215 26.923 0.00 0.00 0.00 1.82
207 216 8.499162 CAATACAACAAACACCAGAAACAAAAA 58.501 29.630 0.00 0.00 0.00 1.94
208 217 7.360438 GCAATACAACAAACACCAGAAACAAAA 60.360 33.333 0.00 0.00 0.00 2.44
209 218 6.091441 GCAATACAACAAACACCAGAAACAAA 59.909 34.615 0.00 0.00 0.00 2.83
210 219 5.578727 GCAATACAACAAACACCAGAAACAA 59.421 36.000 0.00 0.00 0.00 2.83
211 220 5.105752 GCAATACAACAAACACCAGAAACA 58.894 37.500 0.00 0.00 0.00 2.83
212 221 4.506288 GGCAATACAACAAACACCAGAAAC 59.494 41.667 0.00 0.00 0.00 2.78
213 222 4.160439 TGGCAATACAACAAACACCAGAAA 59.840 37.500 0.00 0.00 0.00 2.52
214 223 3.701542 TGGCAATACAACAAACACCAGAA 59.298 39.130 0.00 0.00 0.00 3.02
215 224 3.291584 TGGCAATACAACAAACACCAGA 58.708 40.909 0.00 0.00 0.00 3.86
216 225 3.724508 TGGCAATACAACAAACACCAG 57.275 42.857 0.00 0.00 0.00 4.00
217 226 3.638627 TCATGGCAATACAACAAACACCA 59.361 39.130 0.00 0.00 0.00 4.17
218 227 4.250116 TCATGGCAATACAACAAACACC 57.750 40.909 0.00 0.00 0.00 4.16
219 228 4.558470 CGATCATGGCAATACAACAAACAC 59.442 41.667 0.00 0.00 0.00 3.32
220 229 4.457257 TCGATCATGGCAATACAACAAACA 59.543 37.500 0.00 0.00 0.00 2.83
221 230 4.980590 TCGATCATGGCAATACAACAAAC 58.019 39.130 0.00 0.00 0.00 2.93
222 231 5.635417 TTCGATCATGGCAATACAACAAA 57.365 34.783 0.00 0.00 0.00 2.83
223 232 5.635417 TTTCGATCATGGCAATACAACAA 57.365 34.783 0.00 0.00 0.00 2.83
224 233 5.635417 TTTTCGATCATGGCAATACAACA 57.365 34.783 0.00 0.00 0.00 3.33
225 234 6.264832 TCATTTTCGATCATGGCAATACAAC 58.735 36.000 0.00 0.00 0.00 3.32
226 235 6.448207 TCATTTTCGATCATGGCAATACAA 57.552 33.333 0.00 0.00 0.00 2.41
227 236 6.448207 TTCATTTTCGATCATGGCAATACA 57.552 33.333 0.00 0.00 0.00 2.29
228 237 8.506437 TCTATTCATTTTCGATCATGGCAATAC 58.494 33.333 0.00 0.00 0.00 1.89
229 238 8.620116 TCTATTCATTTTCGATCATGGCAATA 57.380 30.769 0.00 3.01 0.00 1.90
230 239 7.514784 TCTATTCATTTTCGATCATGGCAAT 57.485 32.000 0.00 2.19 0.00 3.56
231 240 6.940831 TCTATTCATTTTCGATCATGGCAA 57.059 33.333 0.00 0.00 0.00 4.52
232 241 7.364970 CAATCTATTCATTTTCGATCATGGCA 58.635 34.615 0.00 0.00 0.00 4.92
233 242 6.805271 CCAATCTATTCATTTTCGATCATGGC 59.195 38.462 0.00 0.00 0.00 4.40
234 243 8.102800 TCCAATCTATTCATTTTCGATCATGG 57.897 34.615 0.00 0.00 0.00 3.66
235 244 9.608617 CTTCCAATCTATTCATTTTCGATCATG 57.391 33.333 0.00 0.00 0.00 3.07
236 245 9.347240 ACTTCCAATCTATTCATTTTCGATCAT 57.653 29.630 0.00 0.00 0.00 2.45
237 246 8.737168 ACTTCCAATCTATTCATTTTCGATCA 57.263 30.769 0.00 0.00 0.00 2.92
243 252 9.423061 CGGAAAAACTTCCAATCTATTCATTTT 57.577 29.630 4.85 0.00 41.16 1.82
244 253 8.034804 CCGGAAAAACTTCCAATCTATTCATTT 58.965 33.333 0.00 0.00 41.16 2.32
245 254 7.396055 TCCGGAAAAACTTCCAATCTATTCATT 59.604 33.333 0.00 0.00 41.16 2.57
246 255 6.889722 TCCGGAAAAACTTCCAATCTATTCAT 59.110 34.615 0.00 0.00 41.16 2.57
247 256 6.242396 TCCGGAAAAACTTCCAATCTATTCA 58.758 36.000 0.00 0.00 41.16 2.57
248 257 6.598064 TCTCCGGAAAAACTTCCAATCTATTC 59.402 38.462 5.23 0.00 41.16 1.75
249 258 6.481643 TCTCCGGAAAAACTTCCAATCTATT 58.518 36.000 5.23 0.00 41.16 1.73
250 259 6.062258 TCTCCGGAAAAACTTCCAATCTAT 57.938 37.500 5.23 0.00 41.16 1.98
251 260 5.492855 TCTCCGGAAAAACTTCCAATCTA 57.507 39.130 5.23 0.00 41.16 1.98
252 261 4.367039 TCTCCGGAAAAACTTCCAATCT 57.633 40.909 5.23 0.00 41.16 2.40
253 262 5.447624 TTTCTCCGGAAAAACTTCCAATC 57.552 39.130 5.23 0.00 41.16 2.67
254 263 5.862678 TTTTCTCCGGAAAAACTTCCAAT 57.137 34.783 5.23 0.00 45.07 3.16
278 287 4.258543 CTCAAATGCCATTGCCTTCATTT 58.741 39.130 0.00 0.00 39.04 2.32
412 438 6.128849 CGGATGGAGTTTAAACTTTGCATTTG 60.129 38.462 21.40 10.03 39.88 2.32
413 439 5.925969 CGGATGGAGTTTAAACTTTGCATTT 59.074 36.000 21.40 3.93 39.88 2.32
414 440 5.010617 ACGGATGGAGTTTAAACTTTGCATT 59.989 36.000 21.40 4.90 39.88 3.56
415 441 4.522789 ACGGATGGAGTTTAAACTTTGCAT 59.477 37.500 21.40 16.43 39.88 3.96
416 442 3.886505 ACGGATGGAGTTTAAACTTTGCA 59.113 39.130 21.40 12.53 39.88 4.08
417 443 4.499037 ACGGATGGAGTTTAAACTTTGC 57.501 40.909 21.40 13.40 39.88 3.68
481 507 6.935240 TCAGAGTAGAGGGAAATTTTCTGA 57.065 37.500 9.73 9.73 37.92 3.27
496 522 6.607198 AGGAAGGAGAGAAGATTTCAGAGTAG 59.393 42.308 0.00 0.00 0.00 2.57
593 619 5.179533 GGGTTGTTTTGCCTTTTCTTTGTA 58.820 37.500 0.00 0.00 0.00 2.41
594 620 4.006989 GGGTTGTTTTGCCTTTTCTTTGT 58.993 39.130 0.00 0.00 0.00 2.83
595 621 3.063316 CGGGTTGTTTTGCCTTTTCTTTG 59.937 43.478 0.00 0.00 0.00 2.77
596 622 3.266636 CGGGTTGTTTTGCCTTTTCTTT 58.733 40.909 0.00 0.00 0.00 2.52
597 623 2.235155 ACGGGTTGTTTTGCCTTTTCTT 59.765 40.909 0.00 0.00 0.00 2.52
598 624 1.828595 ACGGGTTGTTTTGCCTTTTCT 59.171 42.857 0.00 0.00 0.00 2.52
599 625 2.198406 GACGGGTTGTTTTGCCTTTTC 58.802 47.619 0.00 0.00 0.00 2.29
600 626 1.550976 TGACGGGTTGTTTTGCCTTTT 59.449 42.857 0.00 0.00 0.00 2.27
601 627 1.187087 TGACGGGTTGTTTTGCCTTT 58.813 45.000 0.00 0.00 0.00 3.11
602 628 1.136110 CTTGACGGGTTGTTTTGCCTT 59.864 47.619 0.00 0.00 0.00 4.35
603 629 0.744281 CTTGACGGGTTGTTTTGCCT 59.256 50.000 0.00 0.00 0.00 4.75
604 630 0.741915 TCTTGACGGGTTGTTTTGCC 59.258 50.000 0.00 0.00 0.00 4.52
605 631 2.570442 TTCTTGACGGGTTGTTTTGC 57.430 45.000 0.00 0.00 0.00 3.68
627 653 7.394641 TCCCTTGTTTATTTGTTTTGCCTTTTT 59.605 29.630 0.00 0.00 0.00 1.94
656 682 2.066262 ACATGATTGACCGTGAACGAC 58.934 47.619 4.03 0.00 43.02 4.34
658 684 2.347452 GGTACATGATTGACCGTGAACG 59.653 50.000 0.00 0.00 39.44 3.95
707 733 5.712917 GTCATCGGAGGATATTCTTAGGACT 59.287 44.000 0.00 0.00 0.00 3.85
734 760 4.043200 GGGCGGCACTGTTTGAGC 62.043 66.667 12.47 0.00 0.00 4.26
1023 1049 1.098712 CGGAGAAGACGAGGAGGAGG 61.099 65.000 0.00 0.00 0.00 4.30
1024 1050 1.720694 GCGGAGAAGACGAGGAGGAG 61.721 65.000 0.00 0.00 0.00 3.69
1025 1051 1.749638 GCGGAGAAGACGAGGAGGA 60.750 63.158 0.00 0.00 0.00 3.71
1110 1136 0.107703 GGCTGTGCTGCTGTGGTATA 60.108 55.000 0.00 0.00 0.00 1.47
1111 1137 1.377725 GGCTGTGCTGCTGTGGTAT 60.378 57.895 0.00 0.00 0.00 2.73
1112 1138 2.032528 GGCTGTGCTGCTGTGGTA 59.967 61.111 0.00 0.00 0.00 3.25
1113 1139 4.962836 GGGCTGTGCTGCTGTGGT 62.963 66.667 0.00 0.00 0.00 4.16
1115 1141 4.655647 AGGGGCTGTGCTGCTGTG 62.656 66.667 0.00 0.00 0.00 3.66
1116 1142 4.655647 CAGGGGCTGTGCTGCTGT 62.656 66.667 0.00 0.00 0.00 4.40
1117 1143 3.855503 TTCAGGGGCTGTGCTGCTG 62.856 63.158 0.00 0.00 32.61 4.41
1167 1193 3.641436 ACTGAAAACCTGTCCCCAAATTC 59.359 43.478 0.00 0.00 0.00 2.17
1173 1199 2.623416 CAAGAACTGAAAACCTGTCCCC 59.377 50.000 0.00 0.00 0.00 4.81
1181 1207 1.683385 AGCTGCCCAAGAACTGAAAAC 59.317 47.619 0.00 0.00 0.00 2.43
1202 1229 0.179076 CTATGCAGTCATGGCGACCA 60.179 55.000 0.00 1.01 46.69 4.02
1206 1233 0.654160 CACACTATGCAGTCATGGCG 59.346 55.000 0.00 0.00 34.89 5.69
1240 1267 0.389817 TCAGCCAATCGGTCGAACAG 60.390 55.000 0.00 0.00 33.28 3.16
1309 1336 3.369546 ACAGCAAAATTAAGCGTGCTT 57.630 38.095 12.30 12.30 44.79 3.91
1351 1378 7.391833 AGAAAGTCCATATCAGGTCAGAAAAAC 59.608 37.037 0.00 0.00 0.00 2.43
1684 1724 4.587262 ACACCAGCGTATATCAGATTGGTA 59.413 41.667 2.43 0.00 35.80 3.25
1699 1739 2.047844 CCTGTCCAGACACCAGCG 60.048 66.667 0.00 0.00 36.21 5.18
1728 1768 4.569015 GGAATTGGCCCTTGTAGTTCCTTA 60.569 45.833 0.00 0.00 32.83 2.69
1764 1804 1.544691 TCAGTTAGCTCCGTCAGGTTC 59.455 52.381 0.00 0.00 39.05 3.62
1844 1884 8.380099 ACCCACAAGTAATAAGAACACATAGAA 58.620 33.333 0.00 0.00 0.00 2.10
1846 1886 7.414098 GCACCCACAAGTAATAAGAACACATAG 60.414 40.741 0.00 0.00 0.00 2.23
1847 1887 6.373216 GCACCCACAAGTAATAAGAACACATA 59.627 38.462 0.00 0.00 0.00 2.29
2008 2048 1.132657 TCCAACCAGTAAGACCCAGGA 60.133 52.381 0.00 0.00 0.00 3.86
2015 2055 3.039011 GCCTAGGATCCAACCAGTAAGA 58.961 50.000 14.75 0.00 0.00 2.10
2070 2273 5.180868 ACAGAATGATCAGAACTGAAAGCAC 59.819 40.000 23.66 2.17 40.96 4.40
2071 2274 5.311265 ACAGAATGATCAGAACTGAAAGCA 58.689 37.500 23.66 7.91 40.96 3.91
2270 2528 7.269316 TCAGCAGAATTATGTCACCGTTAATA 58.731 34.615 1.46 0.00 0.00 0.98
2431 2689 5.514274 TGAAACAAGTGAAGAACAATCCC 57.486 39.130 0.00 0.00 0.00 3.85
2551 2890 3.061295 CGCAACATGAGCTAACTACACAG 59.939 47.826 0.00 0.00 0.00 3.66
2563 2902 1.532437 TGAAGAGTTGCGCAACATGAG 59.468 47.619 44.07 0.00 43.47 2.90
2598 2937 2.159558 GCACATGCACAGATGAACTCAG 60.160 50.000 0.00 0.00 41.59 3.35
2694 3033 8.084073 CCAGTATGAAGAAACACATTCATTTGT 58.916 33.333 5.81 0.00 42.11 2.83
2717 3056 2.414994 ACAGGATCTGCATTGACCAG 57.585 50.000 0.00 0.00 34.37 4.00
2788 3127 4.943705 GCACTCTGGATTGATTTGTAGGAA 59.056 41.667 0.00 0.00 0.00 3.36
2809 3148 7.040494 TCAGTTTCTTGAAATGATTTGTTGCA 58.960 30.769 0.00 0.00 37.42 4.08
2821 3160 4.018415 CCCCCTCCTATCAGTTTCTTGAAA 60.018 45.833 0.00 0.00 0.00 2.69
2908 3247 0.179116 CCTGAGTCGATGCAGGTGAG 60.179 60.000 21.78 3.70 45.21 3.51
3060 3399 5.909610 GCATAGATTACGAAAAATCACTGGC 59.090 40.000 10.79 6.47 38.16 4.85
3063 3402 7.148255 TGCTTGCATAGATTACGAAAAATCACT 60.148 33.333 10.79 0.00 38.16 3.41
3137 3476 7.944729 ACTAAGTAACTGAAATGGCATCAAT 57.055 32.000 0.00 0.00 0.00 2.57
3176 3515 2.978010 CCGCAAAACCTCACGGCT 60.978 61.111 0.00 0.00 39.08 5.52
3318 3657 7.795431 TTGATAAATTCAGTGAATTTCGTGC 57.205 32.000 35.60 25.14 45.45 5.34
3338 3685 1.135972 GCGCGAACTGTGTCAATTGAT 60.136 47.619 12.10 0.00 0.00 2.57
3354 3701 1.136336 GTTAGAGGAACTTTGTGCGCG 60.136 52.381 0.00 0.00 41.55 6.86
3504 3851 0.238817 CGTAGAGGCGATCCTGTAGC 59.761 60.000 0.00 0.00 44.46 3.58
3583 3930 5.076182 TGATGCCTCACCTAAATGAAACAA 58.924 37.500 0.00 0.00 0.00 2.83
3807 4160 7.647907 AATAACTCAAAAGAAGCATTTGCAG 57.352 32.000 5.20 0.00 45.16 4.41
3954 4307 0.475044 ACCCAAAGTCGGCAACCTTA 59.525 50.000 0.00 0.00 0.00 2.69
4147 4503 7.591165 CAATCAGATAGATGGTAAAGCAATGG 58.409 38.462 0.00 0.00 36.96 3.16
4164 4520 7.180322 AGATATGGAGTATTCGCAATCAGAT 57.820 36.000 0.00 0.00 0.00 2.90
4227 4583 1.300620 CCCGAAGCTGAACACGTCA 60.301 57.895 0.00 0.00 34.17 4.35
4338 4694 1.478631 TGGTTTGTGATGGTGTGCAA 58.521 45.000 0.00 0.00 0.00 4.08
4351 4707 7.009815 CAGCTGTAGATAAAAATGCATGGTTTG 59.990 37.037 15.52 2.52 0.00 2.93
4389 4745 5.998981 TGGAACAACCGTGAAATGTATAACT 59.001 36.000 0.00 0.00 42.61 2.24
4400 4759 2.421751 TTTTCCTGGAACAACCGTGA 57.578 45.000 9.04 0.00 42.61 4.35
4405 4764 5.344884 TGTTTTCGATTTTCCTGGAACAAC 58.655 37.500 9.04 0.33 38.70 3.32
4412 4771 7.414436 TGAAGTTACTGTTTTCGATTTTCCTG 58.586 34.615 0.00 0.00 0.00 3.86
4420 4779 6.971527 TGAAACTGAAGTTACTGTTTTCGA 57.028 33.333 0.00 0.00 40.23 3.71
4421 4780 9.878599 ATAATGAAACTGAAGTTACTGTTTTCG 57.121 29.630 0.00 0.00 40.23 3.46
4457 4816 3.257469 TGGATGAGCTGATGACACTTC 57.743 47.619 0.00 0.00 0.00 3.01
4472 4831 5.657826 TGTCCATGGTGTAAAATTGGATG 57.342 39.130 12.58 0.00 38.64 3.51
4487 4846 3.436704 GTGTAACAGTGACCATGTCCATG 59.563 47.826 0.00 0.14 36.32 3.66
4488 4847 3.072330 TGTGTAACAGTGACCATGTCCAT 59.928 43.478 0.00 0.00 45.67 3.41
4489 4848 2.436173 TGTGTAACAGTGACCATGTCCA 59.564 45.455 0.00 0.00 45.67 4.02
4490 4849 3.120321 TGTGTAACAGTGACCATGTCC 57.880 47.619 0.00 0.00 45.67 4.02
4559 4918 1.064758 CAGTACTGCCCCTTTATGCCA 60.065 52.381 10.54 0.00 0.00 4.92
4773 5132 2.505498 CCGACGCGAACATCTTCCG 61.505 63.158 15.93 1.56 0.00 4.30
4805 5164 4.699522 GCGAACTTGGCCGGGTCT 62.700 66.667 2.18 0.00 0.00 3.85
4905 5269 6.208797 CCTTCTGAGACCACCATATATTACGA 59.791 42.308 0.00 0.00 0.00 3.43
4925 5289 1.613630 ACGAGACCATGGGCCTTCT 60.614 57.895 16.13 8.33 0.00 2.85
4926 5290 1.153349 GACGAGACCATGGGCCTTC 60.153 63.158 16.13 5.17 0.00 3.46
4927 5291 1.613630 AGACGAGACCATGGGCCTT 60.614 57.895 16.13 0.00 0.00 4.35
4928 5292 2.039624 AGACGAGACCATGGGCCT 59.960 61.111 16.13 11.64 0.00 5.19
4929 5293 1.690219 ATGAGACGAGACCATGGGCC 61.690 60.000 16.13 4.79 0.00 5.80
4930 5294 0.531532 CATGAGACGAGACCATGGGC 60.532 60.000 18.09 14.76 35.34 5.36
4931 5295 3.675086 CATGAGACGAGACCATGGG 57.325 57.895 18.09 0.00 35.34 4.00
4933 5297 2.102084 ACATCCATGAGACGAGACCATG 59.898 50.000 0.00 0.00 37.87 3.66
4934 5298 2.102084 CACATCCATGAGACGAGACCAT 59.898 50.000 0.00 0.00 0.00 3.55
4935 5299 1.478105 CACATCCATGAGACGAGACCA 59.522 52.381 0.00 0.00 0.00 4.02
4936 5300 1.751351 TCACATCCATGAGACGAGACC 59.249 52.381 0.00 0.00 0.00 3.85
4937 5301 3.379240 CATCACATCCATGAGACGAGAC 58.621 50.000 0.00 0.00 30.44 3.36
4938 5302 2.363359 CCATCACATCCATGAGACGAGA 59.637 50.000 0.00 0.00 30.44 4.04
4939 5303 2.102084 ACCATCACATCCATGAGACGAG 59.898 50.000 0.00 0.00 30.44 4.18
4940 5304 2.110578 ACCATCACATCCATGAGACGA 58.889 47.619 0.00 0.00 30.44 4.20
4941 5305 2.609427 ACCATCACATCCATGAGACG 57.391 50.000 0.00 0.00 30.44 4.18
4967 5331 2.093128 ACAAACTCCGGTTGTGTCTTCT 60.093 45.455 8.04 0.00 35.63 2.85
4977 5341 2.281276 GCGGGAACAAACTCCGGT 60.281 61.111 0.00 0.00 43.55 5.28
4987 5352 1.031571 TTCATGCCATCTGCGGGAAC 61.032 55.000 0.00 0.00 45.60 3.62
4989 5354 0.820482 CATTCATGCCATCTGCGGGA 60.820 55.000 0.00 0.00 45.60 5.14
5000 5365 1.450531 CTCCCTTCGGCCATTCATGC 61.451 60.000 2.24 0.00 0.00 4.06
5006 5371 1.764054 CTCCTCTCCCTTCGGCCAT 60.764 63.158 2.24 0.00 0.00 4.40
5014 5379 1.074623 CTCCATGCCTCCTCTCCCT 60.075 63.158 0.00 0.00 0.00 4.20
5027 5392 1.997874 GCCTGTGTCCCCTCTCCAT 60.998 63.158 0.00 0.00 0.00 3.41
5028 5393 2.607750 GCCTGTGTCCCCTCTCCA 60.608 66.667 0.00 0.00 0.00 3.86
5029 5394 3.403558 GGCCTGTGTCCCCTCTCC 61.404 72.222 0.00 0.00 0.00 3.71
5030 5395 1.997874 ATGGCCTGTGTCCCCTCTC 60.998 63.158 3.32 0.00 0.00 3.20
5031 5396 2.125912 ATGGCCTGTGTCCCCTCT 59.874 61.111 3.32 0.00 0.00 3.69
5032 5397 2.273449 CATGGCCTGTGTCCCCTC 59.727 66.667 3.32 0.00 0.00 4.30
5033 5398 4.052518 GCATGGCCTGTGTCCCCT 62.053 66.667 3.32 0.00 0.00 4.79
5034 5399 4.365111 TGCATGGCCTGTGTCCCC 62.365 66.667 3.32 0.00 0.00 4.81
5035 5400 2.753043 CTGCATGGCCTGTGTCCC 60.753 66.667 3.32 0.00 0.00 4.46
5036 5401 0.322456 TAACTGCATGGCCTGTGTCC 60.322 55.000 3.32 0.00 0.00 4.02
5057 5422 4.081030 CTCGCTGCAACTGCCGTG 62.081 66.667 0.00 0.00 41.18 4.94
5060 5425 4.704833 TCCCTCGCTGCAACTGCC 62.705 66.667 0.00 0.00 41.18 4.85
5061 5426 2.669569 TTCCCTCGCTGCAACTGC 60.670 61.111 0.00 0.00 42.50 4.40
5062 5427 0.886490 AACTTCCCTCGCTGCAACTG 60.886 55.000 0.00 0.00 0.00 3.16
5063 5428 0.179018 AAACTTCCCTCGCTGCAACT 60.179 50.000 0.00 0.00 0.00 3.16
5064 5429 0.668535 AAAACTTCCCTCGCTGCAAC 59.331 50.000 0.00 0.00 0.00 4.17
5076 5449 4.456222 GCTTTGTCTCTAGGGGAAAACTTC 59.544 45.833 0.00 0.00 0.00 3.01
5089 5462 0.403271 ACTGCCCATGCTTTGTCTCT 59.597 50.000 0.00 0.00 38.71 3.10
5149 5522 0.521291 ATTGCACACACGCATGGTAC 59.479 50.000 0.00 0.00 42.62 3.34
5150 5523 0.520847 CATTGCACACACGCATGGTA 59.479 50.000 0.00 0.00 42.62 3.25
5151 5524 1.286570 CATTGCACACACGCATGGT 59.713 52.632 0.00 0.00 42.62 3.55
5152 5525 2.089936 GCATTGCACACACGCATGG 61.090 57.895 3.15 0.00 42.62 3.66
5153 5526 0.940047 TTGCATTGCACACACGCATG 60.940 50.000 11.66 0.00 42.62 4.06
5154 5527 0.940519 GTTGCATTGCACACACGCAT 60.941 50.000 11.66 0.00 42.62 4.73
5155 5528 1.588403 GTTGCATTGCACACACGCA 60.588 52.632 11.66 0.00 38.71 5.24
5156 5529 0.040514 TAGTTGCATTGCACACACGC 60.041 50.000 11.66 0.00 38.71 5.34
5157 5530 2.617250 ATAGTTGCATTGCACACACG 57.383 45.000 11.66 0.00 38.71 4.49
5158 5531 4.164822 AGAATAGTTGCATTGCACACAC 57.835 40.909 11.66 7.35 38.71 3.82
5159 5532 4.852134 AAGAATAGTTGCATTGCACACA 57.148 36.364 11.66 0.00 38.71 3.72
5160 5533 4.386652 CCAAAGAATAGTTGCATTGCACAC 59.613 41.667 11.66 12.47 38.71 3.82
5166 5539 6.942576 ACAGTAGTCCAAAGAATAGTTGCATT 59.057 34.615 0.00 0.00 0.00 3.56
5338 5722 3.933861 ACAAAAGTGAACAGAGGGAGT 57.066 42.857 0.00 0.00 0.00 3.85
5339 5723 5.368989 ACTTACAAAAGTGAACAGAGGGAG 58.631 41.667 0.00 0.00 44.40 4.30
5340 5724 5.104693 TGACTTACAAAAGTGAACAGAGGGA 60.105 40.000 0.00 0.00 46.09 4.20
5341 5725 5.123227 TGACTTACAAAAGTGAACAGAGGG 58.877 41.667 0.00 0.00 46.09 4.30
5342 5726 6.867662 ATGACTTACAAAAGTGAACAGAGG 57.132 37.500 0.00 0.00 46.09 3.69
5346 5730 9.997482 GTCTTAAATGACTTACAAAAGTGAACA 57.003 29.630 0.00 0.00 46.09 3.18
5349 5733 9.997482 GTTGTCTTAAATGACTTACAAAAGTGA 57.003 29.630 0.00 0.00 46.09 3.41
5360 5744 9.736023 GTTCAATTTCAGTTGTCTTAAATGACT 57.264 29.630 0.00 0.00 37.79 3.41
5362 5746 9.734620 CAGTTCAATTTCAGTTGTCTTAAATGA 57.265 29.630 0.00 0.00 30.78 2.57
5363 5747 9.520204 ACAGTTCAATTTCAGTTGTCTTAAATG 57.480 29.630 0.00 0.00 30.78 2.32
5368 5752 9.573133 CTAAAACAGTTCAATTTCAGTTGTCTT 57.427 29.630 0.00 0.00 0.00 3.01
5369 5753 8.190784 CCTAAAACAGTTCAATTTCAGTTGTCT 58.809 33.333 0.00 0.00 0.00 3.41
5370 5754 7.973944 ACCTAAAACAGTTCAATTTCAGTTGTC 59.026 33.333 0.00 0.00 0.00 3.18
5371 5755 7.759433 CACCTAAAACAGTTCAATTTCAGTTGT 59.241 33.333 0.00 0.00 0.00 3.32
5372 5756 7.254084 GCACCTAAAACAGTTCAATTTCAGTTG 60.254 37.037 0.00 0.00 0.00 3.16
5373 5757 6.756542 GCACCTAAAACAGTTCAATTTCAGTT 59.243 34.615 0.00 0.00 0.00 3.16
5376 5760 6.127479 ACAGCACCTAAAACAGTTCAATTTCA 60.127 34.615 0.00 0.00 0.00 2.69
5377 5761 6.273071 ACAGCACCTAAAACAGTTCAATTTC 58.727 36.000 0.00 0.00 0.00 2.17
5378 5762 6.096846 AGACAGCACCTAAAACAGTTCAATTT 59.903 34.615 0.00 0.00 0.00 1.82
5379 5763 5.594317 AGACAGCACCTAAAACAGTTCAATT 59.406 36.000 0.00 0.00 0.00 2.32
5380 5764 5.133221 AGACAGCACCTAAAACAGTTCAAT 58.867 37.500 0.00 0.00 0.00 2.57
5381 5765 4.523083 AGACAGCACCTAAAACAGTTCAA 58.477 39.130 0.00 0.00 0.00 2.69
5382 5766 4.150897 AGACAGCACCTAAAACAGTTCA 57.849 40.909 0.00 0.00 0.00 3.18
5384 5768 7.068226 ACATTTAAGACAGCACCTAAAACAGTT 59.932 33.333 0.00 0.00 0.00 3.16
5385 5769 6.546034 ACATTTAAGACAGCACCTAAAACAGT 59.454 34.615 0.00 0.00 0.00 3.55
5386 5770 6.970484 ACATTTAAGACAGCACCTAAAACAG 58.030 36.000 0.00 0.00 0.00 3.16
5387 5771 6.770785 AGACATTTAAGACAGCACCTAAAACA 59.229 34.615 0.00 0.00 0.00 2.83
5388 5772 7.203255 AGACATTTAAGACAGCACCTAAAAC 57.797 36.000 0.00 0.00 0.00 2.43
5390 5774 8.911918 TTTAGACATTTAAGACAGCACCTAAA 57.088 30.769 0.00 0.00 0.00 1.85
5391 5775 8.780249 GTTTTAGACATTTAAGACAGCACCTAA 58.220 33.333 0.00 0.00 0.00 2.69
5392 5776 7.117236 CGTTTTAGACATTTAAGACAGCACCTA 59.883 37.037 0.00 0.00 0.00 3.08
5393 5777 6.073222 CGTTTTAGACATTTAAGACAGCACCT 60.073 38.462 0.00 0.00 0.00 4.00
5394 5778 6.077838 CGTTTTAGACATTTAAGACAGCACC 58.922 40.000 0.00 0.00 0.00 5.01
5395 5779 6.656003 ACGTTTTAGACATTTAAGACAGCAC 58.344 36.000 0.00 0.00 0.00 4.40
5396 5780 6.704493 AGACGTTTTAGACATTTAAGACAGCA 59.296 34.615 0.00 0.00 0.00 4.41
5397 5781 7.118422 AGACGTTTTAGACATTTAAGACAGC 57.882 36.000 0.00 0.00 0.00 4.40
5399 5783 9.531942 TGTAAGACGTTTTAGACATTTAAGACA 57.468 29.630 0.00 0.00 0.00 3.41
5408 5792 9.493206 GTTCATTTTTGTAAGACGTTTTAGACA 57.507 29.630 0.00 0.00 0.00 3.41
5409 5793 8.667204 CGTTCATTTTTGTAAGACGTTTTAGAC 58.333 33.333 0.00 0.00 0.00 2.59
5410 5794 7.851963 CCGTTCATTTTTGTAAGACGTTTTAGA 59.148 33.333 0.00 0.00 0.00 2.10
5413 5797 6.553524 TCCGTTCATTTTTGTAAGACGTTTT 58.446 32.000 0.00 0.00 0.00 2.43
5414 5798 6.121613 TCCGTTCATTTTTGTAAGACGTTT 57.878 33.333 0.00 0.00 0.00 3.60
5415 5799 5.277634 CCTCCGTTCATTTTTGTAAGACGTT 60.278 40.000 0.00 0.00 0.00 3.99
5416 5800 4.212636 CCTCCGTTCATTTTTGTAAGACGT 59.787 41.667 0.00 0.00 0.00 4.34
5418 5802 4.758165 TCCCTCCGTTCATTTTTGTAAGAC 59.242 41.667 0.00 0.00 0.00 3.01
5419 5803 4.975631 TCCCTCCGTTCATTTTTGTAAGA 58.024 39.130 0.00 0.00 0.00 2.10
5421 5805 4.721132 ACTCCCTCCGTTCATTTTTGTAA 58.279 39.130 0.00 0.00 0.00 2.41
5422 5806 4.360951 ACTCCCTCCGTTCATTTTTGTA 57.639 40.909 0.00 0.00 0.00 2.41
5423 5807 3.223674 ACTCCCTCCGTTCATTTTTGT 57.776 42.857 0.00 0.00 0.00 2.83
5424 5808 4.324267 AGTACTCCCTCCGTTCATTTTTG 58.676 43.478 0.00 0.00 0.00 2.44
5425 5809 4.635699 AGTACTCCCTCCGTTCATTTTT 57.364 40.909 0.00 0.00 0.00 1.94
5426 5810 4.635699 AAGTACTCCCTCCGTTCATTTT 57.364 40.909 0.00 0.00 0.00 1.82
5427 5811 4.635699 AAAGTACTCCCTCCGTTCATTT 57.364 40.909 0.00 0.00 0.00 2.32
5428 5812 4.635699 AAAAGTACTCCCTCCGTTCATT 57.364 40.909 0.00 0.00 0.00 2.57
5472 6581 4.152759 TCGCAAAACCTATGTTTCGTAAGG 59.847 41.667 0.00 0.00 43.80 2.69
5500 6749 3.084786 AGGAGTATTTTGGCACTGCTTC 58.915 45.455 0.00 0.00 40.10 3.86
5610 6859 5.642063 TGGCTCTGTAACATTTACTAGTTGC 59.358 40.000 0.00 0.00 0.00 4.17
5635 6884 2.880890 AGATTTGCTTAGCCGGCTATTG 59.119 45.455 35.60 29.01 0.00 1.90
5664 6913 2.027192 AGTTGTGGGTAGTGGCAGTATG 60.027 50.000 5.16 0.00 40.87 2.39
5665 6914 2.266279 AGTTGTGGGTAGTGGCAGTAT 58.734 47.619 5.16 0.00 0.00 2.12
5666 6915 1.724545 AGTTGTGGGTAGTGGCAGTA 58.275 50.000 0.00 0.00 0.00 2.74
5667 6916 1.623811 CTAGTTGTGGGTAGTGGCAGT 59.376 52.381 0.00 0.00 0.00 4.40
5668 6917 1.623811 ACTAGTTGTGGGTAGTGGCAG 59.376 52.381 0.00 0.00 0.00 4.85
5669 6918 1.724545 ACTAGTTGTGGGTAGTGGCA 58.275 50.000 0.00 0.00 0.00 4.92
5670 6919 3.967332 TTACTAGTTGTGGGTAGTGGC 57.033 47.619 0.00 0.00 31.79 5.01
5671 6920 5.801380 ACATTTACTAGTTGTGGGTAGTGG 58.199 41.667 0.00 0.00 31.79 4.00
5672 6921 7.874016 TGTAACATTTACTAGTTGTGGGTAGTG 59.126 37.037 0.00 0.00 31.79 2.74
5673 6922 7.965718 TGTAACATTTACTAGTTGTGGGTAGT 58.034 34.615 0.00 0.00 33.92 2.73
5674 6923 8.308931 TCTGTAACATTTACTAGTTGTGGGTAG 58.691 37.037 0.00 0.00 0.00 3.18
5675 6924 8.192743 TCTGTAACATTTACTAGTTGTGGGTA 57.807 34.615 0.00 0.00 0.00 3.69
5676 6925 7.069877 TCTGTAACATTTACTAGTTGTGGGT 57.930 36.000 0.00 0.00 0.00 4.51
5677 6926 6.092259 GCTCTGTAACATTTACTAGTTGTGGG 59.908 42.308 0.00 0.00 0.00 4.61
5678 6927 6.092259 GGCTCTGTAACATTTACTAGTTGTGG 59.908 42.308 0.00 0.00 0.00 4.17
5679 6928 6.649141 TGGCTCTGTAACATTTACTAGTTGTG 59.351 38.462 0.00 0.32 0.00 3.33
5680 6929 6.649557 GTGGCTCTGTAACATTTACTAGTTGT 59.350 38.462 0.00 0.00 0.00 3.32
5681 6930 6.649141 TGTGGCTCTGTAACATTTACTAGTTG 59.351 38.462 0.00 0.00 0.00 3.16
5682 6931 6.765403 TGTGGCTCTGTAACATTTACTAGTT 58.235 36.000 0.00 0.00 0.00 2.24
5683 6932 6.354794 TGTGGCTCTGTAACATTTACTAGT 57.645 37.500 0.00 0.00 0.00 2.57
5684 6933 7.849804 ATTGTGGCTCTGTAACATTTACTAG 57.150 36.000 0.00 0.00 0.00 2.57
5685 6934 7.767198 GGTATTGTGGCTCTGTAACATTTACTA 59.233 37.037 0.00 0.00 0.00 1.82
5686 6935 6.598064 GGTATTGTGGCTCTGTAACATTTACT 59.402 38.462 0.00 0.00 0.00 2.24
5687 6936 6.183360 GGGTATTGTGGCTCTGTAACATTTAC 60.183 42.308 0.00 0.00 0.00 2.01
5688 6937 5.883673 GGGTATTGTGGCTCTGTAACATTTA 59.116 40.000 0.00 0.00 0.00 1.40
5689 6938 4.705023 GGGTATTGTGGCTCTGTAACATTT 59.295 41.667 0.00 0.00 0.00 2.32
5690 6939 4.270008 GGGTATTGTGGCTCTGTAACATT 58.730 43.478 0.00 0.00 0.00 2.71
5691 6940 3.681594 CGGGTATTGTGGCTCTGTAACAT 60.682 47.826 0.00 0.00 0.00 2.71
5692 6941 2.354303 CGGGTATTGTGGCTCTGTAACA 60.354 50.000 0.00 0.00 0.00 2.41
5693 6942 2.277084 CGGGTATTGTGGCTCTGTAAC 58.723 52.381 0.00 0.00 0.00 2.50
5694 6943 1.208535 CCGGGTATTGTGGCTCTGTAA 59.791 52.381 0.00 0.00 0.00 2.41
5695 6944 0.828022 CCGGGTATTGTGGCTCTGTA 59.172 55.000 0.00 0.00 0.00 2.74
5696 6945 1.602237 CCGGGTATTGTGGCTCTGT 59.398 57.895 0.00 0.00 0.00 3.41
5697 6946 1.819632 GCCGGGTATTGTGGCTCTG 60.820 63.158 2.18 0.00 45.40 3.35
5698 6947 2.590092 GCCGGGTATTGTGGCTCT 59.410 61.111 2.18 0.00 45.40 4.09
5702 6951 0.107410 TGCTTAGCCGGGTATTGTGG 60.107 55.000 15.31 4.25 0.00 4.17
5703 6952 1.745232 TTGCTTAGCCGGGTATTGTG 58.255 50.000 15.31 6.66 0.00 3.33
5704 6953 2.500392 TTTGCTTAGCCGGGTATTGT 57.500 45.000 15.31 0.00 0.00 2.71
5705 6954 3.214328 AGATTTGCTTAGCCGGGTATTG 58.786 45.455 15.31 11.60 0.00 1.90
5706 6955 3.577805 AGATTTGCTTAGCCGGGTATT 57.422 42.857 15.31 0.00 0.00 1.89
5707 6956 3.646637 ACTAGATTTGCTTAGCCGGGTAT 59.353 43.478 15.31 0.00 0.00 2.73
5708 6957 3.036091 ACTAGATTTGCTTAGCCGGGTA 58.964 45.455 9.87 9.87 0.00 3.69
5709 6958 1.838077 ACTAGATTTGCTTAGCCGGGT 59.162 47.619 12.58 12.58 0.00 5.28
5710 6959 2.484889 GACTAGATTTGCTTAGCCGGG 58.515 52.381 2.18 0.00 0.00 5.73
5711 6960 2.484889 GGACTAGATTTGCTTAGCCGG 58.515 52.381 0.29 0.00 0.00 6.13
5712 6961 2.158957 TGGGACTAGATTTGCTTAGCCG 60.159 50.000 0.29 0.00 0.00 5.52
5713 6962 3.560636 TGGGACTAGATTTGCTTAGCC 57.439 47.619 0.29 0.00 0.00 3.93
5714 6963 7.547370 CAGTATATGGGACTAGATTTGCTTAGC 59.453 40.741 0.00 0.00 0.00 3.09
5715 6964 8.589338 ACAGTATATGGGACTAGATTTGCTTAG 58.411 37.037 0.00 0.00 0.00 2.18
5716 6965 8.492415 ACAGTATATGGGACTAGATTTGCTTA 57.508 34.615 0.00 0.00 0.00 3.09
5717 6966 7.071196 TGACAGTATATGGGACTAGATTTGCTT 59.929 37.037 0.00 0.00 0.00 3.91
5718 6967 6.554982 TGACAGTATATGGGACTAGATTTGCT 59.445 38.462 0.00 0.00 0.00 3.91
5719 6968 6.647067 GTGACAGTATATGGGACTAGATTTGC 59.353 42.308 0.00 0.00 0.00 3.68
5720 6969 7.957002 AGTGACAGTATATGGGACTAGATTTG 58.043 38.462 0.00 0.00 0.00 2.32
5721 6970 9.080097 GTAGTGACAGTATATGGGACTAGATTT 57.920 37.037 0.00 0.00 31.14 2.17
5722 6971 7.670559 GGTAGTGACAGTATATGGGACTAGATT 59.329 40.741 0.00 0.00 31.14 2.40
5723 6972 7.018751 AGGTAGTGACAGTATATGGGACTAGAT 59.981 40.741 0.00 0.00 31.14 1.98
5724 6973 6.332103 AGGTAGTGACAGTATATGGGACTAGA 59.668 42.308 0.00 0.00 31.14 2.43
5725 6974 6.431543 CAGGTAGTGACAGTATATGGGACTAG 59.568 46.154 0.00 0.00 31.14 2.57
5726 6975 6.304624 CAGGTAGTGACAGTATATGGGACTA 58.695 44.000 0.00 0.00 0.00 2.59
5727 6976 5.141182 CAGGTAGTGACAGTATATGGGACT 58.859 45.833 0.00 0.00 0.00 3.85
5728 6977 4.262079 GCAGGTAGTGACAGTATATGGGAC 60.262 50.000 0.00 0.00 0.00 4.46
5729 6978 3.895656 GCAGGTAGTGACAGTATATGGGA 59.104 47.826 0.00 0.00 0.00 4.37
5730 6979 3.641436 TGCAGGTAGTGACAGTATATGGG 59.359 47.826 0.00 0.00 0.00 4.00
5731 6980 4.937201 TGCAGGTAGTGACAGTATATGG 57.063 45.455 0.00 0.00 0.00 2.74
5732 6981 5.907207 AGTTGCAGGTAGTGACAGTATATG 58.093 41.667 0.00 0.00 0.00 1.78
5733 6982 5.656859 TGAGTTGCAGGTAGTGACAGTATAT 59.343 40.000 0.00 0.00 0.00 0.86
5734 6983 5.014202 TGAGTTGCAGGTAGTGACAGTATA 58.986 41.667 0.00 0.00 0.00 1.47
5735 6984 3.832490 TGAGTTGCAGGTAGTGACAGTAT 59.168 43.478 0.00 0.00 0.00 2.12
5750 7001 6.508563 GCTTTTGCTCTTTTAGTTTGAGTTGC 60.509 38.462 0.00 0.00 43.35 4.17
5845 7097 6.435428 TCAAAAAGGAGAACGCAAAATAGAC 58.565 36.000 0.00 0.00 0.00 2.59
5882 7134 3.282021 AGCTGAACTTTGAAGTCTTGCA 58.718 40.909 13.34 0.00 38.57 4.08
5936 7188 7.736893 ACTATGTGGAGTTTCTAGAAAACTGT 58.263 34.615 19.30 10.98 40.27 3.55


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.