Multiple sequence alignment - TraesCS2A01G199400

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS2A01G199400 chr2A 100.000 7205 0 0 1 7205 171957706 171950502 0.000000e+00 13306.0
1 TraesCS2A01G199400 chr2A 96.512 86 3 0 5087 5172 171952536 171952451 7.530000e-30 143.0
2 TraesCS2A01G199400 chr2A 96.512 86 3 0 5171 5256 171952620 171952535 7.530000e-30 143.0
3 TraesCS2A01G199400 chr2D 96.718 4327 115 6 1972 6277 160605854 160601534 0.000000e+00 7179.0
4 TraesCS2A01G199400 chr2D 91.598 1833 84 29 106 1897 160607658 160605855 0.000000e+00 2468.0
5 TraesCS2A01G199400 chr2D 90.216 603 22 17 6618 7205 160600865 160600285 0.000000e+00 752.0
6 TraesCS2A01G199400 chr2D 96.078 102 4 0 6273 6374 160601252 160601151 4.470000e-37 167.0
7 TraesCS2A01G199400 chr2D 96.703 91 3 0 1 91 160607799 160607709 1.250000e-32 152.0
8 TraesCS2A01G199400 chr2D 97.674 86 2 0 5087 5172 160602640 160602555 1.620000e-31 148.0
9 TraesCS2A01G199400 chr2D 95.349 86 4 0 5171 5256 160602724 160602639 3.510000e-28 137.0
10 TraesCS2A01G199400 chr2B 94.670 4578 169 22 1973 6502 217408796 217404246 0.000000e+00 7033.0
11 TraesCS2A01G199400 chr2B 89.994 1589 83 32 273 1813 217410390 217408830 0.000000e+00 1984.0
12 TraesCS2A01G199400 chr2B 88.469 503 42 10 6710 7205 217399460 217398967 1.730000e-165 593.0
13 TraesCS2A01G199400 chr2B 96.512 86 3 0 5171 5256 217405683 217405598 7.530000e-30 143.0
14 TraesCS2A01G199400 chr2B 93.023 86 6 0 5087 5172 217405599 217405514 7.590000e-25 126.0
15 TraesCS2A01G199400 chr2B 91.304 46 4 0 6378 6423 405332310 405332265 6.030000e-06 63.9
16 TraesCS2A01G199400 chr7D 88.779 303 31 2 1350 1651 140757718 140758018 1.140000e-97 368.0
17 TraesCS2A01G199400 chr7D 91.667 48 4 0 707 754 556434512 556434465 4.660000e-07 67.6
18 TraesCS2A01G199400 chrUn 87.789 303 33 4 1350 1651 64366350 64366649 1.150000e-92 351.0
19 TraesCS2A01G199400 chr1A 89.571 163 16 1 1353 1514 11790917 11790755 9.470000e-49 206.0
20 TraesCS2A01G199400 chr1A 96.250 80 3 0 1894 1973 160152696 160152617 1.630000e-26 132.0
21 TraesCS2A01G199400 chr1A 91.358 81 7 0 1893 1973 251695788 251695708 2.120000e-20 111.0
22 TraesCS2A01G199400 chr3B 91.034 145 13 0 1505 1649 805667412 805667268 5.700000e-46 196.0
23 TraesCS2A01G199400 chr3B 93.220 118 7 1 1353 1469 805667535 805667418 9.610000e-39 172.0
24 TraesCS2A01G199400 chr5A 80.000 230 31 10 1670 1895 610463201 610462983 9.680000e-34 156.0
25 TraesCS2A01G199400 chr5A 97.500 80 2 0 1894 1973 451589963 451589884 3.510000e-28 137.0
26 TraesCS2A01G199400 chr5A 93.750 80 5 0 1894 1973 305883896 305883817 3.530000e-23 121.0
27 TraesCS2A01G199400 chr5D 79.130 230 32 13 1670 1895 489311239 489311022 2.090000e-30 145.0
28 TraesCS2A01G199400 chr5D 91.837 98 8 0 1551 1648 483284819 483284916 3.510000e-28 137.0
29 TraesCS2A01G199400 chr5B 78.696 230 33 9 1670 1895 603456329 603456112 9.750000e-29 139.0
30 TraesCS2A01G199400 chr5B 86.275 51 7 0 6375 6425 712962788 712962838 1.000000e-03 56.5
31 TraesCS2A01G199400 chr6A 96.154 78 3 0 1896 1973 562943455 562943378 2.110000e-25 128.0
32 TraesCS2A01G199400 chr6A 92.593 81 6 0 1893 1973 607845515 607845435 4.570000e-22 117.0
33 TraesCS2A01G199400 chr4A 95.062 81 4 0 1893 1973 318044418 318044498 2.110000e-25 128.0
34 TraesCS2A01G199400 chr4A 91.111 45 4 0 6381 6425 32052728 32052772 2.170000e-05 62.1
35 TraesCS2A01G199400 chr7A 92.500 80 4 1 1896 1973 681522553 681522632 5.910000e-21 113.0
36 TraesCS2A01G199400 chr7A 91.358 81 7 0 1893 1973 5358618 5358698 2.120000e-20 111.0
37 TraesCS2A01G199400 chr1B 93.750 48 3 0 1673 1720 410814069 410814022 1.000000e-08 73.1
38 TraesCS2A01G199400 chr6B 100.000 29 0 0 6393 6421 713458318 713458290 4.000000e-03 54.7


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS2A01G199400 chr2A 171950502 171957706 7204 True 13306.000000 13306 100.000000 1 7205 1 chr2A.!!$R1 7204
1 TraesCS2A01G199400 chr2D 160600285 160607799 7514 True 1571.857143 7179 94.905143 1 7205 7 chr2D.!!$R1 7204
2 TraesCS2A01G199400 chr2B 217404246 217410390 6144 True 2321.500000 7033 93.549750 273 6502 4 chr2B.!!$R3 6229

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
159 196 0.096454 GTTCCTGCGCATTCCGTAAC 59.904 55.000 12.24 5.76 39.71 2.50 F
701 765 0.108567 GCTTCCTTCTCTCCGTCACC 60.109 60.000 0.00 0.00 0.00 4.02 F
1321 1407 0.692419 AGGATCCAACTCCCTGCGAT 60.692 55.000 15.82 0.00 35.79 4.58 F
1550 1637 1.039856 AAACTGGCCATCGCTGTTTT 58.960 45.000 5.51 0.00 37.91 2.43 F
2422 2542 1.003580 TGGCAGTCTCCATCTTGTTCC 59.996 52.381 0.00 0.00 0.00 3.62 F
3457 3577 2.243221 AGCCTCTTCCATTGCCTGTAAT 59.757 45.455 0.00 0.00 0.00 1.89 F
4023 4146 0.331278 TCATGGTGGGCCTTTACCTG 59.669 55.000 20.03 15.99 37.84 4.00 F
5406 5535 0.174845 TAGTTCAGGGAATGTCGCGG 59.825 55.000 6.13 0.00 34.19 6.46 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1973 2081 0.109781 CCGCGCATTGCTACAAAAGT 60.110 50.000 8.75 0.00 43.27 2.66 R
1974 2082 0.798009 CCCGCGCATTGCTACAAAAG 60.798 55.000 8.75 0.00 43.27 2.27 R
2368 2488 0.865769 GAAAGGCACTGTGGTGTACG 59.134 55.000 10.21 0.00 44.65 3.67 R
2955 3075 2.158475 AGTGAGCCTGGAATGGACAAAA 60.158 45.455 0.00 0.00 0.00 2.44 R
3677 3797 0.882042 CAAACTGCTGCTCCAGTCGT 60.882 55.000 9.68 0.58 44.86 4.34 R
5387 5516 0.174845 CCGCGACATTCCCTGAACTA 59.825 55.000 8.23 0.00 0.00 2.24 R
5718 5847 0.171231 CAAGCATCGACCTCTGACGA 59.829 55.000 0.00 0.00 42.43 4.20 R
6702 7272 0.316204 AACAAGCAAGCTCACATGCC 59.684 50.000 4.49 0.00 41.42 4.40 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
30 31 1.741770 GTCGTGGCCTAGCAACTGG 60.742 63.158 3.32 0.00 28.79 4.00
38 39 2.162681 GCCTAGCAACTGGTGAATTGT 58.837 47.619 0.00 0.00 0.00 2.71
73 74 5.423886 GGGCTTGGTATATCTAGAAGCATC 58.576 45.833 11.39 1.49 40.68 3.91
97 105 3.841643 TCTACGCTGTAAAGTAAGTGCC 58.158 45.455 0.00 0.00 0.00 5.01
101 109 2.157668 CGCTGTAAAGTAAGTGCCACTG 59.842 50.000 0.00 0.00 0.00 3.66
104 141 4.151867 GCTGTAAAGTAAGTGCCACTGTAC 59.848 45.833 0.00 3.78 37.28 2.90
119 156 4.155462 CCACTGTACTACTGCTACGAAAGA 59.845 45.833 0.00 0.00 0.00 2.52
140 177 8.652810 AAAGAAACAAATGAGGAAATGAACAG 57.347 30.769 0.00 0.00 0.00 3.16
143 180 7.922811 AGAAACAAATGAGGAAATGAACAGTTC 59.077 33.333 6.32 6.32 34.94 3.01
154 191 0.169009 GAACAGTTCCTGCGCATTCC 59.831 55.000 12.24 0.00 34.37 3.01
159 196 0.096454 GTTCCTGCGCATTCCGTAAC 59.904 55.000 12.24 5.76 39.71 2.50
160 197 1.022451 TTCCTGCGCATTCCGTAACC 61.022 55.000 12.24 0.00 39.71 2.85
164 201 0.952280 TGCGCATTCCGTAACCAAAA 59.048 45.000 5.66 0.00 39.71 2.44
167 204 2.859032 GCGCATTCCGTAACCAAAAACA 60.859 45.455 0.30 0.00 39.71 2.83
168 205 2.977169 CGCATTCCGTAACCAAAAACAG 59.023 45.455 0.00 0.00 0.00 3.16
169 206 3.549221 CGCATTCCGTAACCAAAAACAGT 60.549 43.478 0.00 0.00 0.00 3.55
170 207 4.319622 CGCATTCCGTAACCAAAAACAGTA 60.320 41.667 0.00 0.00 0.00 2.74
173 210 7.306953 GCATTCCGTAACCAAAAACAGTAATA 58.693 34.615 0.00 0.00 0.00 0.98
177 214 6.145371 TCCGTAACCAAAAACAGTAATACGTC 59.855 38.462 0.00 0.00 34.65 4.34
178 215 6.146021 CCGTAACCAAAAACAGTAATACGTCT 59.854 38.462 0.00 0.00 34.65 4.18
179 216 7.328249 CCGTAACCAAAAACAGTAATACGTCTA 59.672 37.037 0.00 0.00 34.65 2.59
181 218 9.196552 GTAACCAAAAACAGTAATACGTCTACT 57.803 33.333 0.00 0.00 0.00 2.57
183 220 9.933723 AACCAAAAACAGTAATACGTCTACTAT 57.066 29.630 9.29 0.00 0.00 2.12
187 224 9.846248 AAAAACAGTAATACGTCTACTATTCGT 57.154 29.630 9.29 0.00 40.78 3.85
190 227 8.304202 ACAGTAATACGTCTACTATTCGTAGG 57.696 38.462 9.29 0.12 44.66 3.18
191 228 7.928706 ACAGTAATACGTCTACTATTCGTAGGT 59.071 37.037 9.29 0.61 44.66 3.08
192 229 9.411801 CAGTAATACGTCTACTATTCGTAGGTA 57.588 37.037 9.29 0.00 44.66 3.08
193 230 9.413048 AGTAATACGTCTACTATTCGTAGGTAC 57.587 37.037 8.16 0.00 44.66 3.34
215 252 6.597832 ACAGTACTTGAGAAATGACTAGCT 57.402 37.500 0.00 0.00 0.00 3.32
234 271 9.715121 GACTAGCTCTACTGTATACTGAAGTAT 57.285 37.037 15.84 8.02 43.15 2.12
236 273 7.209471 AGCTCTACTGTATACTGAAGTATGC 57.791 40.000 15.84 11.40 41.03 3.14
238 275 6.858993 GCTCTACTGTATACTGAAGTATGCAC 59.141 42.308 15.84 6.75 44.65 4.57
239 276 7.273320 TCTACTGTATACTGAAGTATGCACC 57.727 40.000 15.84 2.29 44.65 5.01
261 317 1.398390 CGAGGCTAACAAATGACCTGC 59.602 52.381 0.00 0.00 0.00 4.85
288 344 2.989840 CGAGCAGTTGTTTCAGAGTAGG 59.010 50.000 0.00 0.00 0.00 3.18
289 345 3.553096 CGAGCAGTTGTTTCAGAGTAGGT 60.553 47.826 0.00 0.00 0.00 3.08
290 346 4.381411 GAGCAGTTGTTTCAGAGTAGGTT 58.619 43.478 0.00 0.00 0.00 3.50
291 347 5.539048 GAGCAGTTGTTTCAGAGTAGGTTA 58.461 41.667 0.00 0.00 0.00 2.85
306 362 7.383572 CAGAGTAGGTTATTGAAGATTGATCCG 59.616 40.741 0.00 0.00 0.00 4.18
336 392 0.618981 GTAGGTTAGGCAGCCCAACT 59.381 55.000 20.55 12.72 0.00 3.16
337 393 1.835531 GTAGGTTAGGCAGCCCAACTA 59.164 52.381 20.55 11.72 0.00 2.24
338 394 1.368374 AGGTTAGGCAGCCCAACTAA 58.632 50.000 20.55 4.83 0.00 2.24
352 408 7.254084 GCAGCCCAACTAATAAATTTTCATTCG 60.254 37.037 0.00 0.00 0.00 3.34
379 435 2.389143 GCGAACGGCGAACTTACG 59.611 61.111 16.62 10.48 44.57 3.18
402 459 5.562696 CGTGAATCAATTATTATTGGCCGCT 60.563 40.000 0.00 0.00 41.23 5.52
436 493 4.789119 CGAACTCTAGACGACTGATTGAAC 59.211 45.833 0.00 0.00 0.00 3.18
504 561 2.154798 CTTGGCACGAGGAGAACGGA 62.155 60.000 0.00 0.00 34.93 4.69
510 567 1.677966 CGAGGAGAACGGAGTGGGA 60.678 63.158 0.00 0.00 45.00 4.37
684 748 0.374758 CGCGTTGCAACATATCTGCT 59.625 50.000 28.01 0.00 40.59 4.24
701 765 0.108567 GCTTCCTTCTCTCCGTCACC 60.109 60.000 0.00 0.00 0.00 4.02
788 852 3.104602 CTGCATCCTCTTTGCCGCG 62.105 63.158 0.00 0.00 39.39 6.46
959 1026 2.618045 CGGCCAACCCAAATCTTCTACT 60.618 50.000 2.24 0.00 0.00 2.57
960 1027 2.755103 GGCCAACCCAAATCTTCTACTG 59.245 50.000 0.00 0.00 0.00 2.74
1091 1165 3.148031 GATACCCACCGTCTCCGCC 62.148 68.421 0.00 0.00 0.00 6.13
1146 1232 2.134287 CACCTGGATCGGGATCGGT 61.134 63.158 0.00 3.08 38.69 4.69
1156 1242 3.992317 GGATCGGTAGGCGAGCCC 61.992 72.222 10.95 0.00 36.08 5.19
1321 1407 0.692419 AGGATCCAACTCCCTGCGAT 60.692 55.000 15.82 0.00 35.79 4.58
1334 1420 1.135373 CCTGCGATGTTACGAGTGAGT 60.135 52.381 0.00 0.00 35.09 3.41
1335 1421 2.096980 CCTGCGATGTTACGAGTGAGTA 59.903 50.000 0.00 0.00 35.09 2.59
1368 1455 5.316987 TCTCTTGGATTTTCTGGAAAGGTC 58.683 41.667 0.00 0.55 0.00 3.85
1470 1557 2.690778 GCGCTGTCGGGAATTGCTT 61.691 57.895 0.00 0.00 35.95 3.91
1477 1564 1.154035 CGGGAATTGCTTTGTCGCC 60.154 57.895 0.00 0.00 0.00 5.54
1486 1573 1.956620 GCTTTGTCGCCGTAGTCAGC 61.957 60.000 0.00 0.00 0.00 4.26
1516 1603 3.135895 TGGATAAACCCTAGTTGGCTAGC 59.864 47.826 6.04 6.04 42.51 3.42
1550 1637 1.039856 AAACTGGCCATCGCTGTTTT 58.960 45.000 5.51 0.00 37.91 2.43
1603 1690 8.371571 TGGACTACAATATCATCATAGATGCT 57.628 34.615 2.19 0.00 0.00 3.79
1658 1745 6.247229 TGGATACCACAAACTGCAGTATAT 57.753 37.500 22.01 10.94 0.00 0.86
1662 1749 8.148351 GGATACCACAAACTGCAGTATATCTTA 58.852 37.037 22.01 8.56 0.00 2.10
1663 1750 9.542462 GATACCACAAACTGCAGTATATCTTAA 57.458 33.333 22.01 3.22 0.00 1.85
1690 1790 7.987458 ACTGTTATAATATCTGAGTTGGTGGTG 59.013 37.037 0.00 0.00 0.00 4.17
1712 1812 3.539604 GTCCATTCACCCTCTGAGATTG 58.460 50.000 6.17 2.79 0.00 2.67
1779 1887 9.755804 CTTTCTATTTAGCAGACAGATGTATCA 57.244 33.333 0.00 0.00 0.00 2.15
1897 2005 7.857885 GTCTAACCAGCTCATGCAATTAAATAC 59.142 37.037 0.00 0.00 42.74 1.89
1898 2006 6.780457 AACCAGCTCATGCAATTAAATACT 57.220 33.333 0.00 0.00 42.74 2.12
1899 2007 6.382869 ACCAGCTCATGCAATTAAATACTC 57.617 37.500 0.00 0.00 42.74 2.59
1901 2009 5.278660 CCAGCTCATGCAATTAAATACTCCC 60.279 44.000 0.00 0.00 42.74 4.30
1904 2012 5.048434 GCTCATGCAATTAAATACTCCCTCC 60.048 44.000 0.00 0.00 39.41 4.30
1905 2013 5.063204 TCATGCAATTAAATACTCCCTCCG 58.937 41.667 0.00 0.00 0.00 4.63
1906 2014 4.497291 TGCAATTAAATACTCCCTCCGT 57.503 40.909 0.00 0.00 0.00 4.69
1907 2015 4.448210 TGCAATTAAATACTCCCTCCGTC 58.552 43.478 0.00 0.00 0.00 4.79
1908 2016 3.813724 GCAATTAAATACTCCCTCCGTCC 59.186 47.826 0.00 0.00 0.00 4.79
1909 2017 4.386711 CAATTAAATACTCCCTCCGTCCC 58.613 47.826 0.00 0.00 0.00 4.46
1910 2018 2.852714 TAAATACTCCCTCCGTCCCA 57.147 50.000 0.00 0.00 0.00 4.37
1911 2019 2.191981 AAATACTCCCTCCGTCCCAT 57.808 50.000 0.00 0.00 0.00 4.00
1912 2020 3.339713 AAATACTCCCTCCGTCCCATA 57.660 47.619 0.00 0.00 0.00 2.74
1913 2021 3.339713 AATACTCCCTCCGTCCCATAA 57.660 47.619 0.00 0.00 0.00 1.90
1914 2022 3.562108 ATACTCCCTCCGTCCCATAAT 57.438 47.619 0.00 0.00 0.00 1.28
1915 2023 4.687262 ATACTCCCTCCGTCCCATAATA 57.313 45.455 0.00 0.00 0.00 0.98
1916 2024 3.562108 ACTCCCTCCGTCCCATAATAT 57.438 47.619 0.00 0.00 0.00 1.28
1917 2025 4.687262 ACTCCCTCCGTCCCATAATATA 57.313 45.455 0.00 0.00 0.00 0.86
1918 2026 5.019657 ACTCCCTCCGTCCCATAATATAA 57.980 43.478 0.00 0.00 0.00 0.98
1919 2027 5.024118 ACTCCCTCCGTCCCATAATATAAG 58.976 45.833 0.00 0.00 0.00 1.73
1920 2028 5.222484 ACTCCCTCCGTCCCATAATATAAGA 60.222 44.000 0.00 0.00 0.00 2.10
1921 2029 5.021458 TCCCTCCGTCCCATAATATAAGAC 58.979 45.833 0.00 0.00 0.00 3.01
1923 2031 4.461781 CCTCCGTCCCATAATATAAGACGT 59.538 45.833 17.31 0.00 46.62 4.34
1924 2032 5.047519 CCTCCGTCCCATAATATAAGACGTT 60.048 44.000 17.31 0.00 46.62 3.99
1925 2033 6.409524 TCCGTCCCATAATATAAGACGTTT 57.590 37.500 17.31 0.00 46.62 3.60
1926 2034 6.819284 TCCGTCCCATAATATAAGACGTTTT 58.181 36.000 17.31 0.00 46.62 2.43
1927 2035 7.274447 TCCGTCCCATAATATAAGACGTTTTT 58.726 34.615 17.31 0.00 46.62 1.94
1928 2036 8.420222 TCCGTCCCATAATATAAGACGTTTTTA 58.580 33.333 17.31 0.00 46.62 1.52
1929 2037 8.490355 CCGTCCCATAATATAAGACGTTTTTAC 58.510 37.037 17.31 0.00 46.62 2.01
1930 2038 9.033481 CGTCCCATAATATAAGACGTTTTTACA 57.967 33.333 13.04 0.00 43.89 2.41
1933 2041 9.659830 CCCATAATATAAGACGTTTTTACAAGC 57.340 33.333 0.00 0.00 0.00 4.01
1941 2049 7.924103 AAGACGTTTTTACAAGCTAAAATGG 57.076 32.000 13.54 4.96 35.55 3.16
1942 2050 5.918576 AGACGTTTTTACAAGCTAAAATGGC 59.081 36.000 13.54 11.31 38.14 4.40
1943 2051 5.838529 ACGTTTTTACAAGCTAAAATGGCT 58.161 33.333 13.54 0.00 42.31 4.75
1944 2052 7.683463 AGACGTTTTTACAAGCTAAAATGGCTT 60.683 33.333 12.38 0.00 42.90 4.35
1952 2060 5.422666 AAGCTAAAATGGCTTGCAAAAAC 57.577 34.783 0.00 0.00 46.53 2.43
1953 2061 4.450053 AGCTAAAATGGCTTGCAAAAACA 58.550 34.783 0.00 0.00 36.56 2.83
1954 2062 5.065235 AGCTAAAATGGCTTGCAAAAACAT 58.935 33.333 0.00 2.44 36.56 2.71
1955 2063 5.179929 AGCTAAAATGGCTTGCAAAAACATC 59.820 36.000 0.00 0.00 36.56 3.06
1956 2064 5.179929 GCTAAAATGGCTTGCAAAAACATCT 59.820 36.000 0.00 0.15 0.00 2.90
1957 2065 6.293571 GCTAAAATGGCTTGCAAAAACATCTT 60.294 34.615 0.00 1.40 0.00 2.40
1958 2066 7.095271 GCTAAAATGGCTTGCAAAAACATCTTA 60.095 33.333 0.00 2.49 0.00 2.10
1959 2067 6.544038 AAATGGCTTGCAAAAACATCTTAC 57.456 33.333 0.00 0.00 0.00 2.34
1960 2068 4.662468 TGGCTTGCAAAAACATCTTACA 57.338 36.364 0.00 0.00 0.00 2.41
1961 2069 5.212532 TGGCTTGCAAAAACATCTTACAT 57.787 34.783 0.00 0.00 0.00 2.29
1962 2070 5.609423 TGGCTTGCAAAAACATCTTACATT 58.391 33.333 0.00 0.00 0.00 2.71
1963 2071 5.466058 TGGCTTGCAAAAACATCTTACATTG 59.534 36.000 0.00 0.00 0.00 2.82
1964 2072 5.466393 GGCTTGCAAAAACATCTTACATTGT 59.534 36.000 0.00 0.00 0.00 2.71
1965 2073 6.357198 GCTTGCAAAAACATCTTACATTGTG 58.643 36.000 0.00 0.00 0.00 3.33
1966 2074 6.564499 GCTTGCAAAAACATCTTACATTGTGG 60.564 38.462 0.00 0.00 0.00 4.17
1967 2075 5.295950 TGCAAAAACATCTTACATTGTGGG 58.704 37.500 0.00 0.00 0.00 4.61
1968 2076 5.069648 TGCAAAAACATCTTACATTGTGGGA 59.930 36.000 0.00 0.00 0.00 4.37
1969 2077 5.405269 GCAAAAACATCTTACATTGTGGGAC 59.595 40.000 0.00 0.00 0.00 4.46
1970 2078 5.371115 AAAACATCTTACATTGTGGGACG 57.629 39.130 0.00 0.00 0.00 4.79
1971 2079 2.985896 ACATCTTACATTGTGGGACGG 58.014 47.619 0.00 0.00 0.00 4.79
1972 2080 2.569853 ACATCTTACATTGTGGGACGGA 59.430 45.455 0.00 0.00 0.00 4.69
1973 2081 3.008594 ACATCTTACATTGTGGGACGGAA 59.991 43.478 0.00 0.00 0.00 4.30
1974 2082 3.048337 TCTTACATTGTGGGACGGAAC 57.952 47.619 0.00 0.00 0.00 3.62
1975 2083 2.635915 TCTTACATTGTGGGACGGAACT 59.364 45.455 0.00 0.00 0.00 3.01
1976 2084 3.071892 TCTTACATTGTGGGACGGAACTT 59.928 43.478 0.00 0.00 0.00 2.66
1977 2085 2.358322 ACATTGTGGGACGGAACTTT 57.642 45.000 0.00 0.00 0.00 2.66
1978 2086 2.661718 ACATTGTGGGACGGAACTTTT 58.338 42.857 0.00 0.00 0.00 2.27
1979 2087 2.360801 ACATTGTGGGACGGAACTTTTG 59.639 45.455 0.00 0.00 0.00 2.44
1989 2097 2.241722 CGGAACTTTTGTAGCAATGCG 58.758 47.619 0.00 0.00 0.00 4.73
2017 2125 5.519722 CATTTAATCTCCATAACAACGCCC 58.480 41.667 0.00 0.00 0.00 6.13
2368 2488 1.140452 TCAGGCTCCATCTCATTCTGC 59.860 52.381 0.00 0.00 0.00 4.26
2422 2542 1.003580 TGGCAGTCTCCATCTTGTTCC 59.996 52.381 0.00 0.00 0.00 3.62
2449 2569 9.712305 AGAAATACTATGCGATATTTTACTGCT 57.288 29.630 0.00 0.00 32.42 4.24
2690 2810 4.507710 GTGAAGAATGTGTATCTCAGGCA 58.492 43.478 0.00 0.00 0.00 4.75
3457 3577 2.243221 AGCCTCTTCCATTGCCTGTAAT 59.757 45.455 0.00 0.00 0.00 1.89
3483 3603 6.551736 ACAACAGAAAATGTACAAGTGACAC 58.448 36.000 0.00 0.00 43.00 3.67
3962 4085 1.382629 GCCAAGGGTCCTTAAGGCA 59.617 57.895 17.32 3.10 41.76 4.75
4023 4146 0.331278 TCATGGTGGGCCTTTACCTG 59.669 55.000 20.03 15.99 37.84 4.00
4382 4505 6.166279 TCTTCATGACACATCCACTAAAGAC 58.834 40.000 0.00 0.00 0.00 3.01
4479 4602 5.525378 CCACTCATTTCTGTATCTAAGGCAC 59.475 44.000 0.00 0.00 0.00 5.01
4619 4742 6.595682 AGATGATTACACTCAGGTAAATGGG 58.404 40.000 0.00 0.00 36.86 4.00
4641 4764 3.864921 GCAGAACAATGGTCCTAGTTCGT 60.865 47.826 0.00 3.61 43.71 3.85
4666 4789 0.877071 ATTCCGCTTGTCACAAGCAG 59.123 50.000 35.64 27.59 43.15 4.24
4704 4827 2.072298 CTTCTCAGCTTGCTACACACC 58.928 52.381 0.00 0.00 0.00 4.16
5274 5403 3.889538 CGGGATGGACTCTGTATTCTGTA 59.110 47.826 0.00 0.00 0.00 2.74
5283 5412 3.525537 TCTGTATTCTGTAGCAGCTTGC 58.474 45.455 0.00 0.00 45.46 4.01
5297 5426 1.002868 CTTGCACTCAGGTCCCAGG 60.003 63.158 0.00 0.00 0.00 4.45
5305 5434 1.201429 TCAGGTCCCAGGGAAAGCTC 61.201 60.000 10.89 0.00 31.38 4.09
5350 5479 7.179338 ACACTCCTTGTCAGATTTGAGTAGTAT 59.821 37.037 0.00 0.00 29.79 2.12
5401 5530 5.026790 AGAAGCTACTAGTTCAGGGAATGT 58.973 41.667 0.00 0.00 0.00 2.71
5406 5535 0.174845 TAGTTCAGGGAATGTCGCGG 59.825 55.000 6.13 0.00 34.19 6.46
5462 5591 2.111384 GGAGCTGGTCCTGATGTAAGA 58.889 52.381 18.30 0.00 42.99 2.10
5498 5627 4.721274 TCACAGGAGAATGACATATTGGGA 59.279 41.667 0.00 0.00 0.00 4.37
5521 5650 4.386867 TGGCTTTCGTATCGAAGAGAAT 57.613 40.909 4.86 0.00 46.43 2.40
5543 5672 1.981495 AGTACAAGCAGCCCTTCTCTT 59.019 47.619 0.00 0.00 0.00 2.85
5601 5730 2.490903 CAAATTTCTGCTGTGGAGGAGG 59.509 50.000 0.00 0.00 38.20 4.30
5605 5734 3.324930 TGCTGTGGAGGAGGCTGG 61.325 66.667 0.00 0.00 0.00 4.85
5718 5847 1.817941 GTGGTTGATGCGCCGGTAT 60.818 57.895 4.18 0.00 0.00 2.73
5730 5859 1.647629 CCGGTATCGTCAGAGGTCG 59.352 63.158 0.00 0.00 33.95 4.79
5957 6086 1.414550 GGAGAACATCCTGGTAGCCTC 59.585 57.143 0.00 0.00 45.64 4.70
5992 6121 4.871513 TGCGTAATGGCTCTACTTATCAG 58.128 43.478 0.00 0.00 0.00 2.90
6029 6158 4.968259 TCCTCAGCTGCACTTTTTAGTTA 58.032 39.130 9.47 0.00 0.00 2.24
6091 6220 3.818787 CTTCCACGGCCATGCAGC 61.819 66.667 2.24 0.00 0.00 5.25
6101 6230 1.205417 GGCCATGCAGCTTTTGTGTAT 59.795 47.619 0.00 0.00 0.00 2.29
6200 6332 7.221259 AGCGTGACCAAAATAACAAAGTTTAAC 59.779 33.333 0.00 0.00 0.00 2.01
6261 6397 7.168135 CCAAAACTGCAAAGAGTAAACTTCATC 59.832 37.037 0.00 0.00 0.00 2.92
6278 6700 4.718940 TCATCATACGAGCACTCTGAAA 57.281 40.909 0.00 0.00 0.00 2.69
6310 6732 5.105595 TCAGACATGAAGATCACGTCATCTT 60.106 40.000 15.03 15.03 41.55 2.40
6390 6960 8.409358 AGTGCTTACTTGTTTATCCATTTCTT 57.591 30.769 0.00 0.00 0.00 2.52
6419 6989 5.209659 AGTATTTTCAGACGGAGGGAGTAT 58.790 41.667 0.00 0.00 0.00 2.12
6420 6990 3.887621 TTTTCAGACGGAGGGAGTATG 57.112 47.619 0.00 0.00 32.63 2.39
6458 7028 8.797438 TGTACTGTGATTATCTGATACTCATCC 58.203 37.037 17.33 8.91 29.01 3.51
6460 7030 6.491745 ACTGTGATTATCTGATACTCATCCGT 59.508 38.462 17.33 12.68 29.01 4.69
6476 7046 7.773149 ACTCATCCGTACCATAATATAAGAGC 58.227 38.462 0.00 0.00 0.00 4.09
6482 7052 5.507180 CGTACCATAATATAAGAGCGTGTCG 59.493 44.000 0.00 0.00 0.00 4.35
6488 7058 5.713822 AATATAAGAGCGTGTCGAAAACC 57.286 39.130 0.00 0.00 0.00 3.27
6491 7061 0.106149 AGAGCGTGTCGAAAACCCTT 59.894 50.000 0.00 0.00 0.00 3.95
6497 7067 4.756135 AGCGTGTCGAAAACCCTTTTATAA 59.244 37.500 0.00 0.00 31.94 0.98
6502 7072 5.048573 TGTCGAAAACCCTTTTATAAGCCAC 60.049 40.000 0.00 0.00 31.94 5.01
6503 7073 4.154556 TCGAAAACCCTTTTATAAGCCACG 59.845 41.667 0.00 0.00 31.94 4.94
6504 7074 4.154556 CGAAAACCCTTTTATAAGCCACGA 59.845 41.667 0.00 0.00 31.94 4.35
6505 7075 5.163693 CGAAAACCCTTTTATAAGCCACGAT 60.164 40.000 0.00 0.00 31.94 3.73
6506 7076 6.037391 CGAAAACCCTTTTATAAGCCACGATA 59.963 38.462 0.00 0.00 31.94 2.92
6507 7077 6.937436 AAACCCTTTTATAAGCCACGATAG 57.063 37.500 0.00 0.00 46.19 2.08
6508 7078 4.386711 ACCCTTTTATAAGCCACGATAGC 58.613 43.478 0.00 0.00 42.67 2.97
6509 7079 4.102681 ACCCTTTTATAAGCCACGATAGCT 59.897 41.667 0.00 0.00 44.19 3.32
6535 7105 7.561021 TTTTATTTCCTTTGGGTCAAAAAGC 57.439 32.000 0.00 0.00 32.75 3.51
6540 7110 2.093235 CCTTTGGGTCAAAAAGCAACCA 60.093 45.455 0.00 0.00 32.75 3.67
6546 7116 3.381045 GGTCAAAAAGCAACCAGTAAGC 58.619 45.455 0.00 0.00 33.11 3.09
6547 7117 3.381045 GTCAAAAAGCAACCAGTAAGCC 58.619 45.455 0.00 0.00 0.00 4.35
6548 7118 3.068165 GTCAAAAAGCAACCAGTAAGCCT 59.932 43.478 0.00 0.00 0.00 4.58
6552 7122 6.041523 TCAAAAAGCAACCAGTAAGCCTATTT 59.958 34.615 0.00 0.00 0.00 1.40
6553 7123 5.644977 AAAGCAACCAGTAAGCCTATTTC 57.355 39.130 0.00 0.00 0.00 2.17
6557 7127 4.589908 CAACCAGTAAGCCTATTTCCACT 58.410 43.478 0.00 0.00 0.00 4.00
6559 7129 3.118738 ACCAGTAAGCCTATTTCCACTCG 60.119 47.826 0.00 0.00 0.00 4.18
6561 7131 3.132289 CAGTAAGCCTATTTCCACTCGGA 59.868 47.826 0.00 0.00 40.60 4.55
6574 7144 5.934935 TCCACTCGGAAGAAAATTAACAC 57.065 39.130 0.00 0.00 38.83 3.32
6575 7145 4.449743 TCCACTCGGAAGAAAATTAACACG 59.550 41.667 0.00 0.00 38.83 4.49
6576 7146 4.449743 CCACTCGGAAGAAAATTAACACGA 59.550 41.667 0.00 0.00 41.32 4.35
6577 7147 5.049954 CCACTCGGAAGAAAATTAACACGAA 60.050 40.000 0.00 0.00 41.32 3.85
6578 7148 6.071463 CACTCGGAAGAAAATTAACACGAAG 58.929 40.000 0.00 0.00 41.32 3.79
6580 7150 4.083696 TCGGAAGAAAATTAACACGAAGCC 60.084 41.667 0.00 0.00 37.03 4.35
6582 7152 4.482386 GAAGAAAATTAACACGAAGCCCC 58.518 43.478 0.00 0.00 0.00 5.80
6583 7153 2.486592 AGAAAATTAACACGAAGCCCCG 59.513 45.455 0.00 0.00 0.00 5.73
6584 7154 1.170442 AAATTAACACGAAGCCCCGG 58.830 50.000 0.00 0.00 0.00 5.73
6585 7155 1.310216 AATTAACACGAAGCCCCGGC 61.310 55.000 0.00 0.00 42.33 6.13
6592 7162 3.400054 GAAGCCCCGGCCAGTAGT 61.400 66.667 2.24 0.00 43.17 2.73
6593 7163 2.039951 AAGCCCCGGCCAGTAGTA 59.960 61.111 2.24 0.00 43.17 1.82
6594 7164 1.614226 AAGCCCCGGCCAGTAGTAA 60.614 57.895 2.24 0.00 43.17 2.24
6595 7165 0.986550 AAGCCCCGGCCAGTAGTAAT 60.987 55.000 2.24 0.00 43.17 1.89
6596 7166 0.986550 AGCCCCGGCCAGTAGTAATT 60.987 55.000 2.24 0.00 43.17 1.40
6597 7167 0.534427 GCCCCGGCCAGTAGTAATTC 60.534 60.000 2.24 0.00 34.56 2.17
6598 7168 0.834612 CCCCGGCCAGTAGTAATTCA 59.165 55.000 2.24 0.00 0.00 2.57
6599 7169 1.474498 CCCCGGCCAGTAGTAATTCAC 60.474 57.143 2.24 0.00 0.00 3.18
6600 7170 1.485066 CCCGGCCAGTAGTAATTCACT 59.515 52.381 2.24 0.00 41.62 3.41
6601 7171 2.696707 CCCGGCCAGTAGTAATTCACTA 59.303 50.000 2.24 0.00 38.80 2.74
6614 7184 7.726033 AGTAATTCACTACTGGATTCTCACT 57.274 36.000 0.00 0.00 34.98 3.41
6615 7185 8.824756 AGTAATTCACTACTGGATTCTCACTA 57.175 34.615 0.00 0.00 34.98 2.74
6616 7186 8.688151 AGTAATTCACTACTGGATTCTCACTAC 58.312 37.037 0.00 0.00 34.98 2.73
6617 7187 5.916661 TTCACTACTGGATTCTCACTACC 57.083 43.478 0.00 0.00 0.00 3.18
6618 7188 3.945921 TCACTACTGGATTCTCACTACCG 59.054 47.826 0.00 0.00 0.00 4.02
6619 7189 3.695060 CACTACTGGATTCTCACTACCGT 59.305 47.826 0.00 0.00 0.00 4.83
6660 7230 2.357637 CCAATTATTCGGAACACGCCAT 59.642 45.455 0.00 0.00 43.86 4.40
6661 7231 3.562141 CCAATTATTCGGAACACGCCATA 59.438 43.478 0.00 0.00 43.86 2.74
6664 7234 0.944386 ATTCGGAACACGCCATATGC 59.056 50.000 0.00 0.00 43.86 3.14
6687 7257 3.393800 ACGTGATCAAACAGGAGAACAG 58.606 45.455 0.00 0.00 0.00 3.16
6693 7263 1.876156 CAAACAGGAGAACAGGCTCAC 59.124 52.381 0.00 0.00 36.62 3.51
6694 7264 1.131638 AACAGGAGAACAGGCTCACA 58.868 50.000 0.00 0.00 36.62 3.58
6695 7265 1.356124 ACAGGAGAACAGGCTCACAT 58.644 50.000 0.00 0.00 36.62 3.21
6696 7266 1.701847 ACAGGAGAACAGGCTCACATT 59.298 47.619 0.00 0.00 36.62 2.71
6697 7267 2.082231 CAGGAGAACAGGCTCACATTG 58.918 52.381 0.00 0.00 36.62 2.82
6698 7268 1.701847 AGGAGAACAGGCTCACATTGT 59.298 47.619 0.00 0.00 36.62 2.71
6699 7269 1.808945 GGAGAACAGGCTCACATTGTG 59.191 52.381 10.64 10.64 36.62 3.33
6700 7270 2.498167 GAGAACAGGCTCACATTGTGT 58.502 47.619 16.06 0.00 34.79 3.72
6701 7271 3.557054 GGAGAACAGGCTCACATTGTGTA 60.557 47.826 16.06 3.21 36.62 2.90
6702 7272 3.668447 AGAACAGGCTCACATTGTGTAG 58.332 45.455 16.06 12.67 34.79 2.74
6703 7273 2.479566 ACAGGCTCACATTGTGTAGG 57.520 50.000 16.06 9.11 34.79 3.18
6733 7303 2.946346 GCTTGTTGCCCCCACCATG 61.946 63.158 0.00 0.00 35.15 3.66
6786 7356 1.227234 CATGCATGCACATGGGCTG 60.227 57.895 25.37 17.19 43.05 4.85
6793 7363 2.753043 CACATGGGCTGGTCCTGC 60.753 66.667 12.18 12.18 34.39 4.85
6820 7391 3.127533 GCTGCGCCCCACTACAAG 61.128 66.667 4.18 0.00 0.00 3.16
6827 7408 1.861982 GCCCCACTACAAGGTAGAGA 58.138 55.000 10.17 0.00 0.00 3.10
6835 7416 6.817140 CCCACTACAAGGTAGAGACATTTAAC 59.183 42.308 10.17 0.00 0.00 2.01
6837 7418 8.746530 CCACTACAAGGTAGAGACATTTAACTA 58.253 37.037 10.17 0.00 0.00 2.24
6876 7457 4.085876 GGCCATGCTCGCCAATAT 57.914 55.556 0.00 0.00 46.27 1.28
6879 7460 1.089920 GCCATGCTCGCCAATATAGG 58.910 55.000 0.00 0.00 0.00 2.57
6880 7461 1.611673 GCCATGCTCGCCAATATAGGT 60.612 52.381 0.00 0.00 0.00 3.08
6881 7462 2.079158 CCATGCTCGCCAATATAGGTG 58.921 52.381 0.00 0.00 40.55 4.00
6882 7463 2.550855 CCATGCTCGCCAATATAGGTGT 60.551 50.000 0.00 0.00 40.11 4.16
6892 7473 3.879295 CCAATATAGGTGTCCAAGTGCAG 59.121 47.826 0.00 0.00 0.00 4.41
6893 7474 3.845781 ATATAGGTGTCCAAGTGCAGG 57.154 47.619 0.00 0.00 0.00 4.85
6930 7511 5.955488 TCGTATCCTCTCTCTTTGAACAAG 58.045 41.667 0.00 0.00 0.00 3.16
7071 7655 0.878416 GGCACGCTGTTACCATCAAA 59.122 50.000 0.00 0.00 0.00 2.69
7072 7656 1.401018 GGCACGCTGTTACCATCAAAC 60.401 52.381 0.00 0.00 0.00 2.93
7073 7657 1.535462 GCACGCTGTTACCATCAAACT 59.465 47.619 0.00 0.00 0.00 2.66
7074 7658 2.739913 GCACGCTGTTACCATCAAACTA 59.260 45.455 0.00 0.00 0.00 2.24
7075 7659 3.424433 GCACGCTGTTACCATCAAACTAC 60.424 47.826 0.00 0.00 0.00 2.73
7076 7660 3.994392 CACGCTGTTACCATCAAACTACT 59.006 43.478 0.00 0.00 0.00 2.57
7077 7661 5.165676 CACGCTGTTACCATCAAACTACTA 58.834 41.667 0.00 0.00 0.00 1.82
7080 7664 6.877322 ACGCTGTTACCATCAAACTACTATTT 59.123 34.615 0.00 0.00 0.00 1.40
7082 7666 7.277981 CGCTGTTACCATCAAACTACTATTTCT 59.722 37.037 0.00 0.00 0.00 2.52
7123 7707 6.116680 ACAATTCTTTGATTCGCAGAGATC 57.883 37.500 0.00 0.00 37.55 2.75
7154 7738 8.230486 TCTTTCTTATCGAACTGAAATTTCTGC 58.770 33.333 21.11 8.31 0.00 4.26
7170 7754 9.233232 GAAATTTCTGCGGAATTCGTATAAAAT 57.767 29.630 9.22 0.92 41.72 1.82
7172 7756 6.671614 TTCTGCGGAATTCGTATAAAATGT 57.328 33.333 3.13 0.00 41.72 2.71
7173 7757 7.773864 TTCTGCGGAATTCGTATAAAATGTA 57.226 32.000 3.13 0.00 41.72 2.29
7174 7758 7.402811 TCTGCGGAATTCGTATAAAATGTAG 57.597 36.000 0.00 0.00 41.72 2.74
7175 7759 6.982141 TCTGCGGAATTCGTATAAAATGTAGT 59.018 34.615 0.00 0.00 41.72 2.73
7176 7760 8.136800 TCTGCGGAATTCGTATAAAATGTAGTA 58.863 33.333 0.00 0.00 41.72 1.82
7177 7761 8.064447 TGCGGAATTCGTATAAAATGTAGTAC 57.936 34.615 0.00 0.00 41.72 2.73
7198 7782 4.872664 ACTAGTATATGAAAGTGGCGAGC 58.127 43.478 0.00 0.00 0.00 5.03
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
30 31 2.858344 CCGAGTGATCCGTACAATTCAC 59.142 50.000 9.78 9.78 38.97 3.18
38 39 1.672854 CCAAGCCCGAGTGATCCGTA 61.673 60.000 0.00 0.00 0.00 4.02
97 105 5.292671 TCTTTCGTAGCAGTAGTACAGTG 57.707 43.478 2.52 0.00 0.00 3.66
101 109 6.998258 TTGTTTCTTTCGTAGCAGTAGTAC 57.002 37.500 0.00 0.00 0.00 2.73
104 141 7.117241 TCATTTGTTTCTTTCGTAGCAGTAG 57.883 36.000 0.00 0.00 0.00 2.57
119 156 6.986231 GGAACTGTTCATTTCCTCATTTGTTT 59.014 34.615 21.01 0.00 38.65 2.83
140 177 0.096454 GTTACGGAATGCGCAGGAAC 59.904 55.000 18.32 11.67 0.00 3.62
143 180 1.302383 TTGGTTACGGAATGCGCAGG 61.302 55.000 18.32 7.65 0.00 4.85
147 184 2.977169 CTGTTTTTGGTTACGGAATGCG 59.023 45.455 0.00 0.00 0.00 4.73
154 191 7.109006 AGACGTATTACTGTTTTTGGTTACG 57.891 36.000 0.00 0.00 37.70 3.18
178 215 8.478066 TCTCAAGTACTGTACCTACGAATAGTA 58.522 37.037 14.05 0.00 0.00 1.82
179 216 7.334090 TCTCAAGTACTGTACCTACGAATAGT 58.666 38.462 14.05 0.00 0.00 2.12
181 218 8.565896 TTTCTCAAGTACTGTACCTACGAATA 57.434 34.615 14.05 2.93 0.00 1.75
182 219 7.458409 TTTCTCAAGTACTGTACCTACGAAT 57.542 36.000 14.05 0.00 0.00 3.34
183 220 6.882610 TTTCTCAAGTACTGTACCTACGAA 57.117 37.500 14.05 9.52 0.00 3.85
185 222 6.746364 GTCATTTCTCAAGTACTGTACCTACG 59.254 42.308 14.05 2.13 0.00 3.51
187 224 9.175312 CTAGTCATTTCTCAAGTACTGTACCTA 57.825 37.037 14.05 3.83 0.00 3.08
188 225 6.919775 AGTCATTTCTCAAGTACTGTACCT 57.080 37.500 14.05 0.00 0.00 3.08
190 227 7.540299 AGCTAGTCATTTCTCAAGTACTGTAC 58.460 38.462 9.93 9.93 0.00 2.90
191 228 7.612244 AGAGCTAGTCATTTCTCAAGTACTGTA 59.388 37.037 0.00 0.00 0.00 2.74
192 229 6.435904 AGAGCTAGTCATTTCTCAAGTACTGT 59.564 38.462 0.00 0.00 0.00 3.55
193 230 6.862209 AGAGCTAGTCATTTCTCAAGTACTG 58.138 40.000 0.00 0.00 0.00 2.74
215 252 6.831868 TGGTGCATACTTCAGTATACAGTAGA 59.168 38.462 5.50 0.00 39.06 2.59
234 271 0.179043 TTTGTTAGCCTCGTGGTGCA 60.179 50.000 5.26 0.00 35.27 4.57
236 273 2.159627 GTCATTTGTTAGCCTCGTGGTG 59.840 50.000 5.26 0.00 35.27 4.17
238 275 1.737793 GGTCATTTGTTAGCCTCGTGG 59.262 52.381 0.00 0.00 0.00 4.94
239 276 2.416547 CAGGTCATTTGTTAGCCTCGTG 59.583 50.000 0.00 0.00 0.00 4.35
261 317 2.414481 CTGAAACAACTGCTCGATGGAG 59.586 50.000 0.00 0.00 43.46 3.86
288 344 7.708752 AGAAGAGACGGATCAATCTTCAATAAC 59.291 37.037 20.89 2.47 46.51 1.89
289 345 7.786030 AGAAGAGACGGATCAATCTTCAATAA 58.214 34.615 20.89 0.00 46.51 1.40
290 346 7.353414 AGAAGAGACGGATCAATCTTCAATA 57.647 36.000 20.89 0.00 46.51 1.90
291 347 6.232581 AGAAGAGACGGATCAATCTTCAAT 57.767 37.500 20.89 7.36 46.51 2.57
306 362 2.358582 GCCTAACCTACGGAGAAGAGAC 59.641 54.545 0.00 0.00 0.00 3.36
336 392 9.967245 CGTGTTCTCTCGAATGAAAATTTATTA 57.033 29.630 0.00 0.00 33.21 0.98
337 393 7.481798 GCGTGTTCTCTCGAATGAAAATTTATT 59.518 33.333 0.00 0.00 33.21 1.40
338 394 6.961554 GCGTGTTCTCTCGAATGAAAATTTAT 59.038 34.615 0.00 0.00 33.21 1.40
352 408 2.717809 GCCGTTCGCGTGTTCTCTC 61.718 63.158 5.77 0.00 39.32 3.20
377 433 5.757886 CGGCCAATAATAATTGATTCACGT 58.242 37.500 2.24 0.00 44.50 4.49
378 434 4.616802 GCGGCCAATAATAATTGATTCACG 59.383 41.667 2.24 0.00 44.50 4.35
379 435 5.772521 AGCGGCCAATAATAATTGATTCAC 58.227 37.500 2.24 0.00 44.50 3.18
402 459 6.421501 GTCGTCTAGAGTTCGAGATCTTCATA 59.578 42.308 4.34 0.00 34.33 2.15
504 561 3.769300 GGTAATCATTGCCTTTTCCCACT 59.231 43.478 0.00 0.00 32.08 4.00
510 567 2.107366 CCCGGGTAATCATTGCCTTTT 58.893 47.619 14.18 0.00 35.54 2.27
637 695 3.068691 CGTCGGAGAAGGAGGGCA 61.069 66.667 0.00 0.00 39.69 5.36
762 826 3.270839 GAGGATGCAGCTGCGCTC 61.271 66.667 32.11 28.22 45.83 5.03
767 831 1.807886 GGCAAAGAGGATGCAGCTG 59.192 57.895 10.11 10.11 45.60 4.24
879 943 0.541863 CGACTCAACCTATGGGCCTT 59.458 55.000 4.53 0.00 35.63 4.35
934 1001 2.034376 ATTTGGGTTGGCCGCGTA 59.966 55.556 4.92 0.00 34.97 4.42
959 1026 2.762459 ATCTTACGGGCCCTCGCA 60.762 61.111 22.43 0.00 36.38 5.10
960 1027 2.029221 GATCTTACGGGCCCTCGC 59.971 66.667 22.43 0.00 0.00 5.03
1118 1192 2.666596 GATCCAGGTGTCCCCATCGC 62.667 65.000 0.00 0.00 34.66 4.58
1132 1206 1.906824 GCCTACCGATCCCGATCCA 60.907 63.158 0.00 0.00 38.22 3.41
1239 1325 1.209640 GAAGTCTCGGCGTCGTCTT 59.790 57.895 10.18 12.77 37.69 3.01
1334 1420 7.385205 CAGAAAATCCAAGAGAGAAAACGAGTA 59.615 37.037 0.00 0.00 0.00 2.59
1335 1421 6.203723 CAGAAAATCCAAGAGAGAAAACGAGT 59.796 38.462 0.00 0.00 0.00 4.18
1368 1455 1.134965 CAAACTCCTCCAGTAGGCTCG 60.135 57.143 0.00 0.00 46.10 5.03
1375 1462 2.357517 CGCGCAAACTCCTCCAGT 60.358 61.111 8.75 0.00 36.64 4.00
1477 1564 0.248907 CCACCCATACGCTGACTACG 60.249 60.000 0.00 0.00 0.00 3.51
1516 1603 1.069596 GTTTGGGGCTTGGCTTGTG 59.930 57.895 0.00 0.00 0.00 3.33
1550 1637 1.754745 GACTCTGCACTGGAACCCA 59.245 57.895 0.00 0.00 0.00 4.51
1586 1673 8.148437 AGAACTGGAGCATCTATGATGATATT 57.852 34.615 11.25 0.00 33.73 1.28
1594 1681 5.064452 GTGAACAAGAACTGGAGCATCTATG 59.936 44.000 0.00 0.00 33.73 2.23
1662 1749 9.396022 CCACCAACTCAGATATTATAACAGTTT 57.604 33.333 0.00 0.00 0.00 2.66
1663 1750 8.548877 ACCACCAACTCAGATATTATAACAGTT 58.451 33.333 0.00 0.00 0.00 3.16
1690 1790 1.573108 TCTCAGAGGGTGAATGGACC 58.427 55.000 0.00 0.00 33.60 4.46
1712 1812 4.790765 AATTTCTGGCAACTTAAGAGGC 57.209 40.909 10.09 13.54 37.61 4.70
1779 1887 6.001460 TCAAATCAACTAACCAAAGGATCGT 58.999 36.000 0.00 0.00 0.00 3.73
1897 2005 5.127356 GTCTTATATTATGGGACGGAGGGAG 59.873 48.000 0.00 0.00 0.00 4.30
1898 2006 5.021458 GTCTTATATTATGGGACGGAGGGA 58.979 45.833 0.00 0.00 0.00 4.20
1899 2007 4.142227 CGTCTTATATTATGGGACGGAGGG 60.142 50.000 17.59 0.46 43.69 4.30
1907 2015 9.659830 GCTTGTAAAAACGTCTTATATTATGGG 57.340 33.333 0.00 0.00 0.00 4.00
1915 2023 9.620660 CCATTTTAGCTTGTAAAAACGTCTTAT 57.379 29.630 0.00 0.00 31.26 1.73
1916 2024 7.592164 GCCATTTTAGCTTGTAAAAACGTCTTA 59.408 33.333 0.00 0.00 31.26 2.10
1917 2025 6.419710 GCCATTTTAGCTTGTAAAAACGTCTT 59.580 34.615 0.00 0.00 31.26 3.01
1918 2026 5.918576 GCCATTTTAGCTTGTAAAAACGTCT 59.081 36.000 0.00 0.00 31.26 4.18
1919 2027 5.918576 AGCCATTTTAGCTTGTAAAAACGTC 59.081 36.000 0.00 0.00 37.24 4.34
1920 2028 5.838529 AGCCATTTTAGCTTGTAAAAACGT 58.161 33.333 0.00 0.00 37.24 3.99
1931 2039 4.450053 TGTTTTTGCAAGCCATTTTAGCT 58.550 34.783 0.00 0.00 44.19 3.32
1932 2040 4.809815 TGTTTTTGCAAGCCATTTTAGC 57.190 36.364 0.00 0.00 0.00 3.09
1933 2041 6.790285 AGATGTTTTTGCAAGCCATTTTAG 57.210 33.333 0.00 0.00 0.00 1.85
1934 2042 7.712639 TGTAAGATGTTTTTGCAAGCCATTTTA 59.287 29.630 0.00 6.60 0.00 1.52
1935 2043 6.541641 TGTAAGATGTTTTTGCAAGCCATTTT 59.458 30.769 0.00 7.48 0.00 1.82
1936 2044 6.054295 TGTAAGATGTTTTTGCAAGCCATTT 58.946 32.000 0.00 0.00 0.00 2.32
1937 2045 5.609423 TGTAAGATGTTTTTGCAAGCCATT 58.391 33.333 0.00 0.00 0.00 3.16
1938 2046 5.212532 TGTAAGATGTTTTTGCAAGCCAT 57.787 34.783 0.00 3.26 0.00 4.40
1939 2047 4.662468 TGTAAGATGTTTTTGCAAGCCA 57.338 36.364 0.00 0.00 0.00 4.75
1940 2048 5.466393 ACAATGTAAGATGTTTTTGCAAGCC 59.534 36.000 0.00 0.00 0.00 4.35
1941 2049 6.357198 CACAATGTAAGATGTTTTTGCAAGC 58.643 36.000 0.00 0.00 0.00 4.01
1942 2050 6.073657 CCCACAATGTAAGATGTTTTTGCAAG 60.074 38.462 0.00 0.00 0.00 4.01
1943 2051 5.757320 CCCACAATGTAAGATGTTTTTGCAA 59.243 36.000 0.00 0.00 0.00 4.08
1944 2052 5.069648 TCCCACAATGTAAGATGTTTTTGCA 59.930 36.000 0.00 0.00 0.00 4.08
1945 2053 5.405269 GTCCCACAATGTAAGATGTTTTTGC 59.595 40.000 0.00 0.00 0.00 3.68
1946 2054 5.629020 CGTCCCACAATGTAAGATGTTTTTG 59.371 40.000 0.00 0.00 0.00 2.44
1947 2055 5.278758 CCGTCCCACAATGTAAGATGTTTTT 60.279 40.000 0.00 0.00 0.00 1.94
1948 2056 4.217550 CCGTCCCACAATGTAAGATGTTTT 59.782 41.667 0.00 0.00 0.00 2.43
1949 2057 3.756434 CCGTCCCACAATGTAAGATGTTT 59.244 43.478 0.00 0.00 0.00 2.83
1950 2058 3.008594 TCCGTCCCACAATGTAAGATGTT 59.991 43.478 0.00 0.00 0.00 2.71
1951 2059 2.569853 TCCGTCCCACAATGTAAGATGT 59.430 45.455 0.00 0.00 0.00 3.06
1952 2060 3.260475 TCCGTCCCACAATGTAAGATG 57.740 47.619 0.00 0.00 0.00 2.90
1953 2061 3.263425 AGTTCCGTCCCACAATGTAAGAT 59.737 43.478 0.00 0.00 0.00 2.40
1954 2062 2.635915 AGTTCCGTCCCACAATGTAAGA 59.364 45.455 0.00 0.00 0.00 2.10
1955 2063 3.053831 AGTTCCGTCCCACAATGTAAG 57.946 47.619 0.00 0.00 0.00 2.34
1956 2064 3.495434 AAGTTCCGTCCCACAATGTAA 57.505 42.857 0.00 0.00 0.00 2.41
1957 2065 3.495434 AAAGTTCCGTCCCACAATGTA 57.505 42.857 0.00 0.00 0.00 2.29
1958 2066 2.358322 AAAGTTCCGTCCCACAATGT 57.642 45.000 0.00 0.00 0.00 2.71
1959 2067 2.360801 ACAAAAGTTCCGTCCCACAATG 59.639 45.455 0.00 0.00 0.00 2.82
1960 2068 2.661718 ACAAAAGTTCCGTCCCACAAT 58.338 42.857 0.00 0.00 0.00 2.71
1961 2069 2.131776 ACAAAAGTTCCGTCCCACAA 57.868 45.000 0.00 0.00 0.00 3.33
1962 2070 2.841215 CTACAAAAGTTCCGTCCCACA 58.159 47.619 0.00 0.00 0.00 4.17
1963 2071 1.534163 GCTACAAAAGTTCCGTCCCAC 59.466 52.381 0.00 0.00 0.00 4.61
1964 2072 1.141254 TGCTACAAAAGTTCCGTCCCA 59.859 47.619 0.00 0.00 0.00 4.37
1965 2073 1.886886 TGCTACAAAAGTTCCGTCCC 58.113 50.000 0.00 0.00 0.00 4.46
1966 2074 3.821841 CATTGCTACAAAAGTTCCGTCC 58.178 45.455 0.00 0.00 0.00 4.79
1967 2075 3.234386 GCATTGCTACAAAAGTTCCGTC 58.766 45.455 0.16 0.00 0.00 4.79
1968 2076 2.350388 CGCATTGCTACAAAAGTTCCGT 60.350 45.455 7.12 0.00 0.00 4.69
1969 2077 2.241722 CGCATTGCTACAAAAGTTCCG 58.758 47.619 7.12 0.00 0.00 4.30
1970 2078 1.985684 GCGCATTGCTACAAAAGTTCC 59.014 47.619 0.30 0.00 41.73 3.62
1971 2079 1.643810 CGCGCATTGCTACAAAAGTTC 59.356 47.619 8.75 0.00 43.27 3.01
1972 2080 1.665735 CCGCGCATTGCTACAAAAGTT 60.666 47.619 8.75 0.00 43.27 2.66
1973 2081 0.109781 CCGCGCATTGCTACAAAAGT 60.110 50.000 8.75 0.00 43.27 2.66
1974 2082 0.798009 CCCGCGCATTGCTACAAAAG 60.798 55.000 8.75 0.00 43.27 2.27
1975 2083 1.211449 CCCGCGCATTGCTACAAAA 59.789 52.632 8.75 0.00 43.27 2.44
1976 2084 2.874019 CCCGCGCATTGCTACAAA 59.126 55.556 8.75 0.00 43.27 2.83
1977 2085 3.809775 GCCCGCGCATTGCTACAA 61.810 61.111 8.75 0.00 43.27 2.41
1989 2097 3.568007 TGTTATGGAGATTAAATGCCCGC 59.432 43.478 0.00 0.00 0.00 6.13
2368 2488 0.865769 GAAAGGCACTGTGGTGTACG 59.134 55.000 10.21 0.00 44.65 3.67
2422 2542 9.746711 GCAGTAAAATATCGCATAGTATTTCTG 57.253 33.333 0.00 0.00 31.26 3.02
2711 2831 2.589014 GCCTCTTGTTCATGCTTTTCG 58.411 47.619 0.00 0.00 0.00 3.46
2955 3075 2.158475 AGTGAGCCTGGAATGGACAAAA 60.158 45.455 0.00 0.00 0.00 2.44
3457 3577 8.178964 GTGTCACTTGTACATTTTCTGTTGTTA 58.821 33.333 0.00 0.00 39.39 2.41
3483 3603 2.969628 ACTGTCTTATCCTTCGCCAG 57.030 50.000 0.00 0.00 0.00 4.85
3554 3674 4.103357 GCATTCTCTCAATGTGATTGTGC 58.897 43.478 0.00 0.00 41.02 4.57
3677 3797 0.882042 CAAACTGCTGCTCCAGTCGT 60.882 55.000 9.68 0.58 44.86 4.34
3782 3902 4.497300 CACCATTATGTTCCTTTTGCTGG 58.503 43.478 0.00 0.00 0.00 4.85
4023 4146 3.019933 AGTCTTGCGTTCTCTCTCAAC 57.980 47.619 0.00 0.00 0.00 3.18
4382 4505 2.489329 ACCAAAGATGCCATGAAAGTCG 59.511 45.455 0.00 0.00 0.00 4.18
4479 4602 2.549754 CCTCAACACTGCTAACCAAGTG 59.450 50.000 1.41 1.41 38.17 3.16
4619 4742 2.673368 CGAACTAGGACCATTGTTCTGC 59.327 50.000 16.64 0.00 37.31 4.26
4641 4764 3.326836 TGTGACAAGCGGAATCATGTA 57.673 42.857 0.00 0.00 0.00 2.29
4666 4789 3.054802 AGAAGGATCATCCACAGGTTCAC 60.055 47.826 6.42 0.00 39.61 3.18
4704 4827 1.811266 CGCCATCAACAGACCCGAG 60.811 63.158 0.00 0.00 0.00 4.63
4828 4951 6.539173 TCAGAAGTACCATTCCTAAAAGCAA 58.461 36.000 0.00 0.00 0.00 3.91
5252 5381 2.695666 ACAGAATACAGAGTCCATCCCG 59.304 50.000 0.00 0.00 0.00 5.14
5274 5403 1.302351 GACCTGAGTGCAAGCTGCT 60.302 57.895 0.00 0.00 45.31 4.24
5283 5412 0.326264 CTTTCCCTGGGACCTGAGTG 59.674 60.000 16.85 0.00 0.00 3.51
5291 5420 0.475632 TTCTGGAGCTTTCCCTGGGA 60.476 55.000 12.53 12.53 0.00 4.37
5297 5426 2.816672 CTCTGGTTTTCTGGAGCTTTCC 59.183 50.000 0.00 0.00 0.00 3.13
5305 5434 4.065789 GTGTTCTACCTCTGGTTTTCTGG 58.934 47.826 0.00 0.00 37.09 3.86
5374 5503 4.020543 CCCTGAACTAGTAGCTTCTCTGT 58.979 47.826 0.00 0.00 0.00 3.41
5384 5513 2.098607 CGCGACATTCCCTGAACTAGTA 59.901 50.000 0.00 0.00 0.00 1.82
5387 5516 0.174845 CCGCGACATTCCCTGAACTA 59.825 55.000 8.23 0.00 0.00 2.24
5401 5530 1.078497 ACATGATTTCCAGCCGCGA 60.078 52.632 8.23 0.00 0.00 5.87
5406 5535 4.205587 AGATCTTCCACATGATTTCCAGC 58.794 43.478 0.00 0.00 0.00 4.85
5486 5615 3.631686 CGAAAGCCATTCCCAATATGTCA 59.368 43.478 0.00 0.00 34.34 3.58
5498 5627 4.386867 TCTCTTCGATACGAAAGCCATT 57.613 40.909 7.90 0.00 45.23 3.16
5521 5650 1.276421 GAGAAGGGCTGCTTGTACTCA 59.724 52.381 0.00 0.00 0.00 3.41
5543 5672 3.479489 TGATTCAGCAAGCAAGACTTCA 58.521 40.909 0.00 0.00 36.04 3.02
5716 5845 1.968704 AGCATCGACCTCTGACGATA 58.031 50.000 0.00 0.00 45.21 2.92
5718 5847 0.171231 CAAGCATCGACCTCTGACGA 59.829 55.000 0.00 0.00 42.43 4.20
5825 5954 1.364626 GCTCTGGCAGATCAACCACG 61.365 60.000 19.11 4.66 38.54 4.94
5957 6086 5.470098 AGCCATTACGCATTTAACCTAGATG 59.530 40.000 0.00 0.00 0.00 2.90
5976 6105 8.170061 AGTCTTATCTCTGATAAGTAGAGCCAT 58.830 37.037 20.15 0.00 41.11 4.40
5992 6121 5.001232 AGCTGAGGATACGAGTCTTATCTC 58.999 45.833 14.36 10.84 46.39 2.75
6029 6158 4.151883 ACATGCCACACCAGTTAAGAAAT 58.848 39.130 0.00 0.00 0.00 2.17
6091 6220 7.214381 TGTTCGGGGAGATATATACACAAAAG 58.786 38.462 0.00 0.00 0.00 2.27
6101 6230 8.660295 ACATTTATACTGTTCGGGGAGATATA 57.340 34.615 0.00 0.00 0.00 0.86
6145 6277 1.648720 CACACCACACGGCAGAAAG 59.351 57.895 0.00 0.00 34.57 2.62
6211 6343 9.177608 TGGATACTTCAATGATTTAAAGGTCAG 57.822 33.333 0.00 0.00 37.61 3.51
6228 6362 6.319141 ACTCTTTGCAGTTTTGGATACTTC 57.681 37.500 0.00 0.00 37.61 3.01
6261 6397 5.349817 AGAACATTTTCAGAGTGCTCGTATG 59.650 40.000 0.00 0.00 33.72 2.39
6458 7028 5.507180 CGACACGCTCTTATATTATGGTACG 59.493 44.000 0.00 0.00 0.00 3.67
6460 7030 6.806388 TCGACACGCTCTTATATTATGGTA 57.194 37.500 0.00 0.00 0.00 3.25
6476 7046 5.084055 GCTTATAAAAGGGTTTTCGACACG 58.916 41.667 0.00 0.00 36.52 4.49
6482 7052 5.632244 TCGTGGCTTATAAAAGGGTTTTC 57.368 39.130 0.00 0.00 34.19 2.29
6510 7080 7.611855 TGCTTTTTGACCCAAAGGAAATAAAAA 59.388 29.630 0.00 0.00 34.72 1.94
6511 7081 7.112779 TGCTTTTTGACCCAAAGGAAATAAAA 58.887 30.769 0.00 0.00 34.72 1.52
6512 7082 6.653989 TGCTTTTTGACCCAAAGGAAATAAA 58.346 32.000 0.00 0.00 34.72 1.40
6513 7083 6.240549 TGCTTTTTGACCCAAAGGAAATAA 57.759 33.333 0.00 0.00 34.72 1.40
6514 7084 5.878406 TGCTTTTTGACCCAAAGGAAATA 57.122 34.783 0.00 0.00 34.72 1.40
6515 7085 4.769345 TGCTTTTTGACCCAAAGGAAAT 57.231 36.364 0.00 0.00 34.72 2.17
6516 7086 4.257731 GTTGCTTTTTGACCCAAAGGAAA 58.742 39.130 1.51 0.00 41.49 3.13
6521 7091 2.569404 ACTGGTTGCTTTTTGACCCAAA 59.431 40.909 0.00 0.00 32.39 3.28
6526 7096 3.068165 AGGCTTACTGGTTGCTTTTTGAC 59.932 43.478 0.00 0.00 0.00 3.18
6528 7098 3.733443 AGGCTTACTGGTTGCTTTTTG 57.267 42.857 0.00 0.00 0.00 2.44
6535 7105 4.589908 AGTGGAAATAGGCTTACTGGTTG 58.410 43.478 0.00 0.00 0.00 3.77
6540 7110 3.371965 TCCGAGTGGAAATAGGCTTACT 58.628 45.455 0.00 0.00 42.85 2.24
6552 7122 4.449743 CGTGTTAATTTTCTTCCGAGTGGA 59.550 41.667 0.00 0.00 44.61 4.02
6553 7123 4.449743 TCGTGTTAATTTTCTTCCGAGTGG 59.550 41.667 0.00 0.00 0.00 4.00
6557 7127 4.083696 GGCTTCGTGTTAATTTTCTTCCGA 60.084 41.667 0.00 0.00 0.00 4.55
6559 7129 4.482386 GGGCTTCGTGTTAATTTTCTTCC 58.518 43.478 0.00 0.00 0.00 3.46
6561 7131 3.057806 CGGGGCTTCGTGTTAATTTTCTT 60.058 43.478 0.00 0.00 0.00 2.52
6562 7132 2.486592 CGGGGCTTCGTGTTAATTTTCT 59.513 45.455 0.00 0.00 0.00 2.52
6564 7134 1.542472 CCGGGGCTTCGTGTTAATTTT 59.458 47.619 0.00 0.00 0.00 1.82
6566 7136 1.310216 GCCGGGGCTTCGTGTTAATT 61.310 55.000 2.18 0.00 38.26 1.40
6567 7137 1.747745 GCCGGGGCTTCGTGTTAAT 60.748 57.895 2.18 0.00 38.26 1.40
6568 7138 2.358984 GCCGGGGCTTCGTGTTAA 60.359 61.111 2.18 0.00 38.26 2.01
6569 7139 4.397832 GGCCGGGGCTTCGTGTTA 62.398 66.667 14.22 0.00 41.60 2.41
6574 7144 4.530857 CTACTGGCCGGGGCTTCG 62.531 72.222 22.12 12.15 41.60 3.79
6575 7145 1.619807 TTACTACTGGCCGGGGCTTC 61.620 60.000 22.12 0.00 41.60 3.86
6576 7146 0.986550 ATTACTACTGGCCGGGGCTT 60.987 55.000 22.12 11.05 41.60 4.35
6577 7147 0.986550 AATTACTACTGGCCGGGGCT 60.987 55.000 22.12 4.77 41.60 5.19
6578 7148 0.534427 GAATTACTACTGGCCGGGGC 60.534 60.000 18.00 14.65 41.06 5.80
6580 7150 1.485066 AGTGAATTACTACTGGCCGGG 59.515 52.381 18.00 5.11 38.04 5.73
6589 7159 8.824756 AGTGAGAATCCAGTAGTGAATTACTA 57.175 34.615 0.00 0.00 40.89 1.82
6590 7160 7.726033 AGTGAGAATCCAGTAGTGAATTACT 57.274 36.000 0.00 0.00 43.56 2.24
6592 7162 7.201794 CGGTAGTGAGAATCCAGTAGTGAATTA 60.202 40.741 0.00 0.00 0.00 1.40
6593 7163 6.405953 CGGTAGTGAGAATCCAGTAGTGAATT 60.406 42.308 0.00 0.00 0.00 2.17
6594 7164 5.067936 CGGTAGTGAGAATCCAGTAGTGAAT 59.932 44.000 0.00 0.00 0.00 2.57
6595 7165 4.398358 CGGTAGTGAGAATCCAGTAGTGAA 59.602 45.833 0.00 0.00 0.00 3.18
6596 7166 3.945921 CGGTAGTGAGAATCCAGTAGTGA 59.054 47.826 0.00 0.00 0.00 3.41
6597 7167 3.695060 ACGGTAGTGAGAATCCAGTAGTG 59.305 47.826 0.00 0.00 0.00 2.74
6598 7168 3.965694 ACGGTAGTGAGAATCCAGTAGT 58.034 45.455 0.00 0.00 0.00 2.73
6599 7169 5.763698 TGATACGGTAGTGAGAATCCAGTAG 59.236 44.000 0.00 0.00 0.00 2.57
6600 7170 5.687780 TGATACGGTAGTGAGAATCCAGTA 58.312 41.667 0.00 0.00 0.00 2.74
6601 7171 4.533815 TGATACGGTAGTGAGAATCCAGT 58.466 43.478 0.00 0.00 0.00 4.00
6603 7173 5.137551 TCATGATACGGTAGTGAGAATCCA 58.862 41.667 0.00 0.00 0.00 3.41
6604 7174 5.707242 TCATGATACGGTAGTGAGAATCC 57.293 43.478 0.00 0.00 0.00 3.01
6605 7175 6.914259 TGATCATGATACGGTAGTGAGAATC 58.086 40.000 8.54 0.00 0.00 2.52
6606 7176 6.901081 TGATCATGATACGGTAGTGAGAAT 57.099 37.500 8.54 0.00 0.00 2.40
6608 7178 6.265422 ACATTGATCATGATACGGTAGTGAGA 59.735 38.462 8.54 0.00 36.24 3.27
6609 7179 6.450545 ACATTGATCATGATACGGTAGTGAG 58.549 40.000 8.54 0.00 36.24 3.51
6612 7182 7.152645 GGTTACATTGATCATGATACGGTAGT 58.847 38.462 8.54 5.80 36.24 2.73
6613 7183 7.116376 GTGGTTACATTGATCATGATACGGTAG 59.884 40.741 8.54 0.00 36.24 3.18
6614 7184 6.926826 GTGGTTACATTGATCATGATACGGTA 59.073 38.462 8.54 6.55 36.24 4.02
6615 7185 5.758296 GTGGTTACATTGATCATGATACGGT 59.242 40.000 8.54 7.50 36.24 4.83
6616 7186 5.179368 GGTGGTTACATTGATCATGATACGG 59.821 44.000 8.54 1.54 36.24 4.02
6617 7187 5.757808 TGGTGGTTACATTGATCATGATACG 59.242 40.000 8.54 0.00 36.24 3.06
6618 7188 7.566760 TTGGTGGTTACATTGATCATGATAC 57.433 36.000 8.54 0.88 36.24 2.24
6619 7189 8.765488 AATTGGTGGTTACATTGATCATGATA 57.235 30.769 8.54 0.00 36.24 2.15
6660 7230 2.094442 TCCTGTTTGATCACGTCGCATA 60.094 45.455 0.00 0.00 0.00 3.14
6661 7231 1.078709 CCTGTTTGATCACGTCGCAT 58.921 50.000 0.00 0.00 0.00 4.73
6664 7234 2.347697 TCTCCTGTTTGATCACGTCG 57.652 50.000 0.00 0.00 0.00 5.12
6687 7257 1.402968 CATGCCTACACAATGTGAGCC 59.597 52.381 21.34 3.83 36.96 4.70
6693 7263 2.362736 AGCTCACATGCCTACACAATG 58.637 47.619 0.00 0.00 0.00 2.82
6694 7264 2.751259 CAAGCTCACATGCCTACACAAT 59.249 45.455 0.00 0.00 0.00 2.71
6695 7265 2.153645 CAAGCTCACATGCCTACACAA 58.846 47.619 0.00 0.00 0.00 3.33
6696 7266 1.812235 CAAGCTCACATGCCTACACA 58.188 50.000 0.00 0.00 0.00 3.72
6697 7267 0.449388 GCAAGCTCACATGCCTACAC 59.551 55.000 0.00 0.00 34.44 2.90
6698 7268 0.325933 AGCAAGCTCACATGCCTACA 59.674 50.000 4.49 0.00 41.42 2.74
6699 7269 1.131883 CAAGCAAGCTCACATGCCTAC 59.868 52.381 4.49 0.00 41.42 3.18
6700 7270 1.271543 ACAAGCAAGCTCACATGCCTA 60.272 47.619 4.49 0.00 41.42 3.93
6701 7271 0.538977 ACAAGCAAGCTCACATGCCT 60.539 50.000 4.49 0.00 41.42 4.75
6702 7272 0.316204 AACAAGCAAGCTCACATGCC 59.684 50.000 4.49 0.00 41.42 4.40
6703 7273 1.415374 CAACAAGCAAGCTCACATGC 58.585 50.000 0.00 0.00 40.80 4.06
6786 7356 4.864334 CGGCCCATGAGCAGGACC 62.864 72.222 0.27 0.00 0.00 4.46
6820 7391 6.750963 CCGTCTTGTAGTTAAATGTCTCTACC 59.249 42.308 0.00 0.00 33.91 3.18
6827 7408 4.251268 GCCTCCGTCTTGTAGTTAAATGT 58.749 43.478 0.00 0.00 0.00 2.71
6835 7416 1.218316 GTGGGCCTCCGTCTTGTAG 59.782 63.158 4.53 0.00 35.24 2.74
6837 7418 2.526873 AGTGGGCCTCCGTCTTGT 60.527 61.111 4.53 0.00 35.24 3.16
6876 7457 1.488705 CCCCTGCACTTGGACACCTA 61.489 60.000 0.00 0.00 0.00 3.08
6879 7460 0.678048 GATCCCCTGCACTTGGACAC 60.678 60.000 0.00 0.00 0.00 3.67
6880 7461 1.685224 GATCCCCTGCACTTGGACA 59.315 57.895 0.00 0.00 0.00 4.02
6881 7462 1.077429 GGATCCCCTGCACTTGGAC 60.077 63.158 0.00 0.00 0.00 4.02
6882 7463 0.920763 ATGGATCCCCTGCACTTGGA 60.921 55.000 9.90 0.00 0.00 3.53
6892 7473 1.358152 TACGAATCCCATGGATCCCC 58.642 55.000 15.22 0.00 42.27 4.81
6893 7474 2.092914 GGATACGAATCCCATGGATCCC 60.093 54.545 15.22 1.80 45.37 3.85
6930 7511 1.014352 ACCTGAATAATTCCGTGCGC 58.986 50.000 0.00 0.00 0.00 6.09
7024 7607 2.159352 TGTGAATGCAGCACATGTATGC 60.159 45.455 22.21 22.21 46.50 3.14
7025 7608 3.768468 TGTGAATGCAGCACATGTATG 57.232 42.857 18.10 1.52 41.00 2.39
7123 7707 7.421530 TTTCAGTTCGATAAGAAAGAACAGG 57.578 36.000 9.71 2.68 44.67 4.00
7170 7754 7.716560 TCGCCACTTTCATATACTAGTACTACA 59.283 37.037 4.31 0.00 0.00 2.74
7172 7756 7.094890 GCTCGCCACTTTCATATACTAGTACTA 60.095 40.741 4.31 1.89 0.00 1.82
7173 7757 6.294065 GCTCGCCACTTTCATATACTAGTACT 60.294 42.308 4.31 0.00 0.00 2.73
7174 7758 5.857517 GCTCGCCACTTTCATATACTAGTAC 59.142 44.000 4.31 0.00 0.00 2.73
7175 7759 5.334646 CGCTCGCCACTTTCATATACTAGTA 60.335 44.000 4.77 4.77 0.00 1.82
7176 7760 4.556898 CGCTCGCCACTTTCATATACTAGT 60.557 45.833 0.00 0.00 0.00 2.57
7177 7761 3.914966 CGCTCGCCACTTTCATATACTAG 59.085 47.826 0.00 0.00 0.00 2.57
7180 7764 2.470821 ACGCTCGCCACTTTCATATAC 58.529 47.619 0.00 0.00 0.00 1.47
7184 7768 0.391661 ATGACGCTCGCCACTTTCAT 60.392 50.000 0.00 0.00 0.00 2.57


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.