Multiple sequence alignment - TraesCS2A01G199200

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS2A01G199200 chr2A 100.000 2288 0 0 1 2288 171849911 171852198 0.000000e+00 4226.0
1 TraesCS2A01G199200 chr6D 92.683 1722 113 10 1 1714 446604642 446602926 0.000000e+00 2470.0
2 TraesCS2A01G199200 chr2D 91.947 1726 127 9 3 1720 646800105 646798384 0.000000e+00 2407.0
3 TraesCS2A01G199200 chr2D 91.889 1726 126 9 3 1720 646883879 646882160 0.000000e+00 2399.0
4 TraesCS2A01G199200 chr2D 91.773 1726 131 9 3 1720 646961480 646959758 0.000000e+00 2390.0
5 TraesCS2A01G199200 chr2D 91.531 1724 122 11 3 1720 647091185 647089480 0.000000e+00 2353.0
6 TraesCS2A01G199200 chr2D 90.783 1725 128 14 3 1720 646863597 646861897 0.000000e+00 2276.0
7 TraesCS2A01G199200 chr2D 89.727 477 13 20 1729 2181 160343637 160344101 5.480000e-161 577.0
8 TraesCS2A01G199200 chr2D 97.368 38 1 0 2217 2254 160344126 160344163 5.280000e-07 65.8
9 TraesCS2A01G199200 chr1A 92.133 1716 109 9 1 1710 463969298 463970993 0.000000e+00 2398.0
10 TraesCS2A01G199200 chr1D 91.904 1717 124 12 3 1712 369900548 369902256 0.000000e+00 2386.0
11 TraesCS2A01G199200 chr7A 90.385 1716 154 7 1 1710 167800044 167798334 0.000000e+00 2244.0
12 TraesCS2A01G199200 chr7B 88.754 1725 151 17 1 1709 389093351 389095048 0.000000e+00 2071.0
13 TraesCS2A01G199200 chr2B 85.409 562 34 22 1729 2254 217275031 217275580 7.190000e-150 540.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS2A01G199200 chr2A 171849911 171852198 2287 False 4226.0 4226 100.0000 1 2288 1 chr2A.!!$F1 2287
1 TraesCS2A01G199200 chr6D 446602926 446604642 1716 True 2470.0 2470 92.6830 1 1714 1 chr6D.!!$R1 1713
2 TraesCS2A01G199200 chr2D 646798384 646800105 1721 True 2407.0 2407 91.9470 3 1720 1 chr2D.!!$R1 1717
3 TraesCS2A01G199200 chr2D 646882160 646883879 1719 True 2399.0 2399 91.8890 3 1720 1 chr2D.!!$R3 1717
4 TraesCS2A01G199200 chr2D 646959758 646961480 1722 True 2390.0 2390 91.7730 3 1720 1 chr2D.!!$R4 1717
5 TraesCS2A01G199200 chr2D 647089480 647091185 1705 True 2353.0 2353 91.5310 3 1720 1 chr2D.!!$R5 1717
6 TraesCS2A01G199200 chr2D 646861897 646863597 1700 True 2276.0 2276 90.7830 3 1720 1 chr2D.!!$R2 1717
7 TraesCS2A01G199200 chr2D 160343637 160344163 526 False 321.4 577 93.5475 1729 2254 2 chr2D.!!$F1 525
8 TraesCS2A01G199200 chr1A 463969298 463970993 1695 False 2398.0 2398 92.1330 1 1710 1 chr1A.!!$F1 1709
9 TraesCS2A01G199200 chr1D 369900548 369902256 1708 False 2386.0 2386 91.9040 3 1712 1 chr1D.!!$F1 1709
10 TraesCS2A01G199200 chr7A 167798334 167800044 1710 True 2244.0 2244 90.3850 1 1710 1 chr7A.!!$R1 1709
11 TraesCS2A01G199200 chr7B 389093351 389095048 1697 False 2071.0 2071 88.7540 1 1709 1 chr7B.!!$F1 1708
12 TraesCS2A01G199200 chr2B 217275031 217275580 549 False 540.0 540 85.4090 1729 2254 1 chr2B.!!$F1 525

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
795 818 0.179029 CGGAGGTTGACAACAAGGGT 60.179 55.0 19.58 0.0 36.64 4.34 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1722 1795 0.301687 CTGCTGCTTTATACGCACGG 59.698 55.0 0.0 0.0 33.19 4.94 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
318 326 1.076485 GCCTGATTCATGGCCCAGT 60.076 57.895 0.00 0.00 43.11 4.00
342 350 1.361668 GATGTCAACTGCCATCGCGT 61.362 55.000 5.77 0.00 38.08 6.01
371 379 1.339151 GGGTCAGGAATCAGCGTCTTT 60.339 52.381 0.00 0.00 0.00 2.52
454 462 1.284982 CCGAAGTTCGAGCACACCTG 61.285 60.000 26.37 2.47 43.74 4.00
496 504 2.814835 GGTCACCAACCGTCCACCT 61.815 63.158 0.00 0.00 38.58 4.00
578 587 0.397675 AGCTCATGACGATGGGGAGA 60.398 55.000 0.00 0.00 29.64 3.71
593 602 1.003696 GGGAGAAGGAAGGTTGACAGG 59.996 57.143 0.00 0.00 0.00 4.00
614 623 1.690985 GAGAAGAGAGGGGGTGGGG 60.691 68.421 0.00 0.00 0.00 4.96
624 633 0.252835 GGGGGTGGGGTAAGTAGTGA 60.253 60.000 0.00 0.00 0.00 3.41
627 636 2.474112 GGGTGGGGTAAGTAGTGATGA 58.526 52.381 0.00 0.00 0.00 2.92
632 641 3.031736 GGGGTAAGTAGTGATGAGCAGA 58.968 50.000 0.00 0.00 0.00 4.26
708 719 8.547967 TTGTAACTACAAGCTCTTCAATTAGG 57.452 34.615 0.00 0.00 40.93 2.69
710 721 4.184629 ACTACAAGCTCTTCAATTAGGCG 58.815 43.478 0.00 0.00 0.00 5.52
717 728 4.081642 AGCTCTTCAATTAGGCGTGAACTA 60.082 41.667 0.00 0.00 30.73 2.24
795 818 0.179029 CGGAGGTTGACAACAAGGGT 60.179 55.000 19.58 0.00 36.64 4.34
855 878 1.445716 CGCCTACCGTCGAGGAAGAT 61.446 60.000 6.70 0.00 45.00 2.40
875 898 2.636412 CGAAGACGCCTGAGGGTGA 61.636 63.158 0.00 0.00 45.39 4.02
879 902 3.343788 GACGCCTGAGGGTGACGAG 62.344 68.421 0.00 0.00 45.39 4.18
968 993 1.242076 CCAACTCACTTCTGCAAGGG 58.758 55.000 0.00 0.00 33.80 3.95
969 994 1.477558 CCAACTCACTTCTGCAAGGGT 60.478 52.381 0.00 0.00 34.24 4.34
996 1021 2.472695 TACCGAAGCTTGAGTGCATT 57.527 45.000 2.10 0.00 34.99 3.56
997 1022 1.609208 ACCGAAGCTTGAGTGCATTT 58.391 45.000 2.10 0.00 34.99 2.32
1023 1048 0.038744 CCCTGGACTTCACCAAGCAT 59.961 55.000 0.00 0.00 39.59 3.79
1064 1089 3.817647 GAGTTCAAGCTCAGGAACAACAT 59.182 43.478 20.96 6.78 44.46 2.71
1155 1180 2.387309 CGCAGCCGTTCATCAGATT 58.613 52.632 0.00 0.00 0.00 2.40
1223 1248 2.159240 TCAAGGTCATCATCTTCGACGG 60.159 50.000 0.00 0.00 0.00 4.79
1254 1279 1.593209 GGTCGTCAACAAGTGCGGA 60.593 57.895 0.00 0.00 0.00 5.54
1288 1313 1.945354 CTTCGCCGCCAAGGAGTAGA 61.945 60.000 0.00 0.00 45.00 2.59
1366 1391 6.858993 GGTTTATGCGTTGAACTGTTATGAAA 59.141 34.615 0.00 0.00 0.00 2.69
1448 1473 0.320050 TGATGTGTGCTGCCGAAGTA 59.680 50.000 0.00 0.00 0.00 2.24
1453 1478 0.899019 TGTGCTGCCGAAGTATGGTA 59.101 50.000 0.00 0.00 0.00 3.25
1534 1559 3.091545 ACCATGCCTTGTGTTTATCCAG 58.908 45.455 0.00 0.00 0.00 3.86
1545 1570 5.312895 TGTGTTTATCCAGTAACATGCAGT 58.687 37.500 0.00 0.00 36.72 4.40
1560 1585 1.340502 TGCAGTCAACCAAACACCAGA 60.341 47.619 0.00 0.00 0.00 3.86
1576 1633 1.227556 AGACAGTGTGGTTCGTGCC 60.228 57.895 0.00 0.00 0.00 5.01
1577 1634 1.522806 GACAGTGTGGTTCGTGCCA 60.523 57.895 0.00 0.00 35.93 4.92
1578 1635 0.884704 GACAGTGTGGTTCGTGCCAT 60.885 55.000 0.00 0.00 41.08 4.40
1579 1636 1.165907 ACAGTGTGGTTCGTGCCATG 61.166 55.000 0.00 0.00 41.08 3.66
1580 1637 2.255252 GTGTGGTTCGTGCCATGC 59.745 61.111 4.24 0.00 41.08 4.06
1581 1638 2.203266 TGTGGTTCGTGCCATGCA 60.203 55.556 0.00 0.00 41.08 3.96
1582 1639 2.260154 TGTGGTTCGTGCCATGCAG 61.260 57.895 0.00 0.00 40.08 4.41
1583 1640 2.672651 TGGTTCGTGCCATGCAGG 60.673 61.111 2.54 2.54 44.42 4.85
1598 1655 0.815734 GCAGGCAAGAAGACATGCAT 59.184 50.000 0.00 0.00 41.66 3.96
1620 1693 5.397142 TGCAACCAAACAACATGCATATA 57.603 34.783 0.00 0.00 41.67 0.86
1623 1696 6.151817 TGCAACCAAACAACATGCATATAGTA 59.848 34.615 0.00 0.00 41.67 1.82
1659 1732 5.361427 CATTTGCATAGCCAAATTGGATGA 58.639 37.500 17.47 0.00 41.97 2.92
1679 1752 2.401583 AGAAGTGTATGCAATGCGGA 57.598 45.000 0.00 0.00 0.00 5.54
1688 1761 2.979814 TGCAATGCGGATACTGTAGT 57.020 45.000 0.00 0.00 0.00 2.73
1713 1786 1.745264 CAACCAAACACGCCCCAAT 59.255 52.632 0.00 0.00 0.00 3.16
1717 1790 0.319469 CCAAACACGCCCCAATTGAC 60.319 55.000 7.12 0.00 0.00 3.18
1720 1793 0.179004 AACACGCCCCAATTGACTCA 60.179 50.000 7.12 0.00 0.00 3.41
1721 1794 0.179004 ACACGCCCCAATTGACTCAA 60.179 50.000 7.12 0.00 0.00 3.02
1722 1795 0.240945 CACGCCCCAATTGACTCAAC 59.759 55.000 7.12 0.00 0.00 3.18
1723 1796 0.893727 ACGCCCCAATTGACTCAACC 60.894 55.000 7.12 0.00 0.00 3.77
1724 1797 1.883021 GCCCCAATTGACTCAACCG 59.117 57.895 7.12 0.00 0.00 4.44
1725 1798 0.893727 GCCCCAATTGACTCAACCGT 60.894 55.000 7.12 0.00 0.00 4.83
1726 1799 0.881118 CCCCAATTGACTCAACCGTG 59.119 55.000 7.12 0.00 0.00 4.94
1727 1800 0.240945 CCCAATTGACTCAACCGTGC 59.759 55.000 7.12 0.00 0.00 5.34
1824 1904 0.524392 CTCGCGAGTTAGTGCTCTGG 60.524 60.000 27.79 0.00 33.55 3.86
1858 1938 3.996150 AGATTTGGCGCTTATCCAATG 57.004 42.857 7.64 0.00 42.57 2.82
1990 2071 2.233605 TATTCGCACCCCACTGACGG 62.234 60.000 0.00 0.00 0.00 4.79
1994 2075 3.625897 CACCCCACTGACGGCTCA 61.626 66.667 0.00 0.00 0.00 4.26
1995 2076 3.626924 ACCCCACTGACGGCTCAC 61.627 66.667 0.00 0.00 0.00 3.51
2073 2162 8.462016 ACAAATGCTCAACTAGAATGGAAATAC 58.538 33.333 0.00 0.00 0.00 1.89
2075 2164 8.443953 AATGCTCAACTAGAATGGAAATACTC 57.556 34.615 0.00 0.00 0.00 2.59
2078 2167 6.199342 GCTCAACTAGAATGGAAATACTCGAC 59.801 42.308 0.00 0.00 0.00 4.20
2079 2168 6.263344 TCAACTAGAATGGAAATACTCGACG 58.737 40.000 0.00 0.00 0.00 5.12
2130 2232 3.450115 CTCCTCCGGTCACGTCCC 61.450 72.222 0.00 0.00 38.78 4.46
2196 2298 0.884704 TCGCTGGAGGAAAAGCACAC 60.885 55.000 0.00 0.00 39.47 3.82
2259 2372 2.559998 CGTTATGCGAAAAATGGCCT 57.440 45.000 3.32 0.00 44.77 5.19
2260 2373 3.684103 CGTTATGCGAAAAATGGCCTA 57.316 42.857 3.32 0.00 44.77 3.93
2261 2374 3.359654 CGTTATGCGAAAAATGGCCTAC 58.640 45.455 3.32 0.00 44.77 3.18
2262 2375 3.359654 GTTATGCGAAAAATGGCCTACG 58.640 45.455 3.32 1.91 0.00 3.51
2263 2376 0.738389 ATGCGAAAAATGGCCTACGG 59.262 50.000 3.32 0.00 0.00 4.02
2264 2377 1.309499 TGCGAAAAATGGCCTACGGG 61.309 55.000 3.32 0.00 0.00 5.28
2274 2387 3.281240 CCTACGGGCACTACGTGT 58.719 61.111 0.00 0.00 45.20 4.49
2275 2388 1.588082 CCTACGGGCACTACGTGTT 59.412 57.895 0.00 0.00 45.20 3.32
2276 2389 0.734942 CCTACGGGCACTACGTGTTG 60.735 60.000 0.00 0.00 45.20 3.33
2277 2390 0.038892 CTACGGGCACTACGTGTTGT 60.039 55.000 0.00 0.00 45.20 3.32
2278 2391 0.318869 TACGGGCACTACGTGTTGTG 60.319 55.000 9.70 9.70 45.20 3.33
2282 2395 4.329619 CACTACGTGTTGTGCCGA 57.670 55.556 0.00 0.00 30.52 5.54
2283 2396 2.822306 CACTACGTGTTGTGCCGAT 58.178 52.632 0.00 0.00 30.52 4.18
2284 2397 1.985334 CACTACGTGTTGTGCCGATA 58.015 50.000 0.00 0.00 30.52 2.92
2285 2398 2.330286 CACTACGTGTTGTGCCGATAA 58.670 47.619 0.00 0.00 30.52 1.75
2286 2399 2.091588 CACTACGTGTTGTGCCGATAAC 59.908 50.000 0.00 0.00 30.52 1.89
2287 2400 1.657094 CTACGTGTTGTGCCGATAACC 59.343 52.381 0.00 0.00 0.00 2.85
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
28 29 4.259730 CGATGAAGAAGAAGATGAAGCGTG 60.260 45.833 0.00 0.00 0.00 5.34
29 30 3.862267 CGATGAAGAAGAAGATGAAGCGT 59.138 43.478 0.00 0.00 0.00 5.07
342 350 0.909610 ATTCCTGACCCAGCGAAGGA 60.910 55.000 0.00 0.00 37.04 3.36
371 379 3.838317 TGAAGGCCAGTAAAGAAGAGCTA 59.162 43.478 5.01 0.00 0.00 3.32
454 462 1.197721 CCAAGTTCGAGAACACCATGC 59.802 52.381 17.00 0.00 43.47 4.06
486 494 0.471211 TTCTTCCTCAGGTGGACGGT 60.471 55.000 0.00 0.00 35.58 4.83
567 576 0.252742 ACCTTCCTTCTCCCCATCGT 60.253 55.000 0.00 0.00 0.00 3.73
578 587 1.981495 CTCTCCCTGTCAACCTTCCTT 59.019 52.381 0.00 0.00 0.00 3.36
593 602 0.689412 CCACCCCCTCTCTTCTCTCC 60.689 65.000 0.00 0.00 0.00 3.71
614 623 5.124776 ACTCACTCTGCTCATCACTACTTAC 59.875 44.000 0.00 0.00 0.00 2.34
624 633 6.212388 CCCCTATATTTACTCACTCTGCTCAT 59.788 42.308 0.00 0.00 0.00 2.90
627 636 4.841246 CCCCCTATATTTACTCACTCTGCT 59.159 45.833 0.00 0.00 0.00 4.24
632 641 5.102783 TCTCCACCCCCTATATTTACTCACT 60.103 44.000 0.00 0.00 0.00 3.41
708 719 1.721489 CGCACAACACATAGTTCACGC 60.721 52.381 0.00 0.00 38.74 5.34
710 721 2.542178 TCACGCACAACACATAGTTCAC 59.458 45.455 0.00 0.00 38.74 3.18
717 728 0.179059 TGGAGTCACGCACAACACAT 60.179 50.000 0.00 0.00 0.00 3.21
795 818 2.058125 TTGGGTGAACGGGCTGCTTA 62.058 55.000 0.00 0.00 0.00 3.09
805 828 2.686816 CGTCGGGCATTGGGTGAAC 61.687 63.158 0.00 0.00 0.00 3.18
840 863 2.028420 TCGAATCTTCCTCGACGGTA 57.972 50.000 0.00 0.00 40.25 4.02
855 878 1.906824 ACCCTCAGGCGTCTTCGAA 60.907 57.895 0.00 0.00 38.98 3.71
875 898 3.461773 CCATGCCCTCGTCCTCGT 61.462 66.667 0.00 0.00 38.33 4.18
879 902 2.764128 TCCTCCATGCCCTCGTCC 60.764 66.667 0.00 0.00 0.00 4.79
947 971 1.202806 CCTTGCAGAAGTGAGTTGGGA 60.203 52.381 0.00 0.00 0.00 4.37
968 993 5.921408 CACTCAAGCTTCGGTATAAGGATAC 59.079 44.000 0.00 0.00 37.75 2.24
969 994 5.509163 GCACTCAAGCTTCGGTATAAGGATA 60.509 44.000 0.00 0.00 0.00 2.59
976 1001 2.698855 ATGCACTCAAGCTTCGGTAT 57.301 45.000 0.00 0.00 34.99 2.73
977 1002 2.472695 AATGCACTCAAGCTTCGGTA 57.527 45.000 0.00 0.00 34.99 4.02
1064 1089 3.393970 CCTTCCAGGAGCAGCCGA 61.394 66.667 0.00 0.00 43.43 5.54
1116 1141 0.849094 AGGTGGCCCAACCCTGATTA 60.849 55.000 8.63 0.00 41.54 1.75
1117 1142 0.849094 TAGGTGGCCCAACCCTGATT 60.849 55.000 8.63 0.00 41.54 2.57
1155 1180 2.034179 CGTCACCATGTAGCCGATCTTA 59.966 50.000 0.00 0.00 0.00 2.10
1223 1248 1.766143 GACGACCTCAATGCCATCGC 61.766 60.000 0.00 0.00 36.26 4.58
1268 1293 1.945354 CTACTCCTTGGCGGCGAAGA 61.945 60.000 23.83 9.56 0.00 2.87
1288 1313 4.035102 GAAAGAGGTGGCCCGGCT 62.035 66.667 9.86 0.00 35.12 5.52
1453 1478 2.616524 TGGCTAGTTGGTGAGGTTACT 58.383 47.619 0.00 0.00 0.00 2.24
1534 1559 4.041723 GTGTTTGGTTGACTGCATGTTAC 58.958 43.478 0.00 0.00 0.00 2.50
1545 1570 2.290641 ACACTGTCTGGTGTTTGGTTGA 60.291 45.455 0.00 0.00 46.71 3.18
1560 1585 1.148273 ATGGCACGAACCACACTGT 59.852 52.632 3.30 0.00 44.17 3.55
1576 1633 1.469251 GCATGTCTTCTTGCCTGCATG 60.469 52.381 0.00 0.00 38.33 4.06
1577 1634 0.815734 GCATGTCTTCTTGCCTGCAT 59.184 50.000 0.00 0.00 38.33 3.96
1578 1635 0.537828 TGCATGTCTTCTTGCCTGCA 60.538 50.000 0.00 0.00 41.89 4.41
1579 1636 0.815734 ATGCATGTCTTCTTGCCTGC 59.184 50.000 0.00 0.00 41.89 4.85
1580 1637 1.469251 GCATGCATGTCTTCTTGCCTG 60.469 52.381 26.79 0.00 41.89 4.85
1581 1638 0.815734 GCATGCATGTCTTCTTGCCT 59.184 50.000 26.79 0.00 41.89 4.75
1582 1639 0.528924 TGCATGCATGTCTTCTTGCC 59.471 50.000 26.79 8.24 41.89 4.52
1583 1640 1.990563 GTTGCATGCATGTCTTCTTGC 59.009 47.619 26.79 12.85 42.57 4.01
1584 1641 2.029739 TGGTTGCATGCATGTCTTCTTG 60.030 45.455 26.79 1.63 0.00 3.02
1585 1642 2.241160 TGGTTGCATGCATGTCTTCTT 58.759 42.857 26.79 0.00 0.00 2.52
1586 1643 1.913778 TGGTTGCATGCATGTCTTCT 58.086 45.000 26.79 0.00 0.00 2.85
1587 1644 2.728690 TTGGTTGCATGCATGTCTTC 57.271 45.000 26.79 14.96 0.00 2.87
1588 1645 2.102757 TGTTTGGTTGCATGCATGTCTT 59.897 40.909 26.79 0.00 0.00 3.01
1589 1646 1.687660 TGTTTGGTTGCATGCATGTCT 59.312 42.857 26.79 0.00 0.00 3.41
1590 1647 2.151881 TGTTTGGTTGCATGCATGTC 57.848 45.000 26.79 18.98 0.00 3.06
1591 1648 2.211806 GTTGTTTGGTTGCATGCATGT 58.788 42.857 26.79 0.00 0.00 3.21
1598 1655 2.616634 ATGCATGTTGTTTGGTTGCA 57.383 40.000 0.00 0.00 46.22 4.08
1620 1693 3.367703 GCAAATGCAGCCTCAAATGTACT 60.368 43.478 0.00 0.00 41.59 2.73
1623 1696 2.088950 GCAAATGCAGCCTCAAATGT 57.911 45.000 0.00 0.00 41.59 2.71
1650 1723 6.839124 TTGCATACACTTCTTCATCCAATT 57.161 33.333 0.00 0.00 0.00 2.32
1651 1724 6.682113 GCATTGCATACACTTCTTCATCCAAT 60.682 38.462 3.15 0.00 0.00 3.16
1659 1732 2.710377 TCCGCATTGCATACACTTCTT 58.290 42.857 9.69 0.00 0.00 2.52
1679 1752 1.674817 GGTTGCCGTGCACTACAGTAT 60.675 52.381 16.19 0.00 38.71 2.12
1688 1761 2.492090 GTGTTTGGTTGCCGTGCA 59.508 55.556 0.00 0.00 36.47 4.57
1713 1786 3.300852 TTATACGCACGGTTGAGTCAA 57.699 42.857 0.08 0.08 37.00 3.18
1717 1790 1.996898 TGCTTTATACGCACGGTTGAG 59.003 47.619 0.00 0.00 31.40 3.02
1720 1793 0.725117 GCTGCTTTATACGCACGGTT 59.275 50.000 0.00 0.00 33.19 4.44
1721 1794 0.390603 TGCTGCTTTATACGCACGGT 60.391 50.000 0.00 0.00 33.19 4.83
1722 1795 0.301687 CTGCTGCTTTATACGCACGG 59.698 55.000 0.00 0.00 33.19 4.94
1723 1796 1.256376 CTCTGCTGCTTTATACGCACG 59.744 52.381 0.00 0.00 33.19 5.34
1724 1797 2.029728 CACTCTGCTGCTTTATACGCAC 59.970 50.000 0.00 0.00 33.19 5.34
1725 1798 2.270923 CACTCTGCTGCTTTATACGCA 58.729 47.619 0.00 0.00 35.80 5.24
1726 1799 1.594862 CCACTCTGCTGCTTTATACGC 59.405 52.381 0.00 0.00 0.00 4.42
1727 1800 1.594862 GCCACTCTGCTGCTTTATACG 59.405 52.381 0.00 0.00 0.00 3.06
1798 1871 3.746492 AGCACTAACTCGCGAGAAATTTT 59.254 39.130 40.58 25.65 41.32 1.82
1799 1872 3.326747 AGCACTAACTCGCGAGAAATTT 58.673 40.909 40.58 26.01 41.32 1.82
1811 1890 6.360370 TCTTATGAAACCAGAGCACTAACT 57.640 37.500 0.00 0.00 0.00 2.24
1824 1904 6.366061 AGCGCCAAATCTTTTTCTTATGAAAC 59.634 34.615 2.29 0.00 41.34 2.78
1858 1938 1.209127 CGTCATTTGCAACCGTCCC 59.791 57.895 0.00 0.00 0.00 4.46
1864 1944 2.216263 GTGCACTTTCGTCATTTGCAAC 59.784 45.455 10.32 0.00 44.40 4.17
2014 2095 6.463995 ACAAAAGTTAAGCATTTCTGTGGA 57.536 33.333 0.00 0.00 0.00 4.02
2015 2096 7.538303 AAACAAAAGTTAAGCATTTCTGTGG 57.462 32.000 0.00 0.00 0.00 4.17
2016 2097 8.755018 CCTAAACAAAAGTTAAGCATTTCTGTG 58.245 33.333 0.00 0.00 0.00 3.66
2017 2098 7.926018 CCCTAAACAAAAGTTAAGCATTTCTGT 59.074 33.333 0.00 0.00 0.00 3.41
2020 2101 7.384115 GTCCCCTAAACAAAAGTTAAGCATTTC 59.616 37.037 0.00 0.00 0.00 2.17
2171 2273 2.758770 TTTTCCTCCAGCGACGACCG 62.759 60.000 0.00 0.00 42.21 4.79
2267 2380 1.657094 GGTTATCGGCACAACACGTAG 59.343 52.381 0.00 0.00 0.00 3.51
2268 2381 1.712401 GGTTATCGGCACAACACGTA 58.288 50.000 0.00 0.00 0.00 3.57
2269 2382 2.535588 GGTTATCGGCACAACACGT 58.464 52.632 0.00 0.00 0.00 4.49


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.