Multiple sequence alignment - TraesCS2A01G197400

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS2A01G197400 chr2A 100.000 4072 0 0 1 4072 166847074 166851145 0.000000e+00 7520
1 TraesCS2A01G197400 chr2A 98.611 72 1 0 113 184 166847122 166847193 1.190000e-25 128
2 TraesCS2A01G197400 chr2A 98.611 72 1 0 49 120 166847186 166847257 1.190000e-25 128
3 TraesCS2A01G197400 chr2D 96.418 2959 65 5 113 3070 157130847 157133765 0.000000e+00 4839
4 TraesCS2A01G197400 chr2D 88.148 405 25 7 3670 4069 157135199 157135585 1.030000e-125 460
5 TraesCS2A01G197400 chr2D 98.333 120 2 0 1 120 157130799 157130918 1.150000e-50 211
6 TraesCS2A01G197400 chr2B 94.200 2845 93 34 267 3062 214586316 214589137 0.000000e+00 4274
7 TraesCS2A01G197400 chr2B 82.410 415 28 20 3662 4067 214590658 214591036 1.830000e-83 320
8 TraesCS2A01G197400 chr2B 95.833 120 4 1 1 120 214586165 214586283 4.150000e-45 193
9 TraesCS2A01G197400 chr2B 96.226 106 3 1 113 218 214586213 214586317 5.410000e-39 172
10 TraesCS2A01G197400 chr4B 81.786 2789 317 105 283 2978 476187650 476184960 0.000000e+00 2159
11 TraesCS2A01G197400 chr4D 84.763 2087 220 51 938 2978 387811849 387809815 0.000000e+00 2002
12 TraesCS2A01G197400 chr4D 79.373 383 52 14 283 654 387812859 387812493 1.130000e-60 244
13 TraesCS2A01G197400 chr4A 83.476 1640 188 43 734 2333 69268684 69267088 0.000000e+00 1450
14 TraesCS2A01G197400 chr4A 85.837 466 41 6 2343 2797 69266913 69266462 4.760000e-129 472
15 TraesCS2A01G197400 chr4A 79.952 414 55 16 283 685 69269238 69268842 3.100000e-71 279


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS2A01G197400 chr2A 166847074 166851145 4071 False 7520.000000 7520 100.000000 1 4072 1 chr2A.!!$F1 4071
1 TraesCS2A01G197400 chr2D 157130799 157135585 4786 False 1836.666667 4839 94.299667 1 4069 3 chr2D.!!$F1 4068
2 TraesCS2A01G197400 chr2B 214586165 214591036 4871 False 1239.750000 4274 92.167250 1 4067 4 chr2B.!!$F1 4066
3 TraesCS2A01G197400 chr4B 476184960 476187650 2690 True 2159.000000 2159 81.786000 283 2978 1 chr4B.!!$R1 2695
4 TraesCS2A01G197400 chr4D 387809815 387812859 3044 True 1123.000000 2002 82.068000 283 2978 2 chr4D.!!$R1 2695
5 TraesCS2A01G197400 chr4A 69266462 69269238 2776 True 733.666667 1450 83.088333 283 2797 3 chr4A.!!$R1 2514

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
99 100 0.109723 AGCCCTTGGTTTGCGAGTAA 59.890 50.0 0.00 0.00 0.00 2.24 F
138 139 0.323633 TGGGATGGAACTGTGCATGG 60.324 55.0 0.00 0.00 35.67 3.66 F
848 1072 0.323725 CACCCTAGCCTTTGGTGCAT 60.324 55.0 2.64 0.00 42.71 3.96 F
874 1098 0.399949 TGCACCCAGTATCCCCTAGG 60.400 60.0 0.06 0.06 0.00 3.02 F
1762 2313 1.436195 TTCTGAACACACCGCTGCAC 61.436 55.0 0.00 0.00 0.00 4.57 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1026 1552 3.423539 TCCTTGATTTCCACTGGACTG 57.576 47.619 0.0 0.0 0.00 3.51 R
1142 1674 4.006319 GGAATGCCTATCAGAATGCCTAC 58.994 47.826 0.0 0.0 34.76 3.18 R
2687 3435 3.045634 TCCTCCTGTTTCTTGACTTCCA 58.954 45.455 0.0 0.0 0.00 3.53 R
2841 3589 4.357918 AAGAGCCAATGAACTGTGTACT 57.642 40.909 0.0 0.0 0.00 2.73 R
3602 5073 0.039165 CCTTCCTTTCAAACGCTGCC 60.039 55.000 0.0 0.0 0.00 4.85 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
80 81 1.026182 GGAACTGTGCATGGCGATGA 61.026 55.000 13.46 0.00 0.00 2.92
81 82 0.376152 GAACTGTGCATGGCGATGAG 59.624 55.000 13.46 3.68 0.00 2.90
91 92 4.002797 GCGATGAGCCCTTGGTTT 57.997 55.556 0.00 0.00 40.81 3.27
92 93 1.508088 GCGATGAGCCCTTGGTTTG 59.492 57.895 0.00 0.00 40.81 2.93
93 94 1.508088 CGATGAGCCCTTGGTTTGC 59.492 57.895 0.00 0.00 0.00 3.68
94 95 1.508088 GATGAGCCCTTGGTTTGCG 59.492 57.895 0.00 0.00 0.00 4.85
95 96 0.960364 GATGAGCCCTTGGTTTGCGA 60.960 55.000 0.00 0.00 0.00 5.10
96 97 0.962356 ATGAGCCCTTGGTTTGCGAG 60.962 55.000 0.00 0.00 0.00 5.03
97 98 1.600916 GAGCCCTTGGTTTGCGAGT 60.601 57.895 0.00 0.00 0.00 4.18
98 99 0.321298 GAGCCCTTGGTTTGCGAGTA 60.321 55.000 0.00 0.00 0.00 2.59
99 100 0.109723 AGCCCTTGGTTTGCGAGTAA 59.890 50.000 0.00 0.00 0.00 2.24
100 101 1.173913 GCCCTTGGTTTGCGAGTAAT 58.826 50.000 0.00 0.00 0.00 1.89
101 102 1.132453 GCCCTTGGTTTGCGAGTAATC 59.868 52.381 0.00 0.00 0.00 1.75
102 103 2.711542 CCCTTGGTTTGCGAGTAATCT 58.288 47.619 0.00 0.00 0.00 2.40
103 104 3.081804 CCCTTGGTTTGCGAGTAATCTT 58.918 45.455 0.00 0.00 0.00 2.40
104 105 3.127030 CCCTTGGTTTGCGAGTAATCTTC 59.873 47.826 0.00 0.00 0.00 2.87
105 106 4.003648 CCTTGGTTTGCGAGTAATCTTCT 58.996 43.478 0.00 0.00 0.00 2.85
106 107 4.455877 CCTTGGTTTGCGAGTAATCTTCTT 59.544 41.667 0.00 0.00 0.00 2.52
107 108 5.048713 CCTTGGTTTGCGAGTAATCTTCTTT 60.049 40.000 0.00 0.00 0.00 2.52
108 109 5.356882 TGGTTTGCGAGTAATCTTCTTTG 57.643 39.130 0.00 0.00 0.00 2.77
109 110 5.060506 TGGTTTGCGAGTAATCTTCTTTGA 58.939 37.500 0.00 0.00 0.00 2.69
110 111 5.705441 TGGTTTGCGAGTAATCTTCTTTGAT 59.295 36.000 0.00 0.00 0.00 2.57
111 112 6.128282 TGGTTTGCGAGTAATCTTCTTTGATC 60.128 38.462 0.00 0.00 0.00 2.92
112 113 6.251549 GTTTGCGAGTAATCTTCTTTGATCC 58.748 40.000 0.00 0.00 0.00 3.36
113 114 5.344743 TGCGAGTAATCTTCTTTGATCCT 57.655 39.130 0.00 0.00 0.00 3.24
114 115 5.734720 TGCGAGTAATCTTCTTTGATCCTT 58.265 37.500 0.00 0.00 0.00 3.36
115 116 6.173339 TGCGAGTAATCTTCTTTGATCCTTT 58.827 36.000 0.00 0.00 0.00 3.11
116 117 7.327975 TGCGAGTAATCTTCTTTGATCCTTTA 58.672 34.615 0.00 0.00 0.00 1.85
117 118 7.987458 TGCGAGTAATCTTCTTTGATCCTTTAT 59.013 33.333 0.00 0.00 0.00 1.40
118 119 8.831550 GCGAGTAATCTTCTTTGATCCTTTATT 58.168 33.333 0.00 0.00 0.00 1.40
123 124 8.899887 AATCTTCTTTGATCCTTTATTTGGGA 57.100 30.769 0.00 0.00 35.96 4.37
124 125 9.498039 AATCTTCTTTGATCCTTTATTTGGGAT 57.502 29.630 0.00 0.00 44.11 3.85
125 126 8.297470 TCTTCTTTGATCCTTTATTTGGGATG 57.703 34.615 0.00 0.00 41.81 3.51
126 127 7.342799 TCTTCTTTGATCCTTTATTTGGGATGG 59.657 37.037 0.00 0.00 41.81 3.51
127 128 6.740693 TCTTTGATCCTTTATTTGGGATGGA 58.259 36.000 0.00 0.00 41.81 3.41
128 129 7.188381 TCTTTGATCCTTTATTTGGGATGGAA 58.812 34.615 0.00 0.00 41.81 3.53
129 130 6.790232 TTGATCCTTTATTTGGGATGGAAC 57.210 37.500 0.00 0.00 41.81 3.62
130 131 6.091076 TGATCCTTTATTTGGGATGGAACT 57.909 37.500 0.00 0.00 41.81 3.01
131 132 5.893255 TGATCCTTTATTTGGGATGGAACTG 59.107 40.000 0.00 0.00 41.81 3.16
132 133 5.269554 TCCTTTATTTGGGATGGAACTGT 57.730 39.130 0.00 0.00 0.00 3.55
133 134 5.016173 TCCTTTATTTGGGATGGAACTGTG 58.984 41.667 0.00 0.00 0.00 3.66
134 135 4.381932 CCTTTATTTGGGATGGAACTGTGC 60.382 45.833 0.00 0.00 0.00 4.57
135 136 2.307496 ATTTGGGATGGAACTGTGCA 57.693 45.000 0.00 0.00 0.00 4.57
136 137 2.307496 TTTGGGATGGAACTGTGCAT 57.693 45.000 0.00 0.00 38.74 3.96
137 138 1.548081 TTGGGATGGAACTGTGCATG 58.452 50.000 0.00 0.00 35.67 4.06
138 139 0.323633 TGGGATGGAACTGTGCATGG 60.324 55.000 0.00 0.00 35.67 3.66
139 140 1.669999 GGGATGGAACTGTGCATGGC 61.670 60.000 0.00 0.00 35.67 4.40
140 141 1.430632 GATGGAACTGTGCATGGCG 59.569 57.895 0.00 0.00 35.67 5.69
141 142 1.002257 ATGGAACTGTGCATGGCGA 60.002 52.632 0.00 0.00 33.98 5.54
142 143 0.394762 ATGGAACTGTGCATGGCGAT 60.395 50.000 0.00 0.00 33.98 4.58
143 144 1.307355 TGGAACTGTGCATGGCGATG 61.307 55.000 4.04 4.04 0.00 3.84
222 223 5.012664 TCCAGGTGCTTATTTGTTCTCTGTA 59.987 40.000 0.00 0.00 0.00 2.74
227 228 7.448469 AGGTGCTTATTTGTTCTCTGTAACAAT 59.552 33.333 10.32 5.76 45.91 2.71
425 430 6.997655 AGATACTCATCACTTGTTTCACAGA 58.002 36.000 0.00 0.00 33.21 3.41
622 627 6.301169 AGATGTACTTCCGATTTTCCTCTT 57.699 37.500 5.19 0.00 0.00 2.85
623 628 6.342111 AGATGTACTTCCGATTTTCCTCTTC 58.658 40.000 5.19 0.00 0.00 2.87
624 629 5.740290 TGTACTTCCGATTTTCCTCTTCT 57.260 39.130 0.00 0.00 0.00 2.85
628 634 4.530946 ACTTCCGATTTTCCTCTTCTACCA 59.469 41.667 0.00 0.00 0.00 3.25
843 1067 1.106285 GATTGCACCCTAGCCTTTGG 58.894 55.000 0.00 0.00 0.00 3.28
844 1068 0.409484 ATTGCACCCTAGCCTTTGGT 59.591 50.000 0.00 0.00 0.00 3.67
846 1070 4.002797 CACCCTAGCCTTTGGTGC 57.997 61.111 2.64 0.00 42.71 5.01
847 1071 1.074775 CACCCTAGCCTTTGGTGCA 59.925 57.895 2.64 0.00 42.71 4.57
848 1072 0.323725 CACCCTAGCCTTTGGTGCAT 60.324 55.000 2.64 0.00 42.71 3.96
849 1073 1.064758 CACCCTAGCCTTTGGTGCATA 60.065 52.381 2.64 0.00 42.71 3.14
850 1074 1.064685 ACCCTAGCCTTTGGTGCATAC 60.065 52.381 0.00 0.00 0.00 2.39
851 1075 1.064758 CCCTAGCCTTTGGTGCATACA 60.065 52.381 0.00 0.00 0.00 2.29
852 1076 2.292267 CCTAGCCTTTGGTGCATACAG 58.708 52.381 0.00 0.00 0.00 2.74
853 1077 2.356125 CCTAGCCTTTGGTGCATACAGT 60.356 50.000 0.00 0.00 0.00 3.55
854 1078 3.118408 CCTAGCCTTTGGTGCATACAGTA 60.118 47.826 0.00 0.00 0.00 2.74
855 1079 3.652057 AGCCTTTGGTGCATACAGTAT 57.348 42.857 0.00 0.00 0.00 2.12
856 1080 3.282021 AGCCTTTGGTGCATACAGTATG 58.718 45.455 15.39 15.39 46.00 2.39
868 1092 4.569943 CATACAGTATGCACCCAGTATCC 58.430 47.826 7.65 0.00 42.53 2.59
869 1093 1.768870 ACAGTATGCACCCAGTATCCC 59.231 52.381 0.00 0.00 42.53 3.85
870 1094 1.072331 CAGTATGCACCCAGTATCCCC 59.928 57.143 0.00 0.00 0.00 4.81
871 1095 1.061346 AGTATGCACCCAGTATCCCCT 60.061 52.381 0.00 0.00 0.00 4.79
872 1096 2.181419 AGTATGCACCCAGTATCCCCTA 59.819 50.000 0.00 0.00 0.00 3.53
873 1097 1.734655 ATGCACCCAGTATCCCCTAG 58.265 55.000 0.00 0.00 0.00 3.02
874 1098 0.399949 TGCACCCAGTATCCCCTAGG 60.400 60.000 0.06 0.06 0.00 3.02
1026 1552 4.699522 AAACGTGGGAGGAGCCGC 62.700 66.667 0.00 0.00 37.63 6.53
1109 1641 6.184068 ACTCAGCTCTACAGAATGACTCTAA 58.816 40.000 0.00 0.00 39.69 2.10
1142 1674 2.426024 CAGGCAGAGGTCATGAATTTGG 59.574 50.000 0.00 0.00 0.00 3.28
1762 2313 1.436195 TTCTGAACACACCGCTGCAC 61.436 55.000 0.00 0.00 0.00 4.57
1863 2414 5.352569 AGACGAAACCATGAATGATCTGAAC 59.647 40.000 0.00 0.00 0.00 3.18
1877 2428 1.742831 TCTGAACGCTGCAAAAGTTGT 59.257 42.857 0.00 0.00 0.00 3.32
2459 3195 3.932710 CGAATCTGTTTTCTGATCGGGAA 59.067 43.478 0.62 0.00 37.47 3.97
2561 3309 4.023707 GCTGAGCAACAACAATTACTCTGT 60.024 41.667 0.00 0.00 0.00 3.41
2687 3435 2.204151 CAAGGGGGAGGGTCCAGT 60.204 66.667 0.00 0.00 38.64 4.00
2841 3589 5.939764 AGATCTGAAGTGCCTGTTATGTA 57.060 39.130 0.00 0.00 0.00 2.29
2902 3650 6.258507 GGAAATTTGACTGTCAGTTTTGCATT 59.741 34.615 22.17 9.24 0.00 3.56
2923 3671 6.640907 GCATTAAAAACTGTAGAAGTGGGTTG 59.359 38.462 0.00 0.00 39.81 3.77
3003 3751 0.392998 CTGGCATAACTTGTCGCCCT 60.393 55.000 0.00 0.00 44.22 5.19
3056 3804 3.860754 GCTTGCCCTTTGACCATAAACAC 60.861 47.826 0.00 0.00 0.00 3.32
3062 3810 3.813166 CCTTTGACCATAAACACGACAGT 59.187 43.478 0.00 0.00 0.00 3.55
3074 3822 2.852748 CACGACAGTGTGTACTAGAGC 58.147 52.381 0.00 0.00 43.15 4.09
3075 3823 2.225727 CACGACAGTGTGTACTAGAGCA 59.774 50.000 0.00 0.00 43.15 4.26
3076 3824 3.082548 ACGACAGTGTGTACTAGAGCAT 58.917 45.455 0.00 0.00 34.74 3.79
3078 3826 7.101330 CACGACAGTGTGTACTAGAGCATCT 62.101 48.000 0.00 0.00 45.75 2.90
3095 3843 4.508461 CATCTCCAACAGTTGATGCAAA 57.492 40.909 15.36 0.00 31.51 3.68
3096 3844 4.873817 CATCTCCAACAGTTGATGCAAAA 58.126 39.130 15.36 0.00 31.51 2.44
3098 3846 6.623486 CATCTCCAACAGTTGATGCAAAATA 58.377 36.000 15.36 0.00 31.51 1.40
3099 3847 6.258230 TCTCCAACAGTTGATGCAAAATAG 57.742 37.500 15.36 0.00 0.00 1.73
3100 3848 5.183713 TCTCCAACAGTTGATGCAAAATAGG 59.816 40.000 15.36 0.00 0.00 2.57
3101 3849 4.220382 TCCAACAGTTGATGCAAAATAGGG 59.780 41.667 15.36 0.00 0.00 3.53
3102 3850 3.874392 ACAGTTGATGCAAAATAGGGC 57.126 42.857 0.00 0.00 0.00 5.19
3103 3851 3.164268 ACAGTTGATGCAAAATAGGGCA 58.836 40.909 0.00 0.00 45.23 5.36
3132 3974 3.979101 AAAAAGGCAGGAGAGAGAGAG 57.021 47.619 0.00 0.00 0.00 3.20
3134 3976 2.442236 AAGGCAGGAGAGAGAGAGAG 57.558 55.000 0.00 0.00 0.00 3.20
3135 3977 1.595311 AGGCAGGAGAGAGAGAGAGA 58.405 55.000 0.00 0.00 0.00 3.10
3136 3978 1.492176 AGGCAGGAGAGAGAGAGAGAG 59.508 57.143 0.00 0.00 0.00 3.20
3137 3979 1.490490 GGCAGGAGAGAGAGAGAGAGA 59.510 57.143 0.00 0.00 0.00 3.10
3139 3981 3.209410 GCAGGAGAGAGAGAGAGAGAAG 58.791 54.545 0.00 0.00 0.00 2.85
3140 3982 3.813443 CAGGAGAGAGAGAGAGAGAAGG 58.187 54.545 0.00 0.00 0.00 3.46
3142 3984 3.852578 AGGAGAGAGAGAGAGAGAAGGTT 59.147 47.826 0.00 0.00 0.00 3.50
3143 3985 4.292306 AGGAGAGAGAGAGAGAGAAGGTTT 59.708 45.833 0.00 0.00 0.00 3.27
3144 3986 5.016831 GGAGAGAGAGAGAGAGAAGGTTTT 58.983 45.833 0.00 0.00 0.00 2.43
3145 3987 6.011981 AGGAGAGAGAGAGAGAGAAGGTTTTA 60.012 42.308 0.00 0.00 0.00 1.52
3146 3988 6.318900 GGAGAGAGAGAGAGAGAAGGTTTTAG 59.681 46.154 0.00 0.00 0.00 1.85
3147 3989 6.187682 AGAGAGAGAGAGAGAAGGTTTTAGG 58.812 44.000 0.00 0.00 0.00 2.69
3149 3991 5.949952 AGAGAGAGAGAGAAGGTTTTAGGTC 59.050 44.000 0.00 0.00 0.00 3.85
3150 3992 5.646215 AGAGAGAGAGAAGGTTTTAGGTCA 58.354 41.667 0.00 0.00 0.00 4.02
3152 3994 6.379988 AGAGAGAGAGAAGGTTTTAGGTCATC 59.620 42.308 0.00 0.00 0.00 2.92
3154 3996 6.154363 AGAGAGAGAAGGTTTTAGGTCATCTG 59.846 42.308 0.00 0.00 0.00 2.90
3155 3997 6.019748 AGAGAGAAGGTTTTAGGTCATCTGA 58.980 40.000 0.00 0.00 0.00 3.27
3160 4002 8.712228 AGAAGGTTTTAGGTCATCTGAAAATT 57.288 30.769 0.00 0.00 33.60 1.82
3163 4005 9.764363 AAGGTTTTAGGTCATCTGAAAATTTTC 57.236 29.630 21.60 21.60 33.60 2.29
3164 4006 9.147732 AGGTTTTAGGTCATCTGAAAATTTTCT 57.852 29.630 26.73 8.61 38.02 2.52
3165 4007 9.196552 GGTTTTAGGTCATCTGAAAATTTTCTG 57.803 33.333 26.73 25.45 38.02 3.02
3166 4008 8.703336 GTTTTAGGTCATCTGAAAATTTTCTGC 58.297 33.333 26.73 15.18 38.02 4.26
3167 4009 5.397142 AGGTCATCTGAAAATTTTCTGCC 57.603 39.130 26.73 21.29 38.02 4.85
3171 4013 7.178983 AGGTCATCTGAAAATTTTCTGCCATAA 59.821 33.333 26.73 13.37 38.02 1.90
3173 4015 7.814107 GTCATCTGAAAATTTTCTGCCATAACA 59.186 33.333 26.73 12.20 38.02 2.41
3174 4016 8.533657 TCATCTGAAAATTTTCTGCCATAACAT 58.466 29.630 26.73 13.60 38.02 2.71
3175 4017 9.158233 CATCTGAAAATTTTCTGCCATAACATT 57.842 29.630 26.73 5.75 38.02 2.71
3176 4018 9.729281 ATCTGAAAATTTTCTGCCATAACATTT 57.271 25.926 26.73 4.59 38.02 2.32
3177 4019 9.558396 TCTGAAAATTTTCTGCCATAACATTTT 57.442 25.926 26.73 0.88 38.02 1.82
3179 4021 9.558396 TGAAAATTTTCTGCCATAACATTTTCT 57.442 25.926 26.73 0.00 38.82 2.52
3180 4022 9.815936 GAAAATTTTCTGCCATAACATTTTCTG 57.184 29.630 21.21 0.00 36.71 3.02
3181 4023 9.558396 AAAATTTTCTGCCATAACATTTTCTGA 57.442 25.926 0.00 0.00 0.00 3.27
3182 4024 8.538409 AATTTTCTGCCATAACATTTTCTGAC 57.462 30.769 0.00 0.00 0.00 3.51
3183 4025 4.944962 TCTGCCATAACATTTTCTGACG 57.055 40.909 0.00 0.00 0.00 4.35
3184 4026 4.574892 TCTGCCATAACATTTTCTGACGA 58.425 39.130 0.00 0.00 0.00 4.20
3185 4027 5.000591 TCTGCCATAACATTTTCTGACGAA 58.999 37.500 0.00 0.00 0.00 3.85
3187 4029 4.083003 TGCCATAACATTTTCTGACGAACC 60.083 41.667 0.00 0.00 0.00 3.62
3188 4030 4.083003 GCCATAACATTTTCTGACGAACCA 60.083 41.667 0.00 0.00 0.00 3.67
3189 4031 5.563867 GCCATAACATTTTCTGACGAACCAA 60.564 40.000 0.00 0.00 0.00 3.67
3191 4033 7.090173 CCATAACATTTTCTGACGAACCAAAT 58.910 34.615 0.00 0.00 0.00 2.32
3192 4034 7.273381 CCATAACATTTTCTGACGAACCAAATC 59.727 37.037 0.00 0.00 0.00 2.17
3193 4035 6.391227 AACATTTTCTGACGAACCAAATCT 57.609 33.333 0.00 0.00 0.00 2.40
3194 4036 6.391227 ACATTTTCTGACGAACCAAATCTT 57.609 33.333 0.00 0.00 0.00 2.40
3195 4037 6.805713 ACATTTTCTGACGAACCAAATCTTT 58.194 32.000 0.00 0.00 0.00 2.52
3196 4038 6.918022 ACATTTTCTGACGAACCAAATCTTTC 59.082 34.615 0.00 0.00 0.00 2.62
3197 4039 6.443934 TTTTCTGACGAACCAAATCTTTCA 57.556 33.333 0.00 0.00 0.00 2.69
3198 4040 6.443934 TTTCTGACGAACCAAATCTTTCAA 57.556 33.333 0.00 0.00 0.00 2.69
3199 4041 6.443934 TTCTGACGAACCAAATCTTTCAAA 57.556 33.333 0.00 0.00 0.00 2.69
3200 4042 6.633500 TCTGACGAACCAAATCTTTCAAAT 57.367 33.333 0.00 0.00 0.00 2.32
3201 4043 7.038154 TCTGACGAACCAAATCTTTCAAATT 57.962 32.000 0.00 0.00 0.00 1.82
3202 4044 6.917477 TCTGACGAACCAAATCTTTCAAATTG 59.083 34.615 0.00 0.00 0.00 2.32
3203 4045 6.568869 TGACGAACCAAATCTTTCAAATTGT 58.431 32.000 0.00 0.00 0.00 2.71
3204 4046 7.708051 TGACGAACCAAATCTTTCAAATTGTA 58.292 30.769 0.00 0.00 0.00 2.41
3205 4047 7.646130 TGACGAACCAAATCTTTCAAATTGTAC 59.354 33.333 0.00 0.00 0.00 2.90
3206 4048 7.484975 ACGAACCAAATCTTTCAAATTGTACA 58.515 30.769 0.00 0.00 0.00 2.90
3207 4049 8.141268 ACGAACCAAATCTTTCAAATTGTACAT 58.859 29.630 0.00 0.00 0.00 2.29
3208 4050 8.427012 CGAACCAAATCTTTCAAATTGTACATG 58.573 33.333 0.00 0.00 0.00 3.21
3209 4051 9.260002 GAACCAAATCTTTCAAATTGTACATGT 57.740 29.630 2.69 2.69 0.00 3.21
3210 4052 8.592105 ACCAAATCTTTCAAATTGTACATGTG 57.408 30.769 9.11 0.00 0.00 3.21
3211 4053 8.420222 ACCAAATCTTTCAAATTGTACATGTGA 58.580 29.630 9.11 0.00 0.00 3.58
3212 4054 9.426837 CCAAATCTTTCAAATTGTACATGTGAT 57.573 29.630 9.11 0.00 0.00 3.06
3222 4064 9.726232 CAAATTGTACATGTGATAGAATCTTGG 57.274 33.333 9.11 0.00 0.00 3.61
3223 4065 9.466497 AAATTGTACATGTGATAGAATCTTGGT 57.534 29.630 9.11 0.00 0.00 3.67
3225 4067 9.770097 ATTGTACATGTGATAGAATCTTGGTAG 57.230 33.333 9.11 0.00 0.00 3.18
3226 4068 8.306313 TGTACATGTGATAGAATCTTGGTAGT 57.694 34.615 9.11 0.00 0.00 2.73
3227 4069 8.197439 TGTACATGTGATAGAATCTTGGTAGTG 58.803 37.037 9.11 0.00 0.00 2.74
3228 4070 7.423844 ACATGTGATAGAATCTTGGTAGTGA 57.576 36.000 0.00 0.00 0.00 3.41
3229 4071 8.027524 ACATGTGATAGAATCTTGGTAGTGAT 57.972 34.615 0.00 0.00 0.00 3.06
3230 4072 9.147732 ACATGTGATAGAATCTTGGTAGTGATA 57.852 33.333 0.00 0.00 0.00 2.15
3231 4073 9.987272 CATGTGATAGAATCTTGGTAGTGATAA 57.013 33.333 0.00 0.00 0.00 1.75
3244 4086 9.224267 CTTGGTAGTGATAAAGATATCCATTGG 57.776 37.037 0.00 0.00 37.68 3.16
3245 4087 7.168219 TGGTAGTGATAAAGATATCCATTGGC 58.832 38.462 0.00 0.00 37.68 4.52
3246 4088 7.017551 TGGTAGTGATAAAGATATCCATTGGCT 59.982 37.037 0.00 0.00 37.68 4.75
3247 4089 8.540388 GGTAGTGATAAAGATATCCATTGGCTA 58.460 37.037 0.00 0.00 37.68 3.93
3248 4090 9.944376 GTAGTGATAAAGATATCCATTGGCTAA 57.056 33.333 0.00 0.00 37.68 3.09
3257 4099 9.823647 AAGATATCCATTGGCTAATAATACTCG 57.176 33.333 0.00 0.00 0.00 4.18
3258 4100 9.201989 AGATATCCATTGGCTAATAATACTCGA 57.798 33.333 0.00 0.00 0.00 4.04
3261 4103 7.905604 TCCATTGGCTAATAATACTCGAATG 57.094 36.000 0.00 0.00 0.00 2.67
3263 4105 7.387673 TCCATTGGCTAATAATACTCGAATGTG 59.612 37.037 0.00 0.00 0.00 3.21
3265 4107 7.709269 TTGGCTAATAATACTCGAATGTGTC 57.291 36.000 0.00 0.00 0.00 3.67
3267 4109 6.700081 TGGCTAATAATACTCGAATGTGTCAC 59.300 38.462 0.00 0.00 0.00 3.67
3270 4112 8.428536 GCTAATAATACTCGAATGTGTCACATC 58.571 37.037 18.66 11.12 37.97 3.06
3272 4114 8.581057 AATAATACTCGAATGTGTCACATCTC 57.419 34.615 18.66 15.61 37.97 2.75
3275 4117 4.987832 ACTCGAATGTGTCACATCTCTAC 58.012 43.478 18.66 7.66 37.97 2.59
3277 4119 3.761752 TCGAATGTGTCACATCTCTACCA 59.238 43.478 18.66 0.00 37.97 3.25
3278 4120 4.402474 TCGAATGTGTCACATCTCTACCAT 59.598 41.667 18.66 0.56 37.97 3.55
3279 4121 4.742167 CGAATGTGTCACATCTCTACCATC 59.258 45.833 18.66 9.03 37.97 3.51
3281 4123 2.427095 TGTGTCACATCTCTACCATCGG 59.573 50.000 0.18 0.00 0.00 4.18
3299 4141 4.764679 TCGGATTGGTTTCATTCAACAG 57.235 40.909 0.00 0.00 0.00 3.16
3300 4142 4.141287 TCGGATTGGTTTCATTCAACAGT 58.859 39.130 0.00 0.00 0.00 3.55
3303 4145 6.263392 TCGGATTGGTTTCATTCAACAGTAAA 59.737 34.615 0.00 0.00 0.00 2.01
3304 4146 7.040062 TCGGATTGGTTTCATTCAACAGTAAAT 60.040 33.333 0.00 0.00 0.00 1.40
3322 4634 9.846248 ACAGTAAATATTCAAAGTCATTCAAGC 57.154 29.630 0.00 0.00 0.00 4.01
3331 4785 5.635280 TCAAAGTCATTCAAGCGACTAAGAG 59.365 40.000 0.00 0.00 41.60 2.85
3336 4790 5.578727 GTCATTCAAGCGACTAAGAGAATGT 59.421 40.000 11.33 0.00 41.65 2.71
3344 4798 4.344448 CGACTAAGAGAATGTCGTCTTCC 58.656 47.826 6.59 0.00 45.54 3.46
3349 4803 3.025262 AGAGAATGTCGTCTTCCCTACC 58.975 50.000 0.00 0.00 0.00 3.18
3359 4813 3.006110 CGTCTTCCCTACCACTGTAAACA 59.994 47.826 0.00 0.00 0.00 2.83
3366 4820 2.729028 ACCACTGTAAACAACTGCCT 57.271 45.000 0.00 0.00 0.00 4.75
3367 4821 3.012934 ACCACTGTAAACAACTGCCTT 57.987 42.857 0.00 0.00 0.00 4.35
3390 4844 9.474920 CCTTGAGCAAATTCTTGTTTACAATAA 57.525 29.630 0.00 0.00 35.02 1.40
3407 4861 6.254281 ACAATAACTACATGCAAGTTGACC 57.746 37.500 19.31 0.00 37.71 4.02
3421 4875 6.046885 CAAGTTGACCGAATTTGCAATTTT 57.953 33.333 0.00 0.00 0.00 1.82
3423 4877 4.511082 AGTTGACCGAATTTGCAATTTTGG 59.489 37.500 27.70 27.70 33.31 3.28
3433 4887 8.920665 CGAATTTGCAATTTTGGTAAGTTGATA 58.079 29.630 0.00 0.00 34.03 2.15
3437 4891 7.593875 TGCAATTTTGGTAAGTTGATATTGC 57.406 32.000 0.00 0.00 44.04 3.56
3445 4899 4.985409 GGTAAGTTGATATTGCGAGAGGAG 59.015 45.833 0.00 0.00 0.00 3.69
3449 4903 4.346418 AGTTGATATTGCGAGAGGAGGAAT 59.654 41.667 0.00 0.00 34.16 3.01
3450 4904 4.263018 TGATATTGCGAGAGGAGGAATG 57.737 45.455 0.00 0.00 32.09 2.67
3452 4906 1.207791 ATTGCGAGAGGAGGAATGGT 58.792 50.000 0.00 0.00 0.00 3.55
3457 4926 1.137872 CGAGAGGAGGAATGGTTGGAG 59.862 57.143 0.00 0.00 0.00 3.86
3458 4927 1.488393 GAGAGGAGGAATGGTTGGAGG 59.512 57.143 0.00 0.00 0.00 4.30
3470 4939 4.086706 TGGTTGGAGGAAGAAGAAAGAC 57.913 45.455 0.00 0.00 0.00 3.01
3475 4944 2.299297 GGAGGAAGAAGAAAGACGGACA 59.701 50.000 0.00 0.00 0.00 4.02
3476 4945 3.055747 GGAGGAAGAAGAAAGACGGACAT 60.056 47.826 0.00 0.00 0.00 3.06
3478 4947 3.055747 AGGAAGAAGAAAGACGGACATCC 60.056 47.826 0.00 0.00 0.00 3.51
3479 4948 3.306780 GGAAGAAGAAAGACGGACATCCA 60.307 47.826 0.00 0.00 35.14 3.41
3483 4952 2.991250 AGAAAGACGGACATCCATTGG 58.009 47.619 0.00 0.00 35.14 3.16
3484 4953 2.305927 AGAAAGACGGACATCCATTGGT 59.694 45.455 1.86 0.00 35.14 3.67
3491 4960 4.007659 ACGGACATCCATTGGTTCTTAAC 58.992 43.478 1.86 0.00 35.14 2.01
3494 4963 5.016831 GGACATCCATTGGTTCTTAACCTT 58.983 41.667 10.03 0.00 43.31 3.50
3497 4966 7.996644 GGACATCCATTGGTTCTTAACCTTATA 59.003 37.037 10.03 0.00 43.31 0.98
3509 4979 8.967918 GTTCTTAACCTTATAGCCCAGAAAATT 58.032 33.333 0.00 0.00 0.00 1.82
3515 4985 7.639378 ACCTTATAGCCCAGAAAATTGACTTA 58.361 34.615 0.00 0.00 0.00 2.24
3517 4987 8.406297 CCTTATAGCCCAGAAAATTGACTTAAC 58.594 37.037 0.00 0.00 0.00 2.01
3519 4989 4.479158 AGCCCAGAAAATTGACTTAACCA 58.521 39.130 0.00 0.00 0.00 3.67
3523 4993 6.018262 GCCCAGAAAATTGACTTAACCAAAAC 60.018 38.462 0.00 0.00 0.00 2.43
3524 4994 7.044798 CCCAGAAAATTGACTTAACCAAAACA 58.955 34.615 0.00 0.00 0.00 2.83
3535 5005 9.712305 TGACTTAACCAAAACAAAATTTTCAGA 57.288 25.926 0.00 0.00 0.00 3.27
3537 5007 8.941977 ACTTAACCAAAACAAAATTTTCAGACC 58.058 29.630 0.00 0.00 0.00 3.85
3543 5014 8.387354 CCAAAACAAAATTTTCAGACCACTTAC 58.613 33.333 0.00 0.00 0.00 2.34
3544 5015 8.930760 CAAAACAAAATTTTCAGACCACTTACA 58.069 29.630 0.00 0.00 0.00 2.41
3545 5016 9.665719 AAAACAAAATTTTCAGACCACTTACAT 57.334 25.926 0.00 0.00 0.00 2.29
3553 5024 3.572682 TCAGACCACTTACATATAGCCGG 59.427 47.826 0.00 0.00 0.00 6.13
3554 5025 2.299297 AGACCACTTACATATAGCCGGC 59.701 50.000 21.89 21.89 0.00 6.13
3555 5026 1.346722 ACCACTTACATATAGCCGGCC 59.653 52.381 26.15 5.07 0.00 6.13
3556 5027 1.338769 CCACTTACATATAGCCGGCCC 60.339 57.143 26.15 0.00 0.00 5.80
3557 5028 1.623811 CACTTACATATAGCCGGCCCT 59.376 52.381 26.15 13.81 0.00 5.19
3558 5029 2.038557 CACTTACATATAGCCGGCCCTT 59.961 50.000 26.15 11.04 0.00 3.95
3559 5030 2.709397 ACTTACATATAGCCGGCCCTTT 59.291 45.455 26.15 7.06 0.00 3.11
3560 5031 3.137728 ACTTACATATAGCCGGCCCTTTT 59.862 43.478 26.15 6.59 0.00 2.27
3561 5032 2.748209 ACATATAGCCGGCCCTTTTT 57.252 45.000 26.15 5.68 0.00 1.94
3562 5033 2.583143 ACATATAGCCGGCCCTTTTTC 58.417 47.619 26.15 0.00 0.00 2.29
3563 5034 2.174854 ACATATAGCCGGCCCTTTTTCT 59.825 45.455 26.15 3.86 0.00 2.52
3564 5035 2.341846 TATAGCCGGCCCTTTTTCTG 57.658 50.000 26.15 0.00 0.00 3.02
3565 5036 0.623723 ATAGCCGGCCCTTTTTCTGA 59.376 50.000 26.15 0.00 0.00 3.27
3566 5037 0.402504 TAGCCGGCCCTTTTTCTGAA 59.597 50.000 26.15 0.00 0.00 3.02
3567 5038 0.895559 AGCCGGCCCTTTTTCTGAAG 60.896 55.000 26.15 0.00 0.00 3.02
3568 5039 1.586541 CCGGCCCTTTTTCTGAAGC 59.413 57.895 0.00 0.00 0.00 3.86
3569 5040 1.586541 CGGCCCTTTTTCTGAAGCC 59.413 57.895 0.00 7.37 37.03 4.35
3570 5041 1.178534 CGGCCCTTTTTCTGAAGCCA 61.179 55.000 15.25 0.00 40.49 4.75
3571 5042 0.605083 GGCCCTTTTTCTGAAGCCAG 59.395 55.000 11.45 0.00 40.20 4.85
3572 5043 1.620822 GCCCTTTTTCTGAAGCCAGA 58.379 50.000 0.00 0.00 46.95 3.86
3589 5060 4.238761 CCAGATGGCATAAGCAAAGATG 57.761 45.455 0.00 0.00 44.61 2.90
3603 5074 2.950309 CAAAGATGCTGAGGAGGAATGG 59.050 50.000 0.00 0.00 0.00 3.16
3604 5075 0.473326 AGATGCTGAGGAGGAATGGC 59.527 55.000 0.00 0.00 0.00 4.40
3605 5076 0.182061 GATGCTGAGGAGGAATGGCA 59.818 55.000 0.00 0.00 0.00 4.92
3606 5077 0.183014 ATGCTGAGGAGGAATGGCAG 59.817 55.000 0.00 0.00 33.23 4.85
3607 5078 1.823041 GCTGAGGAGGAATGGCAGC 60.823 63.158 0.00 0.00 44.11 5.25
3608 5079 1.523258 CTGAGGAGGAATGGCAGCG 60.523 63.158 0.00 0.00 0.00 5.18
3629 5100 5.358725 AGCGTTTGAAAGGAAGGAAAACTAA 59.641 36.000 1.30 0.00 0.00 2.24
3632 5103 6.577427 CGTTTGAAAGGAAGGAAAACTAATCG 59.423 38.462 0.00 0.00 0.00 3.34
3633 5104 6.569179 TTGAAAGGAAGGAAAACTAATCGG 57.431 37.500 0.00 0.00 0.00 4.18
3636 5107 4.652679 AGGAAGGAAAACTAATCGGGTT 57.347 40.909 0.00 0.00 0.00 4.11
3639 5110 4.330894 GGAAGGAAAACTAATCGGGTTACG 59.669 45.833 0.00 0.00 46.11 3.18
3649 5120 4.296265 GGGTTACGAGGCCAACAG 57.704 61.111 5.01 0.00 0.00 3.16
3650 5121 1.373812 GGGTTACGAGGCCAACAGT 59.626 57.895 5.01 1.06 0.00 3.55
3651 5122 0.250597 GGGTTACGAGGCCAACAGTT 60.251 55.000 5.01 0.00 0.00 3.16
3654 5125 1.529865 GTTACGAGGCCAACAGTTGAC 59.470 52.381 15.36 2.45 0.00 3.18
3659 5130 4.025401 GCCAACAGTTGACGGCCG 62.025 66.667 26.86 26.86 38.67 6.13
3660 5131 2.590575 CCAACAGTTGACGGCCGT 60.591 61.111 34.89 34.89 0.00 5.68
3662 5133 1.594293 CAACAGTTGACGGCCGTCT 60.594 57.895 46.72 31.50 44.80 4.18
3663 5134 0.319211 CAACAGTTGACGGCCGTCTA 60.319 55.000 46.72 40.54 44.80 2.59
3664 5135 0.390124 AACAGTTGACGGCCGTCTAA 59.610 50.000 46.72 36.64 44.80 2.10
3666 5137 1.278238 CAGTTGACGGCCGTCTAATC 58.722 55.000 46.72 34.01 44.80 1.75
3688 5768 0.166814 AGCAAACGCGCTTGATTCTC 59.833 50.000 25.27 7.49 39.99 2.87
3702 5782 0.173708 ATTCTCTTGTCGGCCGTCTC 59.826 55.000 27.15 16.95 0.00 3.36
3703 5783 1.874345 TTCTCTTGTCGGCCGTCTCC 61.874 60.000 27.15 12.22 0.00 3.71
3704 5784 3.358076 CTCTTGTCGGCCGTCTCCC 62.358 68.421 27.15 9.64 0.00 4.30
3705 5785 4.796231 CTTGTCGGCCGTCTCCCG 62.796 72.222 27.15 6.28 46.88 5.14
3734 5814 4.272100 GCTTACGCGGTCCAAAGA 57.728 55.556 12.47 0.00 0.00 2.52
3735 5815 2.763651 GCTTACGCGGTCCAAAGAT 58.236 52.632 12.47 0.00 0.00 2.40
3794 5877 1.581447 GCTGCTTCTTCCCCGTTTG 59.419 57.895 0.00 0.00 0.00 2.93
3796 5879 1.826385 CTGCTTCTTCCCCGTTTGAT 58.174 50.000 0.00 0.00 0.00 2.57
3797 5880 1.740025 CTGCTTCTTCCCCGTTTGATC 59.260 52.381 0.00 0.00 0.00 2.92
3803 5886 0.326927 TTCCCCGTTTGATCACTCCC 59.673 55.000 0.00 0.00 0.00 4.30
3885 5971 1.886542 GGAATTTCGCTGGGTGAGTTT 59.113 47.619 0.00 0.00 0.00 2.66
3894 5980 3.181520 CGCTGGGTGAGTTTTTAGATTCG 60.182 47.826 0.00 0.00 0.00 3.34
3900 5986 3.678548 GTGAGTTTTTAGATTCGTCGCCT 59.321 43.478 0.00 0.00 0.00 5.52
3922 6008 6.402222 CCTATAAGATCTTACCATGCTCACC 58.598 44.000 17.35 0.00 0.00 4.02
3935 6021 2.706890 TGCTCACCCCGTCTTTTTATC 58.293 47.619 0.00 0.00 0.00 1.75
3936 6022 2.304761 TGCTCACCCCGTCTTTTTATCT 59.695 45.455 0.00 0.00 0.00 1.98
3937 6023 3.516300 TGCTCACCCCGTCTTTTTATCTA 59.484 43.478 0.00 0.00 0.00 1.98
3938 6024 4.120589 GCTCACCCCGTCTTTTTATCTAG 58.879 47.826 0.00 0.00 0.00 2.43
3939 6025 4.382793 GCTCACCCCGTCTTTTTATCTAGT 60.383 45.833 0.00 0.00 0.00 2.57
3940 6026 5.334724 TCACCCCGTCTTTTTATCTAGTC 57.665 43.478 0.00 0.00 0.00 2.59
3941 6027 5.021458 TCACCCCGTCTTTTTATCTAGTCT 58.979 41.667 0.00 0.00 0.00 3.24
3942 6028 6.189859 TCACCCCGTCTTTTTATCTAGTCTA 58.810 40.000 0.00 0.00 0.00 2.59
3943 6029 6.320672 TCACCCCGTCTTTTTATCTAGTCTAG 59.679 42.308 0.00 0.00 0.00 2.43
3944 6030 6.096564 CACCCCGTCTTTTTATCTAGTCTAGT 59.903 42.308 6.77 0.00 0.00 2.57
3977 6063 5.519206 ACATATTTTTCTCGCTTCCGTAGTC 59.481 40.000 0.00 0.00 35.54 2.59
4025 6111 4.527038 AGCTAGCTACCTGCCGATTTTATA 59.473 41.667 17.69 0.00 44.23 0.98
4035 6121 2.286833 GCCGATTTTATAGTCGCTTGCA 59.713 45.455 0.00 0.00 36.57 4.08
4037 6123 3.555956 CCGATTTTATAGTCGCTTGCAGT 59.444 43.478 0.00 0.00 36.57 4.40
4039 6125 5.233476 CCGATTTTATAGTCGCTTGCAGTAA 59.767 40.000 0.00 0.00 36.57 2.24
4069 6156 5.163561 ACTGCAAGAACGAAGGAAATTTTCA 60.164 36.000 11.09 0.00 37.43 2.69
4070 6157 5.280945 TGCAAGAACGAAGGAAATTTTCAG 58.719 37.500 11.09 2.44 0.00 3.02
4071 6158 5.067153 TGCAAGAACGAAGGAAATTTTCAGA 59.933 36.000 11.09 0.00 0.00 3.27
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
80 81 0.109723 TTACTCGCAAACCAAGGGCT 59.890 50.000 0.00 0.00 0.00 5.19
81 82 1.132453 GATTACTCGCAAACCAAGGGC 59.868 52.381 0.00 0.00 0.00 5.19
82 83 2.711542 AGATTACTCGCAAACCAAGGG 58.288 47.619 0.00 0.00 0.00 3.95
83 84 4.003648 AGAAGATTACTCGCAAACCAAGG 58.996 43.478 0.00 0.00 0.00 3.61
84 85 5.613358 AAGAAGATTACTCGCAAACCAAG 57.387 39.130 0.00 0.00 0.00 3.61
85 86 5.529430 TCAAAGAAGATTACTCGCAAACCAA 59.471 36.000 0.00 0.00 0.00 3.67
86 87 5.060506 TCAAAGAAGATTACTCGCAAACCA 58.939 37.500 0.00 0.00 0.00 3.67
87 88 5.607119 TCAAAGAAGATTACTCGCAAACC 57.393 39.130 0.00 0.00 0.00 3.27
88 89 6.092807 AGGATCAAAGAAGATTACTCGCAAAC 59.907 38.462 0.00 0.00 0.00 2.93
89 90 6.173339 AGGATCAAAGAAGATTACTCGCAAA 58.827 36.000 0.00 0.00 0.00 3.68
90 91 5.734720 AGGATCAAAGAAGATTACTCGCAA 58.265 37.500 0.00 0.00 0.00 4.85
91 92 5.344743 AGGATCAAAGAAGATTACTCGCA 57.655 39.130 0.00 0.00 0.00 5.10
92 93 6.670077 AAAGGATCAAAGAAGATTACTCGC 57.330 37.500 0.00 0.00 0.00 5.03
97 98 9.989296 TCCCAAATAAAGGATCAAAGAAGATTA 57.011 29.630 0.00 0.00 0.00 1.75
98 99 8.899887 TCCCAAATAAAGGATCAAAGAAGATT 57.100 30.769 0.00 0.00 0.00 2.40
99 100 8.921205 CATCCCAAATAAAGGATCAAAGAAGAT 58.079 33.333 0.00 0.00 41.05 2.40
100 101 7.342799 CCATCCCAAATAAAGGATCAAAGAAGA 59.657 37.037 0.00 0.00 41.05 2.87
101 102 7.342799 TCCATCCCAAATAAAGGATCAAAGAAG 59.657 37.037 0.00 0.00 41.05 2.85
102 103 7.188381 TCCATCCCAAATAAAGGATCAAAGAA 58.812 34.615 0.00 0.00 41.05 2.52
103 104 6.740693 TCCATCCCAAATAAAGGATCAAAGA 58.259 36.000 0.00 0.00 41.05 2.52
104 105 7.124750 AGTTCCATCCCAAATAAAGGATCAAAG 59.875 37.037 0.00 0.00 41.05 2.77
105 106 6.959366 AGTTCCATCCCAAATAAAGGATCAAA 59.041 34.615 0.00 0.00 41.05 2.69
106 107 6.380846 CAGTTCCATCCCAAATAAAGGATCAA 59.619 38.462 0.00 0.00 41.05 2.57
107 108 5.893255 CAGTTCCATCCCAAATAAAGGATCA 59.107 40.000 0.00 0.00 41.05 2.92
108 109 5.893824 ACAGTTCCATCCCAAATAAAGGATC 59.106 40.000 0.00 0.00 41.05 3.36
109 110 5.658190 CACAGTTCCATCCCAAATAAAGGAT 59.342 40.000 0.00 0.00 43.89 3.24
110 111 5.016173 CACAGTTCCATCCCAAATAAAGGA 58.984 41.667 0.00 0.00 36.36 3.36
111 112 4.381932 GCACAGTTCCATCCCAAATAAAGG 60.382 45.833 0.00 0.00 0.00 3.11
112 113 4.220382 TGCACAGTTCCATCCCAAATAAAG 59.780 41.667 0.00 0.00 0.00 1.85
113 114 4.155709 TGCACAGTTCCATCCCAAATAAA 58.844 39.130 0.00 0.00 0.00 1.40
114 115 3.772387 TGCACAGTTCCATCCCAAATAA 58.228 40.909 0.00 0.00 0.00 1.40
115 116 3.448093 TGCACAGTTCCATCCCAAATA 57.552 42.857 0.00 0.00 0.00 1.40
116 117 2.307496 TGCACAGTTCCATCCCAAAT 57.693 45.000 0.00 0.00 0.00 2.32
117 118 1.894466 CATGCACAGTTCCATCCCAAA 59.106 47.619 0.00 0.00 0.00 3.28
118 119 1.548081 CATGCACAGTTCCATCCCAA 58.452 50.000 0.00 0.00 0.00 4.12
119 120 0.323633 CCATGCACAGTTCCATCCCA 60.324 55.000 0.00 0.00 0.00 4.37
120 121 1.669999 GCCATGCACAGTTCCATCCC 61.670 60.000 0.00 0.00 0.00 3.85
121 122 1.811860 GCCATGCACAGTTCCATCC 59.188 57.895 0.00 0.00 0.00 3.51
122 123 1.026182 TCGCCATGCACAGTTCCATC 61.026 55.000 0.00 0.00 0.00 3.51
123 124 0.394762 ATCGCCATGCACAGTTCCAT 60.395 50.000 0.00 0.00 0.00 3.41
124 125 1.002257 ATCGCCATGCACAGTTCCA 60.002 52.632 0.00 0.00 0.00 3.53
125 126 1.026182 TCATCGCCATGCACAGTTCC 61.026 55.000 0.00 0.00 0.00 3.62
126 127 0.376152 CTCATCGCCATGCACAGTTC 59.624 55.000 0.00 0.00 0.00 3.01
127 128 1.651240 GCTCATCGCCATGCACAGTT 61.651 55.000 0.00 0.00 0.00 3.16
128 129 2.110967 GCTCATCGCCATGCACAGT 61.111 57.895 0.00 0.00 0.00 3.55
129 130 2.713770 GCTCATCGCCATGCACAG 59.286 61.111 0.00 0.00 0.00 3.66
138 139 1.508088 CAAACCAAGGGCTCATCGC 59.492 57.895 0.00 0.00 38.13 4.58
139 140 1.508088 GCAAACCAAGGGCTCATCG 59.492 57.895 0.00 0.00 0.00 3.84
140 141 0.960364 TCGCAAACCAAGGGCTCATC 60.960 55.000 0.00 0.00 0.00 2.92
141 142 0.962356 CTCGCAAACCAAGGGCTCAT 60.962 55.000 0.00 0.00 0.00 2.90
142 143 1.600636 CTCGCAAACCAAGGGCTCA 60.601 57.895 0.00 0.00 0.00 4.26
143 144 0.321298 TACTCGCAAACCAAGGGCTC 60.321 55.000 0.00 0.00 0.00 4.70
425 430 4.415596 TGATTTGCCAGGGTTTTAGATGT 58.584 39.130 0.00 0.00 0.00 3.06
622 627 9.921637 GTTGGAATTTCAAATGTTAATGGTAGA 57.078 29.630 0.00 0.00 0.00 2.59
623 628 9.927668 AGTTGGAATTTCAAATGTTAATGGTAG 57.072 29.630 0.00 0.00 0.00 3.18
846 1070 4.563580 GGGATACTGGGTGCATACTGTATG 60.564 50.000 20.74 20.74 39.18 2.39
847 1071 3.583086 GGGATACTGGGTGCATACTGTAT 59.417 47.826 17.08 17.08 0.00 2.29
848 1072 2.969950 GGGATACTGGGTGCATACTGTA 59.030 50.000 10.96 10.96 0.00 2.74
849 1073 1.768870 GGGATACTGGGTGCATACTGT 59.231 52.381 0.00 0.00 0.00 3.55
850 1074 1.072331 GGGGATACTGGGTGCATACTG 59.928 57.143 0.00 0.00 0.00 2.74
851 1075 1.061346 AGGGGATACTGGGTGCATACT 60.061 52.381 0.00 0.00 0.00 2.12
852 1076 1.435256 AGGGGATACTGGGTGCATAC 58.565 55.000 0.00 0.00 0.00 2.39
853 1077 2.494627 CCTAGGGGATACTGGGTGCATA 60.495 54.545 0.00 0.00 34.67 3.14
854 1078 1.734655 CTAGGGGATACTGGGTGCAT 58.265 55.000 0.00 0.00 0.00 3.96
855 1079 0.399949 CCTAGGGGATACTGGGTGCA 60.400 60.000 0.00 0.00 34.67 4.57
856 1080 0.105142 TCCTAGGGGATACTGGGTGC 60.105 60.000 9.46 0.00 39.84 5.01
857 1081 1.220750 ACTCCTAGGGGATACTGGGTG 59.779 57.143 18.04 0.00 41.36 4.61
858 1082 1.220750 CACTCCTAGGGGATACTGGGT 59.779 57.143 18.04 0.00 41.36 4.51
859 1083 2.016905 CACTCCTAGGGGATACTGGG 57.983 60.000 18.04 0.00 41.36 4.45
860 1084 1.343069 GCACTCCTAGGGGATACTGG 58.657 60.000 18.04 0.00 41.36 4.00
861 1085 2.088104 TGCACTCCTAGGGGATACTG 57.912 55.000 18.04 3.79 41.36 2.74
862 1086 3.352611 AATGCACTCCTAGGGGATACT 57.647 47.619 18.04 0.00 41.36 2.12
863 1087 7.563924 TGTATATAATGCACTCCTAGGGGATAC 59.436 40.741 18.04 10.52 41.36 2.24
864 1088 7.658260 TGTATATAATGCACTCCTAGGGGATA 58.342 38.462 18.04 1.32 41.36 2.59
865 1089 6.512120 TGTATATAATGCACTCCTAGGGGAT 58.488 40.000 18.04 0.00 41.36 3.85
866 1090 5.910931 TGTATATAATGCACTCCTAGGGGA 58.089 41.667 18.04 0.00 39.70 4.81
867 1091 6.814954 ATGTATATAATGCACTCCTAGGGG 57.185 41.667 7.26 7.26 0.00 4.79
868 1092 7.984050 CAGAATGTATATAATGCACTCCTAGGG 59.016 40.741 9.46 2.03 0.00 3.53
869 1093 7.984050 CCAGAATGTATATAATGCACTCCTAGG 59.016 40.741 0.82 0.82 0.00 3.02
870 1094 8.753133 TCCAGAATGTATATAATGCACTCCTAG 58.247 37.037 0.00 0.00 0.00 3.02
871 1095 8.664669 TCCAGAATGTATATAATGCACTCCTA 57.335 34.615 0.00 0.00 0.00 2.94
872 1096 7.310921 CCTCCAGAATGTATATAATGCACTCCT 60.311 40.741 0.00 0.00 0.00 3.69
873 1097 6.820656 CCTCCAGAATGTATATAATGCACTCC 59.179 42.308 0.00 0.00 0.00 3.85
874 1098 7.332926 CACCTCCAGAATGTATATAATGCACTC 59.667 40.741 0.00 0.00 0.00 3.51
875 1099 7.164122 CACCTCCAGAATGTATATAATGCACT 58.836 38.462 0.00 0.00 0.00 4.40
1026 1552 3.423539 TCCTTGATTTCCACTGGACTG 57.576 47.619 0.00 0.00 0.00 3.51
1142 1674 4.006319 GGAATGCCTATCAGAATGCCTAC 58.994 47.826 0.00 0.00 34.76 3.18
2258 2828 3.317430 AGCAGCTTTTTCTTCTGGTCAAG 59.683 43.478 0.00 0.00 33.86 3.02
2259 2829 3.290710 AGCAGCTTTTTCTTCTGGTCAA 58.709 40.909 0.00 0.00 33.86 3.18
2459 3195 4.097892 AGTTTGTTGAATTTCTCTTGGCGT 59.902 37.500 0.00 0.00 0.00 5.68
2561 3309 5.639506 GCTCTAAGAAAGTGTTAGTGCATCA 59.360 40.000 11.90 0.00 42.53 3.07
2687 3435 3.045634 TCCTCCTGTTTCTTGACTTCCA 58.954 45.455 0.00 0.00 0.00 3.53
2841 3589 4.357918 AAGAGCCAATGAACTGTGTACT 57.642 40.909 0.00 0.00 0.00 2.73
2902 3650 8.842280 CATAACAACCCACTTCTACAGTTTTTA 58.158 33.333 0.00 0.00 30.92 1.52
2923 3671 5.761726 TCATGAGCCACAAGATGATCATAAC 59.238 40.000 8.54 0.00 34.55 1.89
2974 3722 5.118990 ACAAGTTATGCCAGCACACTATAG 58.881 41.667 6.71 0.00 0.00 1.31
2982 3730 1.305219 GGCGACAAGTTATGCCAGCA 61.305 55.000 0.00 0.00 46.76 4.41
3003 3751 1.214175 TCCAAGTGCAAAAGTCCTCCA 59.786 47.619 0.00 0.00 0.00 3.86
3056 3804 3.375610 AGATGCTCTAGTACACACTGTCG 59.624 47.826 0.00 0.00 36.14 4.35
3062 3810 4.086457 TGTTGGAGATGCTCTAGTACACA 58.914 43.478 0.00 0.00 0.00 3.72
3064 3812 4.344978 ACTGTTGGAGATGCTCTAGTACA 58.655 43.478 0.00 0.00 0.00 2.90
3070 3818 3.607741 CATCAACTGTTGGAGATGCTCT 58.392 45.455 19.55 0.00 32.47 4.09
3074 3822 4.508461 TTTGCATCAACTGTTGGAGATG 57.492 40.909 19.55 16.07 40.52 2.90
3075 3823 5.733620 ATTTTGCATCAACTGTTGGAGAT 57.266 34.783 19.55 4.21 0.00 2.75
3076 3824 5.183713 CCTATTTTGCATCAACTGTTGGAGA 59.816 40.000 19.55 1.84 0.00 3.71
3078 3826 4.220382 CCCTATTTTGCATCAACTGTTGGA 59.780 41.667 19.55 7.74 0.00 3.53
3080 3828 3.928375 GCCCTATTTTGCATCAACTGTTG 59.072 43.478 14.24 14.24 0.00 3.33
3081 3829 3.577848 TGCCCTATTTTGCATCAACTGTT 59.422 39.130 0.00 0.00 31.31 3.16
3082 3830 3.164268 TGCCCTATTTTGCATCAACTGT 58.836 40.909 0.00 0.00 31.31 3.55
3083 3831 3.872511 TGCCCTATTTTGCATCAACTG 57.127 42.857 0.00 0.00 31.31 3.16
3091 3839 4.470334 TTTTCTGGATGCCCTATTTTGC 57.530 40.909 0.00 0.00 0.00 3.68
3117 3959 1.490490 TCTCTCTCTCTCTCTCCTGCC 59.510 57.143 0.00 0.00 0.00 4.85
3121 3963 3.933861 ACCTTCTCTCTCTCTCTCTCC 57.066 52.381 0.00 0.00 0.00 3.71
3122 3964 6.318900 CCTAAAACCTTCTCTCTCTCTCTCTC 59.681 46.154 0.00 0.00 0.00 3.20
3123 3965 6.187682 CCTAAAACCTTCTCTCTCTCTCTCT 58.812 44.000 0.00 0.00 0.00 3.10
3124 3966 5.949952 ACCTAAAACCTTCTCTCTCTCTCTC 59.050 44.000 0.00 0.00 0.00 3.20
3126 3968 5.712917 TGACCTAAAACCTTCTCTCTCTCTC 59.287 44.000 0.00 0.00 0.00 3.20
3129 3971 6.154363 CAGATGACCTAAAACCTTCTCTCTCT 59.846 42.308 0.00 0.00 0.00 3.10
3131 3973 6.019748 TCAGATGACCTAAAACCTTCTCTCT 58.980 40.000 0.00 0.00 0.00 3.10
3132 3974 6.287589 TCAGATGACCTAAAACCTTCTCTC 57.712 41.667 0.00 0.00 0.00 3.20
3134 3976 7.745620 TTTTCAGATGACCTAAAACCTTCTC 57.254 36.000 0.00 0.00 0.00 2.87
3135 3977 8.712228 AATTTTCAGATGACCTAAAACCTTCT 57.288 30.769 0.00 0.00 0.00 2.85
3136 3978 9.764363 AAAATTTTCAGATGACCTAAAACCTTC 57.236 29.630 0.00 0.00 0.00 3.46
3137 3979 9.764363 GAAAATTTTCAGATGACCTAAAACCTT 57.236 29.630 23.06 0.00 37.15 3.50
3139 3981 9.196552 CAGAAAATTTTCAGATGACCTAAAACC 57.803 33.333 28.00 0.76 39.61 3.27
3140 3982 8.703336 GCAGAAAATTTTCAGATGACCTAAAAC 58.297 33.333 28.00 4.17 39.61 2.43
3142 3984 7.015098 TGGCAGAAAATTTTCAGATGACCTAAA 59.985 33.333 28.00 6.06 39.61 1.85
3143 3985 6.493115 TGGCAGAAAATTTTCAGATGACCTAA 59.507 34.615 28.00 6.37 39.61 2.69
3144 3986 6.009589 TGGCAGAAAATTTTCAGATGACCTA 58.990 36.000 28.00 6.97 39.61 3.08
3145 3987 4.834496 TGGCAGAAAATTTTCAGATGACCT 59.166 37.500 28.00 6.48 39.61 3.85
3146 3988 5.138125 TGGCAGAAAATTTTCAGATGACC 57.862 39.130 28.00 21.10 39.61 4.02
3147 3989 7.814107 TGTTATGGCAGAAAATTTTCAGATGAC 59.186 33.333 28.00 21.01 39.61 3.06
3149 3991 8.712285 ATGTTATGGCAGAAAATTTTCAGATG 57.288 30.769 28.00 19.70 39.61 2.90
3150 3992 9.729281 AAATGTTATGGCAGAAAATTTTCAGAT 57.271 25.926 28.00 17.02 39.61 2.90
3152 3994 9.815936 GAAAATGTTATGGCAGAAAATTTTCAG 57.184 29.630 35.67 22.36 40.08 3.02
3154 3996 9.815936 CAGAAAATGTTATGGCAGAAAATTTTC 57.184 29.630 34.72 34.72 40.38 2.29
3155 3997 9.558396 TCAGAAAATGTTATGGCAGAAAATTTT 57.442 25.926 27.17 27.17 0.00 1.82
3160 4002 5.471797 TCGTCAGAAAATGTTATGGCAGAAA 59.528 36.000 0.00 0.00 29.70 2.52
3163 4005 4.944962 TCGTCAGAAAATGTTATGGCAG 57.055 40.909 0.00 0.00 29.70 4.85
3164 4006 4.083003 GGTTCGTCAGAAAATGTTATGGCA 60.083 41.667 0.00 0.00 38.23 4.92
3165 4007 4.083003 TGGTTCGTCAGAAAATGTTATGGC 60.083 41.667 0.00 0.00 38.23 4.40
3166 4008 5.621197 TGGTTCGTCAGAAAATGTTATGG 57.379 39.130 0.00 0.00 38.23 2.74
3167 4009 8.023128 AGATTTGGTTCGTCAGAAAATGTTATG 58.977 33.333 0.00 0.00 38.23 1.90
3171 4013 6.391227 AAGATTTGGTTCGTCAGAAAATGT 57.609 33.333 0.00 0.00 38.23 2.71
3173 4015 7.038154 TGAAAGATTTGGTTCGTCAGAAAAT 57.962 32.000 0.00 0.00 38.23 1.82
3174 4016 6.443934 TGAAAGATTTGGTTCGTCAGAAAA 57.556 33.333 0.00 0.00 38.23 2.29
3175 4017 6.443934 TTGAAAGATTTGGTTCGTCAGAAA 57.556 33.333 0.00 0.00 38.23 2.52
3176 4018 6.443934 TTTGAAAGATTTGGTTCGTCAGAA 57.556 33.333 0.00 0.00 0.00 3.02
3177 4019 6.633500 ATTTGAAAGATTTGGTTCGTCAGA 57.367 33.333 0.00 0.00 0.00 3.27
3179 4021 6.568869 ACAATTTGAAAGATTTGGTTCGTCA 58.431 32.000 2.79 0.00 0.00 4.35
3180 4022 7.646130 TGTACAATTTGAAAGATTTGGTTCGTC 59.354 33.333 2.79 0.00 0.00 4.20
3181 4023 7.484975 TGTACAATTTGAAAGATTTGGTTCGT 58.515 30.769 2.79 0.00 0.00 3.85
3182 4024 7.922505 TGTACAATTTGAAAGATTTGGTTCG 57.077 32.000 2.79 0.00 0.00 3.95
3183 4025 9.260002 ACATGTACAATTTGAAAGATTTGGTTC 57.740 29.630 0.00 0.00 0.00 3.62
3184 4026 9.044150 CACATGTACAATTTGAAAGATTTGGTT 57.956 29.630 0.00 0.00 0.00 3.67
3185 4027 8.420222 TCACATGTACAATTTGAAAGATTTGGT 58.580 29.630 0.00 0.00 0.00 3.67
3196 4038 9.726232 CCAAGATTCTATCACATGTACAATTTG 57.274 33.333 0.00 0.00 0.00 2.32
3197 4039 9.466497 ACCAAGATTCTATCACATGTACAATTT 57.534 29.630 0.00 0.00 0.00 1.82
3199 4041 9.770097 CTACCAAGATTCTATCACATGTACAAT 57.230 33.333 0.00 0.00 0.00 2.71
3200 4042 8.758829 ACTACCAAGATTCTATCACATGTACAA 58.241 33.333 0.00 0.00 0.00 2.41
3201 4043 8.197439 CACTACCAAGATTCTATCACATGTACA 58.803 37.037 0.00 0.00 0.00 2.90
3202 4044 8.414003 TCACTACCAAGATTCTATCACATGTAC 58.586 37.037 0.00 0.00 0.00 2.90
3203 4045 8.533569 TCACTACCAAGATTCTATCACATGTA 57.466 34.615 0.00 0.00 0.00 2.29
3204 4046 7.423844 TCACTACCAAGATTCTATCACATGT 57.576 36.000 0.00 0.00 0.00 3.21
3205 4047 9.987272 TTATCACTACCAAGATTCTATCACATG 57.013 33.333 0.00 0.00 0.00 3.21
3218 4060 9.224267 CCAATGGATATCTTTATCACTACCAAG 57.776 37.037 2.05 0.00 36.68 3.61
3219 4061 7.665559 GCCAATGGATATCTTTATCACTACCAA 59.334 37.037 2.05 0.00 36.68 3.67
3220 4062 7.017551 AGCCAATGGATATCTTTATCACTACCA 59.982 37.037 2.05 0.00 36.68 3.25
3221 4063 7.398024 AGCCAATGGATATCTTTATCACTACC 58.602 38.462 2.05 0.00 36.68 3.18
3222 4064 9.944376 TTAGCCAATGGATATCTTTATCACTAC 57.056 33.333 2.05 0.00 36.68 2.73
3231 4073 9.823647 CGAGTATTATTAGCCAATGGATATCTT 57.176 33.333 2.05 0.00 0.00 2.40
3232 4074 9.201989 TCGAGTATTATTAGCCAATGGATATCT 57.798 33.333 2.05 0.00 0.00 1.98
3233 4075 9.817809 TTCGAGTATTATTAGCCAATGGATATC 57.182 33.333 2.05 0.00 0.00 1.63
3235 4077 9.599866 CATTCGAGTATTATTAGCCAATGGATA 57.400 33.333 2.05 0.00 0.00 2.59
3236 4078 8.103305 ACATTCGAGTATTATTAGCCAATGGAT 58.897 33.333 2.05 0.00 0.00 3.41
3237 4079 7.387673 CACATTCGAGTATTATTAGCCAATGGA 59.612 37.037 2.05 0.00 0.00 3.41
3238 4080 7.173218 ACACATTCGAGTATTATTAGCCAATGG 59.827 37.037 0.00 0.00 0.00 3.16
3239 4081 8.087982 ACACATTCGAGTATTATTAGCCAATG 57.912 34.615 0.00 0.00 0.00 2.82
3240 4082 7.931407 TGACACATTCGAGTATTATTAGCCAAT 59.069 33.333 0.00 0.00 0.00 3.16
3241 4083 7.223971 GTGACACATTCGAGTATTATTAGCCAA 59.776 37.037 0.00 0.00 0.00 4.52
3242 4084 6.700081 GTGACACATTCGAGTATTATTAGCCA 59.300 38.462 0.00 0.00 0.00 4.75
3243 4085 6.700081 TGTGACACATTCGAGTATTATTAGCC 59.300 38.462 3.56 0.00 0.00 3.93
3244 4086 7.694388 TGTGACACATTCGAGTATTATTAGC 57.306 36.000 3.56 0.00 0.00 3.09
3245 4087 9.684448 AGATGTGACACATTCGAGTATTATTAG 57.316 33.333 21.66 0.00 39.27 1.73
3246 4088 9.678941 GAGATGTGACACATTCGAGTATTATTA 57.321 33.333 21.66 0.00 39.27 0.98
3247 4089 8.417106 AGAGATGTGACACATTCGAGTATTATT 58.583 33.333 21.66 0.00 39.27 1.40
3248 4090 7.946207 AGAGATGTGACACATTCGAGTATTAT 58.054 34.615 21.66 0.00 39.27 1.28
3249 4091 7.334844 AGAGATGTGACACATTCGAGTATTA 57.665 36.000 21.66 0.00 39.27 0.98
3250 4092 6.214191 AGAGATGTGACACATTCGAGTATT 57.786 37.500 21.66 0.00 39.27 1.89
3251 4093 5.843673 AGAGATGTGACACATTCGAGTAT 57.156 39.130 21.66 0.00 39.27 2.12
3252 4094 5.066117 GGTAGAGATGTGACACATTCGAGTA 59.934 44.000 21.66 7.53 39.27 2.59
3253 4095 4.142359 GGTAGAGATGTGACACATTCGAGT 60.142 45.833 21.66 8.40 39.27 4.18
3254 4096 4.142381 TGGTAGAGATGTGACACATTCGAG 60.142 45.833 21.66 0.00 39.27 4.04
3255 4097 3.761752 TGGTAGAGATGTGACACATTCGA 59.238 43.478 21.66 13.72 39.27 3.71
3256 4098 4.110036 TGGTAGAGATGTGACACATTCG 57.890 45.455 21.66 0.00 39.27 3.34
3257 4099 4.742167 CGATGGTAGAGATGTGACACATTC 59.258 45.833 21.66 18.57 39.27 2.67
3258 4100 4.442052 CCGATGGTAGAGATGTGACACATT 60.442 45.833 21.66 11.83 39.27 2.71
3261 4103 2.688446 TCCGATGGTAGAGATGTGACAC 59.312 50.000 0.00 0.00 0.00 3.67
3263 4105 4.302455 CAATCCGATGGTAGAGATGTGAC 58.698 47.826 0.00 0.00 0.00 3.67
3265 4107 3.657634 CCAATCCGATGGTAGAGATGTG 58.342 50.000 0.00 0.00 35.65 3.21
3275 4117 4.082300 TGTTGAATGAAACCAATCCGATGG 60.082 41.667 0.97 0.97 46.38 3.51
3277 4119 4.766891 ACTGTTGAATGAAACCAATCCGAT 59.233 37.500 0.00 0.00 0.00 4.18
3278 4120 4.141287 ACTGTTGAATGAAACCAATCCGA 58.859 39.130 0.00 0.00 0.00 4.55
3279 4121 4.503741 ACTGTTGAATGAAACCAATCCG 57.496 40.909 0.00 0.00 0.00 4.18
3299 4141 9.000018 GTCGCTTGAATGACTTTGAATATTTAC 58.000 33.333 0.00 0.00 32.37 2.01
3300 4142 8.946085 AGTCGCTTGAATGACTTTGAATATTTA 58.054 29.630 0.00 0.00 42.61 1.40
3303 4145 6.992063 AGTCGCTTGAATGACTTTGAATAT 57.008 33.333 0.00 0.00 42.61 1.28
3304 4146 7.817478 TCTTAGTCGCTTGAATGACTTTGAATA 59.183 33.333 5.70 0.00 42.61 1.75
3310 4622 5.392767 TCTCTTAGTCGCTTGAATGACTT 57.607 39.130 5.70 0.00 42.61 3.01
3312 4624 5.578727 ACATTCTCTTAGTCGCTTGAATGAC 59.421 40.000 16.91 0.00 41.61 3.06
3331 4785 2.496470 AGTGGTAGGGAAGACGACATTC 59.504 50.000 0.00 0.00 0.00 2.67
3336 4790 2.885135 TACAGTGGTAGGGAAGACGA 57.115 50.000 0.00 0.00 0.00 4.20
3340 4794 4.755123 CAGTTGTTTACAGTGGTAGGGAAG 59.245 45.833 0.00 0.00 0.00 3.46
3344 4798 2.812011 GGCAGTTGTTTACAGTGGTAGG 59.188 50.000 0.00 0.00 0.00 3.18
3349 4803 3.548818 GCTCAAGGCAGTTGTTTACAGTG 60.549 47.826 0.00 0.00 41.35 3.66
3380 4834 9.113876 GTCAACTTGCATGTAGTTATTGTAAAC 57.886 33.333 5.56 0.00 34.22 2.01
3383 4837 6.091577 CGGTCAACTTGCATGTAGTTATTGTA 59.908 38.462 5.56 0.00 34.22 2.41
3390 4844 2.831685 TCGGTCAACTTGCATGTAGT 57.168 45.000 5.56 0.00 0.00 2.73
3398 4852 5.655893 AAATTGCAAATTCGGTCAACTTG 57.344 34.783 1.71 0.00 0.00 3.16
3407 4861 7.171447 TCAACTTACCAAAATTGCAAATTCG 57.829 32.000 1.71 0.00 0.00 3.34
3421 4875 4.404394 TCCTCTCGCAATATCAACTTACCA 59.596 41.667 0.00 0.00 0.00 3.25
3423 4877 4.985409 CCTCCTCTCGCAATATCAACTTAC 59.015 45.833 0.00 0.00 0.00 2.34
3433 4887 1.207791 ACCATTCCTCCTCTCGCAAT 58.792 50.000 0.00 0.00 0.00 3.56
3437 4891 1.137872 CTCCAACCATTCCTCCTCTCG 59.862 57.143 0.00 0.00 0.00 4.04
3445 4899 3.721087 TCTTCTTCCTCCAACCATTCC 57.279 47.619 0.00 0.00 0.00 3.01
3449 4903 3.494398 CGTCTTTCTTCTTCCTCCAACCA 60.494 47.826 0.00 0.00 0.00 3.67
3450 4904 3.067833 CGTCTTTCTTCTTCCTCCAACC 58.932 50.000 0.00 0.00 0.00 3.77
3452 4906 2.969950 TCCGTCTTTCTTCTTCCTCCAA 59.030 45.455 0.00 0.00 0.00 3.53
3457 4926 3.263261 GGATGTCCGTCTTTCTTCTTCC 58.737 50.000 0.00 0.00 0.00 3.46
3458 4927 3.926616 TGGATGTCCGTCTTTCTTCTTC 58.073 45.455 0.00 0.00 39.43 2.87
3470 4939 4.616181 GTTAAGAACCAATGGATGTCCG 57.384 45.455 6.16 0.00 39.43 4.79
3483 4952 7.933215 TTTTCTGGGCTATAAGGTTAAGAAC 57.067 36.000 0.00 0.00 0.00 3.01
3484 4953 8.966868 CAATTTTCTGGGCTATAAGGTTAAGAA 58.033 33.333 0.00 0.00 0.00 2.52
3491 4960 8.406297 GTTAAGTCAATTTTCTGGGCTATAAGG 58.594 37.037 0.00 0.00 0.00 2.69
3494 4963 7.406916 TGGTTAAGTCAATTTTCTGGGCTATA 58.593 34.615 0.00 0.00 0.00 1.31
3497 4966 4.479158 TGGTTAAGTCAATTTTCTGGGCT 58.521 39.130 0.00 0.00 0.00 5.19
3498 4967 4.864704 TGGTTAAGTCAATTTTCTGGGC 57.135 40.909 0.00 0.00 0.00 5.36
3499 4968 7.044798 TGTTTTGGTTAAGTCAATTTTCTGGG 58.955 34.615 0.00 0.00 0.00 4.45
3509 4979 9.712305 TCTGAAAATTTTGTTTTGGTTAAGTCA 57.288 25.926 8.47 0.00 0.00 3.41
3515 4985 6.939730 AGTGGTCTGAAAATTTTGTTTTGGTT 59.060 30.769 8.47 0.00 0.00 3.67
3517 4987 6.983474 AGTGGTCTGAAAATTTTGTTTTGG 57.017 33.333 8.47 0.00 0.00 3.28
3519 4989 9.665719 ATGTAAGTGGTCTGAAAATTTTGTTTT 57.334 25.926 8.47 0.00 0.00 2.43
3527 4997 6.706270 CGGCTATATGTAAGTGGTCTGAAAAT 59.294 38.462 0.00 0.00 0.00 1.82
3535 5005 1.346722 GGCCGGCTATATGTAAGTGGT 59.653 52.381 28.56 0.00 0.00 4.16
3537 5007 1.623811 AGGGCCGGCTATATGTAAGTG 59.376 52.381 28.56 0.00 0.00 3.16
3543 5014 2.554032 CAGAAAAAGGGCCGGCTATATG 59.446 50.000 28.56 10.67 0.00 1.78
3544 5015 2.441750 TCAGAAAAAGGGCCGGCTATAT 59.558 45.455 28.56 8.04 0.00 0.86
3545 5016 1.841277 TCAGAAAAAGGGCCGGCTATA 59.159 47.619 28.56 0.00 0.00 1.31
3546 5017 0.623723 TCAGAAAAAGGGCCGGCTAT 59.376 50.000 28.56 12.75 0.00 2.97
3547 5018 0.402504 TTCAGAAAAAGGGCCGGCTA 59.597 50.000 28.56 0.00 0.00 3.93
3548 5019 0.895559 CTTCAGAAAAAGGGCCGGCT 60.896 55.000 28.56 4.40 0.00 5.52
3549 5020 1.586541 CTTCAGAAAAAGGGCCGGC 59.413 57.895 21.18 21.18 0.00 6.13
3553 5024 1.620822 TCTGGCTTCAGAAAAAGGGC 58.379 50.000 0.00 0.00 43.84 5.19
3568 5039 3.552273 GCATCTTTGCTTATGCCATCTGG 60.552 47.826 0.00 0.00 45.77 3.86
3569 5040 3.639538 GCATCTTTGCTTATGCCATCTG 58.360 45.455 0.00 0.00 45.77 2.90
3582 5053 2.950309 CCATTCCTCCTCAGCATCTTTG 59.050 50.000 0.00 0.00 0.00 2.77
3583 5054 2.686118 GCCATTCCTCCTCAGCATCTTT 60.686 50.000 0.00 0.00 0.00 2.52
3584 5055 1.133853 GCCATTCCTCCTCAGCATCTT 60.134 52.381 0.00 0.00 0.00 2.40
3585 5056 0.473326 GCCATTCCTCCTCAGCATCT 59.527 55.000 0.00 0.00 0.00 2.90
3586 5057 0.182061 TGCCATTCCTCCTCAGCATC 59.818 55.000 0.00 0.00 0.00 3.91
3587 5058 0.183014 CTGCCATTCCTCCTCAGCAT 59.817 55.000 0.00 0.00 0.00 3.79
3588 5059 1.605992 CTGCCATTCCTCCTCAGCA 59.394 57.895 0.00 0.00 0.00 4.41
3589 5060 1.823041 GCTGCCATTCCTCCTCAGC 60.823 63.158 0.00 0.00 42.46 4.26
3590 5061 1.523258 CGCTGCCATTCCTCCTCAG 60.523 63.158 0.00 0.00 0.00 3.35
3591 5062 1.841302 AACGCTGCCATTCCTCCTCA 61.841 55.000 0.00 0.00 0.00 3.86
3592 5063 0.678048 AAACGCTGCCATTCCTCCTC 60.678 55.000 0.00 0.00 0.00 3.71
3593 5064 0.962356 CAAACGCTGCCATTCCTCCT 60.962 55.000 0.00 0.00 0.00 3.69
3594 5065 0.960364 TCAAACGCTGCCATTCCTCC 60.960 55.000 0.00 0.00 0.00 4.30
3595 5066 0.881118 TTCAAACGCTGCCATTCCTC 59.119 50.000 0.00 0.00 0.00 3.71
3596 5067 1.270550 CTTTCAAACGCTGCCATTCCT 59.729 47.619 0.00 0.00 0.00 3.36
3597 5068 1.669795 CCTTTCAAACGCTGCCATTCC 60.670 52.381 0.00 0.00 0.00 3.01
3598 5069 1.269448 TCCTTTCAAACGCTGCCATTC 59.731 47.619 0.00 0.00 0.00 2.67
3599 5070 1.327303 TCCTTTCAAACGCTGCCATT 58.673 45.000 0.00 0.00 0.00 3.16
3600 5071 1.270550 CTTCCTTTCAAACGCTGCCAT 59.729 47.619 0.00 0.00 0.00 4.40
3601 5072 0.667993 CTTCCTTTCAAACGCTGCCA 59.332 50.000 0.00 0.00 0.00 4.92
3602 5073 0.039165 CCTTCCTTTCAAACGCTGCC 60.039 55.000 0.00 0.00 0.00 4.85
3603 5074 0.951558 TCCTTCCTTTCAAACGCTGC 59.048 50.000 0.00 0.00 0.00 5.25
3604 5075 3.708563 TTTCCTTCCTTTCAAACGCTG 57.291 42.857 0.00 0.00 0.00 5.18
3605 5076 3.699538 AGTTTTCCTTCCTTTCAAACGCT 59.300 39.130 0.00 0.00 33.44 5.07
3606 5077 4.041740 AGTTTTCCTTCCTTTCAAACGC 57.958 40.909 0.00 0.00 33.44 4.84
3607 5078 6.577427 CGATTAGTTTTCCTTCCTTTCAAACG 59.423 38.462 0.00 0.00 33.44 3.60
3608 5079 6.861572 CCGATTAGTTTTCCTTCCTTTCAAAC 59.138 38.462 0.00 0.00 0.00 2.93
3629 5100 1.219935 GTTGGCCTCGTAACCCGAT 59.780 57.895 3.32 0.00 46.23 4.18
3632 5103 0.250597 AACTGTTGGCCTCGTAACCC 60.251 55.000 3.32 0.00 0.00 4.11
3633 5104 0.872388 CAACTGTTGGCCTCGTAACC 59.128 55.000 12.66 0.00 0.00 2.85
3636 5107 0.319211 CGTCAACTGTTGGCCTCGTA 60.319 55.000 18.52 0.00 29.54 3.43
3639 5110 2.617274 GCCGTCAACTGTTGGCCTC 61.617 63.158 18.52 7.43 41.70 4.70
3643 5114 2.590575 ACGGCCGTCAACTGTTGG 60.591 61.111 28.70 5.90 0.00 3.77
3654 5125 0.179111 TTGCTGAGATTAGACGGCCG 60.179 55.000 26.86 26.86 37.57 6.13
3659 5130 1.267087 GCGCGTTTGCTGAGATTAGAC 60.267 52.381 8.43 0.00 39.65 2.59
3660 5131 0.999406 GCGCGTTTGCTGAGATTAGA 59.001 50.000 8.43 0.00 39.65 2.10
3662 5133 1.128507 CAAGCGCGTTTGCTGAGATTA 59.871 47.619 22.52 0.00 46.60 1.75
3663 5134 0.110056 CAAGCGCGTTTGCTGAGATT 60.110 50.000 22.52 0.00 46.60 2.40
3664 5135 0.950555 TCAAGCGCGTTTGCTGAGAT 60.951 50.000 28.07 0.00 46.60 2.75
3666 5137 0.110056 AATCAAGCGCGTTTGCTGAG 60.110 50.000 28.07 7.20 46.60 3.35
3688 5768 4.796231 CGGGAGACGGCCGACAAG 62.796 72.222 35.90 14.31 39.42 3.16
3705 5785 2.959275 CGTAAGCGTCATCCCAGAC 58.041 57.895 0.00 0.00 35.19 3.51
3728 5808 5.887598 TGGAATATCAACCACTCATCTTTGG 59.112 40.000 0.00 0.00 39.00 3.28
3731 5811 5.128919 GCTGGAATATCAACCACTCATCTT 58.871 41.667 0.00 0.00 32.44 2.40
3733 5813 4.274459 GTGCTGGAATATCAACCACTCATC 59.726 45.833 0.00 0.00 32.44 2.92
3734 5814 4.202441 GTGCTGGAATATCAACCACTCAT 58.798 43.478 0.00 0.00 32.44 2.90
3735 5815 3.008923 TGTGCTGGAATATCAACCACTCA 59.991 43.478 0.00 0.00 32.44 3.41
3794 5877 2.279120 CGCGCAGAGGGAGTGATC 60.279 66.667 8.75 0.00 34.27 2.92
3885 5971 7.450124 AGATCTTATAGGCGACGAATCTAAA 57.550 36.000 0.00 0.00 0.00 1.85
3894 5980 4.865365 GCATGGTAAGATCTTATAGGCGAC 59.135 45.833 17.95 6.13 0.00 5.19
3900 5986 5.248477 GGGGTGAGCATGGTAAGATCTTATA 59.752 44.000 17.95 10.92 0.00 0.98
3922 6008 7.571080 AGACTAGACTAGATAAAAAGACGGG 57.429 40.000 16.55 0.00 0.00 5.28
3941 6027 9.909644 GCGAGAAAAATATGTATTCCTAGACTA 57.090 33.333 0.00 0.00 0.00 2.59
3942 6028 8.643324 AGCGAGAAAAATATGTATTCCTAGACT 58.357 33.333 0.00 0.00 0.00 3.24
3943 6029 8.819643 AGCGAGAAAAATATGTATTCCTAGAC 57.180 34.615 0.00 0.00 0.00 2.59
3944 6030 9.477484 GAAGCGAGAAAAATATGTATTCCTAGA 57.523 33.333 0.00 0.00 0.00 2.43
3977 6063 0.107703 TAGCAGCAGATCCAAACCGG 60.108 55.000 0.00 0.00 0.00 5.28
4035 6121 3.005472 TCGTTCTTGCAGTACAGCTTACT 59.995 43.478 11.81 3.59 34.99 2.24
4037 6123 3.653539 TCGTTCTTGCAGTACAGCTTA 57.346 42.857 11.81 0.00 34.99 3.09
4039 6125 2.408050 CTTCGTTCTTGCAGTACAGCT 58.592 47.619 11.81 0.00 34.99 4.24


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.