Multiple sequence alignment - TraesCS2A01G197000

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS2A01G197000 chr2A 100.000 2697 0 0 1 2697 166780691 166777995 0.000000e+00 4981.0
1 TraesCS2A01G197000 chr5B 94.366 781 43 1 803 1583 25334608 25333829 0.000000e+00 1197.0
2 TraesCS2A01G197000 chr5B 90.809 272 18 5 518 787 25335009 25334743 9.180000e-95 357.0
3 TraesCS2A01G197000 chr4D 86.977 860 102 7 1841 2697 508542565 508541713 0.000000e+00 959.0
4 TraesCS2A01G197000 chr4D 82.128 470 74 9 1944 2406 331033902 331033436 7.000000e-106 394.0
5 TraesCS2A01G197000 chr7A 83.671 937 100 27 1766 2697 385441151 385440263 0.000000e+00 833.0
6 TraesCS2A01G197000 chr5A 92.915 494 34 1 1090 1583 22593337 22593829 0.000000e+00 717.0
7 TraesCS2A01G197000 chr5A 91.126 293 22 1 800 1092 22572467 22572755 7.000000e-106 394.0
8 TraesCS2A01G197000 chr5A 90.576 191 14 2 1577 1766 523749515 523749702 1.600000e-62 250.0
9 TraesCS2A01G197000 chr5A 100.000 29 0 0 762 790 22572403 22572431 1.000000e-03 54.7
10 TraesCS2A01G197000 chr2B 89.394 462 49 0 1 462 708689931 708689470 1.390000e-162 582.0
11 TraesCS2A01G197000 chr2B 87.229 462 58 1 1 462 708688260 708687800 2.380000e-145 525.0
12 TraesCS2A01G197000 chr2B 87.755 441 38 7 80 515 87501409 87501838 4.010000e-138 501.0
13 TraesCS2A01G197000 chr6A 89.920 377 37 1 2 378 603335722 603336097 4.040000e-133 484.0
14 TraesCS2A01G197000 chr3B 83.547 547 58 14 1 515 510797381 510796835 1.450000e-132 483.0
15 TraesCS2A01G197000 chr3B 87.558 217 18 3 2483 2697 192021956 192022165 2.680000e-60 243.0
16 TraesCS2A01G197000 chr6D 89.683 378 38 1 1 378 20479523 20479899 5.220000e-132 481.0
17 TraesCS2A01G197000 chr6D 84.000 175 19 5 1577 1751 412491429 412491594 2.780000e-35 159.0
18 TraesCS2A01G197000 chr4A 79.067 750 119 24 1828 2559 374696552 374697281 5.220000e-132 481.0
19 TraesCS2A01G197000 chr4A 80.464 302 51 5 1990 2290 639374104 639373810 9.720000e-55 224.0
20 TraesCS2A01G197000 chr3A 89.125 377 39 2 2 378 736934850 736934476 4.070000e-128 468.0
21 TraesCS2A01G197000 chr3D 90.544 349 27 3 171 515 35708802 35709148 8.800000e-125 457.0
22 TraesCS2A01G197000 chr3D 90.258 349 28 6 171 515 570502699 570502353 4.090000e-123 451.0
23 TraesCS2A01G197000 chr3D 92.147 191 11 2 1577 1766 275625699 275625886 1.590000e-67 267.0
24 TraesCS2A01G197000 chr7B 88.127 379 43 2 1 378 606358990 606359367 1.470000e-122 449.0
25 TraesCS2A01G197000 chr1A 88.934 244 27 0 1 244 224729073 224729316 4.360000e-78 302.0
26 TraesCS2A01G197000 chr1A 88.018 217 17 6 2483 2697 6627211 6627420 5.770000e-62 248.0
27 TraesCS2A01G197000 chr1A 88.018 217 17 3 2483 2697 173778586 173778377 5.770000e-62 248.0
28 TraesCS2A01G197000 chr1B 75.824 546 130 1 1025 1568 12635302 12635847 2.650000e-70 276.0
29 TraesCS2A01G197000 chr1B 90.306 196 17 2 1577 1771 309491841 309491647 3.450000e-64 255.0
30 TraesCS2A01G197000 chr1B 82.558 172 28 2 1773 1943 623386033 623385863 1.670000e-32 150.0
31 TraesCS2A01G197000 chr1B 82.456 171 22 4 1581 1751 666838397 666838559 2.800000e-30 143.0
32 TraesCS2A01G197000 chr4B 88.018 217 17 3 2483 2697 436882882 436883091 5.770000e-62 248.0
33 TraesCS2A01G197000 chr5D 89.610 154 16 0 1618 1771 483128224 483128377 2.120000e-46 196.0
34 TraesCS2A01G197000 chr5D 92.035 113 6 1 1654 1766 372295231 372295340 3.600000e-34 156.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS2A01G197000 chr2A 166777995 166780691 2696 True 4981.0 4981 100.0000 1 2697 1 chr2A.!!$R1 2696
1 TraesCS2A01G197000 chr5B 25333829 25335009 1180 True 777.0 1197 92.5875 518 1583 2 chr5B.!!$R1 1065
2 TraesCS2A01G197000 chr4D 508541713 508542565 852 True 959.0 959 86.9770 1841 2697 1 chr4D.!!$R2 856
3 TraesCS2A01G197000 chr7A 385440263 385441151 888 True 833.0 833 83.6710 1766 2697 1 chr7A.!!$R1 931
4 TraesCS2A01G197000 chr2B 708687800 708689931 2131 True 553.5 582 88.3115 1 462 2 chr2B.!!$R1 461
5 TraesCS2A01G197000 chr3B 510796835 510797381 546 True 483.0 483 83.5470 1 515 1 chr3B.!!$R1 514
6 TraesCS2A01G197000 chr4A 374696552 374697281 729 False 481.0 481 79.0670 1828 2559 1 chr4A.!!$F1 731
7 TraesCS2A01G197000 chr1B 12635302 12635847 545 False 276.0 276 75.8240 1025 1568 1 chr1B.!!$F1 543

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
988 1766 0.039527 CCCATCGATACGCACGATCA 60.04 55.0 0.0 0.0 46.4 2.92 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2151 3363 0.321387 AGAGACACATGCTGGCAGTG 60.321 55.0 17.16 9.98 39.12 3.66 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
47 48 2.969238 CACAGATGCCGGCCGATC 60.969 66.667 30.73 22.63 0.00 3.69
68 69 1.745489 GGCATTCTCCGGCGACTTT 60.745 57.895 9.30 0.00 0.00 2.66
71 72 0.457853 CATTCTCCGGCGACTTTCGA 60.458 55.000 9.30 0.00 43.74 3.71
121 122 1.741770 CTCCGCTGGGTCTTTTCCG 60.742 63.158 0.00 0.00 33.83 4.30
176 177 0.690762 ACGTTAAGCCCTCACCATGT 59.309 50.000 0.00 0.00 0.00 3.21
244 245 2.123251 ATCCTCTCCGACGCCCAT 60.123 61.111 0.00 0.00 0.00 4.00
268 270 2.124983 CCCACAGGCATCTCCGTG 60.125 66.667 0.00 0.00 40.77 4.94
315 317 0.257039 GCCATGGGGTGAGTTCATCT 59.743 55.000 15.13 0.00 36.17 2.90
316 318 1.341383 GCCATGGGGTGAGTTCATCTT 60.341 52.381 15.13 0.00 36.17 2.40
382 384 1.764723 CCTCCATGGTAGATGTGCAGA 59.235 52.381 12.58 0.00 0.00 4.26
418 420 2.039137 AGGAAGGAGGGGTCGACC 59.961 66.667 27.04 27.04 39.11 4.79
440 442 1.681327 CCTTGCTGCAGCTTGGGAT 60.681 57.895 36.61 0.00 42.66 3.85
441 443 1.511305 CTTGCTGCAGCTTGGGATG 59.489 57.895 36.61 16.10 42.66 3.51
462 464 4.972875 CACCCATGGAGCTTCCTC 57.027 61.111 15.22 0.00 37.46 3.71
475 477 5.606348 GAGCTTCCTCCTTTCTATCTTCA 57.394 43.478 0.00 0.00 31.68 3.02
476 478 5.600696 GAGCTTCCTCCTTTCTATCTTCAG 58.399 45.833 0.00 0.00 31.68 3.02
477 479 4.126437 GCTTCCTCCTTTCTATCTTCAGC 58.874 47.826 0.00 0.00 0.00 4.26
478 480 4.141733 GCTTCCTCCTTTCTATCTTCAGCT 60.142 45.833 0.00 0.00 0.00 4.24
479 481 5.350504 TTCCTCCTTTCTATCTTCAGCTG 57.649 43.478 7.63 7.63 0.00 4.24
481 483 4.648762 TCCTCCTTTCTATCTTCAGCTGAG 59.351 45.833 17.43 11.30 0.00 3.35
482 484 4.405358 CCTCCTTTCTATCTTCAGCTGAGT 59.595 45.833 17.43 9.79 0.00 3.41
483 485 5.104982 CCTCCTTTCTATCTTCAGCTGAGTT 60.105 44.000 17.43 8.32 0.00 3.01
484 486 5.971763 TCCTTTCTATCTTCAGCTGAGTTC 58.028 41.667 17.43 0.00 0.00 3.01
485 487 4.803088 CCTTTCTATCTTCAGCTGAGTTCG 59.197 45.833 17.43 7.23 0.00 3.95
486 488 3.428746 TCTATCTTCAGCTGAGTTCGC 57.571 47.619 17.43 0.00 0.00 4.70
487 489 2.099921 TCTATCTTCAGCTGAGTTCGCC 59.900 50.000 17.43 0.00 0.00 5.54
488 490 0.107945 ATCTTCAGCTGAGTTCGCCC 60.108 55.000 17.43 0.00 0.00 6.13
490 492 3.254024 TTCAGCTGAGTTCGCCCCC 62.254 63.158 17.43 0.00 0.00 5.40
491 493 3.710722 CAGCTGAGTTCGCCCCCT 61.711 66.667 8.42 0.00 0.00 4.79
492 494 3.394836 AGCTGAGTTCGCCCCCTC 61.395 66.667 0.00 0.00 0.00 4.30
493 495 4.475135 GCTGAGTTCGCCCCCTCC 62.475 72.222 0.00 0.00 0.00 4.30
495 497 2.683933 TGAGTTCGCCCCCTCCTC 60.684 66.667 0.00 0.00 0.00 3.71
496 498 3.839432 GAGTTCGCCCCCTCCTCG 61.839 72.222 0.00 0.00 0.00 4.63
503 505 3.474570 CCCCCTCCTCGGCTCTTG 61.475 72.222 0.00 0.00 0.00 3.02
504 506 2.685380 CCCCTCCTCGGCTCTTGT 60.685 66.667 0.00 0.00 0.00 3.16
505 507 2.294078 CCCCTCCTCGGCTCTTGTT 61.294 63.158 0.00 0.00 0.00 2.83
506 508 1.219393 CCCTCCTCGGCTCTTGTTC 59.781 63.158 0.00 0.00 0.00 3.18
507 509 1.153745 CCTCCTCGGCTCTTGTTCG 60.154 63.158 0.00 0.00 0.00 3.95
508 510 1.587054 CTCCTCGGCTCTTGTTCGT 59.413 57.895 0.00 0.00 0.00 3.85
509 511 0.734253 CTCCTCGGCTCTTGTTCGTG 60.734 60.000 0.00 0.00 0.00 4.35
510 512 1.738099 CCTCGGCTCTTGTTCGTGG 60.738 63.158 0.00 0.00 0.00 4.94
511 513 2.357034 TCGGCTCTTGTTCGTGGC 60.357 61.111 0.00 0.00 0.00 5.01
512 514 3.423154 CGGCTCTTGTTCGTGGCC 61.423 66.667 0.00 0.00 39.43 5.36
513 515 2.281484 GGCTCTTGTTCGTGGCCA 60.281 61.111 0.00 0.00 42.08 5.36
514 516 1.675641 GGCTCTTGTTCGTGGCCAT 60.676 57.895 9.72 0.00 42.08 4.40
515 517 1.648467 GGCTCTTGTTCGTGGCCATC 61.648 60.000 9.72 1.29 42.08 3.51
516 518 0.955428 GCTCTTGTTCGTGGCCATCA 60.955 55.000 9.72 3.55 0.00 3.07
523 525 2.228582 TGTTCGTGGCCATCAGAAAATG 59.771 45.455 9.72 0.00 0.00 2.32
531 533 4.771577 TGGCCATCAGAAAATGTGTTGTAT 59.228 37.500 0.00 0.00 0.00 2.29
540 542 8.083462 TCAGAAAATGTGTTGTATACTGACGTA 58.917 33.333 4.17 0.00 0.00 3.57
545 547 8.766000 AATGTGTTGTATACTGACGTATTTCA 57.234 30.769 4.17 0.00 37.50 2.69
646 648 3.191371 GTGAACCAAGGAATTGCAGGTAG 59.809 47.826 13.12 0.00 31.10 3.18
653 655 2.441001 AGGAATTGCAGGTAGCTATGCT 59.559 45.455 17.80 0.91 45.94 3.79
655 657 3.251972 GGAATTGCAGGTAGCTATGCTTC 59.748 47.826 17.80 13.87 45.94 3.86
656 658 1.939974 TTGCAGGTAGCTATGCTTCG 58.060 50.000 17.80 0.00 45.94 3.79
659 661 1.861575 GCAGGTAGCTATGCTTCGTTC 59.138 52.381 11.33 0.00 40.44 3.95
660 662 2.482142 GCAGGTAGCTATGCTTCGTTCT 60.482 50.000 11.33 0.00 40.44 3.01
668 670 4.508124 AGCTATGCTTCGTTCTTTTATCCG 59.492 41.667 0.00 0.00 33.89 4.18
678 680 9.646336 CTTCGTTCTTTTATCCGGTTATTATTG 57.354 33.333 0.00 0.00 0.00 1.90
679 681 8.945481 TCGTTCTTTTATCCGGTTATTATTGA 57.055 30.769 0.00 0.00 0.00 2.57
719 1062 2.562635 CATCACTTGATGCCTGGAGAG 58.437 52.381 6.29 0.00 44.44 3.20
720 1063 1.942776 TCACTTGATGCCTGGAGAGA 58.057 50.000 0.00 0.00 0.00 3.10
923 1562 9.868277 TTCTGTTGTGAGATTGTTTTAAAATGT 57.132 25.926 3.52 0.00 0.00 2.71
977 1755 5.853936 TCGATTCTTATTTGACCCATCGAT 58.146 37.500 0.00 0.00 36.91 3.59
984 1762 0.526739 TTGACCCATCGATACGCACG 60.527 55.000 0.00 0.00 0.00 5.34
988 1766 0.039527 CCCATCGATACGCACGATCA 60.040 55.000 0.00 0.00 46.40 2.92
1052 2150 4.931601 GGAAAAATCAAAGGTGGATCTTGC 59.068 41.667 0.00 0.00 0.00 4.01
1073 2171 3.873801 GCCCAGCTGATAAACAAGAAGGA 60.874 47.826 17.39 0.00 0.00 3.36
1125 2223 0.333993 AAGGTGCTGATCTTGGGCAT 59.666 50.000 0.00 0.00 38.27 4.40
1138 2236 2.768253 TGGGCATACATCGATCATCC 57.232 50.000 0.00 0.00 0.00 3.51
1150 2248 1.472552 CGATCATCCGGGCAGTTTACA 60.473 52.381 0.00 0.00 0.00 2.41
1242 2389 9.273016 CCAGAAGACTTCATTCAAAGTTTAGTA 57.727 33.333 17.34 0.00 39.55 1.82
1249 2396 6.727824 TCATTCAAAGTTTAGTAGAGCAGC 57.272 37.500 0.00 0.00 0.00 5.25
1255 2402 3.839293 AGTTTAGTAGAGCAGCTTCACG 58.161 45.455 0.00 0.00 0.00 4.35
1260 2407 0.179100 TAGAGCAGCTTCACGCATCC 60.179 55.000 0.00 0.00 42.61 3.51
1262 2409 2.815211 GCAGCTTCACGCATCCGA 60.815 61.111 0.00 0.00 42.61 4.55
1330 2477 8.223330 AGTTAGCTGAGGAATTCAATGGATATT 58.777 33.333 7.93 0.00 34.81 1.28
1338 2485 8.258850 AGGAATTCAATGGATATTTCAATGCT 57.741 30.769 7.93 0.00 0.00 3.79
1443 2590 4.206244 AGGGAGCCTGATAATAGTGTCT 57.794 45.455 0.00 0.00 29.57 3.41
1496 2645 5.355350 GTGCAGGACAAGAAAGCATAGTATT 59.645 40.000 0.00 0.00 37.56 1.89
1568 2771 8.429641 TGAGAAGGTAACATTCAAAGTTCTACT 58.570 33.333 0.00 0.00 41.41 2.57
1575 2778 6.305693 ACATTCAAAGTTCTACTGCTTGTC 57.694 37.500 0.00 0.00 0.00 3.18
1583 2786 4.021544 AGTTCTACTGCTTGTCCTCTTCTG 60.022 45.833 0.00 0.00 0.00 3.02
1584 2787 3.767711 TCTACTGCTTGTCCTCTTCTGA 58.232 45.455 0.00 0.00 0.00 3.27
1585 2788 4.152647 TCTACTGCTTGTCCTCTTCTGAA 58.847 43.478 0.00 0.00 0.00 3.02
1586 2789 4.774726 TCTACTGCTTGTCCTCTTCTGAAT 59.225 41.667 0.00 0.00 0.00 2.57
1587 2790 4.363991 ACTGCTTGTCCTCTTCTGAATT 57.636 40.909 0.00 0.00 0.00 2.17
1588 2791 5.489792 ACTGCTTGTCCTCTTCTGAATTA 57.510 39.130 0.00 0.00 0.00 1.40
1589 2792 6.059787 ACTGCTTGTCCTCTTCTGAATTAT 57.940 37.500 0.00 0.00 0.00 1.28
1590 2793 7.187824 ACTGCTTGTCCTCTTCTGAATTATA 57.812 36.000 0.00 0.00 0.00 0.98
1591 2794 7.044798 ACTGCTTGTCCTCTTCTGAATTATAC 58.955 38.462 0.00 0.00 0.00 1.47
1592 2795 6.946340 TGCTTGTCCTCTTCTGAATTATACA 58.054 36.000 0.00 0.00 0.00 2.29
1593 2796 7.044181 TGCTTGTCCTCTTCTGAATTATACAG 58.956 38.462 0.00 0.00 36.80 2.74
1594 2797 6.018343 GCTTGTCCTCTTCTGAATTATACAGC 60.018 42.308 0.00 0.00 35.61 4.40
1595 2798 6.544928 TGTCCTCTTCTGAATTATACAGCA 57.455 37.500 0.00 0.00 35.61 4.41
1596 2799 6.946340 TGTCCTCTTCTGAATTATACAGCAA 58.054 36.000 0.00 0.00 35.61 3.91
1597 2800 7.044181 TGTCCTCTTCTGAATTATACAGCAAG 58.956 38.462 0.00 0.00 35.61 4.01
1598 2801 7.093333 TGTCCTCTTCTGAATTATACAGCAAGA 60.093 37.037 0.00 0.00 35.61 3.02
1599 2802 7.223777 GTCCTCTTCTGAATTATACAGCAAGAC 59.776 40.741 0.00 0.00 35.61 3.01
1600 2803 7.124901 TCCTCTTCTGAATTATACAGCAAGACT 59.875 37.037 0.00 0.00 35.61 3.24
1601 2804 7.437862 CCTCTTCTGAATTATACAGCAAGACTC 59.562 40.741 0.00 0.00 35.61 3.36
1602 2805 6.975197 TCTTCTGAATTATACAGCAAGACTCG 59.025 38.462 0.00 0.00 35.61 4.18
1603 2806 5.592054 TCTGAATTATACAGCAAGACTCGG 58.408 41.667 0.00 0.00 35.61 4.63
1604 2807 5.127194 TCTGAATTATACAGCAAGACTCGGT 59.873 40.000 0.00 0.00 35.61 4.69
1605 2808 5.730550 TGAATTATACAGCAAGACTCGGTT 58.269 37.500 0.00 0.00 0.00 4.44
1606 2809 6.869695 TGAATTATACAGCAAGACTCGGTTA 58.130 36.000 0.00 0.00 0.00 2.85
1607 2810 7.497595 TGAATTATACAGCAAGACTCGGTTAT 58.502 34.615 0.00 0.00 0.00 1.89
1608 2811 8.635328 TGAATTATACAGCAAGACTCGGTTATA 58.365 33.333 0.00 0.00 0.00 0.98
1609 2812 9.130312 GAATTATACAGCAAGACTCGGTTATAG 57.870 37.037 0.00 0.00 0.00 1.31
1610 2813 7.578310 TTATACAGCAAGACTCGGTTATAGT 57.422 36.000 0.00 0.00 0.00 2.12
1611 2814 4.111375 ACAGCAAGACTCGGTTATAGTG 57.889 45.455 0.00 0.00 0.00 2.74
1612 2815 3.510360 ACAGCAAGACTCGGTTATAGTGT 59.490 43.478 0.00 0.00 0.00 3.55
1613 2816 3.859961 CAGCAAGACTCGGTTATAGTGTG 59.140 47.826 0.00 0.00 0.00 3.82
1614 2817 3.119101 AGCAAGACTCGGTTATAGTGTGG 60.119 47.826 0.00 0.00 0.00 4.17
1615 2818 3.187700 CAAGACTCGGTTATAGTGTGGC 58.812 50.000 0.00 0.00 0.00 5.01
1616 2819 1.755380 AGACTCGGTTATAGTGTGGCC 59.245 52.381 0.00 0.00 0.00 5.36
1617 2820 1.755380 GACTCGGTTATAGTGTGGCCT 59.245 52.381 3.32 0.00 0.00 5.19
1618 2821 2.167900 GACTCGGTTATAGTGTGGCCTT 59.832 50.000 3.32 0.00 0.00 4.35
1619 2822 2.167900 ACTCGGTTATAGTGTGGCCTTC 59.832 50.000 3.32 0.00 0.00 3.46
1620 2823 1.135527 TCGGTTATAGTGTGGCCTTCG 59.864 52.381 3.32 0.00 0.00 3.79
1621 2824 1.135527 CGGTTATAGTGTGGCCTTCGA 59.864 52.381 3.32 0.00 0.00 3.71
1622 2825 2.417651 CGGTTATAGTGTGGCCTTCGAA 60.418 50.000 3.32 0.00 0.00 3.71
1623 2826 3.740141 CGGTTATAGTGTGGCCTTCGAAT 60.740 47.826 3.32 0.00 0.00 3.34
1624 2827 3.808174 GGTTATAGTGTGGCCTTCGAATC 59.192 47.826 3.32 0.00 0.00 2.52
1625 2828 4.439057 GTTATAGTGTGGCCTTCGAATCA 58.561 43.478 3.32 0.00 0.00 2.57
1626 2829 2.672961 TAGTGTGGCCTTCGAATCAG 57.327 50.000 3.32 0.00 0.00 2.90
1627 2830 0.976641 AGTGTGGCCTTCGAATCAGA 59.023 50.000 3.32 0.00 0.00 3.27
1628 2831 1.347707 AGTGTGGCCTTCGAATCAGAA 59.652 47.619 3.32 0.00 0.00 3.02
1629 2832 1.464997 GTGTGGCCTTCGAATCAGAAC 59.535 52.381 3.32 0.00 0.00 3.01
1630 2833 1.347707 TGTGGCCTTCGAATCAGAACT 59.652 47.619 3.32 0.00 0.00 3.01
1631 2834 2.565391 TGTGGCCTTCGAATCAGAACTA 59.435 45.455 3.32 0.00 0.00 2.24
1632 2835 2.930682 GTGGCCTTCGAATCAGAACTAC 59.069 50.000 3.32 0.00 0.00 2.73
1633 2836 2.565391 TGGCCTTCGAATCAGAACTACA 59.435 45.455 3.32 0.00 0.00 2.74
1634 2837 3.007506 TGGCCTTCGAATCAGAACTACAA 59.992 43.478 3.32 0.00 0.00 2.41
1635 2838 4.192317 GGCCTTCGAATCAGAACTACAAT 58.808 43.478 0.00 0.00 0.00 2.71
1636 2839 5.105106 TGGCCTTCGAATCAGAACTACAATA 60.105 40.000 3.32 0.00 0.00 1.90
1637 2840 5.992217 GGCCTTCGAATCAGAACTACAATAT 59.008 40.000 0.00 0.00 0.00 1.28
1638 2841 6.483640 GGCCTTCGAATCAGAACTACAATATT 59.516 38.462 0.00 0.00 0.00 1.28
1639 2842 7.348201 GCCTTCGAATCAGAACTACAATATTG 58.652 38.462 14.01 14.01 0.00 1.90
1640 2843 7.224753 GCCTTCGAATCAGAACTACAATATTGA 59.775 37.037 22.16 5.10 0.00 2.57
1641 2844 8.543774 CCTTCGAATCAGAACTACAATATTGAC 58.456 37.037 22.16 7.61 0.00 3.18
1642 2845 9.307121 CTTCGAATCAGAACTACAATATTGACT 57.693 33.333 22.16 3.12 0.00 3.41
1643 2846 9.653287 TTCGAATCAGAACTACAATATTGACTT 57.347 29.630 22.16 9.17 0.00 3.01
1644 2847 9.653287 TCGAATCAGAACTACAATATTGACTTT 57.347 29.630 22.16 10.51 0.00 2.66
1645 2848 9.694520 CGAATCAGAACTACAATATTGACTTTG 57.305 33.333 22.16 11.41 0.00 2.77
1653 2856 7.307493 CTACAATATTGACTTTGTAGCTGCA 57.693 36.000 22.16 0.00 44.72 4.41
1654 2857 6.764308 ACAATATTGACTTTGTAGCTGCAT 57.236 33.333 22.16 0.00 34.42 3.96
1655 2858 6.558009 ACAATATTGACTTTGTAGCTGCATG 58.442 36.000 22.16 4.58 34.42 4.06
1656 2859 5.762825 ATATTGACTTTGTAGCTGCATGG 57.237 39.130 4.98 4.20 0.00 3.66
1657 2860 2.566833 TGACTTTGTAGCTGCATGGT 57.433 45.000 4.98 7.58 0.00 3.55
1658 2861 2.153645 TGACTTTGTAGCTGCATGGTG 58.846 47.619 4.98 0.00 0.00 4.17
1659 2862 1.470098 GACTTTGTAGCTGCATGGTGG 59.530 52.381 4.98 0.00 0.00 4.61
1660 2863 0.813184 CTTTGTAGCTGCATGGTGGG 59.187 55.000 4.98 0.00 0.00 4.61
1661 2864 0.403655 TTTGTAGCTGCATGGTGGGA 59.596 50.000 4.98 0.00 0.00 4.37
1662 2865 0.403655 TTGTAGCTGCATGGTGGGAA 59.596 50.000 4.98 0.00 0.00 3.97
1663 2866 0.625316 TGTAGCTGCATGGTGGGAAT 59.375 50.000 0.00 0.00 0.00 3.01
1664 2867 1.312815 GTAGCTGCATGGTGGGAATC 58.687 55.000 1.02 0.00 0.00 2.52
1665 2868 0.918258 TAGCTGCATGGTGGGAATCA 59.082 50.000 1.02 0.00 0.00 2.57
1666 2869 0.395311 AGCTGCATGGTGGGAATCAG 60.395 55.000 1.02 0.00 0.00 2.90
1667 2870 0.682209 GCTGCATGGTGGGAATCAGT 60.682 55.000 0.00 0.00 0.00 3.41
1668 2871 1.843368 CTGCATGGTGGGAATCAGTT 58.157 50.000 0.00 0.00 0.00 3.16
1669 2872 2.173519 CTGCATGGTGGGAATCAGTTT 58.826 47.619 0.00 0.00 0.00 2.66
1670 2873 2.564062 CTGCATGGTGGGAATCAGTTTT 59.436 45.455 0.00 0.00 0.00 2.43
1671 2874 2.971330 TGCATGGTGGGAATCAGTTTTT 59.029 40.909 0.00 0.00 0.00 1.94
1672 2875 3.244146 TGCATGGTGGGAATCAGTTTTTG 60.244 43.478 0.00 0.00 0.00 2.44
1673 2876 3.244181 GCATGGTGGGAATCAGTTTTTGT 60.244 43.478 0.00 0.00 0.00 2.83
1674 2877 4.743348 GCATGGTGGGAATCAGTTTTTGTT 60.743 41.667 0.00 0.00 0.00 2.83
1675 2878 5.510520 GCATGGTGGGAATCAGTTTTTGTTA 60.511 40.000 0.00 0.00 0.00 2.41
1676 2879 6.700352 CATGGTGGGAATCAGTTTTTGTTAT 58.300 36.000 0.00 0.00 0.00 1.89
1677 2880 6.339587 TGGTGGGAATCAGTTTTTGTTATC 57.660 37.500 0.00 0.00 0.00 1.75
1678 2881 5.835819 TGGTGGGAATCAGTTTTTGTTATCA 59.164 36.000 0.00 0.00 0.00 2.15
1679 2882 6.156519 GGTGGGAATCAGTTTTTGTTATCAC 58.843 40.000 0.00 0.00 0.00 3.06
1680 2883 6.015434 GGTGGGAATCAGTTTTTGTTATCACT 60.015 38.462 0.00 0.00 0.00 3.41
1681 2884 6.863126 GTGGGAATCAGTTTTTGTTATCACTG 59.137 38.462 0.00 0.00 38.42 3.66
1688 2891 8.099364 TCAGTTTTTGTTATCACTGATCCTTC 57.901 34.615 0.00 0.00 40.56 3.46
1689 2892 7.174946 TCAGTTTTTGTTATCACTGATCCTTCC 59.825 37.037 0.00 0.00 40.56 3.46
1690 2893 7.004086 AGTTTTTGTTATCACTGATCCTTCCA 58.996 34.615 0.00 0.00 0.00 3.53
1691 2894 7.505585 AGTTTTTGTTATCACTGATCCTTCCAA 59.494 33.333 0.00 0.00 0.00 3.53
1692 2895 7.831691 TTTTGTTATCACTGATCCTTCCAAA 57.168 32.000 0.00 0.00 0.00 3.28
1693 2896 6.817765 TTGTTATCACTGATCCTTCCAAAC 57.182 37.500 0.00 0.00 0.00 2.93
1694 2897 6.126863 TGTTATCACTGATCCTTCCAAACT 57.873 37.500 0.00 0.00 0.00 2.66
1695 2898 5.939883 TGTTATCACTGATCCTTCCAAACTG 59.060 40.000 0.00 0.00 0.00 3.16
1696 2899 4.916041 ATCACTGATCCTTCCAAACTGA 57.084 40.909 0.00 0.00 0.00 3.41
1697 2900 4.705110 TCACTGATCCTTCCAAACTGAA 57.295 40.909 0.00 0.00 0.00 3.02
1698 2901 4.645535 TCACTGATCCTTCCAAACTGAAG 58.354 43.478 0.00 0.00 41.15 3.02
1699 2902 3.190118 CACTGATCCTTCCAAACTGAAGC 59.810 47.826 0.00 0.00 40.34 3.86
1700 2903 3.073650 ACTGATCCTTCCAAACTGAAGCT 59.926 43.478 0.00 0.00 40.34 3.74
1701 2904 4.077822 CTGATCCTTCCAAACTGAAGCTT 58.922 43.478 0.00 0.00 40.34 3.74
1702 2905 5.221925 ACTGATCCTTCCAAACTGAAGCTTA 60.222 40.000 0.00 0.00 40.34 3.09
1703 2906 5.248640 TGATCCTTCCAAACTGAAGCTTAG 58.751 41.667 0.00 0.00 40.34 2.18
1704 2907 4.974645 TCCTTCCAAACTGAAGCTTAGA 57.025 40.909 0.00 0.00 40.34 2.10
1705 2908 4.899502 TCCTTCCAAACTGAAGCTTAGAG 58.100 43.478 0.00 0.57 40.34 2.43
1706 2909 4.593206 TCCTTCCAAACTGAAGCTTAGAGA 59.407 41.667 0.00 0.00 40.34 3.10
1707 2910 4.934602 CCTTCCAAACTGAAGCTTAGAGAG 59.065 45.833 0.00 0.00 40.34 3.20
1708 2911 5.279708 CCTTCCAAACTGAAGCTTAGAGAGA 60.280 44.000 0.00 0.00 40.34 3.10
1709 2912 6.365970 TTCCAAACTGAAGCTTAGAGAGAT 57.634 37.500 0.00 0.00 0.00 2.75
1710 2913 5.971763 TCCAAACTGAAGCTTAGAGAGATC 58.028 41.667 0.00 0.00 0.00 2.75
1711 2914 5.481824 TCCAAACTGAAGCTTAGAGAGATCA 59.518 40.000 0.00 0.00 0.00 2.92
1712 2915 6.014242 TCCAAACTGAAGCTTAGAGAGATCAA 60.014 38.462 0.00 0.00 0.00 2.57
1713 2916 6.652481 CCAAACTGAAGCTTAGAGAGATCAAA 59.348 38.462 0.00 0.00 0.00 2.69
1714 2917 7.173907 CCAAACTGAAGCTTAGAGAGATCAAAA 59.826 37.037 0.00 0.00 0.00 2.44
1715 2918 8.728833 CAAACTGAAGCTTAGAGAGATCAAAAT 58.271 33.333 0.00 0.00 0.00 1.82
1716 2919 7.846644 ACTGAAGCTTAGAGAGATCAAAATG 57.153 36.000 0.00 0.00 0.00 2.32
1717 2920 7.393216 ACTGAAGCTTAGAGAGATCAAAATGT 58.607 34.615 0.00 0.00 0.00 2.71
1718 2921 7.882271 ACTGAAGCTTAGAGAGATCAAAATGTT 59.118 33.333 0.00 0.00 0.00 2.71
1719 2922 9.376075 CTGAAGCTTAGAGAGATCAAAATGTTA 57.624 33.333 0.00 0.00 0.00 2.41
1720 2923 9.155975 TGAAGCTTAGAGAGATCAAAATGTTAC 57.844 33.333 0.00 0.00 0.00 2.50
1721 2924 9.155975 GAAGCTTAGAGAGATCAAAATGTTACA 57.844 33.333 0.00 0.00 0.00 2.41
1722 2925 9.678260 AAGCTTAGAGAGATCAAAATGTTACAT 57.322 29.630 0.00 0.00 0.00 2.29
1723 2926 9.107177 AGCTTAGAGAGATCAAAATGTTACATG 57.893 33.333 0.00 0.00 0.00 3.21
1724 2927 7.854916 GCTTAGAGAGATCAAAATGTTACATGC 59.145 37.037 0.00 0.00 0.00 4.06
1725 2928 9.107177 CTTAGAGAGATCAAAATGTTACATGCT 57.893 33.333 0.00 0.00 0.00 3.79
1726 2929 7.317842 AGAGAGATCAAAATGTTACATGCTG 57.682 36.000 0.00 0.00 0.00 4.41
1727 2930 7.108194 AGAGAGATCAAAATGTTACATGCTGA 58.892 34.615 10.67 10.67 0.00 4.26
1728 2931 7.609146 AGAGAGATCAAAATGTTACATGCTGAA 59.391 33.333 11.84 0.23 0.00 3.02
1729 2932 7.533426 AGAGATCAAAATGTTACATGCTGAAC 58.467 34.615 11.84 9.96 0.00 3.18
1730 2933 6.317088 AGATCAAAATGTTACATGCTGAACG 58.683 36.000 11.84 0.00 0.00 3.95
1731 2934 4.793071 TCAAAATGTTACATGCTGAACGG 58.207 39.130 0.00 0.00 0.00 4.44
1732 2935 2.919666 AATGTTACATGCTGAACGGC 57.080 45.000 0.00 0.00 0.00 5.68
1733 2936 1.094785 ATGTTACATGCTGAACGGCC 58.905 50.000 0.00 0.00 0.00 6.13
1734 2937 0.250510 TGTTACATGCTGAACGGCCA 60.251 50.000 2.24 0.00 0.00 5.36
1735 2938 0.447801 GTTACATGCTGAACGGCCAG 59.552 55.000 2.24 0.00 37.23 4.85
1736 2939 0.676466 TTACATGCTGAACGGCCAGG 60.676 55.000 2.24 0.00 34.82 4.45
1737 2940 1.549243 TACATGCTGAACGGCCAGGA 61.549 55.000 2.24 5.84 38.83 3.86
1738 2941 2.110967 CATGCTGAACGGCCAGGAG 61.111 63.158 2.24 0.00 37.90 3.69
1739 2942 2.596851 ATGCTGAACGGCCAGGAGT 61.597 57.895 2.24 0.00 37.90 3.85
1740 2943 2.743928 GCTGAACGGCCAGGAGTG 60.744 66.667 2.24 0.00 34.82 3.51
1741 2944 3.059982 CTGAACGGCCAGGAGTGA 58.940 61.111 2.24 0.00 0.00 3.41
1742 2945 1.371183 CTGAACGGCCAGGAGTGAA 59.629 57.895 2.24 0.00 0.00 3.18
1743 2946 0.951040 CTGAACGGCCAGGAGTGAAC 60.951 60.000 2.24 0.00 0.00 3.18
1744 2947 1.371558 GAACGGCCAGGAGTGAACT 59.628 57.895 2.24 0.00 0.00 3.01
1745 2948 0.606604 GAACGGCCAGGAGTGAACTA 59.393 55.000 2.24 0.00 0.00 2.24
1746 2949 0.320697 AACGGCCAGGAGTGAACTAC 59.679 55.000 2.24 0.00 0.00 2.73
1747 2950 0.542232 ACGGCCAGGAGTGAACTACT 60.542 55.000 2.24 0.00 44.02 2.57
1757 2960 3.919223 AGTGAACTACTCAAGTCGTCC 57.081 47.619 0.00 0.00 37.50 4.79
1758 2961 2.225963 AGTGAACTACTCAAGTCGTCCG 59.774 50.000 0.00 0.00 37.50 4.79
1759 2962 2.225019 GTGAACTACTCAAGTCGTCCGA 59.775 50.000 0.00 0.00 37.50 4.55
1760 2963 2.225019 TGAACTACTCAAGTCGTCCGAC 59.775 50.000 11.70 11.70 44.86 4.79
1761 2964 1.888215 ACTACTCAAGTCGTCCGACA 58.112 50.000 20.57 0.82 46.76 4.35
1762 2965 1.805345 ACTACTCAAGTCGTCCGACAG 59.195 52.381 20.57 12.17 46.76 3.51
1763 2966 1.805345 CTACTCAAGTCGTCCGACAGT 59.195 52.381 20.57 16.63 46.76 3.55
1764 2967 0.311165 ACTCAAGTCGTCCGACAGTG 59.689 55.000 20.57 16.89 46.76 3.66
1771 2974 2.049433 GTCCGACAGTGTCCCACG 60.049 66.667 17.57 6.41 39.64 4.94
1806 3009 1.231641 CTCCTCCCGGATCAGACCT 59.768 63.158 0.73 0.00 39.01 3.85
1818 3021 2.122056 AGACCTAACCCCCGCACT 59.878 61.111 0.00 0.00 0.00 4.40
1821 3024 0.974525 GACCTAACCCCCGCACTACT 60.975 60.000 0.00 0.00 0.00 2.57
1883 3086 1.139654 CCCATTGCCTTCTCGAGATCA 59.860 52.381 17.44 11.79 0.00 2.92
1897 3109 2.229792 GAGATCAACAACCACCTGCAA 58.770 47.619 0.00 0.00 0.00 4.08
1899 3111 2.158623 AGATCAACAACCACCTGCAAGA 60.159 45.455 0.00 0.00 34.07 3.02
1977 3189 4.916983 TGTTCCTTTGGTGTTTCATCTG 57.083 40.909 0.00 0.00 0.00 2.90
2074 3286 2.437651 GAGAATGGGGAGAAAGAGGAGG 59.562 54.545 0.00 0.00 0.00 4.30
2075 3287 2.046447 AGAATGGGGAGAAAGAGGAGGA 59.954 50.000 0.00 0.00 0.00 3.71
2076 3288 2.188818 ATGGGGAGAAAGAGGAGGAG 57.811 55.000 0.00 0.00 0.00 3.69
2088 3300 1.902508 GAGGAGGAGATGTGGTTGTCA 59.097 52.381 0.00 0.00 0.00 3.58
2097 3309 1.817941 GTGGTTGTCAGCACGGTGT 60.818 57.895 10.24 0.00 41.42 4.16
2126 3338 2.576847 CGCGGCGGAAAAATGAGC 60.577 61.111 15.84 0.00 0.00 4.26
2133 3345 2.610232 GGCGGAAAAATGAGCATGTGTT 60.610 45.455 0.00 0.00 0.00 3.32
2150 3362 1.699083 TGTTGTGCAAGAGGAGATCCA 59.301 47.619 0.92 0.00 38.89 3.41
2151 3363 2.079925 GTTGTGCAAGAGGAGATCCAC 58.920 52.381 0.92 0.00 38.89 4.02
2152 3364 1.351076 TGTGCAAGAGGAGATCCACA 58.649 50.000 0.92 0.00 38.89 4.17
2161 3373 1.297689 GAGATCCACACTGCCAGCA 59.702 57.895 0.00 0.00 0.00 4.41
2239 3451 2.744202 GTGACGGCAATTGTCATCTTCT 59.256 45.455 11.22 0.00 46.98 2.85
2270 3482 5.909621 AGATGGACATTTGGATGTTCTTG 57.090 39.130 0.08 0.00 46.27 3.02
2326 3540 6.016276 TCAGCTTCTTTCTTGGGTAATCAAAC 60.016 38.462 0.00 0.00 0.00 2.93
2329 3543 6.570571 GCTTCTTTCTTGGGTAATCAAACTCC 60.571 42.308 0.00 0.00 0.00 3.85
2348 3563 8.985805 CAAACTCCGGTGGAATAATAGTATAAC 58.014 37.037 8.63 0.00 0.00 1.89
2350 3565 8.120140 ACTCCGGTGGAATAATAGTATAACTC 57.880 38.462 8.63 0.00 0.00 3.01
2371 3588 6.319399 ACTCGTGTTTTTGTTTTAGGTCTTG 58.681 36.000 0.00 0.00 0.00 3.02
2432 3649 7.915293 TGAACATTCATTAGGTGTTTATCGT 57.085 32.000 0.00 0.00 36.30 3.73
2440 3657 6.320418 TCATTAGGTGTTTATCGTCTAGCTGA 59.680 38.462 0.00 0.00 0.00 4.26
2459 3676 4.378774 CTGAGGAGGCTATGAACAATCTG 58.621 47.826 0.00 0.00 0.00 2.90
2518 3736 6.506538 AGAAATGCTATACATGTTCTCCCT 57.493 37.500 2.30 0.00 39.60 4.20
2545 3764 5.888724 TGTTCTTTTGGTAATCCACTTCACA 59.111 36.000 0.00 0.00 44.22 3.58
2559 3778 5.008613 TCCACTTCACAACTGACTAAATTGC 59.991 40.000 0.00 0.00 0.00 3.56
2561 3780 5.682862 CACTTCACAACTGACTAAATTGCAC 59.317 40.000 0.00 0.00 0.00 4.57
2581 3800 0.251354 CACTGCCTGACCTGTGCTAT 59.749 55.000 0.00 0.00 0.00 2.97
2584 3803 1.482182 CTGCCTGACCTGTGCTATGTA 59.518 52.381 0.00 0.00 0.00 2.29
2596 3815 6.057533 CCTGTGCTATGTATGAATTTGAGGA 58.942 40.000 0.00 0.00 0.00 3.71
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
53 54 0.458025 GTCGAAAGTCGCCGGAGAAT 60.458 55.000 10.32 5.68 40.21 2.40
68 69 4.961511 GGTGCTGCGTGGTGTCGA 62.962 66.667 0.00 0.00 0.00 4.20
159 160 2.789409 AGACATGGTGAGGGCTTAAC 57.211 50.000 0.00 0.00 0.00 2.01
176 177 3.777910 GGCGCCCGAAACCCTAGA 61.778 66.667 18.11 0.00 0.00 2.43
227 228 2.123251 ATGGGCGTCGGAGAGGAT 60.123 61.111 0.00 0.00 46.48 3.24
257 258 1.690219 ATCCTGGACACGGAGATGCC 61.690 60.000 0.00 0.00 33.29 4.40
261 262 1.305297 AGCATCCTGGACACGGAGA 60.305 57.895 0.00 0.00 33.29 3.71
293 295 1.379044 GAACTCACCCCATGGCCAG 60.379 63.158 13.05 3.10 33.59 4.85
315 317 0.868186 GGGGGAGAGATAGGGGAGAA 59.132 60.000 0.00 0.00 0.00 2.87
316 318 2.582776 GGGGGAGAGATAGGGGAGA 58.417 63.158 0.00 0.00 0.00 3.71
342 344 5.363939 GAGGATCAAACCAGACATTAGAGG 58.636 45.833 0.00 0.00 33.17 3.69
350 352 2.025887 ACCATGGAGGATCAAACCAGAC 60.026 50.000 21.47 0.00 41.22 3.51
418 420 1.372997 CAAGCTGCAGCAAGGCAAG 60.373 57.895 38.24 16.38 44.40 4.01
462 464 4.803088 CGAACTCAGCTGAAGATAGAAAGG 59.197 45.833 18.85 4.29 0.00 3.11
463 465 4.267452 GCGAACTCAGCTGAAGATAGAAAG 59.733 45.833 18.85 5.06 0.00 2.62
464 466 4.177026 GCGAACTCAGCTGAAGATAGAAA 58.823 43.478 18.85 0.00 0.00 2.52
465 467 3.429547 GGCGAACTCAGCTGAAGATAGAA 60.430 47.826 18.85 0.00 34.52 2.10
467 469 2.468831 GGCGAACTCAGCTGAAGATAG 58.531 52.381 18.85 8.15 34.52 2.08
468 470 1.137086 GGGCGAACTCAGCTGAAGATA 59.863 52.381 18.85 0.00 34.52 1.98
469 471 0.107945 GGGCGAACTCAGCTGAAGAT 60.108 55.000 18.85 6.57 34.52 2.40
470 472 1.293498 GGGCGAACTCAGCTGAAGA 59.707 57.895 18.85 0.00 34.52 2.87
471 473 1.743252 GGGGCGAACTCAGCTGAAG 60.743 63.158 18.85 13.95 34.52 3.02
472 474 2.347490 GGGGCGAACTCAGCTGAA 59.653 61.111 18.85 1.63 34.52 3.02
473 475 3.706373 GGGGGCGAACTCAGCTGA 61.706 66.667 17.19 17.19 34.52 4.26
474 476 3.672295 GAGGGGGCGAACTCAGCTG 62.672 68.421 7.63 7.63 33.95 4.24
475 477 3.394836 GAGGGGGCGAACTCAGCT 61.395 66.667 0.00 0.00 33.95 4.24
476 478 4.475135 GGAGGGGGCGAACTCAGC 62.475 72.222 0.00 0.00 35.45 4.26
477 479 2.685380 AGGAGGGGGCGAACTCAG 60.685 66.667 0.00 0.00 35.45 3.35
478 480 2.683933 GAGGAGGGGGCGAACTCA 60.684 66.667 0.00 0.00 35.45 3.41
479 481 3.839432 CGAGGAGGGGGCGAACTC 61.839 72.222 0.00 0.00 0.00 3.01
486 488 3.474570 CAAGAGCCGAGGAGGGGG 61.475 72.222 0.00 0.00 41.48 5.40
487 489 2.245438 GAACAAGAGCCGAGGAGGGG 62.245 65.000 0.00 0.00 41.48 4.79
488 490 1.219393 GAACAAGAGCCGAGGAGGG 59.781 63.158 0.00 0.00 41.48 4.30
490 492 0.734253 CACGAACAAGAGCCGAGGAG 60.734 60.000 0.00 0.00 0.00 3.69
491 493 1.289066 CACGAACAAGAGCCGAGGA 59.711 57.895 0.00 0.00 0.00 3.71
492 494 1.738099 CCACGAACAAGAGCCGAGG 60.738 63.158 0.00 0.00 0.00 4.63
493 495 2.383527 GCCACGAACAAGAGCCGAG 61.384 63.158 0.00 0.00 0.00 4.63
495 497 3.423154 GGCCACGAACAAGAGCCG 61.423 66.667 0.00 0.00 33.18 5.52
496 498 1.648467 GATGGCCACGAACAAGAGCC 61.648 60.000 8.16 0.00 44.13 4.70
497 499 0.955428 TGATGGCCACGAACAAGAGC 60.955 55.000 8.16 0.00 0.00 4.09
498 500 1.081892 CTGATGGCCACGAACAAGAG 58.918 55.000 8.16 0.00 0.00 2.85
500 502 1.522668 TTCTGATGGCCACGAACAAG 58.477 50.000 8.16 0.00 0.00 3.16
501 503 1.974265 TTTCTGATGGCCACGAACAA 58.026 45.000 8.16 0.00 0.00 2.83
502 504 1.974265 TTTTCTGATGGCCACGAACA 58.026 45.000 8.16 5.53 0.00 3.18
503 505 2.228822 ACATTTTCTGATGGCCACGAAC 59.771 45.455 8.16 0.08 0.00 3.95
504 506 2.228582 CACATTTTCTGATGGCCACGAA 59.771 45.455 8.16 8.88 0.00 3.85
505 507 1.811965 CACATTTTCTGATGGCCACGA 59.188 47.619 8.16 1.49 0.00 4.35
506 508 1.541147 ACACATTTTCTGATGGCCACG 59.459 47.619 8.16 0.00 0.00 4.94
507 509 3.243839 ACAACACATTTTCTGATGGCCAC 60.244 43.478 8.16 2.36 0.00 5.01
508 510 2.964464 ACAACACATTTTCTGATGGCCA 59.036 40.909 8.56 8.56 0.00 5.36
509 511 3.665745 ACAACACATTTTCTGATGGCC 57.334 42.857 0.00 0.00 0.00 5.36
510 512 6.968904 CAGTATACAACACATTTTCTGATGGC 59.031 38.462 5.50 0.00 0.00 4.40
511 513 8.177663 GTCAGTATACAACACATTTTCTGATGG 58.822 37.037 5.50 0.00 33.22 3.51
512 514 7.899841 CGTCAGTATACAACACATTTTCTGATG 59.100 37.037 5.50 0.00 33.22 3.07
513 515 7.602644 ACGTCAGTATACAACACATTTTCTGAT 59.397 33.333 5.50 0.00 33.22 2.90
514 516 6.926826 ACGTCAGTATACAACACATTTTCTGA 59.073 34.615 5.50 0.00 0.00 3.27
515 517 7.117241 ACGTCAGTATACAACACATTTTCTG 57.883 36.000 5.50 0.00 0.00 3.02
516 518 8.997621 ATACGTCAGTATACAACACATTTTCT 57.002 30.769 5.50 0.00 41.45 2.52
523 525 8.706035 AGTTTGAAATACGTCAGTATACAACAC 58.294 33.333 5.50 0.00 42.35 3.32
531 533 8.199176 TGTTTTCAGTTTGAAATACGTCAGTA 57.801 30.769 5.20 0.00 44.75 2.74
540 542 6.258507 GGCACTCATTGTTTTCAGTTTGAAAT 59.741 34.615 5.20 0.00 44.75 2.17
545 547 4.734398 TGGCACTCATTGTTTTCAGTTT 57.266 36.364 0.00 0.00 0.00 2.66
554 556 5.012239 ACATCTTGTATTGGCACTCATTGT 58.988 37.500 0.00 0.00 0.00 2.71
646 648 4.318831 CCGGATAAAAGAACGAAGCATAGC 60.319 45.833 0.00 0.00 0.00 2.97
653 655 9.381033 TCAATAATAACCGGATAAAAGAACGAA 57.619 29.630 9.46 0.00 0.00 3.85
668 670 9.313118 GGACCACAAATTCATTCAATAATAACC 57.687 33.333 0.00 0.00 0.00 2.85
678 680 5.957842 TGTACAGGACCACAAATTCATTC 57.042 39.130 0.00 0.00 0.00 2.67
679 681 6.009589 TGATGTACAGGACCACAAATTCATT 58.990 36.000 0.33 0.00 0.00 2.57
683 687 4.985538 AGTGATGTACAGGACCACAAATT 58.014 39.130 17.09 1.20 0.00 1.82
796 1413 6.666678 ACAGGAACATGATTTGTATCCATCT 58.333 36.000 0.00 0.00 37.68 2.90
799 1416 6.069673 ACCTACAGGAACATGATTTGTATCCA 60.070 38.462 0.00 0.00 37.68 3.41
800 1417 6.260936 CACCTACAGGAACATGATTTGTATCC 59.739 42.308 0.00 0.00 36.64 2.59
801 1418 7.047891 TCACCTACAGGAACATGATTTGTATC 58.952 38.462 0.00 0.00 36.64 2.24
820 1459 8.276252 GGTGATTACTTTGCTTATTTCACCTA 57.724 34.615 10.65 0.00 45.31 3.08
923 1562 3.439825 TGTTGCTCGTACGTCCATTACTA 59.560 43.478 16.05 0.00 0.00 1.82
925 1564 2.598589 TGTTGCTCGTACGTCCATTAC 58.401 47.619 16.05 9.76 0.00 1.89
936 1575 5.991328 ATCGAATAATCAATGTTGCTCGT 57.009 34.783 0.00 0.00 0.00 4.18
937 1576 6.653183 AGAATCGAATAATCAATGTTGCTCG 58.347 36.000 0.00 0.00 0.00 5.03
969 1747 0.039527 TGATCGTGCGTATCGATGGG 60.040 55.000 8.54 0.25 45.90 4.00
977 1755 1.166989 TGTACCTGTGATCGTGCGTA 58.833 50.000 0.00 0.00 0.00 4.42
984 1762 4.379813 CCAAGCATTGTTGTACCTGTGATC 60.380 45.833 0.00 0.00 46.99 2.92
988 1766 1.613437 GCCAAGCATTGTTGTACCTGT 59.387 47.619 0.00 0.00 46.99 4.00
1052 2150 3.691609 GTCCTTCTTGTTTATCAGCTGGG 59.308 47.826 15.13 2.19 0.00 4.45
1073 2171 1.652947 AATCACCCTTAGGTCGGTGT 58.347 50.000 6.15 0.00 46.45 4.16
1125 2223 0.603065 CTGCCCGGATGATCGATGTA 59.397 55.000 0.54 0.00 0.00 2.29
1138 2236 1.339631 TGGATCCTTGTAAACTGCCCG 60.340 52.381 14.23 0.00 0.00 6.13
1150 2248 7.787623 AATTGTTTTTGATCTCTGGATCCTT 57.212 32.000 14.23 0.00 45.62 3.36
1249 2396 0.108615 ACTCCTTCGGATGCGTGAAG 60.109 55.000 6.49 3.71 40.97 3.02
1255 2402 2.029838 ATGTCAACTCCTTCGGATGC 57.970 50.000 0.00 0.00 0.00 3.91
1260 2407 2.414481 CAGCAGAATGTCAACTCCTTCG 59.586 50.000 0.00 0.00 39.31 3.79
1262 2409 2.373169 TCCAGCAGAATGTCAACTCCTT 59.627 45.455 0.00 0.00 39.31 3.36
1266 2413 3.554934 TGTTTCCAGCAGAATGTCAACT 58.445 40.909 0.00 0.00 39.31 3.16
1300 2447 6.376581 CCATTGAATTCCTCAGCTAACTCTTT 59.623 38.462 2.27 0.00 34.81 2.52
1330 2477 6.716628 ACAATCAGGAACTTCTTAGCATTGAA 59.283 34.615 0.00 0.00 34.60 2.69
1338 2485 7.882791 TCATTAAGCACAATCAGGAACTTCTTA 59.117 33.333 0.00 0.00 34.60 2.10
1443 2590 3.020274 TGCAACTTCAACTTGCCTTGTA 58.980 40.909 0.00 0.00 42.91 2.41
1496 2645 0.676184 AGACGACTGCTTGAGCTCAA 59.324 50.000 26.87 26.87 42.66 3.02
1531 2734 8.814038 AATGTTACCTTCTCATAGAAAGCATT 57.186 30.769 0.00 0.00 33.19 3.56
1568 2771 6.946340 TGTATAATTCAGAAGAGGACAAGCA 58.054 36.000 0.00 0.00 0.00 3.91
1575 2778 7.271511 AGTCTTGCTGTATAATTCAGAAGAGG 58.728 38.462 0.00 0.00 33.94 3.69
1583 2786 7.948278 ATAACCGAGTCTTGCTGTATAATTC 57.052 36.000 0.00 0.00 0.00 2.17
1584 2787 8.639761 ACTATAACCGAGTCTTGCTGTATAATT 58.360 33.333 0.00 0.00 0.00 1.40
1585 2788 8.082852 CACTATAACCGAGTCTTGCTGTATAAT 58.917 37.037 0.00 0.00 0.00 1.28
1586 2789 7.067859 ACACTATAACCGAGTCTTGCTGTATAA 59.932 37.037 0.00 0.00 0.00 0.98
1587 2790 6.544931 ACACTATAACCGAGTCTTGCTGTATA 59.455 38.462 0.00 0.00 0.00 1.47
1588 2791 5.360144 ACACTATAACCGAGTCTTGCTGTAT 59.640 40.000 0.00 0.00 0.00 2.29
1589 2792 4.703575 ACACTATAACCGAGTCTTGCTGTA 59.296 41.667 0.00 0.00 0.00 2.74
1590 2793 3.510360 ACACTATAACCGAGTCTTGCTGT 59.490 43.478 0.00 0.00 0.00 4.40
1591 2794 3.859961 CACACTATAACCGAGTCTTGCTG 59.140 47.826 0.00 0.00 0.00 4.41
1592 2795 3.119101 CCACACTATAACCGAGTCTTGCT 60.119 47.826 0.00 0.00 0.00 3.91
1593 2796 3.187700 CCACACTATAACCGAGTCTTGC 58.812 50.000 0.00 0.00 0.00 4.01
1594 2797 3.187700 GCCACACTATAACCGAGTCTTG 58.812 50.000 0.00 0.00 0.00 3.02
1595 2798 2.167900 GGCCACACTATAACCGAGTCTT 59.832 50.000 0.00 0.00 0.00 3.01
1596 2799 1.755380 GGCCACACTATAACCGAGTCT 59.245 52.381 0.00 0.00 0.00 3.24
1597 2800 1.755380 AGGCCACACTATAACCGAGTC 59.245 52.381 5.01 0.00 0.00 3.36
1598 2801 1.861982 AGGCCACACTATAACCGAGT 58.138 50.000 5.01 0.00 0.00 4.18
1599 2802 2.798499 CGAAGGCCACACTATAACCGAG 60.798 54.545 5.01 0.00 0.00 4.63
1600 2803 1.135527 CGAAGGCCACACTATAACCGA 59.864 52.381 5.01 0.00 0.00 4.69
1601 2804 1.135527 TCGAAGGCCACACTATAACCG 59.864 52.381 5.01 0.00 0.00 4.44
1602 2805 2.973694 TCGAAGGCCACACTATAACC 57.026 50.000 5.01 0.00 0.00 2.85
1603 2806 4.439057 TGATTCGAAGGCCACACTATAAC 58.561 43.478 5.01 0.00 0.00 1.89
1604 2807 4.404394 TCTGATTCGAAGGCCACACTATAA 59.596 41.667 5.01 0.00 0.00 0.98
1605 2808 3.958147 TCTGATTCGAAGGCCACACTATA 59.042 43.478 5.01 0.00 0.00 1.31
1606 2809 2.766263 TCTGATTCGAAGGCCACACTAT 59.234 45.455 5.01 0.00 0.00 2.12
1607 2810 2.176045 TCTGATTCGAAGGCCACACTA 58.824 47.619 5.01 0.00 0.00 2.74
1608 2811 0.976641 TCTGATTCGAAGGCCACACT 59.023 50.000 5.01 0.00 0.00 3.55
1609 2812 1.464997 GTTCTGATTCGAAGGCCACAC 59.535 52.381 5.01 0.00 0.00 3.82
1610 2813 1.347707 AGTTCTGATTCGAAGGCCACA 59.652 47.619 5.01 0.00 0.00 4.17
1611 2814 2.100605 AGTTCTGATTCGAAGGCCAC 57.899 50.000 5.01 0.00 0.00 5.01
1612 2815 2.565391 TGTAGTTCTGATTCGAAGGCCA 59.435 45.455 5.01 0.81 0.00 5.36
1613 2816 3.247006 TGTAGTTCTGATTCGAAGGCC 57.753 47.619 3.35 0.00 0.00 5.19
1614 2817 7.224753 TCAATATTGTAGTTCTGATTCGAAGGC 59.775 37.037 14.97 0.00 0.00 4.35
1615 2818 8.543774 GTCAATATTGTAGTTCTGATTCGAAGG 58.456 37.037 14.97 0.00 0.00 3.46
1616 2819 9.307121 AGTCAATATTGTAGTTCTGATTCGAAG 57.693 33.333 14.97 0.00 0.00 3.79
1617 2820 9.653287 AAGTCAATATTGTAGTTCTGATTCGAA 57.347 29.630 14.97 0.00 0.00 3.71
1618 2821 9.653287 AAAGTCAATATTGTAGTTCTGATTCGA 57.347 29.630 14.97 0.00 0.00 3.71
1619 2822 9.694520 CAAAGTCAATATTGTAGTTCTGATTCG 57.305 33.333 14.97 0.00 0.00 3.34
1630 2833 7.201723 CCATGCAGCTACAAAGTCAATATTGTA 60.202 37.037 14.97 0.16 40.14 2.41
1631 2834 6.405065 CCATGCAGCTACAAAGTCAATATTGT 60.405 38.462 14.97 0.00 42.16 2.71
1632 2835 5.975344 CCATGCAGCTACAAAGTCAATATTG 59.025 40.000 9.29 9.29 0.00 1.90
1633 2836 5.653769 ACCATGCAGCTACAAAGTCAATATT 59.346 36.000 0.00 0.00 0.00 1.28
1634 2837 5.066893 CACCATGCAGCTACAAAGTCAATAT 59.933 40.000 0.00 0.00 0.00 1.28
1635 2838 4.395854 CACCATGCAGCTACAAAGTCAATA 59.604 41.667 0.00 0.00 0.00 1.90
1636 2839 3.192001 CACCATGCAGCTACAAAGTCAAT 59.808 43.478 0.00 0.00 0.00 2.57
1637 2840 2.553602 CACCATGCAGCTACAAAGTCAA 59.446 45.455 0.00 0.00 0.00 3.18
1638 2841 2.153645 CACCATGCAGCTACAAAGTCA 58.846 47.619 0.00 0.00 0.00 3.41
1639 2842 1.470098 CCACCATGCAGCTACAAAGTC 59.530 52.381 0.00 0.00 0.00 3.01
1640 2843 1.538047 CCACCATGCAGCTACAAAGT 58.462 50.000 0.00 0.00 0.00 2.66
1641 2844 0.813184 CCCACCATGCAGCTACAAAG 59.187 55.000 0.00 0.00 0.00 2.77
1642 2845 0.403655 TCCCACCATGCAGCTACAAA 59.596 50.000 0.00 0.00 0.00 2.83
1643 2846 0.403655 TTCCCACCATGCAGCTACAA 59.596 50.000 0.00 0.00 0.00 2.41
1644 2847 0.625316 ATTCCCACCATGCAGCTACA 59.375 50.000 0.00 0.00 0.00 2.74
1645 2848 1.312815 GATTCCCACCATGCAGCTAC 58.687 55.000 0.00 0.00 0.00 3.58
1646 2849 0.918258 TGATTCCCACCATGCAGCTA 59.082 50.000 0.00 0.00 0.00 3.32
1647 2850 0.395311 CTGATTCCCACCATGCAGCT 60.395 55.000 0.00 0.00 0.00 4.24
1648 2851 0.682209 ACTGATTCCCACCATGCAGC 60.682 55.000 0.00 0.00 0.00 5.25
1649 2852 1.843368 AACTGATTCCCACCATGCAG 58.157 50.000 0.00 0.00 0.00 4.41
1650 2853 2.307496 AAACTGATTCCCACCATGCA 57.693 45.000 0.00 0.00 0.00 3.96
1651 2854 3.244181 ACAAAAACTGATTCCCACCATGC 60.244 43.478 0.00 0.00 0.00 4.06
1652 2855 4.605640 ACAAAAACTGATTCCCACCATG 57.394 40.909 0.00 0.00 0.00 3.66
1653 2856 6.496565 TGATAACAAAAACTGATTCCCACCAT 59.503 34.615 0.00 0.00 0.00 3.55
1654 2857 5.835819 TGATAACAAAAACTGATTCCCACCA 59.164 36.000 0.00 0.00 0.00 4.17
1655 2858 6.015434 AGTGATAACAAAAACTGATTCCCACC 60.015 38.462 0.00 0.00 0.00 4.61
1656 2859 6.863126 CAGTGATAACAAAAACTGATTCCCAC 59.137 38.462 0.00 0.00 42.09 4.61
1657 2860 6.775142 TCAGTGATAACAAAAACTGATTCCCA 59.225 34.615 0.40 0.00 43.01 4.37
1658 2861 7.214467 TCAGTGATAACAAAAACTGATTCCC 57.786 36.000 0.40 0.00 43.01 3.97
1664 2867 7.040478 TGGAAGGATCAGTGATAACAAAAACTG 60.040 37.037 5.38 0.00 41.11 3.16
1665 2868 7.004086 TGGAAGGATCAGTGATAACAAAAACT 58.996 34.615 5.38 0.00 0.00 2.66
1666 2869 7.214467 TGGAAGGATCAGTGATAACAAAAAC 57.786 36.000 5.38 0.00 0.00 2.43
1667 2870 7.831691 TTGGAAGGATCAGTGATAACAAAAA 57.168 32.000 5.38 0.00 0.00 1.94
1668 2871 7.505585 AGTTTGGAAGGATCAGTGATAACAAAA 59.494 33.333 5.38 1.92 0.00 2.44
1669 2872 7.004086 AGTTTGGAAGGATCAGTGATAACAAA 58.996 34.615 5.38 10.04 0.00 2.83
1670 2873 6.430925 CAGTTTGGAAGGATCAGTGATAACAA 59.569 38.462 5.38 4.72 0.00 2.83
1671 2874 5.939883 CAGTTTGGAAGGATCAGTGATAACA 59.060 40.000 5.38 0.00 0.00 2.41
1672 2875 6.173339 TCAGTTTGGAAGGATCAGTGATAAC 58.827 40.000 5.38 5.17 0.00 1.89
1673 2876 6.373005 TCAGTTTGGAAGGATCAGTGATAA 57.627 37.500 5.38 0.00 0.00 1.75
1674 2877 6.373005 TTCAGTTTGGAAGGATCAGTGATA 57.627 37.500 5.38 0.00 0.00 2.15
1675 2878 4.916041 TCAGTTTGGAAGGATCAGTGAT 57.084 40.909 4.98 4.98 0.00 3.06
1676 2879 4.645535 CTTCAGTTTGGAAGGATCAGTGA 58.354 43.478 0.00 0.00 40.44 3.41
1677 2880 3.190118 GCTTCAGTTTGGAAGGATCAGTG 59.810 47.826 5.22 0.00 43.54 3.66
1678 2881 3.073650 AGCTTCAGTTTGGAAGGATCAGT 59.926 43.478 5.22 0.00 43.54 3.41
1679 2882 3.683802 AGCTTCAGTTTGGAAGGATCAG 58.316 45.455 5.22 0.00 43.54 2.90
1680 2883 3.795688 AGCTTCAGTTTGGAAGGATCA 57.204 42.857 5.22 0.00 43.54 2.92
1681 2884 5.491982 TCTAAGCTTCAGTTTGGAAGGATC 58.508 41.667 0.00 0.00 43.54 3.36
1682 2885 5.249393 TCTCTAAGCTTCAGTTTGGAAGGAT 59.751 40.000 0.00 0.00 43.54 3.24
1683 2886 4.593206 TCTCTAAGCTTCAGTTTGGAAGGA 59.407 41.667 0.00 0.00 43.54 3.36
1684 2887 4.899502 TCTCTAAGCTTCAGTTTGGAAGG 58.100 43.478 0.00 0.00 43.54 3.46
1685 2888 5.788450 TCTCTCTAAGCTTCAGTTTGGAAG 58.212 41.667 0.00 0.00 45.58 3.46
1686 2889 5.808366 TCTCTCTAAGCTTCAGTTTGGAA 57.192 39.130 0.00 0.00 0.00 3.53
1687 2890 5.481824 TGATCTCTCTAAGCTTCAGTTTGGA 59.518 40.000 0.00 0.00 0.00 3.53
1688 2891 5.728471 TGATCTCTCTAAGCTTCAGTTTGG 58.272 41.667 0.00 0.00 0.00 3.28
1689 2892 7.664082 TTTGATCTCTCTAAGCTTCAGTTTG 57.336 36.000 0.00 0.00 0.00 2.93
1690 2893 8.728833 CATTTTGATCTCTCTAAGCTTCAGTTT 58.271 33.333 0.00 0.00 0.00 2.66
1691 2894 7.882271 ACATTTTGATCTCTCTAAGCTTCAGTT 59.118 33.333 0.00 0.00 0.00 3.16
1692 2895 7.393216 ACATTTTGATCTCTCTAAGCTTCAGT 58.607 34.615 0.00 0.00 0.00 3.41
1693 2896 7.846644 ACATTTTGATCTCTCTAAGCTTCAG 57.153 36.000 0.00 0.00 0.00 3.02
1694 2897 9.155975 GTAACATTTTGATCTCTCTAAGCTTCA 57.844 33.333 0.00 0.00 0.00 3.02
1695 2898 9.155975 TGTAACATTTTGATCTCTCTAAGCTTC 57.844 33.333 0.00 0.00 0.00 3.86
1696 2899 9.678260 ATGTAACATTTTGATCTCTCTAAGCTT 57.322 29.630 3.48 3.48 0.00 3.74
1697 2900 9.107177 CATGTAACATTTTGATCTCTCTAAGCT 57.893 33.333 0.00 0.00 0.00 3.74
1698 2901 7.854916 GCATGTAACATTTTGATCTCTCTAAGC 59.145 37.037 0.00 0.00 0.00 3.09
1699 2902 9.107177 AGCATGTAACATTTTGATCTCTCTAAG 57.893 33.333 0.00 0.00 0.00 2.18
1700 2903 8.886719 CAGCATGTAACATTTTGATCTCTCTAA 58.113 33.333 0.00 0.00 0.00 2.10
1701 2904 8.260114 TCAGCATGTAACATTTTGATCTCTCTA 58.740 33.333 0.00 0.00 37.40 2.43
1702 2905 7.108194 TCAGCATGTAACATTTTGATCTCTCT 58.892 34.615 0.00 0.00 37.40 3.10
1703 2906 7.312657 TCAGCATGTAACATTTTGATCTCTC 57.687 36.000 0.00 0.00 37.40 3.20
1704 2907 7.533426 GTTCAGCATGTAACATTTTGATCTCT 58.467 34.615 0.00 0.00 37.40 3.10
1705 2908 6.467047 CGTTCAGCATGTAACATTTTGATCTC 59.533 38.462 0.00 0.00 37.40 2.75
1706 2909 6.317088 CGTTCAGCATGTAACATTTTGATCT 58.683 36.000 0.00 0.00 37.40 2.75
1707 2910 5.512788 CCGTTCAGCATGTAACATTTTGATC 59.487 40.000 0.00 0.00 37.40 2.92
1708 2911 5.401550 CCGTTCAGCATGTAACATTTTGAT 58.598 37.500 0.00 0.00 37.40 2.57
1709 2912 4.793071 CCGTTCAGCATGTAACATTTTGA 58.207 39.130 0.00 0.00 37.40 2.69
1710 2913 3.364621 GCCGTTCAGCATGTAACATTTTG 59.635 43.478 0.00 0.00 37.40 2.44
1711 2914 3.574614 GCCGTTCAGCATGTAACATTTT 58.425 40.909 0.00 0.00 37.40 1.82
1712 2915 2.094752 GGCCGTTCAGCATGTAACATTT 60.095 45.455 0.00 0.00 37.40 2.32
1713 2916 1.472480 GGCCGTTCAGCATGTAACATT 59.528 47.619 0.00 0.00 37.40 2.71
1714 2917 1.094785 GGCCGTTCAGCATGTAACAT 58.905 50.000 0.00 0.00 37.40 2.71
1715 2918 0.250510 TGGCCGTTCAGCATGTAACA 60.251 50.000 0.00 0.00 37.40 2.41
1716 2919 0.447801 CTGGCCGTTCAGCATGTAAC 59.552 55.000 0.00 0.00 37.40 2.50
1717 2920 0.676466 CCTGGCCGTTCAGCATGTAA 60.676 55.000 0.00 0.00 37.40 2.41
1718 2921 1.078497 CCTGGCCGTTCAGCATGTA 60.078 57.895 0.00 0.00 37.40 2.29
1719 2922 2.360350 CCTGGCCGTTCAGCATGT 60.360 61.111 0.00 0.00 37.40 3.21
1720 2923 2.046023 TCCTGGCCGTTCAGCATG 60.046 61.111 0.00 0.00 33.64 4.06
1721 2924 2.270205 CTCCTGGCCGTTCAGCAT 59.730 61.111 0.00 0.00 33.64 3.79
1722 2925 3.241530 ACTCCTGGCCGTTCAGCA 61.242 61.111 0.00 0.00 33.64 4.41
1723 2926 2.731691 TTCACTCCTGGCCGTTCAGC 62.732 60.000 0.00 0.00 33.64 4.26
1724 2927 0.951040 GTTCACTCCTGGCCGTTCAG 60.951 60.000 0.00 0.00 34.70 3.02
1725 2928 1.070786 GTTCACTCCTGGCCGTTCA 59.929 57.895 0.00 0.00 0.00 3.18
1726 2929 0.606604 TAGTTCACTCCTGGCCGTTC 59.393 55.000 0.00 0.00 0.00 3.95
1727 2930 0.320697 GTAGTTCACTCCTGGCCGTT 59.679 55.000 0.00 0.00 0.00 4.44
1728 2931 0.542232 AGTAGTTCACTCCTGGCCGT 60.542 55.000 0.00 0.00 28.33 5.68
1729 2932 0.173708 GAGTAGTTCACTCCTGGCCG 59.826 60.000 0.00 0.00 46.94 6.13
1736 2939 7.798342 GTCGGACGACTTGAGTAGTTCACTC 62.798 52.000 16.81 0.00 45.67 3.51
1737 2940 2.225963 CGGACGACTTGAGTAGTTCACT 59.774 50.000 4.02 0.00 41.47 3.41
1738 2941 2.225019 TCGGACGACTTGAGTAGTTCAC 59.775 50.000 4.02 0.00 37.17 3.18
1739 2942 2.225019 GTCGGACGACTTGAGTAGTTCA 59.775 50.000 16.81 0.00 41.57 3.18
1740 2943 2.225019 TGTCGGACGACTTGAGTAGTTC 59.775 50.000 23.18 0.00 44.80 3.01
1741 2944 2.224606 TGTCGGACGACTTGAGTAGTT 58.775 47.619 23.18 0.00 44.80 2.24
1742 2945 1.805345 CTGTCGGACGACTTGAGTAGT 59.195 52.381 23.18 0.00 44.80 2.73
1743 2946 1.805345 ACTGTCGGACGACTTGAGTAG 59.195 52.381 23.18 14.26 44.80 2.57
1744 2947 1.534163 CACTGTCGGACGACTTGAGTA 59.466 52.381 23.18 3.63 44.80 2.59
1745 2948 0.311165 CACTGTCGGACGACTTGAGT 59.689 55.000 23.18 16.09 44.80 3.41
1746 2949 0.311165 ACACTGTCGGACGACTTGAG 59.689 55.000 23.18 15.52 44.80 3.02
1747 2950 0.309922 GACACTGTCGGACGACTTGA 59.690 55.000 23.18 4.99 44.80 3.02
1748 2951 0.663568 GGACACTGTCGGACGACTTG 60.664 60.000 23.18 20.69 44.80 3.16
1749 2952 1.658673 GGACACTGTCGGACGACTT 59.341 57.895 23.18 9.56 44.80 3.01
1750 2953 2.266627 GGGACACTGTCGGACGACT 61.267 63.158 23.18 5.31 44.80 4.18
1751 2954 2.257676 GGGACACTGTCGGACGAC 59.742 66.667 17.19 17.19 44.77 4.34
1752 2955 2.203379 TGGGACACTGTCGGACGA 60.203 61.111 3.34 0.00 32.65 4.20
1806 3009 1.555477 CCCAAGTAGTGCGGGGGTTA 61.555 60.000 3.55 0.00 36.90 2.85
1826 3029 4.162009 AATGGCATGGGGGAGGGC 62.162 66.667 0.00 0.00 0.00 5.19
1850 3053 1.141881 AATGGGCGTCGTAGCTGAG 59.858 57.895 0.00 0.00 37.29 3.35
1857 3060 2.746277 GAAGGCAATGGGCGTCGT 60.746 61.111 0.00 0.00 46.16 4.34
1863 3066 1.139654 TGATCTCGAGAAGGCAATGGG 59.860 52.381 20.91 0.00 0.00 4.00
1883 3086 2.831526 AGTTTTCTTGCAGGTGGTTGTT 59.168 40.909 0.00 0.00 0.00 2.83
1977 3189 8.296713 TGAAGACTTTCACATAAAATTAGTGCC 58.703 33.333 0.00 0.00 38.37 5.01
2074 3286 0.792640 CGTGCTGACAACCACATCTC 59.207 55.000 6.69 0.00 32.37 2.75
2075 3287 0.603707 CCGTGCTGACAACCACATCT 60.604 55.000 6.69 0.00 32.37 2.90
2076 3288 0.884704 ACCGTGCTGACAACCACATC 60.885 55.000 6.69 0.00 32.37 3.06
2120 3332 2.624364 TCTTGCACAACACATGCTCATT 59.376 40.909 0.00 0.00 43.77 2.57
2126 3338 2.497138 TCTCCTCTTGCACAACACATG 58.503 47.619 0.00 0.00 0.00 3.21
2133 3345 1.002430 GTGTGGATCTCCTCTTGCACA 59.998 52.381 0.00 0.00 36.82 4.57
2151 3363 0.321387 AGAGACACATGCTGGCAGTG 60.321 55.000 17.16 9.98 39.12 3.66
2152 3364 0.399454 AAGAGACACATGCTGGCAGT 59.601 50.000 17.16 0.00 0.00 4.40
2161 3373 5.745312 TCATACTGGTTGAAGAGACACAT 57.255 39.130 0.00 0.00 0.00 3.21
2221 3433 5.957842 TTTAAGAAGATGACAATTGCCGT 57.042 34.783 5.05 0.00 0.00 5.68
2297 3509 2.173569 ACCCAAGAAAGAAGCTGACAGT 59.826 45.455 3.99 0.00 0.00 3.55
2302 3514 5.964958 TTGATTACCCAAGAAAGAAGCTG 57.035 39.130 0.00 0.00 0.00 4.24
2326 3540 7.094463 ACGAGTTATACTATTATTCCACCGGAG 60.094 40.741 9.46 0.00 31.21 4.63
2329 3543 7.365741 ACACGAGTTATACTATTATTCCACCG 58.634 38.462 0.00 0.00 0.00 4.94
2348 3563 5.229260 GCAAGACCTAAAACAAAAACACGAG 59.771 40.000 0.00 0.00 0.00 4.18
2350 3565 4.028026 CGCAAGACCTAAAACAAAAACACG 60.028 41.667 0.00 0.00 43.02 4.49
2371 3588 2.267642 TGGGTACACCAGATGCGC 59.732 61.111 0.00 0.00 46.80 6.09
2432 3649 3.226777 GTTCATAGCCTCCTCAGCTAGA 58.773 50.000 0.00 0.00 45.52 2.43
2440 3657 5.441718 TTTCAGATTGTTCATAGCCTCCT 57.558 39.130 0.00 0.00 0.00 3.69
2494 3712 7.618019 AGGGAGAACATGTATAGCATTTCTA 57.382 36.000 0.00 0.00 36.27 2.10
2545 3764 4.836125 CAGTGGTGCAATTTAGTCAGTT 57.164 40.909 0.00 0.00 0.00 3.16
2559 3778 1.598962 CACAGGTCAGGCAGTGGTG 60.599 63.158 0.00 0.00 0.00 4.17
2561 3780 1.830587 TAGCACAGGTCAGGCAGTGG 61.831 60.000 0.00 0.00 32.80 4.00
2581 3800 9.958180 TCTCAAGTAAATCCTCAAATTCATACA 57.042 29.630 0.00 0.00 0.00 2.29
2629 3848 1.376609 GCGCGGATTTGACAGGGAAT 61.377 55.000 8.83 0.00 0.00 3.01
2674 3894 2.236893 TGATCCTAGCTTGCACATCACA 59.763 45.455 0.00 0.00 0.00 3.58


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.