Multiple sequence alignment - TraesCS2A01G196400

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS2A01G196400 chr2A 100.000 4007 0 0 1 4007 166253570 166257576 0.000000e+00 7400.0
1 TraesCS2A01G196400 chr2A 92.854 2029 138 1 952 2980 197566213 197564192 0.000000e+00 2937.0
2 TraesCS2A01G196400 chr2A 92.675 2034 142 2 947 2980 166628055 166630081 0.000000e+00 2924.0
3 TraesCS2A01G196400 chr2A 86.257 1026 99 24 728 1720 197344832 197343816 0.000000e+00 1075.0
4 TraesCS2A01G196400 chr2A 86.849 365 41 5 1007 1371 624359602 624359959 6.240000e-108 401.0
5 TraesCS2A01G196400 chr2A 85.946 370 45 2 1007 1376 624458319 624458681 4.860000e-104 388.0
6 TraesCS2A01G196400 chr2A 89.139 267 24 4 640 903 166627709 166627973 1.070000e-85 327.0
7 TraesCS2A01G196400 chr2A 84.588 279 30 10 632 905 197566577 197566307 8.540000e-67 265.0
8 TraesCS2A01G196400 chr2A 82.511 223 32 5 1 217 670311391 670311612 5.290000e-44 189.0
9 TraesCS2A01G196400 chr2A 95.745 47 2 0 2980 3026 197564078 197564032 4.290000e-10 76.8
10 TraesCS2A01G196400 chr2A 95.652 46 2 0 3084 3129 166630329 166630374 1.540000e-09 75.0
11 TraesCS2A01G196400 chr2B 92.532 2370 128 23 650 2979 214280766 214283126 0.000000e+00 3350.0
12 TraesCS2A01G196400 chr2B 90.887 2436 166 26 585 2980 214312503 214314922 0.000000e+00 3217.0
13 TraesCS2A01G196400 chr2B 87.795 254 11 8 2980 3230 214283241 214283477 3.050000e-71 279.0
14 TraesCS2A01G196400 chr2B 88.341 223 18 6 3324 3544 214284465 214284681 1.100000e-65 261.0
15 TraesCS2A01G196400 chr2B 85.446 213 31 0 12 224 254015421 254015209 5.210000e-54 222.0
16 TraesCS2A01G196400 chr2B 90.244 82 1 3 3236 3310 214283525 214283606 2.550000e-17 100.0
17 TraesCS2A01G196400 chr1B 91.405 2420 180 14 578 2980 148416708 148414300 0.000000e+00 3291.0
18 TraesCS2A01G196400 chr1B 87.833 263 26 4 2980 3238 148414186 148413926 1.810000e-78 303.0
19 TraesCS2A01G196400 chr1D 90.606 2427 183 21 578 2971 93105604 93103190 0.000000e+00 3177.0
20 TraesCS2A01G196400 chr1D 86.188 362 43 2 1015 1376 19020776 19020422 6.280000e-103 385.0
21 TraesCS2A01G196400 chr1D 87.452 263 27 5 2980 3238 93103067 93102807 8.420000e-77 298.0
22 TraesCS2A01G196400 chr1D 81.461 178 26 6 284 454 287607346 287607523 5.400000e-29 139.0
23 TraesCS2A01G196400 chr1A 90.628 2358 184 20 632 2980 90163845 90161516 0.000000e+00 3096.0
24 TraesCS2A01G196400 chr1A 87.023 262 28 4 2980 3237 90161402 90161143 1.410000e-74 291.0
25 TraesCS2A01G196400 chr2D 94.655 1983 99 1 997 2979 156592466 156594441 0.000000e+00 3068.0
26 TraesCS2A01G196400 chr2D 90.055 2383 186 25 627 2979 182576294 182573933 0.000000e+00 3040.0
27 TraesCS2A01G196400 chr2D 93.464 2035 125 2 946 2980 156707427 156709453 0.000000e+00 3014.0
28 TraesCS2A01G196400 chr2D 90.607 1054 57 20 2980 4007 156594556 156595593 0.000000e+00 1360.0
29 TraesCS2A01G196400 chr2D 94.407 447 17 5 489 932 156591642 156592083 0.000000e+00 680.0
30 TraesCS2A01G196400 chr2D 86.685 368 42 2 1009 1376 481988434 481988794 6.240000e-108 401.0
31 TraesCS2A01G196400 chr2D 86.217 341 29 9 571 905 156707021 156707349 1.770000e-93 353.0
32 TraesCS2A01G196400 chr2D 77.778 180 10 14 2980 3129 156709567 156709746 2.570000e-12 84.2
33 TraesCS2A01G196400 chr2D 95.745 47 2 0 2980 3026 182573818 182573772 4.290000e-10 76.8
34 TraesCS2A01G196400 chr3B 81.283 374 50 10 130 487 474677565 474677934 6.550000e-73 285.0
35 TraesCS2A01G196400 chr3B 85.507 138 20 0 20 157 561106281 561106144 1.160000e-30 145.0
36 TraesCS2A01G196400 chr6D 87.783 221 24 1 7 224 303985370 303985150 5.140000e-64 255.0
37 TraesCS2A01G196400 chr6D 86.256 211 28 1 12 222 380690644 380690435 1.120000e-55 228.0
38 TraesCS2A01G196400 chr6D 85.294 170 24 1 323 491 25501149 25501318 1.480000e-39 174.0
39 TraesCS2A01G196400 chr3D 89.055 201 20 2 2 202 65425226 65425028 8.600000e-62 248.0
40 TraesCS2A01G196400 chr4A 76.680 506 65 21 1 490 689851601 689851133 8.660000e-57 231.0
41 TraesCS2A01G196400 chr7B 87.755 196 20 4 6 199 39913160 39913353 4.030000e-55 226.0
42 TraesCS2A01G196400 chr7A 82.022 267 31 10 205 455 41921957 41922222 1.130000e-50 211.0
43 TraesCS2A01G196400 chr4B 81.057 227 37 3 1 221 443000896 443001122 4.120000e-40 176.0
44 TraesCS2A01G196400 chr5D 82.278 158 26 2 334 490 418480002 418480158 6.990000e-28 135.0
45 TraesCS2A01G196400 chr5B 80.519 154 27 3 336 487 707172555 707172707 9.100000e-22 115.0
46 TraesCS2A01G196400 chr5B 75.107 233 41 11 276 492 546392605 546392836 4.260000e-15 93.5
47 TraesCS2A01G196400 chr6B 84.348 115 17 1 348 461 153636899 153636785 1.180000e-20 111.0
48 TraesCS2A01G196400 chr5A 97.143 35 1 0 277 311 32189150 32189184 4.320000e-05 60.2


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS2A01G196400 chr2A 166253570 166257576 4006 False 7400.000000 7400 100.000000 1 4007 1 chr2A.!!$F1 4006
1 TraesCS2A01G196400 chr2A 166627709 166630374 2665 False 1108.666667 2924 92.488667 640 3129 3 chr2A.!!$F5 2489
2 TraesCS2A01G196400 chr2A 197564032 197566577 2545 True 1092.933333 2937 91.062333 632 3026 3 chr2A.!!$R2 2394
3 TraesCS2A01G196400 chr2A 197343816 197344832 1016 True 1075.000000 1075 86.257000 728 1720 1 chr2A.!!$R1 992
4 TraesCS2A01G196400 chr2B 214312503 214314922 2419 False 3217.000000 3217 90.887000 585 2980 1 chr2B.!!$F1 2395
5 TraesCS2A01G196400 chr2B 214280766 214284681 3915 False 997.500000 3350 89.728000 650 3544 4 chr2B.!!$F2 2894
6 TraesCS2A01G196400 chr1B 148413926 148416708 2782 True 1797.000000 3291 89.619000 578 3238 2 chr1B.!!$R1 2660
7 TraesCS2A01G196400 chr1D 93102807 93105604 2797 True 1737.500000 3177 89.029000 578 3238 2 chr1D.!!$R2 2660
8 TraesCS2A01G196400 chr1A 90161143 90163845 2702 True 1693.500000 3096 88.825500 632 3237 2 chr1A.!!$R1 2605
9 TraesCS2A01G196400 chr2D 156591642 156595593 3951 False 1702.666667 3068 93.223000 489 4007 3 chr2D.!!$F2 3518
10 TraesCS2A01G196400 chr2D 182573772 182576294 2522 True 1558.400000 3040 92.900000 627 3026 2 chr2D.!!$R1 2399
11 TraesCS2A01G196400 chr2D 156707021 156709746 2725 False 1150.400000 3014 85.819667 571 3129 3 chr2D.!!$F3 2558

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
477 478 0.101399 GACAGGATGAGATCGCGTGT 59.899 55.0 5.77 0.0 39.69 4.49 F
480 481 0.179100 AGGATGAGATCGCGTGTTGG 60.179 55.0 5.77 0.0 0.00 3.77 F
481 482 0.179111 GGATGAGATCGCGTGTTGGA 60.179 55.0 5.77 0.0 0.00 3.53 F
946 1050 0.190069 ACACCACCAGTCCCTACTCA 59.810 55.0 0.00 0.0 31.97 3.41 F
1857 2261 0.317160 TCTGCGAAGTGATGAACGGT 59.683 50.0 0.00 0.0 0.00 4.83 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1923 2327 0.178998 GGATGTGCTCCATGATGGCT 60.179 55.000 6.59 0.00 44.26 4.75 R
2308 2712 1.429930 TAGTCCAGACTTGGGTTGCA 58.570 50.000 5.49 0.00 45.10 4.08 R
2349 2753 1.524621 GCAGTACGATGCCATGGCT 60.525 57.895 35.53 21.86 40.43 4.75 R
2616 3020 1.357420 AGGCCACCCATGTCATTTGTA 59.643 47.619 5.01 0.00 0.00 2.41 R
3584 5033 0.172803 CACTACGACAGCACCTACCC 59.827 60.000 0.00 0.00 0.00 3.69 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
17 18 2.668212 TTTTCCACAGCTCGCCGG 60.668 61.111 0.00 0.00 0.00 6.13
18 19 3.469863 TTTTCCACAGCTCGCCGGT 62.470 57.895 1.90 0.00 0.00 5.28
19 20 3.876589 TTTCCACAGCTCGCCGGTC 62.877 63.158 1.90 0.00 0.00 4.79
27 28 4.824515 CTCGCCGGTCCCTCCTCT 62.825 72.222 1.90 0.00 0.00 3.69
28 29 4.377760 TCGCCGGTCCCTCCTCTT 62.378 66.667 1.90 0.00 0.00 2.85
29 30 4.148825 CGCCGGTCCCTCCTCTTG 62.149 72.222 1.90 0.00 0.00 3.02
30 31 3.787001 GCCGGTCCCTCCTCTTGG 61.787 72.222 1.90 0.00 0.00 3.61
31 32 3.787001 CCGGTCCCTCCTCTTGGC 61.787 72.222 0.00 0.00 0.00 4.52
32 33 3.787001 CGGTCCCTCCTCTTGGCC 61.787 72.222 0.00 0.00 0.00 5.36
33 34 3.787001 GGTCCCTCCTCTTGGCCG 61.787 72.222 0.00 0.00 0.00 6.13
34 35 2.683933 GTCCCTCCTCTTGGCCGA 60.684 66.667 0.00 0.00 0.00 5.54
35 36 2.066999 GTCCCTCCTCTTGGCCGAT 61.067 63.158 0.00 0.00 0.00 4.18
36 37 1.306997 TCCCTCCTCTTGGCCGATT 60.307 57.895 0.00 0.00 0.00 3.34
37 38 1.147153 CCCTCCTCTTGGCCGATTC 59.853 63.158 0.00 0.00 0.00 2.52
38 39 1.147153 CCTCCTCTTGGCCGATTCC 59.853 63.158 0.00 0.00 0.00 3.01
39 40 1.147153 CTCCTCTTGGCCGATTCCC 59.853 63.158 0.00 0.00 0.00 3.97
40 41 1.306997 TCCTCTTGGCCGATTCCCT 60.307 57.895 0.00 0.00 0.00 4.20
41 42 1.153086 CCTCTTGGCCGATTCCCTG 60.153 63.158 0.00 0.00 0.00 4.45
42 43 1.604378 CTCTTGGCCGATTCCCTGT 59.396 57.895 0.00 0.00 0.00 4.00
43 44 0.462759 CTCTTGGCCGATTCCCTGTC 60.463 60.000 0.00 0.00 0.00 3.51
44 45 1.815421 CTTGGCCGATTCCCTGTCG 60.815 63.158 0.00 0.00 38.75 4.35
45 46 2.238847 CTTGGCCGATTCCCTGTCGA 62.239 60.000 0.00 0.00 41.40 4.20
46 47 2.107141 GGCCGATTCCCTGTCGAG 59.893 66.667 0.00 0.00 41.40 4.04
47 48 2.586357 GCCGATTCCCTGTCGAGC 60.586 66.667 0.00 0.00 41.40 5.03
48 49 3.082579 GCCGATTCCCTGTCGAGCT 62.083 63.158 0.00 0.00 41.40 4.09
49 50 1.517832 CCGATTCCCTGTCGAGCTT 59.482 57.895 0.00 0.00 41.40 3.74
50 51 0.807667 CCGATTCCCTGTCGAGCTTG 60.808 60.000 0.00 0.00 41.40 4.01
51 52 0.807667 CGATTCCCTGTCGAGCTTGG 60.808 60.000 0.00 0.00 41.40 3.61
52 53 1.078143 ATTCCCTGTCGAGCTTGGC 60.078 57.895 0.00 0.00 0.00 4.52
53 54 2.859273 ATTCCCTGTCGAGCTTGGCG 62.859 60.000 0.05 0.00 0.00 5.69
82 83 4.180946 CGTGAGCTCCGACCGAGG 62.181 72.222 12.15 0.00 39.22 4.63
83 84 4.500116 GTGAGCTCCGACCGAGGC 62.500 72.222 12.15 0.00 39.22 4.70
84 85 4.742649 TGAGCTCCGACCGAGGCT 62.743 66.667 12.15 8.27 39.22 4.58
85 86 3.453679 GAGCTCCGACCGAGGCTT 61.454 66.667 0.87 0.00 39.22 4.35
86 87 3.418744 GAGCTCCGACCGAGGCTTC 62.419 68.421 0.87 0.00 39.22 3.86
87 88 3.453679 GCTCCGACCGAGGCTTCT 61.454 66.667 0.00 0.00 39.22 2.85
88 89 3.007973 GCTCCGACCGAGGCTTCTT 62.008 63.158 0.00 0.00 39.22 2.52
89 90 1.139947 CTCCGACCGAGGCTTCTTC 59.860 63.158 0.00 0.00 34.67 2.87
90 91 1.595993 CTCCGACCGAGGCTTCTTCA 61.596 60.000 0.00 0.00 34.67 3.02
91 92 1.446272 CCGACCGAGGCTTCTTCAC 60.446 63.158 0.00 0.00 0.00 3.18
92 93 1.289066 CGACCGAGGCTTCTTCACA 59.711 57.895 0.00 0.00 0.00 3.58
93 94 0.108615 CGACCGAGGCTTCTTCACAT 60.109 55.000 0.00 0.00 0.00 3.21
94 95 1.363744 GACCGAGGCTTCTTCACATG 58.636 55.000 0.00 0.00 0.00 3.21
95 96 0.674895 ACCGAGGCTTCTTCACATGC 60.675 55.000 0.00 0.00 0.00 4.06
96 97 0.392193 CCGAGGCTTCTTCACATGCT 60.392 55.000 0.00 0.00 0.00 3.79
97 98 1.446907 CGAGGCTTCTTCACATGCTT 58.553 50.000 0.00 0.00 0.00 3.91
98 99 1.396301 CGAGGCTTCTTCACATGCTTC 59.604 52.381 0.00 0.00 0.00 3.86
99 100 2.709213 GAGGCTTCTTCACATGCTTCT 58.291 47.619 0.00 0.00 0.00 2.85
100 101 3.080319 GAGGCTTCTTCACATGCTTCTT 58.920 45.455 0.00 0.00 0.00 2.52
101 102 3.494332 AGGCTTCTTCACATGCTTCTTT 58.506 40.909 0.00 0.00 0.00 2.52
102 103 3.893813 AGGCTTCTTCACATGCTTCTTTT 59.106 39.130 0.00 0.00 0.00 2.27
103 104 4.343239 AGGCTTCTTCACATGCTTCTTTTT 59.657 37.500 0.00 0.00 0.00 1.94
104 105 5.536161 AGGCTTCTTCACATGCTTCTTTTTA 59.464 36.000 0.00 0.00 0.00 1.52
105 106 6.210185 AGGCTTCTTCACATGCTTCTTTTTAT 59.790 34.615 0.00 0.00 0.00 1.40
106 107 6.870439 GGCTTCTTCACATGCTTCTTTTTATT 59.130 34.615 0.00 0.00 0.00 1.40
107 108 7.062722 GGCTTCTTCACATGCTTCTTTTTATTC 59.937 37.037 0.00 0.00 0.00 1.75
108 109 7.201299 GCTTCTTCACATGCTTCTTTTTATTCG 60.201 37.037 0.00 0.00 0.00 3.34
109 110 6.086222 TCTTCACATGCTTCTTTTTATTCGC 58.914 36.000 0.00 0.00 0.00 4.70
110 111 4.732784 TCACATGCTTCTTTTTATTCGCC 58.267 39.130 0.00 0.00 0.00 5.54
111 112 4.217334 TCACATGCTTCTTTTTATTCGCCA 59.783 37.500 0.00 0.00 0.00 5.69
112 113 4.324402 CACATGCTTCTTTTTATTCGCCAC 59.676 41.667 0.00 0.00 0.00 5.01
113 114 3.196007 TGCTTCTTTTTATTCGCCACG 57.804 42.857 0.00 0.00 0.00 4.94
114 115 2.095466 TGCTTCTTTTTATTCGCCACGG 60.095 45.455 0.00 0.00 0.00 4.94
115 116 2.731027 GCTTCTTTTTATTCGCCACGGG 60.731 50.000 0.00 0.00 0.00 5.28
116 117 0.806241 TCTTTTTATTCGCCACGGGC 59.194 50.000 4.96 4.96 46.75 6.13
138 139 4.619227 CGGCAAGTGGTGGGTCGT 62.619 66.667 0.00 0.00 0.00 4.34
139 140 2.668550 GGCAAGTGGTGGGTCGTC 60.669 66.667 0.00 0.00 0.00 4.20
140 141 3.041940 GCAAGTGGTGGGTCGTCG 61.042 66.667 0.00 0.00 0.00 5.12
141 142 2.357034 CAAGTGGTGGGTCGTCGG 60.357 66.667 0.00 0.00 0.00 4.79
142 143 3.622826 AAGTGGTGGGTCGTCGGG 61.623 66.667 0.00 0.00 0.00 5.14
143 144 4.608774 AGTGGTGGGTCGTCGGGA 62.609 66.667 0.00 0.00 0.00 5.14
144 145 3.387947 GTGGTGGGTCGTCGGGAT 61.388 66.667 0.00 0.00 0.00 3.85
145 146 2.605295 TGGTGGGTCGTCGGGATT 60.605 61.111 0.00 0.00 0.00 3.01
146 147 2.186125 GGTGGGTCGTCGGGATTC 59.814 66.667 0.00 0.00 0.00 2.52
147 148 2.202703 GTGGGTCGTCGGGATTCG 60.203 66.667 0.00 0.00 40.90 3.34
148 149 4.137872 TGGGTCGTCGGGATTCGC 62.138 66.667 0.00 0.00 39.05 4.70
149 150 4.137872 GGGTCGTCGGGATTCGCA 62.138 66.667 1.41 0.00 39.05 5.10
150 151 2.106332 GGTCGTCGGGATTCGCAT 59.894 61.111 1.41 0.00 39.05 4.73
151 152 1.949631 GGTCGTCGGGATTCGCATC 60.950 63.158 1.41 0.00 39.05 3.91
152 153 2.025584 TCGTCGGGATTCGCATCG 59.974 61.111 1.41 5.14 39.05 3.84
153 154 2.278596 CGTCGGGATTCGCATCGT 60.279 61.111 1.41 0.00 39.05 3.73
154 155 2.293627 CGTCGGGATTCGCATCGTC 61.294 63.158 1.41 0.00 39.05 4.20
155 156 2.025584 TCGGGATTCGCATCGTCG 59.974 61.111 1.41 3.83 39.05 5.12
156 157 3.030308 CGGGATTCGCATCGTCGG 61.030 66.667 1.41 0.00 0.00 4.79
157 158 3.338676 GGGATTCGCATCGTCGGC 61.339 66.667 0.00 0.00 0.00 5.54
158 159 3.338676 GGATTCGCATCGTCGGCC 61.339 66.667 0.00 0.00 0.00 6.13
159 160 2.584970 GATTCGCATCGTCGGCCA 60.585 61.111 2.24 0.00 0.00 5.36
160 161 1.956170 GATTCGCATCGTCGGCCAT 60.956 57.895 2.24 0.00 0.00 4.40
161 162 2.162921 GATTCGCATCGTCGGCCATG 62.163 60.000 2.24 0.00 0.00 3.66
162 163 2.642996 ATTCGCATCGTCGGCCATGA 62.643 55.000 2.24 1.11 0.00 3.07
163 164 2.642996 TTCGCATCGTCGGCCATGAT 62.643 55.000 2.24 3.75 0.00 2.45
165 166 2.610694 GCATCGTCGGCCATGATGG 61.611 63.158 25.70 7.21 45.54 3.51
166 167 1.069596 CATCGTCGGCCATGATGGA 59.930 57.895 17.22 7.71 42.77 3.41
167 168 0.321034 CATCGTCGGCCATGATGGAT 60.321 55.000 17.22 9.22 42.77 3.41
168 169 0.321034 ATCGTCGGCCATGATGGATG 60.321 55.000 17.22 6.34 40.96 3.51
177 178 0.697079 CATGATGGATGGAGGGAGGG 59.303 60.000 0.00 0.00 0.00 4.30
178 179 0.477202 ATGATGGATGGAGGGAGGGG 60.477 60.000 0.00 0.00 0.00 4.79
179 180 2.451294 ATGGATGGAGGGAGGGGC 60.451 66.667 0.00 0.00 0.00 5.80
180 181 3.367604 ATGGATGGAGGGAGGGGCA 62.368 63.158 0.00 0.00 0.00 5.36
181 182 2.696125 GGATGGAGGGAGGGGCAA 60.696 66.667 0.00 0.00 0.00 4.52
182 183 2.761465 GGATGGAGGGAGGGGCAAG 61.761 68.421 0.00 0.00 0.00 4.01
183 184 2.697644 ATGGAGGGAGGGGCAAGG 60.698 66.667 0.00 0.00 0.00 3.61
211 212 3.775654 GGGAGAGTGGAGGGCGTG 61.776 72.222 0.00 0.00 0.00 5.34
212 213 3.775654 GGAGAGTGGAGGGCGTGG 61.776 72.222 0.00 0.00 0.00 4.94
213 214 4.459089 GAGAGTGGAGGGCGTGGC 62.459 72.222 0.00 0.00 0.00 5.01
252 253 3.361977 CGCGGGAGGGTTTTGGTG 61.362 66.667 0.00 0.00 38.10 4.17
253 254 2.989253 GCGGGAGGGTTTTGGTGG 60.989 66.667 0.00 0.00 0.00 4.61
254 255 2.840576 CGGGAGGGTTTTGGTGGA 59.159 61.111 0.00 0.00 0.00 4.02
255 256 1.151908 CGGGAGGGTTTTGGTGGAA 59.848 57.895 0.00 0.00 0.00 3.53
256 257 0.468400 CGGGAGGGTTTTGGTGGAAA 60.468 55.000 0.00 0.00 0.00 3.13
257 258 1.338107 GGGAGGGTTTTGGTGGAAAG 58.662 55.000 0.00 0.00 0.00 2.62
258 259 1.133294 GGGAGGGTTTTGGTGGAAAGA 60.133 52.381 0.00 0.00 0.00 2.52
259 260 2.239400 GGAGGGTTTTGGTGGAAAGAG 58.761 52.381 0.00 0.00 0.00 2.85
260 261 2.158519 GGAGGGTTTTGGTGGAAAGAGA 60.159 50.000 0.00 0.00 0.00 3.10
261 262 3.149981 GAGGGTTTTGGTGGAAAGAGAG 58.850 50.000 0.00 0.00 0.00 3.20
262 263 2.158460 AGGGTTTTGGTGGAAAGAGAGG 60.158 50.000 0.00 0.00 0.00 3.69
263 264 2.239400 GGTTTTGGTGGAAAGAGAGGG 58.761 52.381 0.00 0.00 0.00 4.30
264 265 2.158519 GGTTTTGGTGGAAAGAGAGGGA 60.159 50.000 0.00 0.00 0.00 4.20
265 266 3.562182 GTTTTGGTGGAAAGAGAGGGAA 58.438 45.455 0.00 0.00 0.00 3.97
266 267 3.958147 GTTTTGGTGGAAAGAGAGGGAAA 59.042 43.478 0.00 0.00 0.00 3.13
267 268 3.508845 TTGGTGGAAAGAGAGGGAAAG 57.491 47.619 0.00 0.00 0.00 2.62
268 269 2.418669 TGGTGGAAAGAGAGGGAAAGT 58.581 47.619 0.00 0.00 0.00 2.66
269 270 2.106511 TGGTGGAAAGAGAGGGAAAGTG 59.893 50.000 0.00 0.00 0.00 3.16
270 271 2.372172 GGTGGAAAGAGAGGGAAAGTGA 59.628 50.000 0.00 0.00 0.00 3.41
271 272 3.403968 GTGGAAAGAGAGGGAAAGTGAC 58.596 50.000 0.00 0.00 0.00 3.67
272 273 2.372172 TGGAAAGAGAGGGAAAGTGACC 59.628 50.000 0.00 0.00 0.00 4.02
273 274 2.613223 GGAAAGAGAGGGAAAGTGACCG 60.613 54.545 0.00 0.00 0.00 4.79
274 275 0.977395 AAGAGAGGGAAAGTGACCGG 59.023 55.000 0.00 0.00 0.00 5.28
275 276 1.079057 GAGAGGGAAAGTGACCGGC 60.079 63.158 0.00 0.00 0.00 6.13
276 277 1.536662 AGAGGGAAAGTGACCGGCT 60.537 57.895 0.00 0.00 0.00 5.52
277 278 1.376037 GAGGGAAAGTGACCGGCTG 60.376 63.158 0.00 0.00 0.00 4.85
278 279 2.113243 GAGGGAAAGTGACCGGCTGT 62.113 60.000 0.00 0.00 0.00 4.40
279 280 1.966451 GGGAAAGTGACCGGCTGTG 60.966 63.158 0.00 0.00 0.00 3.66
280 281 2.617274 GGAAAGTGACCGGCTGTGC 61.617 63.158 0.00 0.00 0.00 4.57
281 282 2.594592 AAAGTGACCGGCTGTGCC 60.595 61.111 0.00 0.00 46.75 5.01
306 307 4.097361 GACGGGCCAGGGAAGGAC 62.097 72.222 8.08 0.00 35.24 3.85
307 308 4.974438 ACGGGCCAGGGAAGGACA 62.974 66.667 8.08 0.00 38.98 4.02
308 309 3.646715 CGGGCCAGGGAAGGACAA 61.647 66.667 4.39 0.00 38.98 3.18
309 310 2.356667 GGGCCAGGGAAGGACAAG 59.643 66.667 4.39 0.00 38.98 3.16
310 311 2.356667 GGCCAGGGAAGGACAAGG 59.643 66.667 0.00 0.00 36.38 3.61
311 312 2.356667 GCCAGGGAAGGACAAGGG 59.643 66.667 0.00 0.00 0.00 3.95
312 313 2.356667 CCAGGGAAGGACAAGGGC 59.643 66.667 0.00 0.00 0.00 5.19
313 314 2.045926 CAGGGAAGGACAAGGGCG 60.046 66.667 0.00 0.00 0.00 6.13
314 315 4.035102 AGGGAAGGACAAGGGCGC 62.035 66.667 0.00 0.00 0.00 6.53
315 316 4.035102 GGGAAGGACAAGGGCGCT 62.035 66.667 7.64 0.00 0.00 5.92
316 317 2.666098 GGGAAGGACAAGGGCGCTA 61.666 63.158 7.64 0.00 0.00 4.26
317 318 1.449778 GGAAGGACAAGGGCGCTAC 60.450 63.158 7.64 0.00 0.00 3.58
318 319 1.295423 GAAGGACAAGGGCGCTACA 59.705 57.895 7.64 0.00 0.00 2.74
319 320 1.003718 AAGGACAAGGGCGCTACAC 60.004 57.895 7.64 0.00 0.00 2.90
329 330 4.185413 CGCTACACGCTGTCCATT 57.815 55.556 0.00 0.00 36.13 3.16
330 331 1.999051 CGCTACACGCTGTCCATTC 59.001 57.895 0.00 0.00 36.13 2.67
331 332 0.735978 CGCTACACGCTGTCCATTCA 60.736 55.000 0.00 0.00 36.13 2.57
332 333 1.438651 GCTACACGCTGTCCATTCAA 58.561 50.000 0.00 0.00 35.14 2.69
333 334 1.128692 GCTACACGCTGTCCATTCAAC 59.871 52.381 0.00 0.00 35.14 3.18
334 335 1.732259 CTACACGCTGTCCATTCAACC 59.268 52.381 0.00 0.00 0.00 3.77
335 336 1.227999 ACACGCTGTCCATTCAACCG 61.228 55.000 0.00 0.00 0.00 4.44
336 337 2.325082 ACGCTGTCCATTCAACCGC 61.325 57.895 0.00 0.00 0.00 5.68
337 338 2.324330 CGCTGTCCATTCAACCGCA 61.324 57.895 0.00 0.00 0.00 5.69
338 339 1.851021 CGCTGTCCATTCAACCGCAA 61.851 55.000 0.00 0.00 0.00 4.85
339 340 0.313672 GCTGTCCATTCAACCGCAAA 59.686 50.000 0.00 0.00 0.00 3.68
340 341 1.930371 GCTGTCCATTCAACCGCAAAC 60.930 52.381 0.00 0.00 0.00 2.93
341 342 1.608590 CTGTCCATTCAACCGCAAACT 59.391 47.619 0.00 0.00 0.00 2.66
342 343 1.606668 TGTCCATTCAACCGCAAACTC 59.393 47.619 0.00 0.00 0.00 3.01
343 344 0.871722 TCCATTCAACCGCAAACTCG 59.128 50.000 0.00 0.00 0.00 4.18
344 345 0.591170 CCATTCAACCGCAAACTCGT 59.409 50.000 0.00 0.00 0.00 4.18
345 346 1.399727 CCATTCAACCGCAAACTCGTC 60.400 52.381 0.00 0.00 0.00 4.20
346 347 1.531149 CATTCAACCGCAAACTCGTCT 59.469 47.619 0.00 0.00 0.00 4.18
347 348 1.214367 TTCAACCGCAAACTCGTCTC 58.786 50.000 0.00 0.00 0.00 3.36
348 349 0.103390 TCAACCGCAAACTCGTCTCA 59.897 50.000 0.00 0.00 0.00 3.27
349 350 0.934496 CAACCGCAAACTCGTCTCAA 59.066 50.000 0.00 0.00 0.00 3.02
350 351 1.329292 CAACCGCAAACTCGTCTCAAA 59.671 47.619 0.00 0.00 0.00 2.69
351 352 0.935196 ACCGCAAACTCGTCTCAAAC 59.065 50.000 0.00 0.00 0.00 2.93
352 353 1.217882 CCGCAAACTCGTCTCAAACT 58.782 50.000 0.00 0.00 0.00 2.66
353 354 1.597663 CCGCAAACTCGTCTCAAACTT 59.402 47.619 0.00 0.00 0.00 2.66
354 355 2.599848 CCGCAAACTCGTCTCAAACTTG 60.600 50.000 0.00 0.00 0.00 3.16
355 356 2.599848 CGCAAACTCGTCTCAAACTTGG 60.600 50.000 0.00 0.00 0.00 3.61
356 357 2.287009 GCAAACTCGTCTCAAACTTGGG 60.287 50.000 0.00 0.00 0.00 4.12
357 358 2.943033 CAAACTCGTCTCAAACTTGGGT 59.057 45.455 0.00 0.00 0.00 4.51
358 359 2.528041 ACTCGTCTCAAACTTGGGTC 57.472 50.000 0.00 0.00 0.00 4.46
359 360 1.269621 ACTCGTCTCAAACTTGGGTCG 60.270 52.381 3.04 3.04 40.65 4.79
360 361 1.000607 CTCGTCTCAAACTTGGGTCGA 60.001 52.381 10.45 10.45 44.48 4.20
361 362 1.000607 TCGTCTCAAACTTGGGTCGAG 60.001 52.381 7.43 0.00 42.52 4.04
362 363 1.000607 CGTCTCAAACTTGGGTCGAGA 60.001 52.381 3.31 0.00 41.56 4.04
363 364 2.545113 CGTCTCAAACTTGGGTCGAGAA 60.545 50.000 3.31 0.00 41.56 2.87
364 365 3.665190 GTCTCAAACTTGGGTCGAGAAT 58.335 45.455 0.00 0.00 34.68 2.40
365 366 3.433615 GTCTCAAACTTGGGTCGAGAATG 59.566 47.826 0.00 0.00 34.68 2.67
366 367 2.744202 CTCAAACTTGGGTCGAGAATGG 59.256 50.000 0.00 0.00 0.00 3.16
367 368 2.370519 TCAAACTTGGGTCGAGAATGGA 59.629 45.455 0.00 0.00 0.00 3.41
368 369 3.009033 TCAAACTTGGGTCGAGAATGGAT 59.991 43.478 0.00 0.00 0.00 3.41
369 370 2.990066 ACTTGGGTCGAGAATGGATC 57.010 50.000 0.00 0.00 0.00 3.36
370 371 2.187958 ACTTGGGTCGAGAATGGATCA 58.812 47.619 0.00 0.00 0.00 2.92
371 372 2.571653 ACTTGGGTCGAGAATGGATCAA 59.428 45.455 0.00 0.00 0.00 2.57
372 373 3.009033 ACTTGGGTCGAGAATGGATCAAA 59.991 43.478 0.00 0.00 0.00 2.69
373 374 3.712016 TGGGTCGAGAATGGATCAAAA 57.288 42.857 0.00 0.00 0.00 2.44
374 375 4.027674 TGGGTCGAGAATGGATCAAAAA 57.972 40.909 0.00 0.00 0.00 1.94
375 376 3.756434 TGGGTCGAGAATGGATCAAAAAC 59.244 43.478 0.00 0.00 0.00 2.43
376 377 3.181510 GGGTCGAGAATGGATCAAAAACG 60.182 47.826 0.00 0.00 0.00 3.60
377 378 3.181510 GGTCGAGAATGGATCAAAAACGG 60.182 47.826 0.00 0.00 0.00 4.44
378 379 3.682858 GTCGAGAATGGATCAAAAACGGA 59.317 43.478 0.00 0.00 0.00 4.69
379 380 3.682858 TCGAGAATGGATCAAAAACGGAC 59.317 43.478 0.00 0.00 0.00 4.79
380 381 3.435327 CGAGAATGGATCAAAAACGGACA 59.565 43.478 0.00 0.00 0.00 4.02
381 382 4.436050 CGAGAATGGATCAAAAACGGACAG 60.436 45.833 0.00 0.00 0.00 3.51
382 383 4.651778 AGAATGGATCAAAAACGGACAGA 58.348 39.130 0.00 0.00 0.00 3.41
383 384 5.070001 AGAATGGATCAAAAACGGACAGAA 58.930 37.500 0.00 0.00 0.00 3.02
384 385 5.534654 AGAATGGATCAAAAACGGACAGAAA 59.465 36.000 0.00 0.00 0.00 2.52
385 386 5.782893 ATGGATCAAAAACGGACAGAAAA 57.217 34.783 0.00 0.00 0.00 2.29
386 387 4.927422 TGGATCAAAAACGGACAGAAAAC 58.073 39.130 0.00 0.00 0.00 2.43
387 388 3.972502 GGATCAAAAACGGACAGAAAACG 59.027 43.478 0.00 0.00 0.00 3.60
388 389 3.408288 TCAAAAACGGACAGAAAACGG 57.592 42.857 0.00 0.00 0.00 4.44
389 390 3.008330 TCAAAAACGGACAGAAAACGGA 58.992 40.909 0.00 0.00 0.00 4.69
390 391 3.103007 CAAAAACGGACAGAAAACGGAC 58.897 45.455 0.00 0.00 0.00 4.79
391 392 0.932399 AAACGGACAGAAAACGGACG 59.068 50.000 0.00 0.00 0.00 4.79
392 393 0.102844 AACGGACAGAAAACGGACGA 59.897 50.000 0.00 0.00 0.00 4.20
393 394 0.316204 ACGGACAGAAAACGGACGAT 59.684 50.000 0.00 0.00 0.00 3.73
394 395 0.713883 CGGACAGAAAACGGACGATG 59.286 55.000 0.00 0.00 0.00 3.84
395 396 1.076332 GGACAGAAAACGGACGATGG 58.924 55.000 0.00 0.00 0.00 3.51
396 397 1.607251 GGACAGAAAACGGACGATGGT 60.607 52.381 0.00 0.00 0.00 3.55
397 398 1.725164 GACAGAAAACGGACGATGGTC 59.275 52.381 0.00 0.00 42.66 4.02
398 399 1.343465 ACAGAAAACGGACGATGGTCT 59.657 47.619 7.84 0.00 42.97 3.85
405 406 1.922570 CGGACGATGGTCTGTTTAGG 58.077 55.000 8.45 0.00 43.29 2.69
406 407 1.653151 GGACGATGGTCTGTTTAGGC 58.347 55.000 7.84 0.00 42.97 3.93
412 413 3.165498 GTCTGTTTAGGCCACGCG 58.835 61.111 5.01 3.53 0.00 6.01
413 414 1.666872 GTCTGTTTAGGCCACGCGT 60.667 57.895 5.58 5.58 0.00 6.01
414 415 1.070105 TCTGTTTAGGCCACGCGTT 59.930 52.632 10.22 0.00 0.00 4.84
415 416 1.206578 CTGTTTAGGCCACGCGTTG 59.793 57.895 10.22 7.75 0.00 4.10
424 425 3.726517 CACGCGTTGGAAGGCCTG 61.727 66.667 10.22 0.00 36.51 4.85
427 428 2.985847 GCGTTGGAAGGCCTGCTT 60.986 61.111 11.64 0.00 33.94 3.91
428 429 2.564721 GCGTTGGAAGGCCTGCTTT 61.565 57.895 11.64 0.00 33.94 3.51
429 430 1.286880 CGTTGGAAGGCCTGCTTTG 59.713 57.895 11.64 0.00 34.31 2.77
430 431 1.455383 CGTTGGAAGGCCTGCTTTGT 61.455 55.000 11.64 0.00 34.31 2.83
431 432 0.315251 GTTGGAAGGCCTGCTTTGTC 59.685 55.000 11.64 0.11 34.31 3.18
432 433 0.827507 TTGGAAGGCCTGCTTTGTCC 60.828 55.000 11.64 11.52 34.31 4.02
433 434 2.335712 GGAAGGCCTGCTTTGTCCG 61.336 63.158 11.64 0.00 0.00 4.79
434 435 1.600916 GAAGGCCTGCTTTGTCCGT 60.601 57.895 5.69 0.00 0.00 4.69
435 436 1.152756 AAGGCCTGCTTTGTCCGTT 60.153 52.632 5.69 0.00 0.00 4.44
436 437 0.755327 AAGGCCTGCTTTGTCCGTTT 60.755 50.000 5.69 0.00 0.00 3.60
437 438 0.109723 AGGCCTGCTTTGTCCGTTTA 59.890 50.000 3.11 0.00 0.00 2.01
438 439 0.240145 GGCCTGCTTTGTCCGTTTAC 59.760 55.000 0.00 0.00 0.00 2.01
439 440 0.240145 GCCTGCTTTGTCCGTTTACC 59.760 55.000 0.00 0.00 0.00 2.85
440 441 1.892209 CCTGCTTTGTCCGTTTACCT 58.108 50.000 0.00 0.00 0.00 3.08
441 442 1.804748 CCTGCTTTGTCCGTTTACCTC 59.195 52.381 0.00 0.00 0.00 3.85
442 443 2.550208 CCTGCTTTGTCCGTTTACCTCT 60.550 50.000 0.00 0.00 0.00 3.69
443 444 3.306502 CCTGCTTTGTCCGTTTACCTCTA 60.307 47.826 0.00 0.00 0.00 2.43
444 445 4.312443 CTGCTTTGTCCGTTTACCTCTAA 58.688 43.478 0.00 0.00 0.00 2.10
445 446 4.706035 TGCTTTGTCCGTTTACCTCTAAA 58.294 39.130 0.00 0.00 0.00 1.85
446 447 4.512571 TGCTTTGTCCGTTTACCTCTAAAC 59.487 41.667 0.00 0.00 38.86 2.01
453 454 1.650645 GTTTACCTCTAAACGGACGCG 59.349 52.381 3.53 3.53 34.04 6.01
454 455 0.171007 TTACCTCTAAACGGACGCGG 59.829 55.000 12.47 0.00 0.00 6.46
455 456 0.676466 TACCTCTAAACGGACGCGGA 60.676 55.000 12.47 0.00 0.00 5.54
456 457 1.515736 CCTCTAAACGGACGCGGAC 60.516 63.158 12.47 3.69 0.00 4.79
458 459 2.877582 CTAAACGGACGCGGACGG 60.878 66.667 24.44 17.34 46.04 4.79
459 460 3.326889 CTAAACGGACGCGGACGGA 62.327 63.158 24.44 11.31 46.04 4.69
460 461 3.609214 TAAACGGACGCGGACGGAC 62.609 63.158 24.44 3.89 46.04 4.79
465 466 3.823330 GACGCGGACGGACAGGAT 61.823 66.667 12.47 0.00 46.04 3.24
466 467 4.129737 ACGCGGACGGACAGGATG 62.130 66.667 12.47 0.00 46.04 3.51
467 468 3.822192 CGCGGACGGACAGGATGA 61.822 66.667 0.00 0.00 35.72 2.92
468 469 2.105128 GCGGACGGACAGGATGAG 59.895 66.667 0.00 0.00 39.69 2.90
469 470 2.415608 GCGGACGGACAGGATGAGA 61.416 63.158 0.00 0.00 39.69 3.27
470 471 1.739338 GCGGACGGACAGGATGAGAT 61.739 60.000 0.00 0.00 39.69 2.75
471 472 0.312416 CGGACGGACAGGATGAGATC 59.688 60.000 0.00 0.00 39.69 2.75
472 473 0.312416 GGACGGACAGGATGAGATCG 59.688 60.000 0.00 0.00 39.69 3.69
473 474 0.318275 GACGGACAGGATGAGATCGC 60.318 60.000 0.00 0.00 39.69 4.58
474 475 1.371022 CGGACAGGATGAGATCGCG 60.371 63.158 0.00 0.00 39.69 5.87
475 476 1.736586 GGACAGGATGAGATCGCGT 59.263 57.895 5.77 0.00 39.69 6.01
476 477 0.596083 GGACAGGATGAGATCGCGTG 60.596 60.000 5.77 0.00 39.69 5.34
477 478 0.101399 GACAGGATGAGATCGCGTGT 59.899 55.000 5.77 0.00 39.69 4.49
478 479 0.532573 ACAGGATGAGATCGCGTGTT 59.467 50.000 5.77 0.00 39.69 3.32
479 480 0.926155 CAGGATGAGATCGCGTGTTG 59.074 55.000 5.77 0.00 39.69 3.33
480 481 0.179100 AGGATGAGATCGCGTGTTGG 60.179 55.000 5.77 0.00 0.00 3.77
481 482 0.179111 GGATGAGATCGCGTGTTGGA 60.179 55.000 5.77 0.00 0.00 3.53
482 483 1.203928 GATGAGATCGCGTGTTGGAG 58.796 55.000 5.77 0.00 0.00 3.86
483 484 0.532573 ATGAGATCGCGTGTTGGAGT 59.467 50.000 5.77 0.00 0.00 3.85
484 485 0.317160 TGAGATCGCGTGTTGGAGTT 59.683 50.000 5.77 0.00 0.00 3.01
485 486 0.716108 GAGATCGCGTGTTGGAGTTG 59.284 55.000 5.77 0.00 0.00 3.16
486 487 0.670546 AGATCGCGTGTTGGAGTTGG 60.671 55.000 5.77 0.00 0.00 3.77
487 488 2.240612 GATCGCGTGTTGGAGTTGGC 62.241 60.000 5.77 0.00 0.00 4.52
502 503 3.120108 AGTTGGCCTAATTAGCTGGGTA 58.880 45.455 3.32 0.00 0.00 3.69
503 504 3.722101 AGTTGGCCTAATTAGCTGGGTAT 59.278 43.478 3.32 0.00 0.00 2.73
504 505 4.911522 AGTTGGCCTAATTAGCTGGGTATA 59.088 41.667 3.32 0.00 0.00 1.47
506 507 5.499004 TGGCCTAATTAGCTGGGTATAAG 57.501 43.478 3.32 0.00 0.00 1.73
507 508 5.159637 TGGCCTAATTAGCTGGGTATAAGA 58.840 41.667 3.32 0.00 0.00 2.10
508 509 5.248477 TGGCCTAATTAGCTGGGTATAAGAG 59.752 44.000 3.32 0.00 0.00 2.85
541 542 1.429825 CTCGTCGCGAAGTCTCCAT 59.570 57.895 21.15 0.00 34.74 3.41
545 546 1.189403 GTCGCGAAGTCTCCATAACG 58.811 55.000 12.06 0.00 0.00 3.18
551 552 3.846360 CGAAGTCTCCATAACGGACTTT 58.154 45.455 8.61 0.00 46.21 2.66
575 576 1.620822 TCGCCATCAGCTAGCATCTA 58.379 50.000 18.83 0.00 40.39 1.98
576 577 1.543358 TCGCCATCAGCTAGCATCTAG 59.457 52.381 18.83 3.54 40.39 2.43
624 629 1.523938 GTTCCCCTCGCATAGCACC 60.524 63.158 0.00 0.00 0.00 5.01
836 883 1.153086 CCTTCCCTCGCCTCCATTG 60.153 63.158 0.00 0.00 0.00 2.82
939 1043 2.632987 ACAGTAAACACCACCAGTCC 57.367 50.000 0.00 0.00 0.00 3.85
944 1048 1.815757 AAACACCACCAGTCCCTACT 58.184 50.000 0.00 0.00 35.91 2.57
946 1050 0.190069 ACACCACCAGTCCCTACTCA 59.810 55.000 0.00 0.00 31.97 3.41
970 1085 1.205655 TGCTCCATCGAGACTTCAAGG 59.794 52.381 0.00 0.00 38.52 3.61
973 1088 1.623311 TCCATCGAGACTTCAAGGCAA 59.377 47.619 0.00 0.00 0.00 4.52
984 1099 3.120199 ACTTCAAGGCAAATTGTCGATCG 60.120 43.478 9.36 9.36 0.00 3.69
1099 1501 2.125512 GAGCCATCTTGACGCCGT 60.126 61.111 0.00 0.00 0.00 5.68
1100 1502 2.125512 AGCCATCTTGACGCCGTC 60.126 61.111 10.96 10.96 0.00 4.79
1101 1503 2.434185 GCCATCTTGACGCCGTCA 60.434 61.111 17.22 17.22 41.09 4.35
1305 1708 1.647629 CGATAGCTACGGCGTCACT 59.352 57.895 19.21 17.96 44.37 3.41
1380 1783 1.443828 GGAGCTCATCCGGTTCCTC 59.556 63.158 17.19 1.67 38.67 3.71
1479 1882 1.059584 TCAACACCCTGCTCCAAGGA 61.060 55.000 0.00 0.00 40.02 3.36
1790 2194 0.994995 CTCGCGTCCATTGTTCTCTG 59.005 55.000 5.77 0.00 0.00 3.35
1857 2261 0.317160 TCTGCGAAGTGATGAACGGT 59.683 50.000 0.00 0.00 0.00 4.83
1923 2327 2.895680 GGACAGATCGAGGCTGCA 59.104 61.111 15.63 0.00 36.86 4.41
2160 2564 1.818060 CGTGGAAAGGCAATTCATGGA 59.182 47.619 0.00 0.00 0.00 3.41
2181 2585 1.152777 CAACTTCCAGGGCACACCA 60.153 57.895 0.00 0.00 43.89 4.17
2331 2735 2.305927 CAACCCAAGTCTGGACTATGGT 59.694 50.000 19.88 17.44 46.92 3.55
2344 2748 1.427368 ACTATGGTTTCAAGGGTGCCA 59.573 47.619 0.00 0.00 0.00 4.92
2349 2753 2.109128 TGGTTTCAAGGGTGCCAAGATA 59.891 45.455 0.00 0.00 0.00 1.98
2361 2765 1.162698 CCAAGATAGCCATGGCATCG 58.837 55.000 37.18 22.10 44.88 3.84
2538 2942 2.025767 TTGCGTTGTGCCAAGCCATT 62.026 50.000 0.00 0.00 45.60 3.16
2794 3198 4.379243 CCAACGGCGAGGCTGAGT 62.379 66.667 16.62 0.00 38.46 3.41
2838 3242 2.092753 TGCCAAGGTTGCCAAATTTGAA 60.093 40.909 19.86 3.99 0.00 2.69
3136 3684 0.398696 CCGGAGCTAGAGCCTAGAGA 59.601 60.000 0.00 0.00 43.38 3.10
3142 3690 4.506625 GGAGCTAGAGCCTAGAGATTCTGA 60.507 50.000 11.96 0.00 43.38 3.27
3222 3770 2.096496 CCAAAGAAGCCAGTCTATTGCG 59.904 50.000 0.00 0.00 0.00 4.85
3329 4761 6.716628 AGATTGCCAGAAGTGATACAAAGAAA 59.283 34.615 0.00 0.00 0.00 2.52
3358 4800 6.804770 ATAGACACGAGAGGATATACACAC 57.195 41.667 0.00 0.00 0.00 3.82
3360 4802 3.538591 ACACGAGAGGATATACACACGA 58.461 45.455 9.01 0.00 0.00 4.35
3361 4803 3.560481 ACACGAGAGGATATACACACGAG 59.440 47.826 9.01 3.99 0.00 4.18
3362 4804 3.560481 CACGAGAGGATATACACACGAGT 59.440 47.826 9.01 0.00 0.00 4.18
3363 4805 4.035324 CACGAGAGGATATACACACGAGTT 59.965 45.833 9.01 0.00 0.00 3.01
3364 4806 4.639310 ACGAGAGGATATACACACGAGTTT 59.361 41.667 9.01 0.00 0.00 2.66
3365 4807 5.819379 ACGAGAGGATATACACACGAGTTTA 59.181 40.000 9.01 0.00 0.00 2.01
3366 4808 6.018098 ACGAGAGGATATACACACGAGTTTAG 60.018 42.308 9.01 0.00 0.00 1.85
3367 4809 6.018098 CGAGAGGATATACACACGAGTTTAGT 60.018 42.308 0.00 0.00 0.00 2.24
3368 4810 7.028926 AGAGGATATACACACGAGTTTAGTG 57.971 40.000 0.00 0.00 44.57 2.74
3369 4811 5.589192 AGGATATACACACGAGTTTAGTGC 58.411 41.667 0.00 0.00 42.94 4.40
3381 4828 6.468319 CACGAGTTTAGTGCAGTAGTACATAC 59.532 42.308 14.62 0.00 32.20 2.39
3390 4837 4.943093 TGCAGTAGTACATACGAACCAGTA 59.057 41.667 2.52 0.00 39.55 2.74
3409 4856 8.140112 ACCAGTAACAGAAACTAATCAGATCT 57.860 34.615 0.00 0.00 0.00 2.75
3481 4928 4.940046 AGTATGTGCCAACAGAAGAATCAG 59.060 41.667 0.00 0.00 40.39 2.90
3568 5017 7.710475 TGGAAGACAAAAATCTGTTCAATTTCC 59.290 33.333 0.00 0.00 0.00 3.13
3569 5018 7.096065 GGAAGACAAAAATCTGTTCAATTTCCG 60.096 37.037 0.00 0.00 0.00 4.30
3584 5033 2.341452 TCCGCACGGGAGATCTATG 58.659 57.895 9.58 0.00 40.94 2.23
3590 5039 2.171840 CACGGGAGATCTATGGGTAGG 58.828 57.143 0.00 0.00 0.00 3.18
3593 5042 1.903183 GGGAGATCTATGGGTAGGTGC 59.097 57.143 0.00 0.00 0.00 5.01
3610 5059 1.037493 TGCTGTCGTAGTGGTTGTCT 58.963 50.000 0.00 0.00 0.00 3.41
3625 5074 1.953559 TGTCTGTGAACAGCAAGGTC 58.046 50.000 5.55 0.00 43.46 3.85
3704 5161 1.400846 CTGCTCAACACCATCATCTGC 59.599 52.381 0.00 0.00 0.00 4.26
3712 5169 2.840038 ACACCATCATCTGCACTTAGGA 59.160 45.455 0.00 0.00 0.00 2.94
3713 5170 3.264193 ACACCATCATCTGCACTTAGGAA 59.736 43.478 0.00 0.00 0.00 3.36
3720 5177 0.036732 CTGCACTTAGGAAGCCACCA 59.963 55.000 0.00 0.00 0.00 4.17
3722 5179 1.075374 TGCACTTAGGAAGCCACCATT 59.925 47.619 0.00 0.00 0.00 3.16
3764 5221 0.035317 GCACCACTGTGACATCTCCA 59.965 55.000 9.86 0.00 45.76 3.86
3792 5249 4.572795 GCTGCTAGTAATCTGAGGAAAACC 59.427 45.833 0.00 0.00 0.00 3.27
3802 5259 3.625764 TCTGAGGAAAACCAAAACTGACG 59.374 43.478 0.00 0.00 0.00 4.35
3840 5298 4.558226 ACATGAGTTAGGATGAACTGCA 57.442 40.909 0.00 0.00 39.79 4.41
3841 5299 4.910195 ACATGAGTTAGGATGAACTGCAA 58.090 39.130 0.00 0.00 39.79 4.08
3842 5300 4.940046 ACATGAGTTAGGATGAACTGCAAG 59.060 41.667 0.00 0.00 39.79 4.01
3853 5311 5.295540 GGATGAACTGCAAGAAAGATAGGTC 59.704 44.000 0.00 0.00 37.43 3.85
3857 5315 2.854777 CTGCAAGAAAGATAGGTCGACG 59.145 50.000 9.92 0.00 34.07 5.12
3872 5330 3.487209 GGTCGACGACTGAAGGATAAGTC 60.487 52.174 25.87 2.38 39.57 3.01
3881 5339 4.691216 ACTGAAGGATAAGTCGAAAAGTGC 59.309 41.667 0.00 0.00 0.00 4.40
3889 5347 6.073222 GGATAAGTCGAAAAGTGCTTTCTCAA 60.073 38.462 0.00 0.00 41.23 3.02
3892 5350 4.576463 AGTCGAAAAGTGCTTTCTCAATGT 59.424 37.500 0.00 0.00 41.23 2.71
3893 5351 5.066505 AGTCGAAAAGTGCTTTCTCAATGTT 59.933 36.000 0.00 0.00 41.23 2.71
3896 5354 6.472163 TCGAAAAGTGCTTTCTCAATGTTTTC 59.528 34.615 0.00 0.00 41.23 2.29
3902 5360 8.862550 AGTGCTTTCTCAATGTTTTCTTTTAG 57.137 30.769 0.00 0.00 0.00 1.85
3904 5362 9.301153 GTGCTTTCTCAATGTTTTCTTTTAGAA 57.699 29.630 0.00 0.00 30.63 2.10
3942 5400 9.587772 TCTATAATAAGTGCTGAAGAACTTGAC 57.412 33.333 13.12 0.00 43.51 3.18
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 2.668212 CCGGCGAGCTGTGGAAAA 60.668 61.111 9.30 0.00 0.00 2.29
1 2 3.876589 GACCGGCGAGCTGTGGAAA 62.877 63.158 9.30 0.00 0.00 3.13
2 3 4.373116 GACCGGCGAGCTGTGGAA 62.373 66.667 9.30 0.00 0.00 3.53
10 11 4.824515 AGAGGAGGGACCGGCGAG 62.825 72.222 9.30 0.06 44.74 5.03
11 12 4.377760 AAGAGGAGGGACCGGCGA 62.378 66.667 9.30 0.00 44.74 5.54
12 13 4.148825 CAAGAGGAGGGACCGGCG 62.149 72.222 0.00 0.00 44.74 6.46
13 14 3.787001 CCAAGAGGAGGGACCGGC 61.787 72.222 0.00 0.00 44.74 6.13
14 15 3.787001 GCCAAGAGGAGGGACCGG 61.787 72.222 0.00 0.00 44.74 5.28
15 16 3.787001 GGCCAAGAGGAGGGACCG 61.787 72.222 0.00 0.00 44.74 4.79
16 17 3.787001 CGGCCAAGAGGAGGGACC 61.787 72.222 2.24 0.00 36.89 4.46
17 18 1.627297 AATCGGCCAAGAGGAGGGAC 61.627 60.000 2.24 0.00 36.89 4.46
18 19 1.306997 AATCGGCCAAGAGGAGGGA 60.307 57.895 2.24 0.00 36.89 4.20
19 20 1.147153 GAATCGGCCAAGAGGAGGG 59.853 63.158 2.24 0.00 36.89 4.30
20 21 1.147153 GGAATCGGCCAAGAGGAGG 59.853 63.158 2.24 0.00 36.89 4.30
21 22 1.147153 GGGAATCGGCCAAGAGGAG 59.853 63.158 2.24 0.00 36.89 3.69
22 23 1.306997 AGGGAATCGGCCAAGAGGA 60.307 57.895 2.24 0.00 36.89 3.71
23 24 1.153086 CAGGGAATCGGCCAAGAGG 60.153 63.158 2.24 0.00 38.23 3.69
24 25 0.462759 GACAGGGAATCGGCCAAGAG 60.463 60.000 2.24 0.00 0.00 2.85
25 26 1.602237 GACAGGGAATCGGCCAAGA 59.398 57.895 2.24 0.00 0.00 3.02
26 27 1.815421 CGACAGGGAATCGGCCAAG 60.815 63.158 2.24 0.00 35.92 3.61
27 28 2.238847 CTCGACAGGGAATCGGCCAA 62.239 60.000 2.24 0.00 40.05 4.52
28 29 2.682136 TCGACAGGGAATCGGCCA 60.682 61.111 2.24 0.00 40.05 5.36
29 30 2.107141 CTCGACAGGGAATCGGCC 59.893 66.667 0.00 0.00 40.05 6.13
30 31 2.579684 AAGCTCGACAGGGAATCGGC 62.580 60.000 0.00 0.00 40.05 5.54
31 32 0.807667 CAAGCTCGACAGGGAATCGG 60.808 60.000 0.00 0.00 40.05 4.18
32 33 0.807667 CCAAGCTCGACAGGGAATCG 60.808 60.000 0.00 0.00 41.00 3.34
33 34 1.092345 GCCAAGCTCGACAGGGAATC 61.092 60.000 0.00 0.00 0.00 2.52
34 35 1.078143 GCCAAGCTCGACAGGGAAT 60.078 57.895 0.00 0.00 0.00 3.01
35 36 2.347490 GCCAAGCTCGACAGGGAA 59.653 61.111 0.00 0.00 0.00 3.97
36 37 4.069232 CGCCAAGCTCGACAGGGA 62.069 66.667 0.00 0.00 0.00 4.20
55 56 4.379243 AGCTCACGCCAACGGAGG 62.379 66.667 0.00 0.00 46.04 4.30
56 57 2.811317 GAGCTCACGCCAACGGAG 60.811 66.667 9.40 0.00 46.04 4.63
57 58 4.373116 GGAGCTCACGCCAACGGA 62.373 66.667 17.19 0.00 46.04 4.69
60 61 3.112709 GTCGGAGCTCACGCCAAC 61.113 66.667 17.19 7.48 35.00 3.77
61 62 4.373116 GGTCGGAGCTCACGCCAA 62.373 66.667 17.19 0.00 35.00 4.52
64 65 4.838486 CTCGGTCGGAGCTCACGC 62.838 72.222 17.19 11.96 35.63 5.34
65 66 4.180946 CCTCGGTCGGAGCTCACG 62.181 72.222 17.19 16.35 41.71 4.35
66 67 4.500116 GCCTCGGTCGGAGCTCAC 62.500 72.222 17.19 5.80 41.71 3.51
67 68 4.742649 AGCCTCGGTCGGAGCTCA 62.743 66.667 17.19 0.00 41.71 4.26
68 69 3.418744 GAAGCCTCGGTCGGAGCTC 62.419 68.421 4.71 4.71 41.71 4.09
69 70 3.453679 GAAGCCTCGGTCGGAGCT 61.454 66.667 5.58 0.00 41.71 4.09
70 71 2.892542 GAAGAAGCCTCGGTCGGAGC 62.893 65.000 1.90 0.00 41.71 4.70
71 72 1.139947 GAAGAAGCCTCGGTCGGAG 59.860 63.158 0.44 0.44 42.75 4.63
72 73 1.605451 TGAAGAAGCCTCGGTCGGA 60.605 57.895 0.00 0.00 0.00 4.55
73 74 1.446272 GTGAAGAAGCCTCGGTCGG 60.446 63.158 0.00 0.00 0.00 4.79
74 75 0.108615 ATGTGAAGAAGCCTCGGTCG 60.109 55.000 0.00 0.00 0.00 4.79
75 76 1.363744 CATGTGAAGAAGCCTCGGTC 58.636 55.000 0.00 0.00 0.00 4.79
76 77 0.674895 GCATGTGAAGAAGCCTCGGT 60.675 55.000 0.00 0.00 0.00 4.69
77 78 0.392193 AGCATGTGAAGAAGCCTCGG 60.392 55.000 0.00 0.00 0.00 4.63
78 79 1.396301 GAAGCATGTGAAGAAGCCTCG 59.604 52.381 0.00 0.00 0.00 4.63
79 80 2.709213 AGAAGCATGTGAAGAAGCCTC 58.291 47.619 0.00 0.00 0.00 4.70
80 81 2.875094 AGAAGCATGTGAAGAAGCCT 57.125 45.000 0.00 0.00 0.00 4.58
81 82 3.930634 AAAGAAGCATGTGAAGAAGCC 57.069 42.857 0.00 0.00 0.00 4.35
82 83 7.201299 CGAATAAAAAGAAGCATGTGAAGAAGC 60.201 37.037 0.00 0.00 0.00 3.86
83 84 7.201299 GCGAATAAAAAGAAGCATGTGAAGAAG 60.201 37.037 0.00 0.00 0.00 2.85
84 85 6.582295 GCGAATAAAAAGAAGCATGTGAAGAA 59.418 34.615 0.00 0.00 0.00 2.52
85 86 6.086222 GCGAATAAAAAGAAGCATGTGAAGA 58.914 36.000 0.00 0.00 0.00 2.87
86 87 5.287035 GGCGAATAAAAAGAAGCATGTGAAG 59.713 40.000 0.00 0.00 0.00 3.02
87 88 5.160641 GGCGAATAAAAAGAAGCATGTGAA 58.839 37.500 0.00 0.00 0.00 3.18
88 89 4.217334 TGGCGAATAAAAAGAAGCATGTGA 59.783 37.500 0.00 0.00 0.00 3.58
89 90 4.324402 GTGGCGAATAAAAAGAAGCATGTG 59.676 41.667 0.00 0.00 0.00 3.21
90 91 4.485163 GTGGCGAATAAAAAGAAGCATGT 58.515 39.130 0.00 0.00 0.00 3.21
91 92 3.543494 CGTGGCGAATAAAAAGAAGCATG 59.457 43.478 0.00 0.00 0.00 4.06
92 93 3.427503 CCGTGGCGAATAAAAAGAAGCAT 60.428 43.478 0.00 0.00 0.00 3.79
93 94 2.095466 CCGTGGCGAATAAAAAGAAGCA 60.095 45.455 0.00 0.00 0.00 3.91
94 95 2.515912 CCGTGGCGAATAAAAAGAAGC 58.484 47.619 0.00 0.00 0.00 3.86
95 96 2.731027 GCCCGTGGCGAATAAAAAGAAG 60.731 50.000 0.00 0.00 39.62 2.85
96 97 1.200484 GCCCGTGGCGAATAAAAAGAA 59.800 47.619 0.00 0.00 39.62 2.52
97 98 0.806241 GCCCGTGGCGAATAAAAAGA 59.194 50.000 0.00 0.00 39.62 2.52
98 99 3.322526 GCCCGTGGCGAATAAAAAG 57.677 52.632 0.00 0.00 39.62 2.27
121 122 4.619227 ACGACCCACCACTTGCCG 62.619 66.667 0.00 0.00 0.00 5.69
122 123 2.668550 GACGACCCACCACTTGCC 60.669 66.667 0.00 0.00 0.00 4.52
123 124 3.041940 CGACGACCCACCACTTGC 61.042 66.667 0.00 0.00 0.00 4.01
124 125 2.357034 CCGACGACCCACCACTTG 60.357 66.667 0.00 0.00 0.00 3.16
125 126 3.622826 CCCGACGACCCACCACTT 61.623 66.667 0.00 0.00 0.00 3.16
126 127 3.899545 ATCCCGACGACCCACCACT 62.900 63.158 0.00 0.00 0.00 4.00
127 128 2.847435 GAATCCCGACGACCCACCAC 62.847 65.000 0.00 0.00 0.00 4.16
128 129 2.605295 AATCCCGACGACCCACCA 60.605 61.111 0.00 0.00 0.00 4.17
129 130 2.186125 GAATCCCGACGACCCACC 59.814 66.667 0.00 0.00 0.00 4.61
130 131 2.202703 CGAATCCCGACGACCCAC 60.203 66.667 0.00 0.00 41.76 4.61
131 132 4.137872 GCGAATCCCGACGACCCA 62.138 66.667 0.00 0.00 41.76 4.51
132 133 3.441011 ATGCGAATCCCGACGACCC 62.441 63.158 0.00 0.00 41.76 4.46
133 134 1.949631 GATGCGAATCCCGACGACC 60.950 63.158 0.00 0.00 41.76 4.79
134 135 2.293627 CGATGCGAATCCCGACGAC 61.294 63.158 0.00 0.00 41.76 4.34
135 136 2.025584 CGATGCGAATCCCGACGA 59.974 61.111 0.00 0.00 41.76 4.20
136 137 2.278596 ACGATGCGAATCCCGACG 60.279 61.111 0.00 0.00 41.76 5.12
137 138 2.293627 CGACGATGCGAATCCCGAC 61.294 63.158 6.94 0.00 41.76 4.79
138 139 2.025584 CGACGATGCGAATCCCGA 59.974 61.111 6.94 0.00 41.76 5.14
139 140 3.030308 CCGACGATGCGAATCCCG 61.030 66.667 0.00 1.85 42.21 5.14
140 141 3.338676 GCCGACGATGCGAATCCC 61.339 66.667 0.00 0.00 0.00 3.85
141 142 3.338676 GGCCGACGATGCGAATCC 61.339 66.667 0.00 0.00 0.00 3.01
142 143 1.956170 ATGGCCGACGATGCGAATC 60.956 57.895 0.00 0.00 0.00 2.52
143 144 2.108976 ATGGCCGACGATGCGAAT 59.891 55.556 0.00 0.00 0.00 3.34
144 145 2.642996 ATCATGGCCGACGATGCGAA 62.643 55.000 0.00 0.00 0.00 4.70
145 146 3.150647 ATCATGGCCGACGATGCGA 62.151 57.895 0.00 0.00 0.00 5.10
146 147 2.662857 ATCATGGCCGACGATGCG 60.663 61.111 0.00 0.00 0.00 4.73
147 148 2.610694 CCATCATGGCCGACGATGC 61.611 63.158 18.68 0.00 36.12 3.91
148 149 0.321034 ATCCATCATGGCCGACGATG 60.321 55.000 17.64 17.64 37.47 3.84
149 150 0.321034 CATCCATCATGGCCGACGAT 60.321 55.000 0.00 0.00 37.47 3.73
150 151 1.069596 CATCCATCATGGCCGACGA 59.930 57.895 0.00 0.00 37.47 4.20
151 152 1.962822 CCATCCATCATGGCCGACG 60.963 63.158 0.00 0.00 46.18 5.12
152 153 4.069869 CCATCCATCATGGCCGAC 57.930 61.111 0.00 0.00 46.18 4.79
158 159 0.697079 CCCTCCCTCCATCCATCATG 59.303 60.000 0.00 0.00 0.00 3.07
159 160 0.477202 CCCCTCCCTCCATCCATCAT 60.477 60.000 0.00 0.00 0.00 2.45
160 161 1.073474 CCCCTCCCTCCATCCATCA 60.073 63.158 0.00 0.00 0.00 3.07
161 162 2.533463 GCCCCTCCCTCCATCCATC 61.533 68.421 0.00 0.00 0.00 3.51
162 163 2.451294 GCCCCTCCCTCCATCCAT 60.451 66.667 0.00 0.00 0.00 3.41
163 164 3.594747 TTGCCCCTCCCTCCATCCA 62.595 63.158 0.00 0.00 0.00 3.41
164 165 2.696125 TTGCCCCTCCCTCCATCC 60.696 66.667 0.00 0.00 0.00 3.51
165 166 2.761465 CCTTGCCCCTCCCTCCATC 61.761 68.421 0.00 0.00 0.00 3.51
166 167 2.697644 CCTTGCCCCTCCCTCCAT 60.698 66.667 0.00 0.00 0.00 3.41
194 195 3.775654 CACGCCCTCCACTCTCCC 61.776 72.222 0.00 0.00 0.00 4.30
195 196 3.775654 CCACGCCCTCCACTCTCC 61.776 72.222 0.00 0.00 0.00 3.71
196 197 4.459089 GCCACGCCCTCCACTCTC 62.459 72.222 0.00 0.00 0.00 3.20
235 236 3.361977 CACCAAAACCCTCCCGCG 61.362 66.667 0.00 0.00 0.00 6.46
236 237 2.987355 TTCCACCAAAACCCTCCCGC 62.987 60.000 0.00 0.00 0.00 6.13
237 238 0.468400 TTTCCACCAAAACCCTCCCG 60.468 55.000 0.00 0.00 0.00 5.14
238 239 1.133294 TCTTTCCACCAAAACCCTCCC 60.133 52.381 0.00 0.00 0.00 4.30
239 240 2.158519 TCTCTTTCCACCAAAACCCTCC 60.159 50.000 0.00 0.00 0.00 4.30
240 241 3.149981 CTCTCTTTCCACCAAAACCCTC 58.850 50.000 0.00 0.00 0.00 4.30
241 242 2.158460 CCTCTCTTTCCACCAAAACCCT 60.158 50.000 0.00 0.00 0.00 4.34
242 243 2.239400 CCTCTCTTTCCACCAAAACCC 58.761 52.381 0.00 0.00 0.00 4.11
243 244 2.158519 TCCCTCTCTTTCCACCAAAACC 60.159 50.000 0.00 0.00 0.00 3.27
244 245 3.223674 TCCCTCTCTTTCCACCAAAAC 57.776 47.619 0.00 0.00 0.00 2.43
245 246 3.963476 TTCCCTCTCTTTCCACCAAAA 57.037 42.857 0.00 0.00 0.00 2.44
246 247 3.204382 ACTTTCCCTCTCTTTCCACCAAA 59.796 43.478 0.00 0.00 0.00 3.28
247 248 2.783510 ACTTTCCCTCTCTTTCCACCAA 59.216 45.455 0.00 0.00 0.00 3.67
248 249 2.106511 CACTTTCCCTCTCTTTCCACCA 59.893 50.000 0.00 0.00 0.00 4.17
249 250 2.372172 TCACTTTCCCTCTCTTTCCACC 59.628 50.000 0.00 0.00 0.00 4.61
250 251 3.403968 GTCACTTTCCCTCTCTTTCCAC 58.596 50.000 0.00 0.00 0.00 4.02
251 252 2.372172 GGTCACTTTCCCTCTCTTTCCA 59.628 50.000 0.00 0.00 0.00 3.53
252 253 2.613223 CGGTCACTTTCCCTCTCTTTCC 60.613 54.545 0.00 0.00 0.00 3.13
253 254 2.613223 CCGGTCACTTTCCCTCTCTTTC 60.613 54.545 0.00 0.00 0.00 2.62
254 255 1.348036 CCGGTCACTTTCCCTCTCTTT 59.652 52.381 0.00 0.00 0.00 2.52
255 256 0.977395 CCGGTCACTTTCCCTCTCTT 59.023 55.000 0.00 0.00 0.00 2.85
256 257 1.545706 GCCGGTCACTTTCCCTCTCT 61.546 60.000 1.90 0.00 0.00 3.10
257 258 1.079057 GCCGGTCACTTTCCCTCTC 60.079 63.158 1.90 0.00 0.00 3.20
258 259 1.536662 AGCCGGTCACTTTCCCTCT 60.537 57.895 1.90 0.00 0.00 3.69
259 260 1.376037 CAGCCGGTCACTTTCCCTC 60.376 63.158 1.90 0.00 0.00 4.30
260 261 2.147387 ACAGCCGGTCACTTTCCCT 61.147 57.895 1.90 0.00 0.00 4.20
261 262 1.966451 CACAGCCGGTCACTTTCCC 60.966 63.158 1.90 0.00 0.00 3.97
262 263 2.617274 GCACAGCCGGTCACTTTCC 61.617 63.158 1.90 0.00 0.00 3.13
263 264 2.617274 GGCACAGCCGGTCACTTTC 61.617 63.158 1.90 0.00 39.62 2.62
264 265 2.594592 GGCACAGCCGGTCACTTT 60.595 61.111 1.90 0.00 39.62 2.66
289 290 4.097361 GTCCTTCCCTGGCCCGTC 62.097 72.222 0.00 0.00 0.00 4.79
290 291 4.974438 TGTCCTTCCCTGGCCCGT 62.974 66.667 0.00 0.00 0.00 5.28
291 292 3.628646 CTTGTCCTTCCCTGGCCCG 62.629 68.421 0.00 0.00 0.00 6.13
292 293 2.356667 CTTGTCCTTCCCTGGCCC 59.643 66.667 0.00 0.00 0.00 5.80
293 294 2.356667 CCTTGTCCTTCCCTGGCC 59.643 66.667 0.00 0.00 0.00 5.36
294 295 2.356667 CCCTTGTCCTTCCCTGGC 59.643 66.667 0.00 0.00 0.00 4.85
295 296 2.356667 GCCCTTGTCCTTCCCTGG 59.643 66.667 0.00 0.00 0.00 4.45
296 297 2.045926 CGCCCTTGTCCTTCCCTG 60.046 66.667 0.00 0.00 0.00 4.45
297 298 4.035102 GCGCCCTTGTCCTTCCCT 62.035 66.667 0.00 0.00 0.00 4.20
298 299 2.666098 TAGCGCCCTTGTCCTTCCC 61.666 63.158 2.29 0.00 0.00 3.97
299 300 1.449778 GTAGCGCCCTTGTCCTTCC 60.450 63.158 2.29 0.00 0.00 3.46
300 301 1.019805 GTGTAGCGCCCTTGTCCTTC 61.020 60.000 2.29 0.00 0.00 3.46
301 302 1.003718 GTGTAGCGCCCTTGTCCTT 60.004 57.895 2.29 0.00 0.00 3.36
302 303 2.663196 GTGTAGCGCCCTTGTCCT 59.337 61.111 2.29 0.00 0.00 3.85
303 304 2.813908 CGTGTAGCGCCCTTGTCC 60.814 66.667 2.29 0.00 0.00 4.02
314 315 1.732259 GGTTGAATGGACAGCGTGTAG 59.268 52.381 0.00 0.00 0.00 2.74
315 316 1.803334 GGTTGAATGGACAGCGTGTA 58.197 50.000 0.00 0.00 0.00 2.90
316 317 1.227999 CGGTTGAATGGACAGCGTGT 61.228 55.000 0.00 0.00 0.00 4.49
317 318 1.497278 CGGTTGAATGGACAGCGTG 59.503 57.895 0.00 0.00 0.00 5.34
318 319 2.325082 GCGGTTGAATGGACAGCGT 61.325 57.895 0.00 0.00 33.98 5.07
319 320 1.851021 TTGCGGTTGAATGGACAGCG 61.851 55.000 0.00 0.00 40.39 5.18
320 321 0.313672 TTTGCGGTTGAATGGACAGC 59.686 50.000 0.00 0.00 38.45 4.40
321 322 1.608590 AGTTTGCGGTTGAATGGACAG 59.391 47.619 0.00 0.00 0.00 3.51
322 323 1.606668 GAGTTTGCGGTTGAATGGACA 59.393 47.619 0.00 0.00 0.00 4.02
323 324 1.399727 CGAGTTTGCGGTTGAATGGAC 60.400 52.381 0.00 0.00 0.00 4.02
324 325 0.871722 CGAGTTTGCGGTTGAATGGA 59.128 50.000 0.00 0.00 0.00 3.41
325 326 0.591170 ACGAGTTTGCGGTTGAATGG 59.409 50.000 0.00 0.00 35.12 3.16
326 327 1.531149 AGACGAGTTTGCGGTTGAATG 59.469 47.619 0.00 0.00 35.12 2.67
327 328 1.798813 GAGACGAGTTTGCGGTTGAAT 59.201 47.619 0.00 0.00 35.12 2.57
328 329 1.214367 GAGACGAGTTTGCGGTTGAA 58.786 50.000 0.00 0.00 35.12 2.69
329 330 0.103390 TGAGACGAGTTTGCGGTTGA 59.897 50.000 0.00 0.00 35.12 3.18
330 331 0.934496 TTGAGACGAGTTTGCGGTTG 59.066 50.000 0.00 0.00 35.12 3.77
331 332 1.329599 GTTTGAGACGAGTTTGCGGTT 59.670 47.619 0.00 0.00 35.12 4.44
332 333 0.935196 GTTTGAGACGAGTTTGCGGT 59.065 50.000 0.00 0.00 35.12 5.68
333 334 1.217882 AGTTTGAGACGAGTTTGCGG 58.782 50.000 0.00 0.00 35.12 5.69
334 335 2.599848 CCAAGTTTGAGACGAGTTTGCG 60.600 50.000 0.00 0.00 37.29 4.85
335 336 2.287009 CCCAAGTTTGAGACGAGTTTGC 60.287 50.000 0.00 0.00 0.00 3.68
336 337 2.943033 ACCCAAGTTTGAGACGAGTTTG 59.057 45.455 0.00 0.00 0.00 2.93
337 338 3.203716 GACCCAAGTTTGAGACGAGTTT 58.796 45.455 0.00 0.00 0.00 2.66
338 339 2.802057 CGACCCAAGTTTGAGACGAGTT 60.802 50.000 0.00 0.00 0.00 3.01
339 340 1.269621 CGACCCAAGTTTGAGACGAGT 60.270 52.381 0.00 0.00 0.00 4.18
340 341 1.000607 TCGACCCAAGTTTGAGACGAG 60.001 52.381 0.00 0.00 0.00 4.18
341 342 1.000607 CTCGACCCAAGTTTGAGACGA 60.001 52.381 0.00 1.90 33.08 4.20
342 343 1.000607 TCTCGACCCAAGTTTGAGACG 60.001 52.381 0.00 0.00 34.63 4.18
343 344 2.814280 TCTCGACCCAAGTTTGAGAC 57.186 50.000 0.00 0.00 34.63 3.36
344 345 3.557054 CCATTCTCGACCCAAGTTTGAGA 60.557 47.826 0.00 0.00 36.54 3.27
345 346 2.744202 CCATTCTCGACCCAAGTTTGAG 59.256 50.000 0.00 0.00 32.76 3.02
346 347 2.370519 TCCATTCTCGACCCAAGTTTGA 59.629 45.455 0.00 0.00 0.00 2.69
347 348 2.778299 TCCATTCTCGACCCAAGTTTG 58.222 47.619 0.00 0.00 0.00 2.93
348 349 3.009033 TGATCCATTCTCGACCCAAGTTT 59.991 43.478 0.00 0.00 0.00 2.66
349 350 2.571653 TGATCCATTCTCGACCCAAGTT 59.428 45.455 0.00 0.00 0.00 2.66
350 351 2.187958 TGATCCATTCTCGACCCAAGT 58.812 47.619 0.00 0.00 0.00 3.16
351 352 2.988010 TGATCCATTCTCGACCCAAG 57.012 50.000 0.00 0.00 0.00 3.61
352 353 3.712016 TTTGATCCATTCTCGACCCAA 57.288 42.857 0.00 0.00 0.00 4.12
353 354 3.712016 TTTTGATCCATTCTCGACCCA 57.288 42.857 0.00 0.00 0.00 4.51
354 355 3.181510 CGTTTTTGATCCATTCTCGACCC 60.182 47.826 0.00 0.00 0.00 4.46
355 356 3.181510 CCGTTTTTGATCCATTCTCGACC 60.182 47.826 0.00 0.00 0.00 4.79
356 357 3.682858 TCCGTTTTTGATCCATTCTCGAC 59.317 43.478 0.00 0.00 0.00 4.20
357 358 3.682858 GTCCGTTTTTGATCCATTCTCGA 59.317 43.478 0.00 0.00 0.00 4.04
358 359 3.435327 TGTCCGTTTTTGATCCATTCTCG 59.565 43.478 0.00 0.00 0.00 4.04
359 360 4.695455 TCTGTCCGTTTTTGATCCATTCTC 59.305 41.667 0.00 0.00 0.00 2.87
360 361 4.651778 TCTGTCCGTTTTTGATCCATTCT 58.348 39.130 0.00 0.00 0.00 2.40
361 362 5.371115 TTCTGTCCGTTTTTGATCCATTC 57.629 39.130 0.00 0.00 0.00 2.67
362 363 5.782893 TTTCTGTCCGTTTTTGATCCATT 57.217 34.783 0.00 0.00 0.00 3.16
363 364 5.528870 GTTTTCTGTCCGTTTTTGATCCAT 58.471 37.500 0.00 0.00 0.00 3.41
364 365 4.496673 CGTTTTCTGTCCGTTTTTGATCCA 60.497 41.667 0.00 0.00 0.00 3.41
365 366 3.972502 CGTTTTCTGTCCGTTTTTGATCC 59.027 43.478 0.00 0.00 0.00 3.36
366 367 3.972502 CCGTTTTCTGTCCGTTTTTGATC 59.027 43.478 0.00 0.00 0.00 2.92
367 368 3.628487 TCCGTTTTCTGTCCGTTTTTGAT 59.372 39.130 0.00 0.00 0.00 2.57
368 369 3.008330 TCCGTTTTCTGTCCGTTTTTGA 58.992 40.909 0.00 0.00 0.00 2.69
369 370 3.103007 GTCCGTTTTCTGTCCGTTTTTG 58.897 45.455 0.00 0.00 0.00 2.44
370 371 2.223089 CGTCCGTTTTCTGTCCGTTTTT 60.223 45.455 0.00 0.00 0.00 1.94
371 372 1.328374 CGTCCGTTTTCTGTCCGTTTT 59.672 47.619 0.00 0.00 0.00 2.43
372 373 0.932399 CGTCCGTTTTCTGTCCGTTT 59.068 50.000 0.00 0.00 0.00 3.60
373 374 0.102844 TCGTCCGTTTTCTGTCCGTT 59.897 50.000 0.00 0.00 0.00 4.44
374 375 0.316204 ATCGTCCGTTTTCTGTCCGT 59.684 50.000 0.00 0.00 0.00 4.69
375 376 0.713883 CATCGTCCGTTTTCTGTCCG 59.286 55.000 0.00 0.00 0.00 4.79
376 377 1.076332 CCATCGTCCGTTTTCTGTCC 58.924 55.000 0.00 0.00 0.00 4.02
377 378 1.725164 GACCATCGTCCGTTTTCTGTC 59.275 52.381 0.00 0.00 32.40 3.51
378 379 1.343465 AGACCATCGTCCGTTTTCTGT 59.657 47.619 0.00 0.00 40.12 3.41
379 380 1.726791 CAGACCATCGTCCGTTTTCTG 59.273 52.381 0.00 0.00 40.12 3.02
380 381 1.343465 ACAGACCATCGTCCGTTTTCT 59.657 47.619 0.00 0.00 40.12 2.52
381 382 1.792006 ACAGACCATCGTCCGTTTTC 58.208 50.000 0.00 0.00 40.12 2.29
382 383 2.249844 AACAGACCATCGTCCGTTTT 57.750 45.000 0.00 0.00 36.43 2.43
383 384 2.249844 AAACAGACCATCGTCCGTTT 57.750 45.000 0.00 0.00 42.27 3.60
384 385 2.353406 CCTAAACAGACCATCGTCCGTT 60.353 50.000 0.00 0.00 40.58 4.44
385 386 1.203994 CCTAAACAGACCATCGTCCGT 59.796 52.381 0.00 0.00 40.12 4.69
386 387 1.922570 CCTAAACAGACCATCGTCCG 58.077 55.000 0.00 0.00 40.12 4.79
387 388 1.653151 GCCTAAACAGACCATCGTCC 58.347 55.000 0.00 0.00 40.12 4.79
388 389 1.066430 TGGCCTAAACAGACCATCGTC 60.066 52.381 3.32 0.00 39.50 4.20
389 390 0.981183 TGGCCTAAACAGACCATCGT 59.019 50.000 3.32 0.00 0.00 3.73
390 391 1.369625 GTGGCCTAAACAGACCATCG 58.630 55.000 3.32 0.00 34.04 3.84
391 392 1.369625 CGTGGCCTAAACAGACCATC 58.630 55.000 3.32 0.00 34.04 3.51
392 393 0.676782 GCGTGGCCTAAACAGACCAT 60.677 55.000 3.32 0.00 34.04 3.55
393 394 1.302192 GCGTGGCCTAAACAGACCA 60.302 57.895 3.32 0.00 0.00 4.02
394 395 2.388232 CGCGTGGCCTAAACAGACC 61.388 63.158 3.32 0.00 0.00 3.85
395 396 1.226030 AACGCGTGGCCTAAACAGAC 61.226 55.000 14.98 0.00 0.00 3.51
396 397 1.070105 AACGCGTGGCCTAAACAGA 59.930 52.632 14.98 0.00 0.00 3.41
397 398 1.206578 CAACGCGTGGCCTAAACAG 59.793 57.895 14.98 0.00 0.00 3.16
398 399 2.255172 CCAACGCGTGGCCTAAACA 61.255 57.895 14.98 0.00 41.72 2.83
399 400 2.559330 CCAACGCGTGGCCTAAAC 59.441 61.111 14.98 0.00 41.72 2.01
407 408 3.726517 CAGGCCTTCCAACGCGTG 61.727 66.667 14.98 7.16 34.91 5.34
410 411 2.564721 AAAGCAGGCCTTCCAACGC 61.565 57.895 0.00 1.34 31.99 4.84
411 412 1.286880 CAAAGCAGGCCTTCCAACG 59.713 57.895 0.00 0.00 31.99 4.10
412 413 0.315251 GACAAAGCAGGCCTTCCAAC 59.685 55.000 0.00 0.00 31.99 3.77
413 414 0.827507 GGACAAAGCAGGCCTTCCAA 60.828 55.000 13.16 0.00 31.99 3.53
414 415 1.228552 GGACAAAGCAGGCCTTCCA 60.229 57.895 13.16 0.00 31.99 3.53
415 416 2.335712 CGGACAAAGCAGGCCTTCC 61.336 63.158 0.00 5.51 31.99 3.46
416 417 1.172812 AACGGACAAAGCAGGCCTTC 61.173 55.000 0.00 0.00 31.99 3.46
417 418 0.755327 AAACGGACAAAGCAGGCCTT 60.755 50.000 0.00 0.00 34.51 4.35
418 419 0.109723 TAAACGGACAAAGCAGGCCT 59.890 50.000 0.00 0.00 0.00 5.19
419 420 0.240145 GTAAACGGACAAAGCAGGCC 59.760 55.000 0.00 0.00 0.00 5.19
420 421 0.240145 GGTAAACGGACAAAGCAGGC 59.760 55.000 0.00 0.00 0.00 4.85
421 422 1.804748 GAGGTAAACGGACAAAGCAGG 59.195 52.381 0.00 0.00 0.00 4.85
422 423 2.767505 AGAGGTAAACGGACAAAGCAG 58.232 47.619 0.00 0.00 0.00 4.24
423 424 2.922740 AGAGGTAAACGGACAAAGCA 57.077 45.000 0.00 0.00 0.00 3.91
424 425 5.027206 GTTTAGAGGTAAACGGACAAAGC 57.973 43.478 0.00 0.00 38.92 3.51
433 434 1.650645 CGCGTCCGTTTAGAGGTAAAC 59.349 52.381 0.00 0.00 43.20 2.01
434 435 1.402720 CCGCGTCCGTTTAGAGGTAAA 60.403 52.381 4.92 0.00 0.00 2.01
435 436 0.171007 CCGCGTCCGTTTAGAGGTAA 59.829 55.000 4.92 0.00 0.00 2.85
436 437 0.676466 TCCGCGTCCGTTTAGAGGTA 60.676 55.000 4.92 0.00 0.00 3.08
437 438 1.973281 TCCGCGTCCGTTTAGAGGT 60.973 57.895 4.92 0.00 0.00 3.85
438 439 1.515736 GTCCGCGTCCGTTTAGAGG 60.516 63.158 4.92 0.00 0.00 3.69
439 440 1.866496 CGTCCGCGTCCGTTTAGAG 60.866 63.158 4.92 0.00 0.00 2.43
440 441 2.176546 CGTCCGCGTCCGTTTAGA 59.823 61.111 4.92 0.00 0.00 2.10
441 442 2.877582 CCGTCCGCGTCCGTTTAG 60.878 66.667 4.92 0.00 36.15 1.85
442 443 3.361158 TCCGTCCGCGTCCGTTTA 61.361 61.111 4.92 0.00 36.15 2.01
448 449 3.823330 ATCCTGTCCGTCCGCGTC 61.823 66.667 4.92 0.00 36.15 5.19
449 450 4.129737 CATCCTGTCCGTCCGCGT 62.130 66.667 4.92 0.00 36.15 6.01
450 451 3.758088 CTCATCCTGTCCGTCCGCG 62.758 68.421 0.00 0.00 37.95 6.46
451 452 1.739338 ATCTCATCCTGTCCGTCCGC 61.739 60.000 0.00 0.00 0.00 5.54
452 453 0.312416 GATCTCATCCTGTCCGTCCG 59.688 60.000 0.00 0.00 0.00 4.79
453 454 0.312416 CGATCTCATCCTGTCCGTCC 59.688 60.000 0.00 0.00 0.00 4.79
454 455 0.318275 GCGATCTCATCCTGTCCGTC 60.318 60.000 0.00 0.00 0.00 4.79
455 456 1.736586 GCGATCTCATCCTGTCCGT 59.263 57.895 0.00 0.00 0.00 4.69
456 457 1.371022 CGCGATCTCATCCTGTCCG 60.371 63.158 0.00 0.00 0.00 4.79
457 458 0.596083 CACGCGATCTCATCCTGTCC 60.596 60.000 15.93 0.00 0.00 4.02
458 459 0.101399 ACACGCGATCTCATCCTGTC 59.899 55.000 15.93 0.00 0.00 3.51
459 460 0.532573 AACACGCGATCTCATCCTGT 59.467 50.000 15.93 0.00 0.00 4.00
460 461 0.926155 CAACACGCGATCTCATCCTG 59.074 55.000 15.93 0.00 0.00 3.86
461 462 0.179100 CCAACACGCGATCTCATCCT 60.179 55.000 15.93 0.00 0.00 3.24
462 463 0.179111 TCCAACACGCGATCTCATCC 60.179 55.000 15.93 0.00 0.00 3.51
463 464 1.203928 CTCCAACACGCGATCTCATC 58.796 55.000 15.93 0.00 0.00 2.92
464 465 0.532573 ACTCCAACACGCGATCTCAT 59.467 50.000 15.93 0.00 0.00 2.90
465 466 0.317160 AACTCCAACACGCGATCTCA 59.683 50.000 15.93 0.00 0.00 3.27
466 467 0.716108 CAACTCCAACACGCGATCTC 59.284 55.000 15.93 0.00 0.00 2.75
467 468 0.670546 CCAACTCCAACACGCGATCT 60.671 55.000 15.93 0.00 0.00 2.75
468 469 1.787847 CCAACTCCAACACGCGATC 59.212 57.895 15.93 0.00 0.00 3.69
469 470 2.325082 GCCAACTCCAACACGCGAT 61.325 57.895 15.93 0.00 0.00 4.58
470 471 2.970324 GCCAACTCCAACACGCGA 60.970 61.111 15.93 0.00 0.00 5.87
471 472 4.025401 GGCCAACTCCAACACGCG 62.025 66.667 3.53 3.53 0.00 6.01
472 473 0.887387 TTAGGCCAACTCCAACACGC 60.887 55.000 5.01 0.00 0.00 5.34
473 474 1.821216 ATTAGGCCAACTCCAACACG 58.179 50.000 5.01 0.00 0.00 4.49
474 475 3.128764 GCTAATTAGGCCAACTCCAACAC 59.871 47.826 14.28 0.00 0.00 3.32
475 476 3.010138 AGCTAATTAGGCCAACTCCAACA 59.990 43.478 14.28 0.00 0.00 3.33
476 477 3.378427 CAGCTAATTAGGCCAACTCCAAC 59.622 47.826 14.28 0.00 0.00 3.77
477 478 3.620488 CAGCTAATTAGGCCAACTCCAA 58.380 45.455 14.28 0.00 0.00 3.53
478 479 2.092429 CCAGCTAATTAGGCCAACTCCA 60.092 50.000 14.28 0.00 0.00 3.86
479 480 2.576615 CCAGCTAATTAGGCCAACTCC 58.423 52.381 14.28 0.00 0.00 3.85
480 481 2.092375 ACCCAGCTAATTAGGCCAACTC 60.092 50.000 14.28 0.00 0.00 3.01
481 482 1.923148 ACCCAGCTAATTAGGCCAACT 59.077 47.619 14.28 0.00 0.00 3.16
482 483 2.437085 ACCCAGCTAATTAGGCCAAC 57.563 50.000 14.28 0.00 0.00 3.77
483 484 5.609284 TCTTATACCCAGCTAATTAGGCCAA 59.391 40.000 14.28 0.00 0.00 4.52
484 485 5.159637 TCTTATACCCAGCTAATTAGGCCA 58.840 41.667 14.28 0.00 0.00 5.36
485 486 5.338463 CCTCTTATACCCAGCTAATTAGGCC 60.338 48.000 14.28 0.00 0.00 5.19
486 487 5.735766 CCTCTTATACCCAGCTAATTAGGC 58.264 45.833 14.28 6.70 0.00 3.93
487 488 5.485708 AGCCTCTTATACCCAGCTAATTAGG 59.514 44.000 14.28 0.90 0.00 2.69
541 542 3.804786 TGGCGATGATAAAGTCCGTTA 57.195 42.857 0.00 0.00 0.00 3.18
545 546 2.481952 GCTGATGGCGATGATAAAGTCC 59.518 50.000 0.00 0.00 0.00 3.85
575 576 3.114616 CTGCACGCGCTTGCTACT 61.115 61.111 34.38 0.00 43.41 2.57
576 577 4.801221 GCTGCACGCGCTTGCTAC 62.801 66.667 34.38 23.88 43.41 3.58
836 883 1.680207 GGAATGCTCTTCTTGGATGGC 59.320 52.381 0.00 0.00 0.00 4.40
939 1043 1.537776 CGATGGAGCAGCTTGAGTAGG 60.538 57.143 0.00 0.00 0.00 3.18
944 1048 0.174389 GTCTCGATGGAGCAGCTTGA 59.826 55.000 0.00 0.00 40.26 3.02
946 1050 0.901124 AAGTCTCGATGGAGCAGCTT 59.099 50.000 0.00 2.20 40.26 3.74
970 1085 2.892373 TGGTTCGATCGACAATTTGC 57.108 45.000 19.26 2.32 0.00 3.68
973 1088 2.097466 GCCATTGGTTCGATCGACAATT 59.903 45.455 23.72 11.84 31.67 2.32
984 1099 0.249955 CCATTGGTGGCCATTGGTTC 59.750 55.000 9.72 0.00 45.05 3.62
1099 1501 1.078214 CCATCCGCTTGAGGCTTGA 60.078 57.895 0.00 0.00 39.13 3.02
1100 1502 1.377725 ACCATCCGCTTGAGGCTTG 60.378 57.895 0.00 0.00 39.13 4.01
1101 1503 1.377725 CACCATCCGCTTGAGGCTT 60.378 57.895 0.00 0.00 39.13 4.35
1102 1504 2.270205 CACCATCCGCTTGAGGCT 59.730 61.111 0.00 0.00 39.13 4.58
1103 1505 2.825836 CCACCATCCGCTTGAGGC 60.826 66.667 0.00 0.00 37.64 4.70
1104 1506 1.153289 CTCCACCATCCGCTTGAGG 60.153 63.158 0.00 0.00 0.00 3.86
1105 1507 1.153289 CCTCCACCATCCGCTTGAG 60.153 63.158 0.00 0.00 0.00 3.02
1290 1693 1.431488 CGGTAGTGACGCCGTAGCTA 61.431 60.000 12.16 0.00 42.73 3.32
1790 2194 2.362077 ACACCAAGGATGTTTGCTTCAC 59.638 45.455 0.00 0.00 30.03 3.18
1857 2261 1.180029 GGTCGGTGTACTCTGGCTTA 58.820 55.000 8.18 0.00 0.00 3.09
1923 2327 0.178998 GGATGTGCTCCATGATGGCT 60.179 55.000 6.59 0.00 44.26 4.75
2160 2564 2.116125 GTGCCCTGGAAGTTGCCT 59.884 61.111 0.00 0.00 0.00 4.75
2181 2585 3.551259 GTCCATGGACACACCGATT 57.449 52.632 35.21 0.00 44.02 3.34
2308 2712 1.429930 TAGTCCAGACTTGGGTTGCA 58.570 50.000 5.49 0.00 45.10 4.08
2331 2735 2.446435 GCTATCTTGGCACCCTTGAAA 58.554 47.619 0.00 0.00 0.00 2.69
2344 2748 2.634940 AGTACGATGCCATGGCTATCTT 59.365 45.455 35.53 27.54 42.51 2.40
2349 2753 1.524621 GCAGTACGATGCCATGGCT 60.525 57.895 35.53 21.86 40.43 4.75
2361 2765 2.977772 ATTGGAGCTCTGAGCAGTAC 57.022 50.000 29.49 12.84 45.56 2.73
2427 2831 4.081309 CCGAGGGAGTTAACATCTTGGTTA 60.081 45.833 8.61 0.00 32.29 2.85
2538 2942 3.535629 CTCAAGGTGGCGCAGGTCA 62.536 63.158 10.83 0.00 0.00 4.02
2616 3020 1.357420 AGGCCACCCATGTCATTTGTA 59.643 47.619 5.01 0.00 0.00 2.41
2794 3198 2.280524 CGAGGTTTCCACGGTGCA 60.281 61.111 1.68 0.00 34.18 4.57
3222 3770 5.880054 ACAGCAATGTACTTGTTGATACC 57.120 39.130 20.30 3.00 45.87 2.73
3322 4754 6.943981 TCTCGTGTCTATTGTTGTTTCTTTG 58.056 36.000 0.00 0.00 0.00 2.77
3329 4761 6.716934 ATATCCTCTCGTGTCTATTGTTGT 57.283 37.500 0.00 0.00 0.00 3.32
3358 4800 5.675877 CGTATGTACTACTGCACTAAACTCG 59.324 44.000 0.00 0.00 0.00 4.18
3360 4802 6.748333 TCGTATGTACTACTGCACTAAACT 57.252 37.500 0.00 0.00 0.00 2.66
3361 4803 6.252228 GGTTCGTATGTACTACTGCACTAAAC 59.748 42.308 0.00 0.00 0.00 2.01
3362 4804 6.072008 TGGTTCGTATGTACTACTGCACTAAA 60.072 38.462 0.00 0.00 0.00 1.85
3363 4805 5.415389 TGGTTCGTATGTACTACTGCACTAA 59.585 40.000 0.00 0.00 0.00 2.24
3364 4806 4.943093 TGGTTCGTATGTACTACTGCACTA 59.057 41.667 0.00 0.00 0.00 2.74
3365 4807 3.760151 TGGTTCGTATGTACTACTGCACT 59.240 43.478 0.00 0.00 0.00 4.40
3366 4808 4.100707 TGGTTCGTATGTACTACTGCAC 57.899 45.455 0.00 0.00 0.00 4.57
3367 4809 3.760151 ACTGGTTCGTATGTACTACTGCA 59.240 43.478 0.00 0.00 0.00 4.41
3368 4810 4.367386 ACTGGTTCGTATGTACTACTGC 57.633 45.455 0.00 0.00 0.00 4.40
3369 4811 6.845302 TGTTACTGGTTCGTATGTACTACTG 58.155 40.000 0.00 0.00 0.00 2.74
3381 4828 6.866770 TCTGATTAGTTTCTGTTACTGGTTCG 59.133 38.462 0.00 0.00 0.00 3.95
3536 4984 7.922278 TGAACAGATTTTTGTCTTCCAGAAATG 59.078 33.333 0.00 0.00 37.83 2.32
3543 4991 7.096065 CGGAAATTGAACAGATTTTTGTCTTCC 60.096 37.037 0.00 0.00 0.00 3.46
3568 5017 1.290324 CCCATAGATCTCCCGTGCG 59.710 63.158 0.00 0.00 0.00 5.34
3569 5018 1.546476 CTACCCATAGATCTCCCGTGC 59.454 57.143 0.00 0.00 0.00 5.34
3584 5033 0.172803 CACTACGACAGCACCTACCC 59.827 60.000 0.00 0.00 0.00 3.69
3590 5039 1.137513 GACAACCACTACGACAGCAC 58.862 55.000 0.00 0.00 0.00 4.40
3593 5042 2.034179 TCACAGACAACCACTACGACAG 59.966 50.000 0.00 0.00 0.00 3.51
3610 5059 1.065491 AGTGTGACCTTGCTGTTCACA 60.065 47.619 6.57 6.57 38.74 3.58
3625 5074 4.271696 TGGAGTTCTCCATGTTAGTGTG 57.728 45.455 16.47 0.00 34.33 3.82
3676 5126 2.031012 TGTTGAGCAGCTCGGTGG 59.969 61.111 17.81 0.00 32.35 4.61
3680 5130 0.671472 TGATGGTGTTGAGCAGCTCG 60.671 55.000 17.81 0.00 45.23 5.03
3704 5161 3.420893 TCAAATGGTGGCTTCCTAAGTG 58.579 45.455 1.63 0.00 0.00 3.16
3712 5169 1.341080 CCCTGTTCAAATGGTGGCTT 58.659 50.000 0.00 0.00 0.00 4.35
3713 5170 0.188342 ACCCTGTTCAAATGGTGGCT 59.812 50.000 0.00 0.00 0.00 4.75
3720 5177 1.165270 GCACGCTACCCTGTTCAAAT 58.835 50.000 0.00 0.00 0.00 2.32
3722 5179 0.602638 CAGCACGCTACCCTGTTCAA 60.603 55.000 0.00 0.00 0.00 2.69
3764 5221 4.141135 TCCTCAGATTACTAGCAGCTACCT 60.141 45.833 0.00 0.00 0.00 3.08
3825 5283 6.749923 ATCTTTCTTGCAGTTCATCCTAAC 57.250 37.500 0.00 0.00 0.00 2.34
3840 5298 4.008330 TCAGTCGTCGACCTATCTTTCTT 58.992 43.478 21.40 0.00 32.18 2.52
3841 5299 3.607741 TCAGTCGTCGACCTATCTTTCT 58.392 45.455 21.40 0.00 32.18 2.52
3842 5300 4.344448 CTTCAGTCGTCGACCTATCTTTC 58.656 47.826 21.40 0.00 32.18 2.62
3857 5315 5.163943 GCACTTTTCGACTTATCCTTCAGTC 60.164 44.000 0.00 0.00 36.78 3.51
3920 5378 7.715249 ACTTGTCAAGTTCTTCAGCACTTATTA 59.285 33.333 12.62 0.00 39.04 0.98
3921 5379 6.543831 ACTTGTCAAGTTCTTCAGCACTTATT 59.456 34.615 12.62 0.00 39.04 1.40
3922 5380 6.058183 ACTTGTCAAGTTCTTCAGCACTTAT 58.942 36.000 12.62 0.00 39.04 1.73
3923 5381 5.428253 ACTTGTCAAGTTCTTCAGCACTTA 58.572 37.500 12.62 0.00 39.04 2.24
3942 5400 8.322906 TGTCAGTTACCATAATCAGAAACTTG 57.677 34.615 0.00 0.00 0.00 3.16
3956 5414 2.294074 GTGCCAGTTTGTCAGTTACCA 58.706 47.619 0.00 0.00 0.00 3.25
3959 5417 5.278266 GCTTAATGTGCCAGTTTGTCAGTTA 60.278 40.000 0.00 0.00 0.00 2.24


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.