Multiple sequence alignment - TraesCS2A01G196300

Loading Multiple Alignment...

Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS2A01G196300 chr2A 100.000 3448 0 0 1 3448 166239306 166242753 0.000000e+00 6368.0
1 TraesCS2A01G196300 chr2A 100.000 223 0 0 3712 3934 166243017 166243239 2.830000e-111 412.0
2 TraesCS2A01G196300 chr2A 89.423 208 8 4 7 208 166234200 166234399 2.350000e-62 250.0
3 TraesCS2A01G196300 chr2A 97.000 100 2 1 1916 2015 60738665 60738763 2.430000e-37 167.0
4 TraesCS2A01G196300 chr2D 96.277 1719 52 4 209 1924 156548761 156550470 0.000000e+00 2809.0
5 TraesCS2A01G196300 chr2D 97.024 672 16 1 2039 2706 156550463 156551134 0.000000e+00 1127.0
6 TraesCS2A01G196300 chr2D 96.395 638 12 2 2701 3338 156555558 156556184 0.000000e+00 1040.0
7 TraesCS2A01G196300 chr2D 95.385 195 9 0 3740 3934 156556468 156556662 1.060000e-80 311.0
8 TraesCS2A01G196300 chr2D 100.000 29 0 0 3712 3740 156556413 156556441 2.000000e-03 54.7
9 TraesCS2A01G196300 chr7A 80.255 1018 174 13 660 1675 55356136 55357128 0.000000e+00 741.0
10 TraesCS2A01G196300 chr7A 93.043 115 5 3 1924 2037 730487928 730488040 8.750000e-37 165.0
11 TraesCS2A01G196300 chr7A 91.057 123 7 4 1924 2044 225617633 225617513 3.150000e-36 163.0
12 TraesCS2A01G196300 chr4A 79.392 1019 180 16 660 1675 667849085 667850076 0.000000e+00 691.0
13 TraesCS2A01G196300 chr4A 90.476 210 9 3 1 208 374691139 374690939 2.330000e-67 267.0
14 TraesCS2A01G196300 chr4A 97.980 99 1 1 1917 2015 365637208 365637305 1.880000e-38 171.0
15 TraesCS2A01G196300 chr4A 97.778 90 2 0 119 208 374696226 374696137 5.260000e-34 156.0
16 TraesCS2A01G196300 chr6A 91.121 214 7 4 1 211 357404160 357404364 2.990000e-71 279.0
17 TraesCS2A01G196300 chr6A 88.732 213 10 4 1 208 357374589 357374792 8.440000e-62 248.0
18 TraesCS2A01G196300 chr2B 98.958 96 1 0 1920 2015 57652605 57652700 5.230000e-39 172.0
19 TraesCS2A01G196300 chr7B 97.980 99 0 1 1917 2015 317798117 317798021 1.880000e-38 171.0
20 TraesCS2A01G196300 chr7B 96.078 102 4 0 1914 2015 643352091 643352192 2.430000e-37 167.0
21 TraesCS2A01G196300 chr5B 97.000 100 2 1 1917 2015 476799467 476799368 2.430000e-37 167.0
22 TraesCS2A01G196300 chr1A 96.117 103 3 1 1914 2015 3675302 3675200 2.430000e-37 167.0
23 TraesCS2A01G196300 chr7D 85.526 152 20 1 1516 1665 52842979 52842828 1.460000e-34 158.0
24 TraesCS2A01G196300 chr3D 81.188 202 20 12 16 209 614096096 614096287 3.170000e-31 147.0
25 TraesCS2A01G196300 chr3D 80.597 201 21 11 16 208 614091001 614091191 5.300000e-29 139.0
26 TraesCS2A01G196300 chr4D 81.000 200 22 9 16 208 74360050 74359860 1.140000e-30 145.0
27 TraesCS2A01G196300 chr4D 81.868 182 19 10 32 208 139524362 139524190 1.470000e-29 141.0
28 TraesCS2A01G196300 chr5D 78.767 146 30 1 3776 3920 504625219 504625364 3.240000e-16 97.1
29 TraesCS2A01G196300 chr5D 78.767 146 30 1 3776 3920 504648178 504648323 3.240000e-16 97.1
30 TraesCS2A01G196300 chr5D 82.143 112 19 1 3810 3920 504671105 504671216 1.160000e-15 95.3
31 TraesCS2A01G196300 chr5D 78.082 146 31 1 3776 3920 504694027 504694172 1.510000e-14 91.6
32 TraesCS2A01G196300 chrUn 82.143 112 19 1 3810 3920 409018042 409017931 1.160000e-15 95.3


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS2A01G196300 chr2A 166239306 166243239 3933 False 3390.000000 6368 100.0000 1 3934 2 chr2A.!!$F3 3933
1 TraesCS2A01G196300 chr2D 156548761 156551134 2373 False 1968.000000 2809 96.6505 209 2706 2 chr2D.!!$F1 2497
2 TraesCS2A01G196300 chr2D 156555558 156556662 1104 False 468.566667 1040 97.2600 2701 3934 3 chr2D.!!$F2 1233
3 TraesCS2A01G196300 chr7A 55356136 55357128 992 False 741.000000 741 80.2550 660 1675 1 chr7A.!!$F1 1015
4 TraesCS2A01G196300 chr4A 667849085 667850076 991 False 691.000000 691 79.3920 660 1675 1 chr4A.!!$F2 1015

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
142 143 0.104120 ACTTACAGCTGTCACACGCA 59.896 50.0 25.56 0.0 0.00 5.24 F
165 166 0.109153 ACTCATGCTTGGCACAGACA 59.891 50.0 0.00 0.0 43.04 3.41 F
550 553 0.312416 AGCTTAGCGCGACCATCTAG 59.688 55.0 12.10 0.0 45.59 2.43 F
1131 1135 0.546122 TGAAACACCTGCACCTGTCT 59.454 50.0 0.00 0.0 0.00 3.41 F
2017 2021 0.108992 TAGTACGCAGCCTTTCCACG 60.109 55.0 0.00 0.0 0.00 4.94 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1611 1615 0.037512 CTCCGGCATCAGCTATCAGG 60.038 60.0 0.0 0.0 41.70 3.86 R
1998 2002 0.108992 CGTGGAAAGGCTGCGTACTA 60.109 55.0 0.0 0.0 0.00 1.82 R
2003 2007 0.240945 ATTTTCGTGGAAAGGCTGCG 59.759 50.0 0.0 0.0 32.93 5.18 R
2905 2913 0.687354 AGCATATCCACGCCTTAGGG 59.313 55.0 0.0 0.0 0.00 3.53 R
3379 3387 0.034896 GACCTTTGTCGAGGGAAGCA 59.965 55.0 0.0 0.0 41.31 3.91 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
18 19 3.998560 AGAGAGACAGAGAGGTGGG 57.001 57.895 0.00 0.00 0.00 4.61
19 20 1.377690 AGAGAGACAGAGAGGTGGGA 58.622 55.000 0.00 0.00 0.00 4.37
20 21 1.284785 AGAGAGACAGAGAGGTGGGAG 59.715 57.143 0.00 0.00 0.00 4.30
21 22 1.283613 GAGAGACAGAGAGGTGGGAGA 59.716 57.143 0.00 0.00 0.00 3.71
22 23 1.284785 AGAGACAGAGAGGTGGGAGAG 59.715 57.143 0.00 0.00 0.00 3.20
23 24 1.283613 GAGACAGAGAGGTGGGAGAGA 59.716 57.143 0.00 0.00 0.00 3.10
24 25 1.713647 AGACAGAGAGGTGGGAGAGAA 59.286 52.381 0.00 0.00 0.00 2.87
25 26 2.314549 AGACAGAGAGGTGGGAGAGAAT 59.685 50.000 0.00 0.00 0.00 2.40
26 27 3.529734 AGACAGAGAGGTGGGAGAGAATA 59.470 47.826 0.00 0.00 0.00 1.75
27 28 4.169856 AGACAGAGAGGTGGGAGAGAATAT 59.830 45.833 0.00 0.00 0.00 1.28
28 29 4.479158 ACAGAGAGGTGGGAGAGAATATC 58.521 47.826 0.00 0.00 0.00 1.63
29 30 4.078922 ACAGAGAGGTGGGAGAGAATATCA 60.079 45.833 0.00 0.00 0.00 2.15
30 31 4.523943 CAGAGAGGTGGGAGAGAATATCAG 59.476 50.000 0.00 0.00 0.00 2.90
31 32 4.169856 AGAGAGGTGGGAGAGAATATCAGT 59.830 45.833 0.00 0.00 0.00 3.41
32 33 4.889780 AGAGGTGGGAGAGAATATCAGTT 58.110 43.478 0.00 0.00 0.00 3.16
33 34 5.284582 AGAGGTGGGAGAGAATATCAGTTT 58.715 41.667 0.00 0.00 0.00 2.66
34 35 6.444704 AGAGGTGGGAGAGAATATCAGTTTA 58.555 40.000 0.00 0.00 0.00 2.01
35 36 6.325286 AGAGGTGGGAGAGAATATCAGTTTAC 59.675 42.308 0.00 0.00 0.00 2.01
36 37 6.206042 AGGTGGGAGAGAATATCAGTTTACT 58.794 40.000 0.00 0.00 0.00 2.24
37 38 6.098982 AGGTGGGAGAGAATATCAGTTTACTG 59.901 42.308 3.47 3.47 45.08 2.74
50 51 5.695851 CAGTTTACTGAAAATGACAGCCT 57.304 39.130 3.80 0.00 46.59 4.58
51 52 5.455392 CAGTTTACTGAAAATGACAGCCTG 58.545 41.667 3.80 0.00 46.59 4.85
52 53 5.009010 CAGTTTACTGAAAATGACAGCCTGT 59.991 40.000 0.00 0.00 46.59 4.00
53 54 5.594317 AGTTTACTGAAAATGACAGCCTGTT 59.406 36.000 0.00 0.00 38.74 3.16
54 55 6.096846 AGTTTACTGAAAATGACAGCCTGTTT 59.903 34.615 0.00 0.00 38.74 2.83
55 56 4.311816 ACTGAAAATGACAGCCTGTTTG 57.688 40.909 0.00 0.00 38.74 2.93
56 57 3.054878 CTGAAAATGACAGCCTGTTTGC 58.945 45.455 0.00 0.00 0.00 3.68
57 58 2.694628 TGAAAATGACAGCCTGTTTGCT 59.305 40.909 0.00 0.00 44.00 3.91
58 59 3.888323 TGAAAATGACAGCCTGTTTGCTA 59.112 39.130 0.00 0.00 40.32 3.49
59 60 3.923017 AAATGACAGCCTGTTTGCTAC 57.077 42.857 0.00 0.00 40.32 3.58
60 61 2.566833 ATGACAGCCTGTTTGCTACA 57.433 45.000 0.00 0.00 40.32 2.74
61 62 2.340210 TGACAGCCTGTTTGCTACAA 57.660 45.000 0.00 0.00 40.32 2.41
62 63 2.862541 TGACAGCCTGTTTGCTACAAT 58.137 42.857 0.00 0.00 40.32 2.71
63 64 4.014569 TGACAGCCTGTTTGCTACAATA 57.985 40.909 0.00 0.00 40.32 1.90
64 65 3.751175 TGACAGCCTGTTTGCTACAATAC 59.249 43.478 0.00 0.00 40.32 1.89
65 66 4.003648 GACAGCCTGTTTGCTACAATACT 58.996 43.478 0.00 0.00 40.32 2.12
66 67 4.003648 ACAGCCTGTTTGCTACAATACTC 58.996 43.478 0.00 0.00 40.32 2.59
67 68 4.256920 CAGCCTGTTTGCTACAATACTCT 58.743 43.478 0.00 0.00 40.32 3.24
68 69 4.331168 CAGCCTGTTTGCTACAATACTCTC 59.669 45.833 0.00 0.00 40.32 3.20
69 70 3.307242 GCCTGTTTGCTACAATACTCTCG 59.693 47.826 0.00 0.00 36.02 4.04
70 71 3.307242 CCTGTTTGCTACAATACTCTCGC 59.693 47.826 0.00 0.00 36.02 5.03
71 72 4.177026 CTGTTTGCTACAATACTCTCGCT 58.823 43.478 0.00 0.00 36.02 4.93
72 73 3.926527 TGTTTGCTACAATACTCTCGCTG 59.073 43.478 0.00 0.00 32.64 5.18
73 74 2.871182 TGCTACAATACTCTCGCTGG 57.129 50.000 0.00 0.00 0.00 4.85
74 75 1.409064 TGCTACAATACTCTCGCTGGG 59.591 52.381 0.00 0.00 0.00 4.45
75 76 1.409427 GCTACAATACTCTCGCTGGGT 59.591 52.381 0.00 0.00 0.00 4.51
76 77 2.159085 GCTACAATACTCTCGCTGGGTT 60.159 50.000 0.00 0.00 0.00 4.11
77 78 3.067742 GCTACAATACTCTCGCTGGGTTA 59.932 47.826 0.00 0.00 0.00 2.85
78 79 4.441079 GCTACAATACTCTCGCTGGGTTAA 60.441 45.833 0.00 0.00 0.00 2.01
79 80 4.124851 ACAATACTCTCGCTGGGTTAAG 57.875 45.455 0.00 0.00 0.00 1.85
80 81 3.514309 ACAATACTCTCGCTGGGTTAAGT 59.486 43.478 0.00 0.00 0.00 2.24
81 82 4.708421 ACAATACTCTCGCTGGGTTAAGTA 59.292 41.667 0.00 0.00 0.00 2.24
82 83 4.915158 ATACTCTCGCTGGGTTAAGTAC 57.085 45.455 0.00 0.00 0.00 2.73
83 84 1.823610 ACTCTCGCTGGGTTAAGTACC 59.176 52.381 0.00 0.00 46.99 3.34
91 92 3.538379 GGTTAAGTACCCCACGTGG 57.462 57.895 28.26 28.26 41.43 4.94
92 93 0.674581 GGTTAAGTACCCCACGTGGC 60.675 60.000 29.75 15.40 41.43 5.01
93 94 0.674581 GTTAAGTACCCCACGTGGCC 60.675 60.000 29.75 15.43 0.00 5.36
94 95 1.126329 TTAAGTACCCCACGTGGCCA 61.126 55.000 29.75 12.87 0.00 5.36
95 96 1.829523 TAAGTACCCCACGTGGCCAC 61.830 60.000 29.75 26.78 0.00 5.01
105 106 4.394712 GTGGCCACGTCCCCTCTG 62.395 72.222 22.49 0.00 0.00 3.35
109 110 3.775654 CCACGTCCCCTCTGGCTC 61.776 72.222 0.00 0.00 0.00 4.70
110 111 2.997315 CACGTCCCCTCTGGCTCA 60.997 66.667 0.00 0.00 0.00 4.26
111 112 2.997897 ACGTCCCCTCTGGCTCAC 60.998 66.667 0.00 0.00 0.00 3.51
112 113 2.681778 CGTCCCCTCTGGCTCACT 60.682 66.667 0.00 0.00 0.00 3.41
113 114 2.716017 CGTCCCCTCTGGCTCACTC 61.716 68.421 0.00 0.00 0.00 3.51
114 115 2.039624 TCCCCTCTGGCTCACTCC 59.960 66.667 0.00 0.00 0.00 3.85
115 116 3.465403 CCCCTCTGGCTCACTCCG 61.465 72.222 0.00 0.00 0.00 4.63
116 117 3.465403 CCCTCTGGCTCACTCCGG 61.465 72.222 0.00 0.00 0.00 5.14
117 118 4.154347 CCTCTGGCTCACTCCGGC 62.154 72.222 0.00 0.00 32.46 6.13
123 124 4.314440 GCTCACTCCGGCCACACA 62.314 66.667 2.24 0.00 0.00 3.72
124 125 2.357517 CTCACTCCGGCCACACAC 60.358 66.667 2.24 0.00 0.00 3.82
125 126 2.842462 TCACTCCGGCCACACACT 60.842 61.111 2.24 0.00 0.00 3.55
126 127 2.111043 CACTCCGGCCACACACTT 59.889 61.111 2.24 0.00 0.00 3.16
127 128 1.116536 TCACTCCGGCCACACACTTA 61.117 55.000 2.24 0.00 0.00 2.24
128 129 0.949105 CACTCCGGCCACACACTTAC 60.949 60.000 2.24 0.00 0.00 2.34
129 130 1.369692 CTCCGGCCACACACTTACA 59.630 57.895 2.24 0.00 0.00 2.41
130 131 0.670546 CTCCGGCCACACACTTACAG 60.671 60.000 2.24 0.00 0.00 2.74
131 132 2.325082 CCGGCCACACACTTACAGC 61.325 63.158 2.24 0.00 0.00 4.40
132 133 1.301716 CGGCCACACACTTACAGCT 60.302 57.895 2.24 0.00 0.00 4.24
133 134 1.568612 CGGCCACACACTTACAGCTG 61.569 60.000 13.48 13.48 0.00 4.24
134 135 0.535102 GGCCACACACTTACAGCTGT 60.535 55.000 25.12 25.12 0.00 4.40
135 136 0.868406 GCCACACACTTACAGCTGTC 59.132 55.000 25.56 0.12 0.00 3.51
136 137 1.810031 GCCACACACTTACAGCTGTCA 60.810 52.381 25.56 12.31 0.00 3.58
137 138 1.867233 CCACACACTTACAGCTGTCAC 59.133 52.381 25.56 0.00 0.00 3.67
138 139 2.549926 CACACACTTACAGCTGTCACA 58.450 47.619 25.56 2.37 0.00 3.58
139 140 2.285220 CACACACTTACAGCTGTCACAC 59.715 50.000 25.56 0.00 0.00 3.82
140 141 1.522676 CACACTTACAGCTGTCACACG 59.477 52.381 25.56 11.88 0.00 4.49
141 142 0.508641 CACTTACAGCTGTCACACGC 59.491 55.000 25.56 0.00 0.00 5.34
142 143 0.104120 ACTTACAGCTGTCACACGCA 59.896 50.000 25.56 0.00 0.00 5.24
143 144 0.508641 CTTACAGCTGTCACACGCAC 59.491 55.000 25.56 0.00 0.00 5.34
144 145 1.212455 TTACAGCTGTCACACGCACG 61.212 55.000 25.56 0.00 0.00 5.34
145 146 4.360027 CAGCTGTCACACGCACGC 62.360 66.667 5.25 0.00 0.00 5.34
146 147 4.889856 AGCTGTCACACGCACGCA 62.890 61.111 0.00 0.00 0.00 5.24
147 148 4.649954 GCTGTCACACGCACGCAC 62.650 66.667 0.00 0.00 0.00 5.34
148 149 2.961721 CTGTCACACGCACGCACT 60.962 61.111 0.00 0.00 0.00 4.40
149 150 2.932083 CTGTCACACGCACGCACTC 61.932 63.158 0.00 0.00 0.00 3.51
150 151 2.959599 GTCACACGCACGCACTCA 60.960 61.111 0.00 0.00 0.00 3.41
151 152 2.028925 TCACACGCACGCACTCAT 59.971 55.556 0.00 0.00 0.00 2.90
152 153 2.171701 CACACGCACGCACTCATG 59.828 61.111 0.00 0.00 0.00 3.07
163 164 2.936928 CACTCATGCTTGGCACAGA 58.063 52.632 0.00 2.91 43.04 3.41
164 165 0.520404 CACTCATGCTTGGCACAGAC 59.480 55.000 0.00 0.00 43.04 3.51
165 166 0.109153 ACTCATGCTTGGCACAGACA 59.891 50.000 0.00 0.00 43.04 3.41
166 167 1.241165 CTCATGCTTGGCACAGACAA 58.759 50.000 0.00 0.00 43.04 3.18
167 168 0.953727 TCATGCTTGGCACAGACAAC 59.046 50.000 0.00 0.00 43.04 3.32
168 169 0.956633 CATGCTTGGCACAGACAACT 59.043 50.000 0.00 0.00 43.04 3.16
169 170 0.956633 ATGCTTGGCACAGACAACTG 59.043 50.000 0.00 0.00 43.04 3.16
178 179 2.229039 CAGACAACTGGCAGTCACG 58.771 57.895 22.31 14.73 40.14 4.35
179 180 1.595382 AGACAACTGGCAGTCACGC 60.595 57.895 22.31 10.79 37.23 5.34
180 181 2.943345 GACAACTGGCAGTCACGCG 61.943 63.158 22.31 3.53 34.93 6.01
181 182 3.716006 CAACTGGCAGTCACGCGG 61.716 66.667 22.31 0.00 0.00 6.46
182 183 4.235762 AACTGGCAGTCACGCGGT 62.236 61.111 22.31 0.00 0.00 5.68
183 184 4.969196 ACTGGCAGTCACGCGGTG 62.969 66.667 15.88 6.71 34.45 4.94
322 323 2.097142 GGCTCTCTGCAGCAATTTACTG 59.903 50.000 9.47 1.54 45.15 2.74
378 379 6.526674 GCAAACGGATTTATTCACAAGGTTAG 59.473 38.462 0.00 0.00 0.00 2.34
462 463 0.392461 TAATCCTTGTGCAGGTCCGC 60.392 55.000 0.00 0.00 44.37 5.54
473 474 1.380112 AGGTCCGCTCTACTCCACC 60.380 63.158 0.00 0.00 0.00 4.61
474 475 2.424733 GGTCCGCTCTACTCCACCC 61.425 68.421 0.00 0.00 0.00 4.61
475 476 1.380112 GTCCGCTCTACTCCACCCT 60.380 63.158 0.00 0.00 0.00 4.34
477 478 2.128507 CCGCTCTACTCCACCCTCC 61.129 68.421 0.00 0.00 0.00 4.30
478 479 1.379977 CGCTCTACTCCACCCTCCA 60.380 63.158 0.00 0.00 0.00 3.86
479 480 1.668101 CGCTCTACTCCACCCTCCAC 61.668 65.000 0.00 0.00 0.00 4.02
480 481 1.668101 GCTCTACTCCACCCTCCACG 61.668 65.000 0.00 0.00 0.00 4.94
550 553 0.312416 AGCTTAGCGCGACCATCTAG 59.688 55.000 12.10 0.00 45.59 2.43
614 617 3.110178 CCAAAGTCGACGCCGTCC 61.110 66.667 12.26 0.00 37.05 4.79
627 630 1.995646 GCCGTCCTCGAAGGAGAGAC 61.996 65.000 4.13 0.00 46.90 3.36
631 634 2.563702 GTCCTCGAAGGAGAGACGTAT 58.436 52.381 4.13 0.00 46.90 3.06
713 716 0.798776 CAAGGTCATGTCGTTCCTGC 59.201 55.000 0.00 0.00 0.00 4.85
752 755 4.731612 CCTGTGTGCTCTCGCGCT 62.732 66.667 5.56 0.00 46.58 5.92
814 817 2.193536 GGTCTGTTGCAAAGCCCGT 61.194 57.895 0.00 0.00 0.00 5.28
818 821 2.051345 GTTGCAAAGCCCGTCACG 60.051 61.111 0.00 0.00 0.00 4.35
941 944 4.027050 CGTCGTCTGTTGATGATGATTCAG 60.027 45.833 2.31 0.00 44.12 3.02
945 948 4.634883 GTCTGTTGATGATGATTCAGTGCT 59.365 41.667 0.00 0.00 34.73 4.40
1131 1135 0.546122 TGAAACACCTGCACCTGTCT 59.454 50.000 0.00 0.00 0.00 3.41
1160 1164 3.990092 TGTTGCGAGACAAGACACTAAT 58.010 40.909 0.00 0.00 39.50 1.73
1200 1204 3.053077 TCCTTCTTTGGAAGTCCTGGAA 58.947 45.455 0.00 0.60 45.36 3.53
1305 1309 2.580815 CTGTCCATCGCTGCTCCA 59.419 61.111 0.00 0.00 0.00 3.86
1321 1325 2.616510 GCTCCAAGCCTTGTATCACTGT 60.617 50.000 3.37 0.00 34.48 3.55
1356 1360 2.660552 CACCGTGCTCCGTCGTTT 60.661 61.111 0.00 0.00 33.66 3.60
1363 1367 0.658897 TGCTCCGTCGTTTGAAAACC 59.341 50.000 0.49 0.00 35.51 3.27
1488 1492 2.955402 GGCGACGACAGTGACTCT 59.045 61.111 0.00 0.00 0.00 3.24
1530 1534 5.437946 AGTGATACTGATACCGACTTGAGA 58.562 41.667 0.00 0.00 0.00 3.27
1611 1615 6.582672 GCCTTTCAAATGCTACAAGTTTAGAC 59.417 38.462 0.00 0.00 0.00 2.59
1677 1681 7.147672 TGCTGACATATCTCCTTCAGTAATCAA 60.148 37.037 0.00 0.00 38.21 2.57
1729 1733 0.830648 TATGGAACGGAGGGAGCAAG 59.169 55.000 0.00 0.00 0.00 4.01
1742 1746 5.067023 GGAGGGAGCAAGTGATATTTTTCAG 59.933 44.000 0.00 0.00 0.00 3.02
1864 1868 5.580691 CACTCAGTGACTCAAGTAACAACAA 59.419 40.000 0.00 0.00 35.23 2.83
1876 1880 4.335416 AGTAACAACAACTGGCTGCATAT 58.665 39.130 0.50 0.00 0.00 1.78
1878 1882 5.943416 AGTAACAACAACTGGCTGCATATTA 59.057 36.000 0.50 0.00 0.00 0.98
1924 1928 8.873144 AGTTATGGGTAACAGTTCTAGTGTTAA 58.127 33.333 8.28 0.00 43.32 2.01
1925 1929 9.492973 GTTATGGGTAACAGTTCTAGTGTTAAA 57.507 33.333 8.28 0.00 43.32 1.52
1927 1931 8.983702 ATGGGTAACAGTTCTAGTGTTAAAAA 57.016 30.769 8.28 0.00 43.32 1.94
1948 1952 4.413928 GGCAACCTGGTGCATGTA 57.586 55.556 18.44 0.00 46.81 2.29
1949 1953 2.183409 GGCAACCTGGTGCATGTAG 58.817 57.895 18.44 0.00 46.81 2.74
1950 1954 1.508088 GCAACCTGGTGCATGTAGC 59.492 57.895 6.00 6.00 44.29 3.58
1951 1955 0.962356 GCAACCTGGTGCATGTAGCT 60.962 55.000 14.15 0.00 44.29 3.32
1952 1956 1.089920 CAACCTGGTGCATGTAGCTC 58.910 55.000 14.15 0.00 45.94 4.09
1958 1962 1.450312 GTGCATGTAGCTCCCGCTT 60.450 57.895 0.00 0.00 46.47 4.68
1959 1963 1.450134 TGCATGTAGCTCCCGCTTG 60.450 57.895 0.00 0.00 46.47 4.01
1960 1964 2.828128 GCATGTAGCTCCCGCTTGC 61.828 63.158 0.00 0.00 46.47 4.01
1961 1965 2.202932 ATGTAGCTCCCGCTTGCG 60.203 61.111 8.14 8.14 46.47 4.85
1964 1968 4.819761 TAGCTCCCGCTTGCGCAG 62.820 66.667 11.31 6.32 46.47 5.18
1970 1974 4.451150 CCGCTTGCGCAGGGTCTA 62.451 66.667 21.88 0.00 35.30 2.59
1971 1975 2.887568 CGCTTGCGCAGGGTCTAG 60.888 66.667 21.88 10.95 35.30 2.43
1972 1976 2.512515 GCTTGCGCAGGGTCTAGG 60.513 66.667 21.88 0.00 35.78 3.02
1973 1977 2.187946 CTTGCGCAGGGTCTAGGG 59.812 66.667 12.39 0.00 0.00 3.53
1974 1978 2.284331 TTGCGCAGGGTCTAGGGA 60.284 61.111 11.31 0.00 0.00 4.20
1975 1979 1.899437 CTTGCGCAGGGTCTAGGGAA 61.899 60.000 12.39 0.00 0.00 3.97
1976 1980 1.899437 TTGCGCAGGGTCTAGGGAAG 61.899 60.000 11.31 0.00 0.00 3.46
1977 1981 3.095347 GCGCAGGGTCTAGGGAAGG 62.095 68.421 0.30 0.00 0.00 3.46
1978 1982 2.435693 CGCAGGGTCTAGGGAAGGG 61.436 68.421 0.00 0.00 0.00 3.95
1979 1983 1.307084 GCAGGGTCTAGGGAAGGGT 60.307 63.158 0.00 0.00 0.00 4.34
1980 1984 1.338890 GCAGGGTCTAGGGAAGGGTC 61.339 65.000 0.00 0.00 0.00 4.46
1981 1985 0.691413 CAGGGTCTAGGGAAGGGTCC 60.691 65.000 0.00 0.00 44.10 4.46
1982 1986 1.761271 GGGTCTAGGGAAGGGTCCG 60.761 68.421 0.00 0.00 46.04 4.79
1983 1987 1.309006 GGTCTAGGGAAGGGTCCGA 59.691 63.158 0.00 0.00 46.04 4.55
1984 1988 1.042003 GGTCTAGGGAAGGGTCCGAC 61.042 65.000 0.00 0.00 46.04 4.79
1985 1989 1.042003 GTCTAGGGAAGGGTCCGACC 61.042 65.000 9.30 9.30 46.04 4.79
1986 1990 1.001248 CTAGGGAAGGGTCCGACCA 59.999 63.158 19.43 0.00 46.04 4.02
1987 1991 1.305549 TAGGGAAGGGTCCGACCAC 60.306 63.158 19.43 8.70 46.04 4.16
1988 1992 1.807771 TAGGGAAGGGTCCGACCACT 61.808 60.000 19.43 10.80 46.04 4.00
1989 1993 2.222013 GGGAAGGGTCCGACCACTT 61.222 63.158 19.43 17.88 46.04 3.16
1990 1994 1.759236 GGAAGGGTCCGACCACTTT 59.241 57.895 19.43 9.96 41.02 2.66
1991 1995 0.605589 GGAAGGGTCCGACCACTTTG 60.606 60.000 19.43 0.00 41.02 2.77
1992 1996 0.605589 GAAGGGTCCGACCACTTTGG 60.606 60.000 19.43 0.00 41.02 3.28
1993 1997 2.033602 GGGTCCGACCACTTTGGG 59.966 66.667 19.43 0.00 43.37 4.12
1994 1998 2.826003 GGGTCCGACCACTTTGGGT 61.826 63.158 19.43 0.00 43.37 4.51
2004 2008 4.996788 ACCACTTTGGGTCTATAGTACG 57.003 45.455 0.00 0.00 43.37 3.67
2005 2009 3.131755 ACCACTTTGGGTCTATAGTACGC 59.868 47.826 0.00 6.13 43.37 4.42
2006 2010 3.131577 CCACTTTGGGTCTATAGTACGCA 59.868 47.826 13.98 13.98 37.94 5.24
2007 2011 4.360563 CACTTTGGGTCTATAGTACGCAG 58.639 47.826 16.00 11.29 40.36 5.18
2008 2012 3.181478 ACTTTGGGTCTATAGTACGCAGC 60.181 47.826 16.00 2.07 40.36 5.25
2009 2013 1.325355 TGGGTCTATAGTACGCAGCC 58.675 55.000 13.98 8.23 35.18 4.85
2010 2014 1.133575 TGGGTCTATAGTACGCAGCCT 60.134 52.381 13.98 0.00 35.18 4.58
2011 2015 1.962100 GGGTCTATAGTACGCAGCCTT 59.038 52.381 0.00 0.00 0.00 4.35
2012 2016 2.364647 GGGTCTATAGTACGCAGCCTTT 59.635 50.000 0.00 0.00 0.00 3.11
2013 2017 3.552478 GGGTCTATAGTACGCAGCCTTTC 60.552 52.174 0.00 0.00 0.00 2.62
2014 2018 3.552478 GGTCTATAGTACGCAGCCTTTCC 60.552 52.174 0.00 0.00 0.00 3.13
2015 2019 3.067742 GTCTATAGTACGCAGCCTTTCCA 59.932 47.826 0.00 0.00 0.00 3.53
2016 2020 2.311124 ATAGTACGCAGCCTTTCCAC 57.689 50.000 0.00 0.00 0.00 4.02
2017 2021 0.108992 TAGTACGCAGCCTTTCCACG 60.109 55.000 0.00 0.00 0.00 4.94
2018 2022 1.373748 GTACGCAGCCTTTCCACGA 60.374 57.895 0.00 0.00 0.00 4.35
2019 2023 0.947180 GTACGCAGCCTTTCCACGAA 60.947 55.000 0.00 0.00 0.00 3.85
2020 2024 0.249953 TACGCAGCCTTTCCACGAAA 60.250 50.000 0.00 0.00 0.00 3.46
2021 2025 1.098712 ACGCAGCCTTTCCACGAAAA 61.099 50.000 0.00 0.00 30.84 2.29
2022 2026 0.240945 CGCAGCCTTTCCACGAAAAT 59.759 50.000 0.00 0.00 30.84 1.82
2023 2027 1.335872 CGCAGCCTTTCCACGAAAATT 60.336 47.619 0.00 0.00 30.84 1.82
2024 2028 2.061028 GCAGCCTTTCCACGAAAATTG 58.939 47.619 0.00 0.00 30.84 2.32
2025 2029 2.545742 GCAGCCTTTCCACGAAAATTGT 60.546 45.455 0.00 0.00 30.84 2.71
2026 2030 3.305064 GCAGCCTTTCCACGAAAATTGTA 60.305 43.478 0.00 0.00 30.84 2.41
2027 2031 4.794655 GCAGCCTTTCCACGAAAATTGTAA 60.795 41.667 0.00 0.00 30.84 2.41
2028 2032 5.469479 CAGCCTTTCCACGAAAATTGTAAT 58.531 37.500 0.00 0.00 30.84 1.89
2029 2033 6.616947 CAGCCTTTCCACGAAAATTGTAATA 58.383 36.000 0.00 0.00 30.84 0.98
2030 2034 7.087639 CAGCCTTTCCACGAAAATTGTAATAA 58.912 34.615 0.00 0.00 30.84 1.40
2031 2035 7.596995 CAGCCTTTCCACGAAAATTGTAATAAA 59.403 33.333 0.00 0.00 30.84 1.40
2032 2036 8.145122 AGCCTTTCCACGAAAATTGTAATAAAA 58.855 29.630 0.00 0.00 30.84 1.52
2033 2037 8.931775 GCCTTTCCACGAAAATTGTAATAAAAT 58.068 29.630 0.00 0.00 30.84 1.82
2073 2077 9.175312 TGTAATAAAATTGTATAAGCAACGGGA 57.825 29.630 0.00 0.00 0.00 5.14
2084 2088 2.524306 AGCAACGGGAATTGGAAATGA 58.476 42.857 0.00 0.00 0.00 2.57
2090 2094 3.687698 ACGGGAATTGGAAATGAGTAACG 59.312 43.478 0.00 0.00 0.00 3.18
2196 2200 8.589335 TCACTGTGTTACTATTCTTTTCTGTC 57.411 34.615 7.79 0.00 0.00 3.51
2235 2239 5.581874 ACTTTTTGTGCCAAAGTTGATTCTG 59.418 36.000 0.00 0.00 40.83 3.02
2563 2567 6.603201 TCAAGATAAAATGTCCCAAGGATGAC 59.397 38.462 0.00 0.00 32.73 3.06
2639 2643 4.640789 AAGATAGATGTCTGTCACCGTC 57.359 45.455 9.07 0.00 36.68 4.79
2762 2770 4.118410 CACAAAGGCTGTTGTATTTGCAA 58.882 39.130 12.51 0.00 39.73 4.08
2874 2882 6.762108 AGACATTGTAAACTTATTCGCTTCG 58.238 36.000 0.00 0.00 0.00 3.79
2881 2889 8.242085 TGTAAACTTATTCGCTTCGTCAAATA 57.758 30.769 0.00 0.00 0.00 1.40
2905 2913 1.341383 ACCAGGTCATCAATCCTTGGC 60.341 52.381 0.00 0.00 30.91 4.52
2950 2958 3.122937 GTAGGAACTGCAATTTCAGCG 57.877 47.619 4.91 0.00 41.93 5.18
2957 2965 3.056952 CTGCAATTTCAGCGGTATCAC 57.943 47.619 0.00 0.00 33.72 3.06
2975 2983 5.888982 ATCACCGGTATGATTTTACCTCT 57.111 39.130 6.87 0.00 39.65 3.69
2980 2988 7.070198 TCACCGGTATGATTTTACCTCTGATTA 59.930 37.037 6.87 0.00 39.65 1.75
2981 2989 7.170998 CACCGGTATGATTTTACCTCTGATTAC 59.829 40.741 6.87 0.00 39.65 1.89
3022 3030 7.506261 ACTGTAAGGTATACAAGTCCTATCTGG 59.494 40.741 5.01 0.00 39.30 3.86
3193 3201 3.963665 TCTTTTTCCGTGCATGTTTCTG 58.036 40.909 4.96 0.00 0.00 3.02
3242 3250 4.144297 TCCTGCAAGAATAGCAAAACTGT 58.856 39.130 0.00 0.00 42.17 3.55
3244 3252 4.682860 CCTGCAAGAATAGCAAAACTGTTG 59.317 41.667 0.00 0.00 42.17 3.33
3345 3353 9.578439 AAATTTGACTAGCAAGATAAAGAATGC 57.422 29.630 0.00 0.00 37.87 3.56
3346 3354 6.683974 TTGACTAGCAAGATAAAGAATGCC 57.316 37.500 0.00 0.00 39.59 4.40
3347 3355 5.744171 TGACTAGCAAGATAAAGAATGCCA 58.256 37.500 0.00 0.00 39.59 4.92
3348 3356 5.819379 TGACTAGCAAGATAAAGAATGCCAG 59.181 40.000 0.00 0.00 39.59 4.85
3349 3357 5.128919 ACTAGCAAGATAAAGAATGCCAGG 58.871 41.667 0.00 0.00 39.59 4.45
3350 3358 3.973425 AGCAAGATAAAGAATGCCAGGT 58.027 40.909 0.00 0.00 39.59 4.00
3351 3359 5.116084 AGCAAGATAAAGAATGCCAGGTA 57.884 39.130 0.00 0.00 39.59 3.08
3352 3360 5.509498 AGCAAGATAAAGAATGCCAGGTAA 58.491 37.500 0.00 0.00 39.59 2.85
3353 3361 6.131961 AGCAAGATAAAGAATGCCAGGTAAT 58.868 36.000 0.00 0.00 39.59 1.89
3354 3362 6.608808 AGCAAGATAAAGAATGCCAGGTAATT 59.391 34.615 0.00 0.00 39.59 1.40
3355 3363 7.124750 AGCAAGATAAAGAATGCCAGGTAATTT 59.875 33.333 0.00 0.00 39.59 1.82
3356 3364 8.413229 GCAAGATAAAGAATGCCAGGTAATTTA 58.587 33.333 0.00 0.00 32.73 1.40
3357 3365 9.736023 CAAGATAAAGAATGCCAGGTAATTTAC 57.264 33.333 0.00 0.00 0.00 2.01
3358 3366 9.700831 AAGATAAAGAATGCCAGGTAATTTACT 57.299 29.630 6.52 0.00 0.00 2.24
3359 3367 9.700831 AGATAAAGAATGCCAGGTAATTTACTT 57.299 29.630 6.52 0.00 0.00 2.24
3380 3388 9.787435 TTACTTATAAAGTATACCCAAGCCATG 57.213 33.333 0.00 0.00 43.09 3.66
3381 3389 6.715264 ACTTATAAAGTATACCCAAGCCATGC 59.285 38.462 0.00 0.00 40.69 4.06
3382 3390 3.669939 AAAGTATACCCAAGCCATGCT 57.330 42.857 0.00 0.00 42.56 3.79
3384 3392 3.214696 AGTATACCCAAGCCATGCTTC 57.785 47.619 0.00 0.00 46.77 3.86
3385 3393 2.158608 AGTATACCCAAGCCATGCTTCC 60.159 50.000 0.00 0.00 46.77 3.46
3386 3394 0.106015 ATACCCAAGCCATGCTTCCC 60.106 55.000 0.00 0.00 46.77 3.97
3387 3395 1.214305 TACCCAAGCCATGCTTCCCT 61.214 55.000 0.00 0.00 46.77 4.20
3388 3396 1.755783 CCCAAGCCATGCTTCCCTC 60.756 63.158 0.00 0.00 46.77 4.30
3389 3397 2.117156 CCAAGCCATGCTTCCCTCG 61.117 63.158 0.00 0.00 46.77 4.63
3390 3398 1.078214 CAAGCCATGCTTCCCTCGA 60.078 57.895 0.00 0.00 46.77 4.04
3391 3399 1.078143 AAGCCATGCTTCCCTCGAC 60.078 57.895 0.00 0.00 46.77 4.20
3392 3400 1.841302 AAGCCATGCTTCCCTCGACA 61.841 55.000 0.00 0.00 46.77 4.35
3393 3401 1.377202 GCCATGCTTCCCTCGACAA 60.377 57.895 0.00 0.00 0.00 3.18
3394 3402 0.960364 GCCATGCTTCCCTCGACAAA 60.960 55.000 0.00 0.00 0.00 2.83
3395 3403 1.089920 CCATGCTTCCCTCGACAAAG 58.910 55.000 0.00 0.00 0.00 2.77
3396 3404 1.089920 CATGCTTCCCTCGACAAAGG 58.910 55.000 0.00 0.00 36.08 3.11
3397 3405 0.693049 ATGCTTCCCTCGACAAAGGT 59.307 50.000 0.00 0.00 34.34 3.50
3398 3406 0.034896 TGCTTCCCTCGACAAAGGTC 59.965 55.000 0.00 0.00 40.77 3.85
3407 3415 2.690326 GACAAAGGTCGCAGTGTGT 58.310 52.632 3.13 0.00 33.68 3.72
3408 3416 1.014352 GACAAAGGTCGCAGTGTGTT 58.986 50.000 3.13 0.00 33.68 3.32
3409 3417 1.003866 GACAAAGGTCGCAGTGTGTTC 60.004 52.381 3.13 0.00 33.68 3.18
3410 3418 1.299541 CAAAGGTCGCAGTGTGTTCT 58.700 50.000 3.13 0.00 0.00 3.01
3411 3419 2.159014 ACAAAGGTCGCAGTGTGTTCTA 60.159 45.455 3.13 0.00 0.00 2.10
3412 3420 2.150397 AAGGTCGCAGTGTGTTCTAC 57.850 50.000 3.13 0.00 0.00 2.59
3413 3421 1.329256 AGGTCGCAGTGTGTTCTACT 58.671 50.000 3.13 0.00 0.00 2.57
3414 3422 1.000163 AGGTCGCAGTGTGTTCTACTG 60.000 52.381 3.13 0.00 46.37 2.74
3415 3423 1.419374 GTCGCAGTGTGTTCTACTGG 58.581 55.000 3.13 0.00 44.36 4.00
3416 3424 1.000607 GTCGCAGTGTGTTCTACTGGA 60.001 52.381 3.13 1.05 44.36 3.86
3417 3425 1.684450 TCGCAGTGTGTTCTACTGGAA 59.316 47.619 3.13 0.00 44.36 3.53
3418 3426 2.299013 TCGCAGTGTGTTCTACTGGAAT 59.701 45.455 3.13 0.00 44.36 3.01
3419 3427 3.508402 TCGCAGTGTGTTCTACTGGAATA 59.492 43.478 3.13 0.00 44.36 1.75
3420 3428 3.612860 CGCAGTGTGTTCTACTGGAATAC 59.387 47.826 7.19 0.00 44.36 1.89
3421 3429 4.618460 CGCAGTGTGTTCTACTGGAATACT 60.618 45.833 7.19 0.00 44.36 2.12
3422 3430 4.627467 GCAGTGTGTTCTACTGGAATACTG 59.373 45.833 7.19 0.00 44.36 2.74
3423 3431 4.627467 CAGTGTGTTCTACTGGAATACTGC 59.373 45.833 4.13 0.00 43.47 4.40
3424 3432 4.528596 AGTGTGTTCTACTGGAATACTGCT 59.471 41.667 4.13 0.78 43.47 4.24
3425 3433 4.627467 GTGTGTTCTACTGGAATACTGCTG 59.373 45.833 4.13 0.00 43.47 4.41
3426 3434 4.526650 TGTGTTCTACTGGAATACTGCTGA 59.473 41.667 0.00 0.00 43.47 4.26
3427 3435 4.865365 GTGTTCTACTGGAATACTGCTGAC 59.135 45.833 0.00 0.00 41.06 3.51
3428 3436 4.526650 TGTTCTACTGGAATACTGCTGACA 59.473 41.667 0.00 0.00 36.24 3.58
3429 3437 5.011635 TGTTCTACTGGAATACTGCTGACAA 59.988 40.000 0.00 0.00 36.24 3.18
3430 3438 5.073311 TCTACTGGAATACTGCTGACAAC 57.927 43.478 0.00 0.00 0.00 3.32
3431 3439 3.769739 ACTGGAATACTGCTGACAACA 57.230 42.857 0.00 0.00 0.00 3.33
3432 3440 4.085357 ACTGGAATACTGCTGACAACAA 57.915 40.909 0.00 0.00 0.00 2.83
3433 3441 4.067896 ACTGGAATACTGCTGACAACAAG 58.932 43.478 0.00 0.00 0.00 3.16
3434 3442 4.202357 ACTGGAATACTGCTGACAACAAGA 60.202 41.667 0.00 0.00 0.00 3.02
3435 3443 4.713553 TGGAATACTGCTGACAACAAGAA 58.286 39.130 0.00 0.00 0.00 2.52
3436 3444 5.129634 TGGAATACTGCTGACAACAAGAAA 58.870 37.500 0.00 0.00 0.00 2.52
3437 3445 5.592282 TGGAATACTGCTGACAACAAGAAAA 59.408 36.000 0.00 0.00 0.00 2.29
3438 3446 6.096141 TGGAATACTGCTGACAACAAGAAAAA 59.904 34.615 0.00 0.00 0.00 1.94
3439 3447 6.638468 GGAATACTGCTGACAACAAGAAAAAG 59.362 38.462 0.00 0.00 0.00 2.27
3440 3448 6.699575 ATACTGCTGACAACAAGAAAAAGT 57.300 33.333 0.00 0.00 0.00 2.66
3441 3449 7.801716 ATACTGCTGACAACAAGAAAAAGTA 57.198 32.000 0.00 0.00 0.00 2.24
3442 3450 6.699575 ACTGCTGACAACAAGAAAAAGTAT 57.300 33.333 0.00 0.00 0.00 2.12
3443 3451 7.801716 ACTGCTGACAACAAGAAAAAGTATA 57.198 32.000 0.00 0.00 0.00 1.47
3444 3452 7.865707 ACTGCTGACAACAAGAAAAAGTATAG 58.134 34.615 0.00 0.00 0.00 1.31
3445 3453 7.041098 ACTGCTGACAACAAGAAAAAGTATAGG 60.041 37.037 0.00 0.00 0.00 2.57
3446 3454 6.995686 TGCTGACAACAAGAAAAAGTATAGGA 59.004 34.615 0.00 0.00 0.00 2.94
3447 3455 7.665559 TGCTGACAACAAGAAAAAGTATAGGAT 59.334 33.333 0.00 0.00 0.00 3.24
3780 3815 3.327757 ACACCTTTTATGTCCTCTGCTCA 59.672 43.478 0.00 0.00 0.00 4.26
3806 3841 1.329906 GCTCGCAATTCTGGATGTCTG 59.670 52.381 0.00 0.00 0.00 3.51
3820 3855 1.227556 GTCTGTCCACAAGGTGCGT 60.228 57.895 0.00 0.00 35.89 5.24
3834 3869 3.005554 AGGTGCGTGATGAATTCAGAAG 58.994 45.455 14.54 6.56 34.17 2.85
3851 3886 4.861102 AGAAGCCTTCTGAAATTTGTGG 57.139 40.909 6.08 0.00 38.91 4.17
3906 3941 2.750237 GTGATTGGTGACGGCCCC 60.750 66.667 0.00 0.00 0.00 5.80
3920 3955 1.306568 GCCCCCTCTCTCAGTCCTT 60.307 63.158 0.00 0.00 0.00 3.36
3928 3963 3.564571 CCTCTCTCAGTCCTTCCCTGTTA 60.565 52.174 0.00 0.00 0.00 2.41
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 1.284785 CTCCCACCTCTCTGTCTCTCT 59.715 57.143 0.00 0.00 0.00 3.10
1 2 1.283613 TCTCCCACCTCTCTGTCTCTC 59.716 57.143 0.00 0.00 0.00 3.20
2 3 1.284785 CTCTCCCACCTCTCTGTCTCT 59.715 57.143 0.00 0.00 0.00 3.10
3 4 1.283613 TCTCTCCCACCTCTCTGTCTC 59.716 57.143 0.00 0.00 0.00 3.36
4 5 1.377690 TCTCTCCCACCTCTCTGTCT 58.622 55.000 0.00 0.00 0.00 3.41
5 6 2.223803 TTCTCTCCCACCTCTCTGTC 57.776 55.000 0.00 0.00 0.00 3.51
6 7 2.938428 ATTCTCTCCCACCTCTCTGT 57.062 50.000 0.00 0.00 0.00 3.41
7 8 4.478203 TGATATTCTCTCCCACCTCTCTG 58.522 47.826 0.00 0.00 0.00 3.35
8 9 4.169856 ACTGATATTCTCTCCCACCTCTCT 59.830 45.833 0.00 0.00 0.00 3.10
9 10 4.479158 ACTGATATTCTCTCCCACCTCTC 58.521 47.826 0.00 0.00 0.00 3.20
10 11 4.551215 ACTGATATTCTCTCCCACCTCT 57.449 45.455 0.00 0.00 0.00 3.69
11 12 5.622346 AAACTGATATTCTCTCCCACCTC 57.378 43.478 0.00 0.00 0.00 3.85
12 13 6.098982 CAGTAAACTGATATTCTCTCCCACCT 59.901 42.308 3.99 0.00 46.59 4.00
13 14 6.284459 CAGTAAACTGATATTCTCTCCCACC 58.716 44.000 3.99 0.00 46.59 4.61
28 29 5.009010 ACAGGCTGTCATTTTCAGTAAACTG 59.991 40.000 15.88 3.64 45.08 3.16
29 30 5.133221 ACAGGCTGTCATTTTCAGTAAACT 58.867 37.500 15.88 0.00 35.60 2.66
30 31 5.438761 ACAGGCTGTCATTTTCAGTAAAC 57.561 39.130 15.88 0.00 35.60 2.01
31 32 6.272318 CAAACAGGCTGTCATTTTCAGTAAA 58.728 36.000 22.31 0.00 35.60 2.01
32 33 5.735922 GCAAACAGGCTGTCATTTTCAGTAA 60.736 40.000 22.31 0.00 35.60 2.24
33 34 4.261572 GCAAACAGGCTGTCATTTTCAGTA 60.262 41.667 22.31 0.00 35.60 2.74
34 35 3.491447 GCAAACAGGCTGTCATTTTCAGT 60.491 43.478 22.31 0.00 35.60 3.41
35 36 3.054878 GCAAACAGGCTGTCATTTTCAG 58.945 45.455 22.31 5.99 36.18 3.02
36 37 2.694628 AGCAAACAGGCTGTCATTTTCA 59.305 40.909 22.31 0.00 43.89 2.69
37 38 3.375782 AGCAAACAGGCTGTCATTTTC 57.624 42.857 22.31 6.35 43.89 2.29
38 39 3.636300 TGTAGCAAACAGGCTGTCATTTT 59.364 39.130 22.31 8.65 45.44 1.82
39 40 3.221771 TGTAGCAAACAGGCTGTCATTT 58.778 40.909 22.31 9.05 45.44 2.32
40 41 2.862541 TGTAGCAAACAGGCTGTCATT 58.137 42.857 22.31 9.86 45.44 2.57
41 42 2.566833 TGTAGCAAACAGGCTGTCAT 57.433 45.000 22.31 10.44 45.44 3.06
42 43 2.340210 TTGTAGCAAACAGGCTGTCA 57.660 45.000 22.31 10.55 45.44 3.58
43 44 4.003648 AGTATTGTAGCAAACAGGCTGTC 58.996 43.478 22.31 8.77 45.44 3.51
44 45 4.003648 GAGTATTGTAGCAAACAGGCTGT 58.996 43.478 15.88 15.88 45.44 4.40
45 46 4.256920 AGAGTATTGTAGCAAACAGGCTG 58.743 43.478 14.16 14.16 45.44 4.85
47 48 3.307242 CGAGAGTATTGTAGCAAACAGGC 59.693 47.826 0.00 0.00 39.87 4.85
48 49 3.307242 GCGAGAGTATTGTAGCAAACAGG 59.693 47.826 0.00 0.00 39.87 4.00
49 50 4.032217 CAGCGAGAGTATTGTAGCAAACAG 59.968 45.833 0.00 0.00 39.87 3.16
50 51 3.926527 CAGCGAGAGTATTGTAGCAAACA 59.073 43.478 0.00 0.00 35.88 2.83
51 52 3.307242 CCAGCGAGAGTATTGTAGCAAAC 59.693 47.826 0.00 0.00 0.00 2.93
52 53 3.521560 CCAGCGAGAGTATTGTAGCAAA 58.478 45.455 0.00 0.00 0.00 3.68
53 54 2.159099 CCCAGCGAGAGTATTGTAGCAA 60.159 50.000 0.00 0.00 0.00 3.91
54 55 1.409064 CCCAGCGAGAGTATTGTAGCA 59.591 52.381 0.00 0.00 0.00 3.49
55 56 1.409427 ACCCAGCGAGAGTATTGTAGC 59.591 52.381 0.00 0.00 0.00 3.58
56 57 3.802948 AACCCAGCGAGAGTATTGTAG 57.197 47.619 0.00 0.00 0.00 2.74
57 58 4.708421 ACTTAACCCAGCGAGAGTATTGTA 59.292 41.667 0.00 0.00 0.00 2.41
58 59 3.514309 ACTTAACCCAGCGAGAGTATTGT 59.486 43.478 0.00 0.00 0.00 2.71
59 60 4.124851 ACTTAACCCAGCGAGAGTATTG 57.875 45.455 0.00 0.00 0.00 1.90
60 61 4.099113 GGTACTTAACCCAGCGAGAGTATT 59.901 45.833 0.00 0.00 43.16 1.89
61 62 3.635836 GGTACTTAACCCAGCGAGAGTAT 59.364 47.826 0.00 0.00 43.16 2.12
62 63 3.019564 GGTACTTAACCCAGCGAGAGTA 58.980 50.000 0.00 0.00 43.16 2.59
63 64 1.823610 GGTACTTAACCCAGCGAGAGT 59.176 52.381 0.00 0.00 43.16 3.24
64 65 2.580966 GGTACTTAACCCAGCGAGAG 57.419 55.000 0.00 0.00 43.16 3.20
74 75 0.674581 GGCCACGTGGGGTACTTAAC 60.675 60.000 34.58 14.99 37.04 2.01
75 76 1.126329 TGGCCACGTGGGGTACTTAA 61.126 55.000 34.58 6.57 37.04 1.85
76 77 1.535930 TGGCCACGTGGGGTACTTA 60.536 57.895 34.58 9.55 37.04 2.24
77 78 2.850130 TGGCCACGTGGGGTACTT 60.850 61.111 34.58 0.00 37.04 2.24
78 79 3.633116 GTGGCCACGTGGGGTACT 61.633 66.667 34.58 0.00 37.04 2.73
88 89 4.394712 CAGAGGGGACGTGGCCAC 62.395 72.222 26.78 26.78 0.00 5.01
92 93 3.775654 GAGCCAGAGGGGACGTGG 61.776 72.222 0.00 0.00 41.04 4.94
93 94 2.997315 TGAGCCAGAGGGGACGTG 60.997 66.667 0.00 0.00 40.01 4.49
94 95 2.997897 GTGAGCCAGAGGGGACGT 60.998 66.667 0.00 0.00 40.01 4.34
95 96 2.681778 AGTGAGCCAGAGGGGACG 60.682 66.667 0.00 0.00 40.01 4.79
96 97 2.363172 GGAGTGAGCCAGAGGGGAC 61.363 68.421 0.00 0.00 40.01 4.46
97 98 2.039624 GGAGTGAGCCAGAGGGGA 59.960 66.667 0.00 0.00 40.01 4.81
98 99 3.465403 CGGAGTGAGCCAGAGGGG 61.465 72.222 0.00 0.00 40.85 4.79
99 100 3.465403 CCGGAGTGAGCCAGAGGG 61.465 72.222 0.00 0.00 37.18 4.30
100 101 4.154347 GCCGGAGTGAGCCAGAGG 62.154 72.222 5.05 0.00 0.00 3.69
106 107 4.314440 TGTGTGGCCGGAGTGAGC 62.314 66.667 5.05 0.00 0.00 4.26
107 108 2.357517 GTGTGTGGCCGGAGTGAG 60.358 66.667 5.05 0.00 0.00 3.51
108 109 1.116536 TAAGTGTGTGGCCGGAGTGA 61.117 55.000 5.05 0.00 0.00 3.41
109 110 0.949105 GTAAGTGTGTGGCCGGAGTG 60.949 60.000 5.05 0.00 0.00 3.51
110 111 1.370064 GTAAGTGTGTGGCCGGAGT 59.630 57.895 5.05 0.00 0.00 3.85
111 112 0.670546 CTGTAAGTGTGTGGCCGGAG 60.671 60.000 5.05 0.00 0.00 4.63
112 113 1.369692 CTGTAAGTGTGTGGCCGGA 59.630 57.895 5.05 0.00 0.00 5.14
113 114 2.325082 GCTGTAAGTGTGTGGCCGG 61.325 63.158 0.00 0.00 35.30 6.13
114 115 1.301716 AGCTGTAAGTGTGTGGCCG 60.302 57.895 0.00 0.00 35.30 6.13
115 116 0.535102 ACAGCTGTAAGTGTGTGGCC 60.535 55.000 20.16 0.00 32.93 5.36
116 117 0.868406 GACAGCTGTAAGTGTGTGGC 59.132 55.000 21.73 0.00 34.08 5.01
117 118 1.867233 GTGACAGCTGTAAGTGTGTGG 59.133 52.381 21.73 0.00 34.08 4.17
118 119 2.285220 GTGTGACAGCTGTAAGTGTGTG 59.715 50.000 21.73 0.00 34.08 3.82
119 120 2.550978 GTGTGACAGCTGTAAGTGTGT 58.449 47.619 21.73 0.00 36.20 3.72
120 121 1.522676 CGTGTGACAGCTGTAAGTGTG 59.477 52.381 21.73 4.68 35.30 3.82
121 122 1.852942 CGTGTGACAGCTGTAAGTGT 58.147 50.000 21.73 0.00 35.30 3.55
122 123 0.508641 GCGTGTGACAGCTGTAAGTG 59.491 55.000 21.73 10.13 35.30 3.16
123 124 0.104120 TGCGTGTGACAGCTGTAAGT 59.896 50.000 21.73 0.00 35.30 2.24
124 125 0.508641 GTGCGTGTGACAGCTGTAAG 59.491 55.000 21.73 8.06 0.00 2.34
125 126 1.212455 CGTGCGTGTGACAGCTGTAA 61.212 55.000 21.73 10.36 0.00 2.41
126 127 1.660264 CGTGCGTGTGACAGCTGTA 60.660 57.895 21.73 0.32 0.00 2.74
127 128 2.961721 CGTGCGTGTGACAGCTGT 60.962 61.111 21.88 21.88 0.00 4.40
128 129 4.360027 GCGTGCGTGTGACAGCTG 62.360 66.667 13.48 13.48 0.00 4.24
129 130 4.889856 TGCGTGCGTGTGACAGCT 62.890 61.111 8.13 0.00 0.00 4.24
130 131 4.649954 GTGCGTGCGTGTGACAGC 62.650 66.667 0.00 0.00 0.00 4.40
131 132 2.932083 GAGTGCGTGCGTGTGACAG 61.932 63.158 0.00 0.00 0.00 3.51
132 133 2.959599 GAGTGCGTGCGTGTGACA 60.960 61.111 0.00 0.00 0.00 3.58
133 134 2.310233 ATGAGTGCGTGCGTGTGAC 61.310 57.895 0.00 0.00 0.00 3.67
134 135 2.028925 ATGAGTGCGTGCGTGTGA 59.971 55.556 0.00 0.00 0.00 3.58
135 136 2.171701 CATGAGTGCGTGCGTGTG 59.828 61.111 0.00 0.00 0.00 3.82
136 137 3.716006 GCATGAGTGCGTGCGTGT 61.716 61.111 0.00 0.00 46.06 4.49
145 146 0.520404 GTCTGTGCCAAGCATGAGTG 59.480 55.000 0.00 0.00 41.91 3.51
146 147 0.109153 TGTCTGTGCCAAGCATGAGT 59.891 50.000 0.00 0.00 41.91 3.41
147 148 1.068748 GTTGTCTGTGCCAAGCATGAG 60.069 52.381 0.00 0.00 41.91 2.90
148 149 0.953727 GTTGTCTGTGCCAAGCATGA 59.046 50.000 0.00 0.00 41.91 3.07
149 150 0.956633 AGTTGTCTGTGCCAAGCATG 59.043 50.000 0.00 0.00 41.91 4.06
150 151 0.956633 CAGTTGTCTGTGCCAAGCAT 59.043 50.000 0.00 0.00 41.91 3.79
151 152 1.102809 CCAGTTGTCTGTGCCAAGCA 61.103 55.000 0.00 0.00 39.82 3.91
152 153 1.656441 CCAGTTGTCTGTGCCAAGC 59.344 57.895 0.00 0.00 39.82 4.01
153 154 1.102809 TGCCAGTTGTCTGTGCCAAG 61.103 55.000 0.00 0.00 39.82 3.61
154 155 1.077140 TGCCAGTTGTCTGTGCCAA 60.077 52.632 0.00 0.00 39.82 4.52
155 156 1.526686 CTGCCAGTTGTCTGTGCCA 60.527 57.895 0.00 0.00 39.82 4.92
156 157 1.510480 GACTGCCAGTTGTCTGTGCC 61.510 60.000 0.00 0.00 39.82 5.01
157 158 0.815213 TGACTGCCAGTTGTCTGTGC 60.815 55.000 0.00 0.00 39.82 4.57
158 159 0.940126 GTGACTGCCAGTTGTCTGTG 59.060 55.000 0.00 0.00 39.82 3.66
159 160 0.530650 CGTGACTGCCAGTTGTCTGT 60.531 55.000 0.00 0.00 39.82 3.41
160 161 1.835483 GCGTGACTGCCAGTTGTCTG 61.835 60.000 0.00 0.00 41.01 3.51
161 162 1.595382 GCGTGACTGCCAGTTGTCT 60.595 57.895 0.00 0.00 34.57 3.41
162 163 2.939022 GCGTGACTGCCAGTTGTC 59.061 61.111 0.00 0.00 0.00 3.18
163 164 2.967076 CGCGTGACTGCCAGTTGT 60.967 61.111 0.00 0.00 0.00 3.32
164 165 3.716006 CCGCGTGACTGCCAGTTG 61.716 66.667 4.92 0.00 0.00 3.16
165 166 4.235762 ACCGCGTGACTGCCAGTT 62.236 61.111 4.92 0.00 0.00 3.16
166 167 4.969196 CACCGCGTGACTGCCAGT 62.969 66.667 4.92 0.00 35.23 4.00
192 193 3.939837 ATCTGTCACCGCGGCAGTG 62.940 63.158 28.58 17.25 36.54 3.66
193 194 3.695606 ATCTGTCACCGCGGCAGT 61.696 61.111 28.58 12.10 0.00 4.40
194 195 3.190849 CATCTGTCACCGCGGCAG 61.191 66.667 28.58 24.13 0.00 4.85
195 196 4.758251 CCATCTGTCACCGCGGCA 62.758 66.667 28.58 14.94 0.00 5.69
196 197 3.950794 TTCCATCTGTCACCGCGGC 62.951 63.158 28.58 10.14 0.00 6.53
197 198 2.100631 GTTCCATCTGTCACCGCGG 61.101 63.158 26.86 26.86 0.00 6.46
198 199 2.100631 GGTTCCATCTGTCACCGCG 61.101 63.158 0.00 0.00 0.00 6.46
199 200 1.745489 GGGTTCCATCTGTCACCGC 60.745 63.158 0.00 0.00 0.00 5.68
200 201 1.137086 CTAGGGTTCCATCTGTCACCG 59.863 57.143 0.00 0.00 0.00 4.94
201 202 2.093447 CACTAGGGTTCCATCTGTCACC 60.093 54.545 0.00 0.00 0.00 4.02
202 203 2.093447 CCACTAGGGTTCCATCTGTCAC 60.093 54.545 0.00 0.00 0.00 3.67
203 204 2.187958 CCACTAGGGTTCCATCTGTCA 58.812 52.381 0.00 0.00 0.00 3.58
204 205 2.990066 CCACTAGGGTTCCATCTGTC 57.010 55.000 0.00 0.00 0.00 3.51
322 323 4.398247 CAACGAAAAGCAGATTCTACAGC 58.602 43.478 0.00 0.00 0.00 4.40
434 435 2.557924 TGCACAAGGATTAGCCAAGTTG 59.442 45.455 0.00 0.00 40.02 3.16
462 463 0.323542 ACGTGGAGGGTGGAGTAGAG 60.324 60.000 0.00 0.00 0.00 2.43
473 474 3.057337 ACGGGAAGAACGTGGAGG 58.943 61.111 0.00 0.00 43.78 4.30
478 479 2.241880 CGTTGCACGGGAAGAACGT 61.242 57.895 8.40 0.00 46.82 3.99
479 480 2.549282 CGTTGCACGGGAAGAACG 59.451 61.111 0.00 0.00 38.08 3.95
524 527 0.734942 GTCGCGCTAAGCTTACCACA 60.735 55.000 5.56 0.00 45.59 4.17
525 528 1.419107 GGTCGCGCTAAGCTTACCAC 61.419 60.000 5.56 0.00 44.30 4.16
527 530 0.529992 ATGGTCGCGCTAAGCTTACC 60.530 55.000 5.56 4.39 44.80 2.85
528 531 0.853419 GATGGTCGCGCTAAGCTTAC 59.147 55.000 5.56 0.00 45.59 2.34
532 535 0.311165 TCTAGATGGTCGCGCTAAGC 59.689 55.000 5.56 3.62 43.95 3.09
614 617 1.002251 GCCATACGTCTCTCCTTCGAG 60.002 57.143 0.00 0.00 37.48 4.04
645 648 1.376166 CGGTCAACATGGGCGGTTA 60.376 57.895 0.00 0.00 0.00 2.85
646 649 2.671619 CGGTCAACATGGGCGGTT 60.672 61.111 0.00 0.00 0.00 4.44
945 948 7.544622 GTCGTCATCATATTTAGGGCTATACA 58.455 38.462 0.00 0.00 0.00 2.29
1131 1135 0.817229 TGTCTCGCAACATTGTGCCA 60.817 50.000 0.14 0.00 41.73 4.92
1160 1164 1.271934 GACACTGAGAAGAGAGCTGCA 59.728 52.381 1.02 0.00 0.00 4.41
1305 1309 2.224621 ACAGCACAGTGATACAAGGCTT 60.225 45.455 4.15 0.00 0.00 4.35
1321 1325 2.093181 GGTGGTATGGTATGACACAGCA 60.093 50.000 0.00 0.00 33.91 4.41
1356 1360 1.228124 CAGCGACCCCAGGTTTTCA 60.228 57.895 0.00 0.00 35.25 2.69
1363 1367 4.162690 GGTAGCCAGCGACCCCAG 62.163 72.222 10.52 0.00 36.00 4.45
1488 1492 5.364735 ATCACTATCACAGTGGTCATCATCA 59.635 40.000 0.00 0.00 46.05 3.07
1530 1534 4.641989 GCACCATCCAATATGTCAGAAGTT 59.358 41.667 0.00 0.00 0.00 2.66
1611 1615 0.037512 CTCCGGCATCAGCTATCAGG 60.038 60.000 0.00 0.00 41.70 3.86
1677 1681 8.609483 ACAGATTCATAGGAAACATAGGCATAT 58.391 33.333 0.00 0.00 36.43 1.78
1729 1733 8.296713 TGGAAACAACTAGCTGAAAAATATCAC 58.703 33.333 0.00 0.00 37.44 3.06
1898 1902 6.930068 ACACTAGAACTGTTACCCATAACT 57.070 37.500 0.00 0.00 41.24 2.24
1925 1929 0.980231 TGCACCAGGTTGCCCTTTTT 60.980 50.000 10.46 0.00 42.25 1.94
1926 1930 0.763986 ATGCACCAGGTTGCCCTTTT 60.764 50.000 10.46 0.00 42.25 2.27
1927 1931 1.152269 ATGCACCAGGTTGCCCTTT 60.152 52.632 10.46 0.00 42.25 3.11
1928 1932 1.909781 CATGCACCAGGTTGCCCTT 60.910 57.895 10.46 0.00 42.25 3.95
1929 1933 1.788518 TACATGCACCAGGTTGCCCT 61.789 55.000 10.46 0.00 42.25 5.19
1930 1934 1.304052 TACATGCACCAGGTTGCCC 60.304 57.895 10.46 0.00 42.25 5.36
1931 1935 1.937546 GCTACATGCACCAGGTTGCC 61.938 60.000 10.46 0.00 39.88 4.52
1932 1936 0.962356 AGCTACATGCACCAGGTTGC 60.962 55.000 8.03 8.03 44.17 4.17
1933 1937 1.089920 GAGCTACATGCACCAGGTTG 58.910 55.000 0.00 0.00 45.94 3.77
1934 1938 3.558674 GAGCTACATGCACCAGGTT 57.441 52.632 0.00 0.00 45.94 3.50
1956 1960 1.899437 TTCCCTAGACCCTGCGCAAG 61.899 60.000 13.05 4.91 43.44 4.01
1957 1961 1.899437 CTTCCCTAGACCCTGCGCAA 61.899 60.000 13.05 0.00 0.00 4.85
1958 1962 2.284331 TTCCCTAGACCCTGCGCA 60.284 61.111 10.98 10.98 0.00 6.09
1959 1963 2.501610 CTTCCCTAGACCCTGCGC 59.498 66.667 0.00 0.00 0.00 6.09
1960 1964 2.435693 CCCTTCCCTAGACCCTGCG 61.436 68.421 0.00 0.00 0.00 5.18
1961 1965 1.307084 ACCCTTCCCTAGACCCTGC 60.307 63.158 0.00 0.00 0.00 4.85
1962 1966 0.691413 GGACCCTTCCCTAGACCCTG 60.691 65.000 0.00 0.00 35.57 4.45
1963 1967 1.710972 GGACCCTTCCCTAGACCCT 59.289 63.158 0.00 0.00 35.57 4.34
1964 1968 1.761271 CGGACCCTTCCCTAGACCC 60.761 68.421 0.00 0.00 38.99 4.46
1965 1969 1.042003 GTCGGACCCTTCCCTAGACC 61.042 65.000 0.00 0.00 38.99 3.85
1966 1970 1.042003 GGTCGGACCCTTCCCTAGAC 61.042 65.000 16.55 0.00 38.99 2.59
1967 1971 1.309006 GGTCGGACCCTTCCCTAGA 59.691 63.158 16.55 0.00 38.99 2.43
1968 1972 1.001248 TGGTCGGACCCTTCCCTAG 59.999 63.158 23.81 0.00 38.99 3.02
1969 1973 1.305549 GTGGTCGGACCCTTCCCTA 60.306 63.158 23.81 0.61 38.99 3.53
1970 1974 2.606826 GTGGTCGGACCCTTCCCT 60.607 66.667 23.81 0.00 38.99 4.20
1971 1975 1.775934 AAAGTGGTCGGACCCTTCCC 61.776 60.000 23.81 7.17 38.99 3.97
1972 1976 0.605589 CAAAGTGGTCGGACCCTTCC 60.606 60.000 23.81 9.51 37.50 3.46
1973 1977 0.605589 CCAAAGTGGTCGGACCCTTC 60.606 60.000 23.81 13.97 37.50 3.46
1974 1978 1.454539 CCAAAGTGGTCGGACCCTT 59.545 57.895 23.81 21.08 37.50 3.95
1975 1979 2.526046 CCCAAAGTGGTCGGACCCT 61.526 63.158 23.81 16.82 37.50 4.34
1976 1980 2.033602 CCCAAAGTGGTCGGACCC 59.966 66.667 23.81 14.91 37.50 4.46
1977 1981 1.302271 GACCCAAAGTGGTCGGACC 60.302 63.158 20.36 20.36 44.98 4.46
1978 1982 4.373771 GACCCAAAGTGGTCGGAC 57.626 61.111 0.00 0.00 44.98 4.79
1983 1987 3.131755 GCGTACTATAGACCCAAAGTGGT 59.868 47.826 6.78 0.00 42.79 4.16
1984 1988 3.131577 TGCGTACTATAGACCCAAAGTGG 59.868 47.826 6.78 0.00 37.25 4.00
1985 1989 4.360563 CTGCGTACTATAGACCCAAAGTG 58.639 47.826 6.78 0.00 0.00 3.16
1986 1990 3.181478 GCTGCGTACTATAGACCCAAAGT 60.181 47.826 6.78 0.00 0.00 2.66
1987 1991 3.381949 GCTGCGTACTATAGACCCAAAG 58.618 50.000 6.78 0.00 0.00 2.77
1988 1992 2.101917 GGCTGCGTACTATAGACCCAAA 59.898 50.000 6.78 0.00 0.00 3.28
1989 1993 1.684983 GGCTGCGTACTATAGACCCAA 59.315 52.381 6.78 0.00 0.00 4.12
1990 1994 1.133575 AGGCTGCGTACTATAGACCCA 60.134 52.381 6.78 0.00 0.00 4.51
1991 1995 1.618487 AGGCTGCGTACTATAGACCC 58.382 55.000 6.78 0.00 0.00 4.46
1992 1996 3.552478 GGAAAGGCTGCGTACTATAGACC 60.552 52.174 6.78 0.00 0.00 3.85
1993 1997 3.067742 TGGAAAGGCTGCGTACTATAGAC 59.932 47.826 6.78 0.00 0.00 2.59
1994 1998 3.067742 GTGGAAAGGCTGCGTACTATAGA 59.932 47.826 6.78 0.00 0.00 1.98
1995 1999 3.381949 GTGGAAAGGCTGCGTACTATAG 58.618 50.000 0.00 0.00 0.00 1.31
1996 2000 2.223641 CGTGGAAAGGCTGCGTACTATA 60.224 50.000 0.00 0.00 0.00 1.31
1997 2001 1.470979 CGTGGAAAGGCTGCGTACTAT 60.471 52.381 0.00 0.00 0.00 2.12
1998 2002 0.108992 CGTGGAAAGGCTGCGTACTA 60.109 55.000 0.00 0.00 0.00 1.82
1999 2003 1.374252 CGTGGAAAGGCTGCGTACT 60.374 57.895 0.00 0.00 0.00 2.73
2000 2004 0.947180 TTCGTGGAAAGGCTGCGTAC 60.947 55.000 0.00 0.00 0.00 3.67
2001 2005 0.249953 TTTCGTGGAAAGGCTGCGTA 60.250 50.000 0.00 0.00 0.00 4.42
2002 2006 1.098712 TTTTCGTGGAAAGGCTGCGT 61.099 50.000 0.00 0.00 32.93 5.24
2003 2007 0.240945 ATTTTCGTGGAAAGGCTGCG 59.759 50.000 0.00 0.00 32.93 5.18
2004 2008 2.061028 CAATTTTCGTGGAAAGGCTGC 58.939 47.619 0.00 0.00 32.93 5.25
2005 2009 3.369546 ACAATTTTCGTGGAAAGGCTG 57.630 42.857 0.00 0.00 32.93 4.85
2006 2010 5.722021 ATTACAATTTTCGTGGAAAGGCT 57.278 34.783 0.00 0.00 32.93 4.58
2007 2011 7.876896 TTTATTACAATTTTCGTGGAAAGGC 57.123 32.000 0.00 0.00 32.93 4.35
2073 2077 6.091713 CGTTAGACCGTTACTCATTTCCAATT 59.908 38.462 0.00 0.00 0.00 2.32
2084 2088 6.441093 TGATGTTATCGTTAGACCGTTACT 57.559 37.500 0.00 0.00 0.00 2.24
2130 2134 8.410141 AGAAATTTTCGTGGAAGTGAATGTTTA 58.590 29.630 3.57 0.00 34.02 2.01
2182 2186 9.956720 ATTTGTTCAGTTGACAGAAAAGAATAG 57.043 29.630 0.00 0.00 0.00 1.73
2235 2239 6.916360 TGGCATATTTCCAATTCCCTATTC 57.084 37.500 0.00 0.00 0.00 1.75
2295 2299 1.153168 GTCGGCAGCCATACACCAT 60.153 57.895 13.30 0.00 0.00 3.55
2413 2417 7.730364 ATAGGTCCAAATTAATCGATCACAC 57.270 36.000 0.00 0.00 0.00 3.82
2420 2424 8.620416 TGTCATGAAATAGGTCCAAATTAATCG 58.380 33.333 0.00 0.00 0.00 3.34
2464 2468 7.865820 TGTCTTCTATTTCCTCATGATCCTTT 58.134 34.615 0.00 0.00 0.00 3.11
2563 2567 5.079397 GTGTTAACACAGGAACTCTTTCG 57.921 43.478 29.46 0.00 45.75 3.46
2639 2643 2.609459 ACTCACAAGTTTTGCGAGTCTG 59.391 45.455 6.65 0.00 46.83 3.51
2762 2770 4.755266 AGTAATGACTTAAGACCCGCAT 57.245 40.909 10.09 2.12 28.61 4.73
2874 2882 6.757897 TTGATGACCTGGTTGATATTTGAC 57.242 37.500 0.00 0.00 0.00 3.18
2881 2889 4.598036 AAGGATTGATGACCTGGTTGAT 57.402 40.909 0.00 0.00 36.56 2.57
2905 2913 0.687354 AGCATATCCACGCCTTAGGG 59.313 55.000 0.00 0.00 0.00 3.53
2975 2983 8.542497 ACAGTAAACGAAAAGCTATGTAATCA 57.458 30.769 0.00 0.00 0.00 2.57
2980 2988 6.932960 ACCTTACAGTAAACGAAAAGCTATGT 59.067 34.615 0.00 0.00 0.00 2.29
2981 2989 7.360575 ACCTTACAGTAAACGAAAAGCTATG 57.639 36.000 0.00 0.00 0.00 2.23
3022 3030 7.133891 AGTACAAAGTGATGATTGCAACTAC 57.866 36.000 0.00 0.00 0.00 2.73
3178 3186 3.057969 AGATTCAGAAACATGCACGGA 57.942 42.857 0.00 0.00 0.00 4.69
3242 3250 6.707440 ATGGTGTTGTTAGATTTGTCACAA 57.293 33.333 0.00 0.00 0.00 3.33
3244 3252 9.522804 TTTAAATGGTGTTGTTAGATTTGTCAC 57.477 29.630 0.00 0.00 0.00 3.67
3354 3362 9.787435 CATGGCTTGGGTATACTTTATAAGTAA 57.213 33.333 2.25 0.00 46.24 2.24
3356 3364 6.715264 GCATGGCTTGGGTATACTTTATAAGT 59.285 38.462 2.25 0.00 45.40 2.24
3357 3365 6.942576 AGCATGGCTTGGGTATACTTTATAAG 59.057 38.462 2.25 2.62 33.89 1.73
3358 3366 6.848069 AGCATGGCTTGGGTATACTTTATAA 58.152 36.000 2.25 0.00 33.89 0.98
3359 3367 6.448369 AGCATGGCTTGGGTATACTTTATA 57.552 37.500 2.25 0.00 33.89 0.98
3360 3368 5.324832 AGCATGGCTTGGGTATACTTTAT 57.675 39.130 2.25 0.00 33.89 1.40
3361 3369 4.788925 AGCATGGCTTGGGTATACTTTA 57.211 40.909 2.25 0.00 33.89 1.85
3362 3370 3.669939 AGCATGGCTTGGGTATACTTT 57.330 42.857 2.25 0.00 33.89 2.66
3374 3382 1.841302 TTGTCGAGGGAAGCATGGCT 61.841 55.000 0.00 0.00 42.56 4.75
3375 3383 0.960364 TTTGTCGAGGGAAGCATGGC 60.960 55.000 0.00 0.00 0.00 4.40
3376 3384 1.089920 CTTTGTCGAGGGAAGCATGG 58.910 55.000 0.00 0.00 0.00 3.66
3377 3385 1.089920 CCTTTGTCGAGGGAAGCATG 58.910 55.000 0.00 0.00 32.94 4.06
3378 3386 0.693049 ACCTTTGTCGAGGGAAGCAT 59.307 50.000 0.00 0.00 41.31 3.79
3379 3387 0.034896 GACCTTTGTCGAGGGAAGCA 59.965 55.000 0.00 0.00 41.31 3.91
3380 3388 2.842320 GACCTTTGTCGAGGGAAGC 58.158 57.895 0.00 0.00 41.31 3.86
3389 3397 1.003866 GAACACACTGCGACCTTTGTC 60.004 52.381 0.00 0.00 38.18 3.18
3390 3398 1.014352 GAACACACTGCGACCTTTGT 58.986 50.000 0.00 0.00 0.00 2.83
3391 3399 1.299541 AGAACACACTGCGACCTTTG 58.700 50.000 0.00 0.00 0.00 2.77
3392 3400 2.102588 AGTAGAACACACTGCGACCTTT 59.897 45.455 0.00 0.00 0.00 3.11
3393 3401 1.687123 AGTAGAACACACTGCGACCTT 59.313 47.619 0.00 0.00 0.00 3.50
3394 3402 1.000163 CAGTAGAACACACTGCGACCT 60.000 52.381 0.00 0.00 37.22 3.85
3395 3403 1.419374 CAGTAGAACACACTGCGACC 58.581 55.000 0.00 0.00 37.22 4.79
3396 3404 1.000607 TCCAGTAGAACACACTGCGAC 60.001 52.381 0.00 0.00 41.72 5.19
3397 3405 1.324383 TCCAGTAGAACACACTGCGA 58.676 50.000 0.00 0.00 41.72 5.10
3398 3406 2.148916 TTCCAGTAGAACACACTGCG 57.851 50.000 0.00 0.00 41.72 5.18
3399 3407 4.627467 CAGTATTCCAGTAGAACACACTGC 59.373 45.833 0.00 0.00 41.72 4.40
3400 3408 4.627467 GCAGTATTCCAGTAGAACACACTG 59.373 45.833 0.00 0.00 42.52 3.66
3401 3409 4.528596 AGCAGTATTCCAGTAGAACACACT 59.471 41.667 0.00 0.00 34.12 3.55
3402 3410 4.627467 CAGCAGTATTCCAGTAGAACACAC 59.373 45.833 0.00 0.00 34.12 3.82
3403 3411 4.526650 TCAGCAGTATTCCAGTAGAACACA 59.473 41.667 0.00 0.00 34.12 3.72
3404 3412 4.865365 GTCAGCAGTATTCCAGTAGAACAC 59.135 45.833 0.00 0.00 37.29 3.32
3405 3413 4.526650 TGTCAGCAGTATTCCAGTAGAACA 59.473 41.667 0.00 0.00 37.29 3.18
3406 3414 5.073311 TGTCAGCAGTATTCCAGTAGAAC 57.927 43.478 0.00 0.00 37.29 3.01
3407 3415 5.011635 TGTTGTCAGCAGTATTCCAGTAGAA 59.988 40.000 0.00 0.00 39.32 2.10
3408 3416 4.526650 TGTTGTCAGCAGTATTCCAGTAGA 59.473 41.667 0.00 0.00 0.00 2.59
3409 3417 4.820897 TGTTGTCAGCAGTATTCCAGTAG 58.179 43.478 0.00 0.00 0.00 2.57
3410 3418 4.882842 TGTTGTCAGCAGTATTCCAGTA 57.117 40.909 0.00 0.00 0.00 2.74
3411 3419 3.769739 TGTTGTCAGCAGTATTCCAGT 57.230 42.857 0.00 0.00 0.00 4.00
3412 3420 4.318332 TCTTGTTGTCAGCAGTATTCCAG 58.682 43.478 0.00 0.00 0.00 3.86
3413 3421 4.350368 TCTTGTTGTCAGCAGTATTCCA 57.650 40.909 0.00 0.00 0.00 3.53
3414 3422 5.689383 TTTCTTGTTGTCAGCAGTATTCC 57.311 39.130 0.00 0.00 0.00 3.01
3415 3423 7.196331 ACTTTTTCTTGTTGTCAGCAGTATTC 58.804 34.615 0.00 0.00 0.00 1.75
3416 3424 7.100458 ACTTTTTCTTGTTGTCAGCAGTATT 57.900 32.000 0.00 0.00 0.00 1.89
3417 3425 6.699575 ACTTTTTCTTGTTGTCAGCAGTAT 57.300 33.333 0.00 0.00 0.00 2.12
3418 3426 7.801716 ATACTTTTTCTTGTTGTCAGCAGTA 57.198 32.000 0.00 0.00 0.00 2.74
3419 3427 6.699575 ATACTTTTTCTTGTTGTCAGCAGT 57.300 33.333 0.00 0.00 0.00 4.40
3420 3428 7.173218 TCCTATACTTTTTCTTGTTGTCAGCAG 59.827 37.037 0.00 0.00 0.00 4.24
3421 3429 6.995686 TCCTATACTTTTTCTTGTTGTCAGCA 59.004 34.615 0.00 0.00 0.00 4.41
3422 3430 7.435068 TCCTATACTTTTTCTTGTTGTCAGC 57.565 36.000 0.00 0.00 0.00 4.26
3780 3815 3.213206 TCCAGAATTGCGAGCCATTAT 57.787 42.857 0.00 0.00 0.00 1.28
3806 3841 0.602638 TCATCACGCACCTTGTGGAC 60.603 55.000 0.00 0.00 37.91 4.02
3834 3869 2.289010 CCCACCACAAATTTCAGAAGGC 60.289 50.000 0.00 0.00 0.00 4.35
3851 3886 2.308722 TGGAAGCCCCATCTCCCAC 61.309 63.158 0.00 0.00 40.82 4.61
3877 3912 2.094390 CACCAATCACCAATCAAGCCAG 60.094 50.000 0.00 0.00 0.00 4.85
3906 3941 1.272985 ACAGGGAAGGACTGAGAGAGG 60.273 57.143 0.00 0.00 39.24 3.69


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.