Multiple sequence alignment - TraesCS2A01G195200

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS2A01G195200 chr2A 100.000 2938 0 0 1 2938 164980493 164983430 0.000000e+00 5426.0
1 TraesCS2A01G195200 chr2A 87.161 849 70 17 1313 2136 164878442 164879276 0.000000e+00 928.0
2 TraesCS2A01G195200 chr2A 84.955 771 77 14 2198 2938 164879285 164880046 0.000000e+00 745.0
3 TraesCS2A01G195200 chr2A 92.769 484 16 5 1539 2022 165007301 165007765 0.000000e+00 682.0
4 TraesCS2A01G195200 chr2A 84.352 671 79 12 721 1375 165104285 165104945 4.130000e-178 634.0
5 TraesCS2A01G195200 chr2A 81.240 629 65 25 770 1375 164997651 164998249 2.670000e-125 459.0
6 TraesCS2A01G195200 chr2A 87.755 392 44 4 1452 1839 164998187 164998578 3.450000e-124 455.0
7 TraesCS2A01G195200 chr2A 77.119 708 101 29 706 1382 164866948 164867625 1.300000e-93 353.0
8 TraesCS2A01G195200 chr2A 92.053 151 9 3 1369 1516 164878426 164878576 2.970000e-50 209.0
9 TraesCS2A01G195200 chr2A 95.652 92 4 0 2122 2213 165007861 165007952 6.560000e-32 148.0
10 TraesCS2A01G195200 chr2A 78.000 250 37 15 2024 2259 165007799 165008044 1.100000e-29 141.0
11 TraesCS2A01G195200 chr2A 87.059 85 6 2 371 452 165003570 165003652 1.120000e-14 91.6
12 TraesCS2A01G195200 chr2D 86.876 1021 102 18 1372 2373 136612351 136611344 0.000000e+00 1114.0
13 TraesCS2A01G195200 chr2D 88.497 765 62 10 627 1383 136634736 136633990 0.000000e+00 902.0
14 TraesCS2A01G195200 chr2D 89.612 645 28 11 1395 2022 136607897 136607275 0.000000e+00 784.0
15 TraesCS2A01G195200 chr2D 85.209 622 69 13 778 1383 136613001 136612387 4.160000e-173 617.0
16 TraesCS2A01G195200 chr2D 84.455 624 72 11 770 1380 136526368 136525757 2.520000e-165 592.0
17 TraesCS2A01G195200 chr2D 83.333 600 68 17 1426 2013 136525850 136525271 2.590000e-145 525.0
18 TraesCS2A01G195200 chr2D 81.304 690 90 27 718 1378 136515733 136515054 9.330000e-145 523.0
19 TraesCS2A01G195200 chr2D 87.442 430 42 4 2173 2598 136607129 136606708 4.400000e-133 484.0
20 TraesCS2A01G195200 chr2D 86.598 388 38 11 770 1150 136608394 136608014 1.630000e-112 416.0
21 TraesCS2A01G195200 chr2D 78.693 704 84 31 706 1378 136651679 136651011 2.730000e-110 409.0
22 TraesCS2A01G195200 chr2D 81.951 410 45 15 1539 1933 136514889 136514494 1.310000e-83 320.0
23 TraesCS2A01G195200 chr2D 89.498 219 16 3 371 584 136634960 136634744 1.340000e-68 270.0
24 TraesCS2A01G195200 chr2D 80.874 366 46 10 2596 2937 483629100 483628735 1.740000e-67 267.0
25 TraesCS2A01G195200 chr2D 92.537 134 10 0 1314 1447 136612340 136612207 2.990000e-45 193.0
26 TraesCS2A01G195200 chr2D 92.079 101 6 1 245 345 136634566 136634468 1.100000e-29 141.0
27 TraesCS2A01G195200 chr2D 95.294 85 4 0 245 329 136612983 136612899 5.110000e-28 135.0
28 TraesCS2A01G195200 chr2D 95.714 70 3 0 1385 1454 136612454 136612385 2.390000e-21 113.0
29 TraesCS2A01G195200 chr2D 95.588 68 3 0 1387 1454 136634055 136633988 3.100000e-20 110.0
30 TraesCS2A01G195200 chr2D 91.781 73 5 1 2111 2182 136631601 136631529 1.860000e-17 100.0
31 TraesCS2A01G195200 chr2D 85.882 85 7 4 371 452 136521470 136521388 5.220000e-13 86.1
32 TraesCS2A01G195200 chr2B 82.974 1251 142 42 1385 2598 195167359 195166143 0.000000e+00 1064.0
33 TraesCS2A01G195200 chr2B 90.180 611 34 6 774 1378 195060048 195059458 0.000000e+00 773.0
34 TraesCS2A01G195200 chr2B 88.795 589 26 12 1452 2022 195059522 195058956 0.000000e+00 686.0
35 TraesCS2A01G195200 chr2B 83.046 755 88 23 653 1380 194955139 194954398 0.000000e+00 649.0
36 TraesCS2A01G195200 chr2B 85.381 643 59 14 823 1447 195167853 195167228 4.130000e-178 634.0
37 TraesCS2A01G195200 chr2B 83.618 586 64 9 2377 2938 793365504 793366081 3.360000e-144 521.0
38 TraesCS2A01G195200 chr2B 86.525 423 46 4 2178 2598 195058814 195058401 3.450000e-124 455.0
39 TraesCS2A01G195200 chr2B 81.405 484 52 24 669 1131 194998189 194997723 7.740000e-96 361.0
40 TraesCS2A01G195200 chr2B 87.582 306 23 1 371 676 195168608 195168318 1.010000e-89 340.0
41 TraesCS2A01G195200 chr2B 83.152 368 34 13 2596 2938 195165991 195165627 7.910000e-81 311.0
42 TraesCS2A01G195200 chr2B 89.781 137 7 3 2025 2160 195058924 195058794 5.040000e-38 169.0
43 TraesCS2A01G195200 chr2B 94.521 73 4 0 708 780 195168316 195168244 2.390000e-21 113.0
44 TraesCS2A01G195200 chr2B 89.130 92 7 1 1452 1543 195368015 195367927 8.610000e-21 111.0
45 TraesCS2A01G195200 chr1B 84.375 672 78 13 721 1375 512051622 512052283 4.130000e-178 634.0
46 TraesCS2A01G195200 chr6A 83.788 586 63 12 2377 2938 574715144 574715721 7.210000e-146 527.0
47 TraesCS2A01G195200 chr6A 96.277 188 7 0 1 188 607035066 607035253 2.840000e-80 309.0
48 TraesCS2A01G195200 chr7B 82.964 587 67 13 2377 2938 88303017 88303595 1.570000e-137 499.0
49 TraesCS2A01G195200 chr1A 83.585 530 53 15 2434 2938 13821619 13821099 1.590000e-127 466.0
50 TraesCS2A01G195200 chr7A 79.829 585 86 12 2377 2937 193118813 193118237 5.900000e-107 398.0
51 TraesCS2A01G195200 chr5B 81.564 358 42 6 2605 2938 377829340 377828983 1.040000e-69 274.0
52 TraesCS2A01G195200 chr6B 85.870 184 25 1 2756 2938 641148533 641148716 8.310000e-46 195.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS2A01G195200 chr2A 164980493 164983430 2937 False 5426.000000 5426 100.000000 1 2938 1 chr2A.!!$F2 2937
1 TraesCS2A01G195200 chr2A 165104285 165104945 660 False 634.000000 634 84.352000 721 1375 1 chr2A.!!$F3 654
2 TraesCS2A01G195200 chr2A 164878426 164880046 1620 False 627.333333 928 88.056333 1313 2938 3 chr2A.!!$F4 1625
3 TraesCS2A01G195200 chr2A 164997651 164998578 927 False 457.000000 459 84.497500 770 1839 2 chr2A.!!$F5 1069
4 TraesCS2A01G195200 chr2A 164866948 164867625 677 False 353.000000 353 77.119000 706 1382 1 chr2A.!!$F1 676
5 TraesCS2A01G195200 chr2A 165003570 165008044 4474 False 265.650000 682 88.370000 371 2259 4 chr2A.!!$F6 1888
6 TraesCS2A01G195200 chr2D 136606708 136613001 6293 True 482.000000 1114 89.910250 245 2598 8 chr2D.!!$R5 2353
7 TraesCS2A01G195200 chr2D 136514494 136515733 1239 True 421.500000 523 81.627500 718 1933 2 chr2D.!!$R3 1215
8 TraesCS2A01G195200 chr2D 136651011 136651679 668 True 409.000000 409 78.693000 706 1378 1 chr2D.!!$R1 672
9 TraesCS2A01G195200 chr2D 136521388 136526368 4980 True 401.033333 592 84.556667 371 2013 3 chr2D.!!$R4 1642
10 TraesCS2A01G195200 chr2D 136631529 136634960 3431 True 304.600000 902 91.488600 245 2182 5 chr2D.!!$R6 1937
11 TraesCS2A01G195200 chr2B 194954398 194955139 741 True 649.000000 649 83.046000 653 1380 1 chr2B.!!$R1 727
12 TraesCS2A01G195200 chr2B 793365504 793366081 577 False 521.000000 521 83.618000 2377 2938 1 chr2B.!!$F1 561
13 TraesCS2A01G195200 chr2B 195058401 195060048 1647 True 520.750000 773 88.820250 774 2598 4 chr2B.!!$R4 1824
14 TraesCS2A01G195200 chr2B 195165627 195168608 2981 True 492.400000 1064 86.722000 371 2938 5 chr2B.!!$R5 2567
15 TraesCS2A01G195200 chr1B 512051622 512052283 661 False 634.000000 634 84.375000 721 1375 1 chr1B.!!$F1 654
16 TraesCS2A01G195200 chr6A 574715144 574715721 577 False 527.000000 527 83.788000 2377 2938 1 chr6A.!!$F1 561
17 TraesCS2A01G195200 chr7B 88303017 88303595 578 False 499.000000 499 82.964000 2377 2938 1 chr7B.!!$F1 561
18 TraesCS2A01G195200 chr1A 13821099 13821619 520 True 466.000000 466 83.585000 2434 2938 1 chr1A.!!$R1 504
19 TraesCS2A01G195200 chr7A 193118237 193118813 576 True 398.000000 398 79.829000 2377 2937 1 chr7A.!!$R1 560

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
228 229 0.039035 TCAGGAAAATGGAACCGGGG 59.961 55.0 6.32 0.0 0.00 5.73 F
232 233 0.039180 GAAAATGGAACCGGGGGACT 59.961 55.0 6.32 0.0 0.00 3.85 F
530 848 0.106335 CATGGGAAGCGATGCTCTCT 59.894 55.0 0.00 0.0 38.25 3.10 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1394 4527 0.107017 TGGCAGGGAAATAGCAGAGC 60.107 55.0 0.00 0.00 0.0 4.09 R
1518 4838 0.605319 TCGCGGGCTTCAAAGTTGAT 60.605 50.0 6.13 0.00 37.0 2.57 R
1988 11489 1.052287 GAACAAAACGGCGCATCTTG 58.948 50.0 10.83 9.41 0.0 3.02 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
23 24 2.840651 TCCAAGGAAAGTGGAGGAGATC 59.159 50.000 0.00 0.00 40.33 2.75
36 37 2.768527 GAGGAGATCCATGTGGTCTTCA 59.231 50.000 0.92 0.00 38.89 3.02
37 38 3.390639 GAGGAGATCCATGTGGTCTTCAT 59.609 47.826 0.92 1.54 38.89 2.57
38 39 3.390639 AGGAGATCCATGTGGTCTTCATC 59.609 47.826 0.92 2.59 38.89 2.92
39 40 3.495806 GGAGATCCATGTGGTCTTCATCC 60.496 52.174 0.00 0.00 36.34 3.51
40 41 2.441001 AGATCCATGTGGTCTTCATCCC 59.559 50.000 0.00 0.00 36.34 3.85
42 43 0.625316 CCATGTGGTCTTCATCCCCA 59.375 55.000 0.00 0.00 0.00 4.96
43 44 1.216175 CCATGTGGTCTTCATCCCCAT 59.784 52.381 0.00 0.00 0.00 4.00
44 45 2.304092 CATGTGGTCTTCATCCCCATG 58.696 52.381 0.00 0.00 0.00 3.66
45 46 1.667595 TGTGGTCTTCATCCCCATGA 58.332 50.000 0.00 0.00 37.24 3.07
46 47 1.561076 TGTGGTCTTCATCCCCATGAG 59.439 52.381 0.00 0.00 40.28 2.90
48 49 0.842635 GGTCTTCATCCCCATGAGCT 59.157 55.000 0.00 0.00 40.28 4.09
49 50 1.476471 GGTCTTCATCCCCATGAGCTG 60.476 57.143 0.00 0.00 40.28 4.24
50 51 1.487976 GTCTTCATCCCCATGAGCTGA 59.512 52.381 0.00 0.00 40.28 4.26
52 53 2.781757 TCTTCATCCCCATGAGCTGATT 59.218 45.455 0.00 0.00 40.28 2.57
53 54 2.945080 TCATCCCCATGAGCTGATTC 57.055 50.000 0.00 0.00 33.80 2.52
54 55 2.129363 TCATCCCCATGAGCTGATTCA 58.871 47.619 0.00 0.00 33.80 2.57
55 56 2.714793 TCATCCCCATGAGCTGATTCAT 59.285 45.455 0.00 0.00 38.30 2.57
62 63 1.940334 GAGCTGATTCATGCTCGCC 59.060 57.895 16.80 2.74 44.72 5.54
64 65 2.890109 GCTGATTCATGCTCGCCGG 61.890 63.158 0.00 0.00 0.00 6.13
67 68 2.203070 ATTCATGCTCGCCGGTCC 60.203 61.111 1.90 0.00 0.00 4.46
69 70 2.930385 ATTCATGCTCGCCGGTCCTG 62.930 60.000 1.90 0.00 0.00 3.86
71 72 4.457496 ATGCTCGCCGGTCCTGTG 62.457 66.667 1.90 0.00 0.00 3.66
74 75 2.738521 CTCGCCGGTCCTGTGTTG 60.739 66.667 1.90 0.00 0.00 3.33
79 80 2.113139 CGGTCCTGTGTTGGCCTT 59.887 61.111 3.32 0.00 0.00 4.35
81 82 1.515521 CGGTCCTGTGTTGGCCTTTC 61.516 60.000 3.32 0.00 0.00 2.62
82 83 1.179174 GGTCCTGTGTTGGCCTTTCC 61.179 60.000 3.32 0.00 0.00 3.13
84 85 0.178992 TCCTGTGTTGGCCTTTCCTG 60.179 55.000 3.32 0.00 35.26 3.86
85 86 0.178992 CCTGTGTTGGCCTTTCCTGA 60.179 55.000 3.32 0.00 35.26 3.86
89 90 1.073284 GTGTTGGCCTTTCCTGACCTA 59.927 52.381 3.32 0.00 35.26 3.08
90 91 1.351017 TGTTGGCCTTTCCTGACCTAG 59.649 52.381 3.32 0.00 35.26 3.02
92 93 1.742308 TGGCCTTTCCTGACCTAGTT 58.258 50.000 3.32 0.00 35.26 2.24
93 94 2.062636 TGGCCTTTCCTGACCTAGTTT 58.937 47.619 3.32 0.00 35.26 2.66
94 95 2.039879 TGGCCTTTCCTGACCTAGTTTC 59.960 50.000 3.32 0.00 35.26 2.78
95 96 2.306219 GGCCTTTCCTGACCTAGTTTCT 59.694 50.000 0.00 0.00 0.00 2.52
97 98 4.019591 GGCCTTTCCTGACCTAGTTTCTTA 60.020 45.833 0.00 0.00 0.00 2.10
98 99 5.339282 GGCCTTTCCTGACCTAGTTTCTTAT 60.339 44.000 0.00 0.00 0.00 1.73
99 100 5.586643 GCCTTTCCTGACCTAGTTTCTTATG 59.413 44.000 0.00 0.00 0.00 1.90
100 101 5.586643 CCTTTCCTGACCTAGTTTCTTATGC 59.413 44.000 0.00 0.00 0.00 3.14
101 102 6.374417 TTTCCTGACCTAGTTTCTTATGCT 57.626 37.500 0.00 0.00 0.00 3.79
102 103 5.344743 TCCTGACCTAGTTTCTTATGCTG 57.655 43.478 0.00 0.00 0.00 4.41
104 105 4.162320 CCTGACCTAGTTTCTTATGCTGGA 59.838 45.833 0.00 0.00 0.00 3.86
105 106 5.338381 CCTGACCTAGTTTCTTATGCTGGAA 60.338 44.000 0.00 0.00 0.00 3.53
106 107 5.734720 TGACCTAGTTTCTTATGCTGGAAG 58.265 41.667 0.00 0.00 0.00 3.46
124 125 6.870971 TGGAAGCTTATCACGTTAAAAACT 57.129 33.333 0.00 0.00 0.00 2.66
125 126 7.266922 TGGAAGCTTATCACGTTAAAAACTT 57.733 32.000 0.00 0.00 0.00 2.66
126 127 7.708998 TGGAAGCTTATCACGTTAAAAACTTT 58.291 30.769 0.00 0.00 0.00 2.66
127 128 8.838365 TGGAAGCTTATCACGTTAAAAACTTTA 58.162 29.630 0.00 0.00 0.00 1.85
128 129 9.836076 GGAAGCTTATCACGTTAAAAACTTTAT 57.164 29.630 0.00 0.00 0.00 1.40
154 155 7.837202 TGTTGTAATACTTTTAGCGCTATGT 57.163 32.000 19.60 18.48 0.00 2.29
155 156 8.259049 TGTTGTAATACTTTTAGCGCTATGTT 57.741 30.769 19.60 10.25 0.00 2.71
156 157 8.172484 TGTTGTAATACTTTTAGCGCTATGTTG 58.828 33.333 19.60 11.28 0.00 3.33
157 158 8.385111 GTTGTAATACTTTTAGCGCTATGTTGA 58.615 33.333 19.60 0.00 0.00 3.18
158 159 8.481974 TGTAATACTTTTAGCGCTATGTTGAA 57.518 30.769 19.60 6.15 0.00 2.69
159 160 8.385111 TGTAATACTTTTAGCGCTATGTTGAAC 58.615 33.333 19.60 14.32 0.00 3.18
160 161 4.680171 ACTTTTAGCGCTATGTTGAACC 57.320 40.909 19.60 0.00 0.00 3.62
161 162 4.324267 ACTTTTAGCGCTATGTTGAACCT 58.676 39.130 19.60 0.00 0.00 3.50
162 163 4.154195 ACTTTTAGCGCTATGTTGAACCTG 59.846 41.667 19.60 4.84 0.00 4.00
163 164 2.309528 TAGCGCTATGTTGAACCTGG 57.690 50.000 14.45 0.00 0.00 4.45
164 165 0.392998 AGCGCTATGTTGAACCTGGG 60.393 55.000 8.99 0.00 0.00 4.45
165 166 0.676782 GCGCTATGTTGAACCTGGGT 60.677 55.000 0.00 0.00 0.00 4.51
166 167 1.821216 CGCTATGTTGAACCTGGGTT 58.179 50.000 4.52 4.52 41.54 4.11
167 168 2.159382 CGCTATGTTGAACCTGGGTTT 58.841 47.619 6.46 0.00 38.60 3.27
168 169 3.340034 CGCTATGTTGAACCTGGGTTTA 58.660 45.455 6.46 0.00 38.60 2.01
169 170 3.374058 CGCTATGTTGAACCTGGGTTTAG 59.626 47.826 6.46 5.38 38.60 1.85
170 171 3.694566 GCTATGTTGAACCTGGGTTTAGG 59.305 47.826 6.46 0.00 43.71 2.69
171 172 1.989706 TGTTGAACCTGGGTTTAGGC 58.010 50.000 6.46 1.33 41.75 3.93
172 173 1.254026 GTTGAACCTGGGTTTAGGCC 58.746 55.000 6.46 0.00 41.75 5.19
173 174 0.854218 TTGAACCTGGGTTTAGGCCA 59.146 50.000 5.01 0.00 41.75 5.36
174 175 0.404040 TGAACCTGGGTTTAGGCCAG 59.596 55.000 5.01 0.00 41.75 4.85
175 176 0.404426 GAACCTGGGTTTAGGCCAGT 59.596 55.000 5.01 0.00 41.75 4.00
176 177 1.631898 GAACCTGGGTTTAGGCCAGTA 59.368 52.381 5.01 0.00 41.75 2.74
177 178 1.286248 ACCTGGGTTTAGGCCAGTAG 58.714 55.000 5.01 0.00 41.75 2.57
178 179 1.203389 ACCTGGGTTTAGGCCAGTAGA 60.203 52.381 5.01 0.00 41.75 2.59
179 180 2.127708 CCTGGGTTTAGGCCAGTAGAT 58.872 52.381 5.01 0.00 0.00 1.98
180 181 2.104963 CCTGGGTTTAGGCCAGTAGATC 59.895 54.545 5.01 0.00 0.00 2.75
181 182 1.760613 TGGGTTTAGGCCAGTAGATCG 59.239 52.381 5.01 0.00 0.00 3.69
182 183 1.761198 GGGTTTAGGCCAGTAGATCGT 59.239 52.381 5.01 0.00 0.00 3.73
183 184 2.169978 GGGTTTAGGCCAGTAGATCGTT 59.830 50.000 5.01 0.00 0.00 3.85
184 185 3.370209 GGGTTTAGGCCAGTAGATCGTTT 60.370 47.826 5.01 0.00 0.00 3.60
185 186 4.259356 GGTTTAGGCCAGTAGATCGTTTT 58.741 43.478 5.01 0.00 0.00 2.43
186 187 4.698780 GGTTTAGGCCAGTAGATCGTTTTT 59.301 41.667 5.01 0.00 0.00 1.94
211 212 8.967664 TTTTTAAAGCAGTAGAAACTAGGTCA 57.032 30.769 0.00 0.00 33.48 4.02
212 213 8.603242 TTTTAAAGCAGTAGAAACTAGGTCAG 57.397 34.615 0.00 0.00 33.48 3.51
213 214 4.810191 AAGCAGTAGAAACTAGGTCAGG 57.190 45.455 0.00 0.00 33.48 3.86
214 215 4.048970 AGCAGTAGAAACTAGGTCAGGA 57.951 45.455 0.00 0.00 33.48 3.86
215 216 4.417437 AGCAGTAGAAACTAGGTCAGGAA 58.583 43.478 0.00 0.00 33.48 3.36
216 217 4.838986 AGCAGTAGAAACTAGGTCAGGAAA 59.161 41.667 0.00 0.00 33.48 3.13
217 218 5.307196 AGCAGTAGAAACTAGGTCAGGAAAA 59.693 40.000 0.00 0.00 33.48 2.29
218 219 6.013293 AGCAGTAGAAACTAGGTCAGGAAAAT 60.013 38.462 0.00 0.00 33.48 1.82
219 220 6.092807 GCAGTAGAAACTAGGTCAGGAAAATG 59.907 42.308 0.00 0.00 33.48 2.32
220 221 6.595716 CAGTAGAAACTAGGTCAGGAAAATGG 59.404 42.308 0.00 0.00 33.48 3.16
221 222 5.843019 AGAAACTAGGTCAGGAAAATGGA 57.157 39.130 0.00 0.00 0.00 3.41
222 223 6.200878 AGAAACTAGGTCAGGAAAATGGAA 57.799 37.500 0.00 0.00 0.00 3.53
223 224 6.004574 AGAAACTAGGTCAGGAAAATGGAAC 58.995 40.000 0.00 0.00 0.00 3.62
224 225 4.302559 ACTAGGTCAGGAAAATGGAACC 57.697 45.455 0.00 0.00 0.00 3.62
225 226 2.200373 AGGTCAGGAAAATGGAACCG 57.800 50.000 0.00 0.00 0.00 4.44
226 227 1.173913 GGTCAGGAAAATGGAACCGG 58.826 55.000 0.00 0.00 0.00 5.28
227 228 1.173913 GTCAGGAAAATGGAACCGGG 58.826 55.000 6.32 0.00 0.00 5.73
228 229 0.039035 TCAGGAAAATGGAACCGGGG 59.961 55.000 6.32 0.00 0.00 5.73
229 230 0.970427 CAGGAAAATGGAACCGGGGG 60.970 60.000 6.32 0.00 0.00 5.40
230 231 1.143970 AGGAAAATGGAACCGGGGGA 61.144 55.000 6.32 0.00 0.00 4.81
231 232 0.968901 GGAAAATGGAACCGGGGGAC 60.969 60.000 6.32 0.00 0.00 4.46
232 233 0.039180 GAAAATGGAACCGGGGGACT 59.961 55.000 6.32 0.00 0.00 3.85
233 234 1.282738 GAAAATGGAACCGGGGGACTA 59.717 52.381 6.32 0.00 0.00 2.59
234 235 0.916809 AAATGGAACCGGGGGACTAG 59.083 55.000 6.32 0.00 0.00 2.57
235 236 0.986550 AATGGAACCGGGGGACTAGG 60.987 60.000 6.32 0.00 0.00 3.02
236 237 2.040114 GGAACCGGGGGACTAGGT 59.960 66.667 6.32 0.00 41.70 3.08
237 238 2.062777 GGAACCGGGGGACTAGGTC 61.063 68.421 6.32 0.00 39.67 3.85
238 239 2.363406 AACCGGGGGACTAGGTCG 60.363 66.667 6.32 0.00 39.67 4.79
239 240 3.970746 AACCGGGGGACTAGGTCGG 62.971 68.421 6.32 0.00 45.42 4.79
240 241 4.133373 CCGGGGGACTAGGTCGGA 62.133 72.222 0.00 0.00 42.94 4.55
241 242 2.043652 CGGGGGACTAGGTCGGAA 60.044 66.667 0.00 0.00 32.65 4.30
242 243 1.683365 CGGGGGACTAGGTCGGAAA 60.683 63.158 0.00 0.00 32.65 3.13
243 244 1.259840 CGGGGGACTAGGTCGGAAAA 61.260 60.000 0.00 0.00 32.65 2.29
244 245 0.986527 GGGGGACTAGGTCGGAAAAA 59.013 55.000 0.00 0.00 32.65 1.94
262 263 0.614812 AAAAATGCAGCCACCCATCC 59.385 50.000 0.00 0.00 0.00 3.51
263 264 0.544833 AAAATGCAGCCACCCATCCA 60.545 50.000 0.00 0.00 0.00 3.41
264 265 0.325860 AAATGCAGCCACCCATCCAT 60.326 50.000 0.00 0.00 0.00 3.41
265 266 1.046472 AATGCAGCCACCCATCCATG 61.046 55.000 0.00 0.00 0.00 3.66
266 267 2.043652 GCAGCCACCCATCCATGT 60.044 61.111 0.00 0.00 0.00 3.21
267 268 1.227102 GCAGCCACCCATCCATGTA 59.773 57.895 0.00 0.00 0.00 2.29
268 269 1.103398 GCAGCCACCCATCCATGTAC 61.103 60.000 0.00 0.00 0.00 2.90
269 270 0.815213 CAGCCACCCATCCATGTACG 60.815 60.000 0.00 0.00 0.00 3.67
270 271 1.525995 GCCACCCATCCATGTACGG 60.526 63.158 0.00 0.00 0.00 4.02
271 272 1.148273 CCACCCATCCATGTACGGG 59.852 63.158 8.62 8.62 44.88 5.28
276 277 1.034356 CCATCCATGTACGGGTACGA 58.966 55.000 4.67 0.00 44.60 3.43
277 278 1.269413 CCATCCATGTACGGGTACGAC 60.269 57.143 4.67 0.00 44.60 4.34
278 279 1.035139 ATCCATGTACGGGTACGACC 58.965 55.000 4.67 0.00 44.60 4.79
279 280 0.323269 TCCATGTACGGGTACGACCA 60.323 55.000 4.67 0.00 44.60 4.02
280 281 0.531657 CCATGTACGGGTACGACCAA 59.468 55.000 4.67 0.00 44.60 3.67
281 282 1.137479 CCATGTACGGGTACGACCAAT 59.863 52.381 4.67 0.00 44.60 3.16
282 283 2.198406 CATGTACGGGTACGACCAATG 58.802 52.381 4.67 0.00 44.60 2.82
283 284 1.255882 TGTACGGGTACGACCAATGT 58.744 50.000 4.67 4.50 44.60 2.71
284 285 1.067706 TGTACGGGTACGACCAATGTG 60.068 52.381 4.67 0.00 44.60 3.21
285 286 0.531657 TACGGGTACGACCAATGTGG 59.468 55.000 6.41 0.00 44.60 4.17
286 287 1.186917 ACGGGTACGACCAATGTGGA 61.187 55.000 0.18 0.00 40.86 4.02
287 288 0.459585 CGGGTACGACCAATGTGGAG 60.460 60.000 0.18 0.00 40.86 3.86
288 289 0.899720 GGGTACGACCAATGTGGAGA 59.100 55.000 0.18 0.00 40.96 3.71
289 290 1.485066 GGGTACGACCAATGTGGAGAT 59.515 52.381 0.18 0.00 40.96 2.75
290 291 2.483188 GGGTACGACCAATGTGGAGATC 60.483 54.545 0.18 0.00 40.96 2.75
291 292 2.167693 GGTACGACCAATGTGGAGATCA 59.832 50.000 0.18 0.00 40.96 2.92
292 293 3.369052 GGTACGACCAATGTGGAGATCAA 60.369 47.826 0.18 0.00 40.96 2.57
293 294 2.977914 ACGACCAATGTGGAGATCAAG 58.022 47.619 0.18 0.00 40.96 3.02
294 295 1.667724 CGACCAATGTGGAGATCAAGC 59.332 52.381 0.18 0.00 40.96 4.01
295 296 2.019984 GACCAATGTGGAGATCAAGCC 58.980 52.381 0.18 0.00 40.96 4.35
296 297 1.355381 ACCAATGTGGAGATCAAGCCA 59.645 47.619 0.18 0.00 40.96 4.75
300 301 2.755929 GTGGAGATCAAGCCACGAC 58.244 57.895 14.15 0.00 44.39 4.34
301 302 0.741221 GTGGAGATCAAGCCACGACC 60.741 60.000 14.15 0.00 44.39 4.79
302 303 1.519455 GGAGATCAAGCCACGACCG 60.519 63.158 0.00 0.00 0.00 4.79
303 304 2.125512 AGATCAAGCCACGACCGC 60.126 61.111 0.00 0.00 0.00 5.68
304 305 3.554692 GATCAAGCCACGACCGCG 61.555 66.667 0.00 0.00 44.79 6.46
314 315 4.233635 CGACCGCGTACCTCCTCG 62.234 72.222 4.92 0.00 0.00 4.63
315 316 3.130160 GACCGCGTACCTCCTCGT 61.130 66.667 4.92 0.00 0.00 4.18
316 317 3.105852 GACCGCGTACCTCCTCGTC 62.106 68.421 4.92 0.00 0.00 4.20
317 318 4.233635 CCGCGTACCTCCTCGTCG 62.234 72.222 4.92 0.00 0.00 5.12
318 319 4.883300 CGCGTACCTCCTCGTCGC 62.883 72.222 0.00 0.00 42.78 5.19
319 320 4.549516 GCGTACCTCCTCGTCGCC 62.550 72.222 0.00 0.00 40.83 5.54
320 321 3.885521 CGTACCTCCTCGTCGCCC 61.886 72.222 0.00 0.00 0.00 6.13
321 322 3.885521 GTACCTCCTCGTCGCCCG 61.886 72.222 0.00 0.00 38.13 6.13
322 323 4.415150 TACCTCCTCGTCGCCCGT 62.415 66.667 0.00 0.00 37.94 5.28
323 324 3.030168 TACCTCCTCGTCGCCCGTA 62.030 63.158 0.00 0.00 37.94 4.02
324 325 2.329539 TACCTCCTCGTCGCCCGTAT 62.330 60.000 0.00 0.00 37.94 3.06
325 326 2.331805 CTCCTCGTCGCCCGTATG 59.668 66.667 0.00 0.00 37.94 2.39
326 327 3.825833 CTCCTCGTCGCCCGTATGC 62.826 68.421 0.00 0.00 37.94 3.14
327 328 3.900892 CCTCGTCGCCCGTATGCT 61.901 66.667 0.00 0.00 37.94 3.79
328 329 2.655364 CTCGTCGCCCGTATGCTG 60.655 66.667 0.00 0.00 37.94 4.41
329 330 4.865761 TCGTCGCCCGTATGCTGC 62.866 66.667 0.00 0.00 37.94 5.25
331 332 4.530857 GTCGCCCGTATGCTGCCT 62.531 66.667 0.00 0.00 0.00 4.75
332 333 4.529219 TCGCCCGTATGCTGCCTG 62.529 66.667 0.00 0.00 0.00 4.85
346 347 4.999751 GCTGCCTGCATATAAAGTAGAC 57.000 45.455 0.00 0.00 42.31 2.59
347 348 3.748568 GCTGCCTGCATATAAAGTAGACC 59.251 47.826 0.00 0.00 42.31 3.85
348 349 4.319177 CTGCCTGCATATAAAGTAGACCC 58.681 47.826 0.00 0.00 0.00 4.46
349 350 3.244078 TGCCTGCATATAAAGTAGACCCG 60.244 47.826 0.00 0.00 0.00 5.28
350 351 3.864921 GCCTGCATATAAAGTAGACCCGG 60.865 52.174 0.00 0.00 0.00 5.73
351 352 3.576982 CCTGCATATAAAGTAGACCCGGA 59.423 47.826 0.73 0.00 0.00 5.14
352 353 4.039973 CCTGCATATAAAGTAGACCCGGAA 59.960 45.833 0.73 0.00 0.00 4.30
353 354 4.952460 TGCATATAAAGTAGACCCGGAAC 58.048 43.478 0.73 0.00 0.00 3.62
354 355 4.202284 TGCATATAAAGTAGACCCGGAACC 60.202 45.833 0.73 0.00 0.00 3.62
355 356 4.202284 GCATATAAAGTAGACCCGGAACCA 60.202 45.833 0.73 0.00 0.00 3.67
356 357 3.900966 ATAAAGTAGACCCGGAACCAC 57.099 47.619 0.73 0.00 0.00 4.16
357 358 0.319405 AAAGTAGACCCGGAACCACG 59.681 55.000 0.73 0.00 0.00 4.94
530 848 0.106335 CATGGGAAGCGATGCTCTCT 59.894 55.000 0.00 0.00 38.25 3.10
531 849 1.342496 CATGGGAAGCGATGCTCTCTA 59.658 52.381 0.00 0.00 38.25 2.43
546 864 3.630312 GCTCTCTATCGGTCCTATCATCC 59.370 52.174 0.00 0.00 0.00 3.51
586 1599 0.935196 GTGTGTCTGTTTCGTGGACC 59.065 55.000 0.00 0.00 0.00 4.46
597 1610 4.942483 TGTTTCGTGGACCTTAAAGTGAAA 59.058 37.500 0.00 0.00 0.00 2.69
599 1612 3.125316 TCGTGGACCTTAAAGTGAAACG 58.875 45.455 0.00 0.00 45.86 3.60
704 3293 3.581755 CAGTCGATTTTACTGTCCCGAA 58.418 45.455 0.00 0.00 39.61 4.30
744 3351 1.093159 GGTGGCAATTGAGCTCTGAG 58.907 55.000 16.19 0.00 34.17 3.35
775 3382 1.000171 GGAAACCTGAAAAGGCTGCTG 60.000 52.381 0.00 0.00 0.00 4.41
840 3796 1.420138 ACGACCAAAGTGGAGACCAAT 59.580 47.619 0.18 0.00 40.96 3.16
889 3864 5.479306 CCGTATGCTGCATATAAAGTAGGT 58.521 41.667 23.74 0.00 0.00 3.08
972 3978 4.580167 CCAATATCTCCAAAATTCTCCGCA 59.420 41.667 0.00 0.00 0.00 5.69
1054 4067 6.155565 TCCTTCTTGATTAATCGTCCTTGGTA 59.844 38.462 10.80 0.00 0.00 3.25
1062 4075 8.487848 TGATTAATCGTCCTTGGTATTTTCCTA 58.512 33.333 10.80 0.00 0.00 2.94
1066 4079 5.433526 TCGTCCTTGGTATTTTCCTATTGG 58.566 41.667 0.00 0.00 0.00 3.16
1120 4154 3.520290 ATTCGTGCTTAAGATCACCGA 57.480 42.857 6.67 5.41 0.00 4.69
1204 4274 5.676532 TTTTGGTGATATTTCGTGTTCGT 57.323 34.783 0.00 0.00 38.33 3.85
1278 4378 3.123392 TGGGGGTTTCTTGGTCTTTTT 57.877 42.857 0.00 0.00 0.00 1.94
1313 4415 1.268778 GCAACTCGCAAAGTTTCGCC 61.269 55.000 0.00 0.00 46.26 5.54
1314 4416 0.307760 CAACTCGCAAAGTTTCGCCT 59.692 50.000 0.00 0.00 46.26 5.52
1315 4417 1.021968 AACTCGCAAAGTTTCGCCTT 58.978 45.000 0.00 0.00 46.26 4.35
1316 4418 0.307760 ACTCGCAAAGTTTCGCCTTG 59.692 50.000 4.99 0.00 33.03 3.61
1345 4478 2.036992 CGCTCTGCTATTTCCCTCTCAT 59.963 50.000 0.00 0.00 0.00 2.90
1346 4479 3.401182 GCTCTGCTATTTCCCTCTCATG 58.599 50.000 0.00 0.00 0.00 3.07
1347 4480 3.070734 GCTCTGCTATTTCCCTCTCATGA 59.929 47.826 0.00 0.00 0.00 3.07
1348 4481 4.630111 CTCTGCTATTTCCCTCTCATGAC 58.370 47.826 0.00 0.00 0.00 3.06
1349 4482 4.033009 TCTGCTATTTCCCTCTCATGACA 58.967 43.478 0.00 0.00 0.00 3.58
1350 4483 4.125703 CTGCTATTTCCCTCTCATGACAC 58.874 47.826 0.00 0.00 0.00 3.67
1351 4484 3.519107 TGCTATTTCCCTCTCATGACACA 59.481 43.478 0.00 0.00 0.00 3.72
1352 4485 4.019411 TGCTATTTCCCTCTCATGACACAA 60.019 41.667 0.00 0.00 0.00 3.33
1353 4486 4.943705 GCTATTTCCCTCTCATGACACAAA 59.056 41.667 0.00 0.00 0.00 2.83
1354 4487 5.065731 GCTATTTCCCTCTCATGACACAAAG 59.934 44.000 0.00 0.00 0.00 2.77
1355 4488 4.705110 TTTCCCTCTCATGACACAAAGA 57.295 40.909 0.00 0.00 0.00 2.52
1356 4489 4.916041 TTCCCTCTCATGACACAAAGAT 57.084 40.909 0.00 0.00 0.00 2.40
1357 4490 4.916041 TCCCTCTCATGACACAAAGATT 57.084 40.909 0.00 0.00 0.00 2.40
1358 4491 5.246981 TCCCTCTCATGACACAAAGATTT 57.753 39.130 0.00 0.00 0.00 2.17
1359 4492 5.005740 TCCCTCTCATGACACAAAGATTTG 58.994 41.667 3.79 3.79 43.62 2.32
1360 4493 4.157289 CCCTCTCATGACACAAAGATTTGG 59.843 45.833 9.91 2.14 42.34 3.28
1361 4494 4.763793 CCTCTCATGACACAAAGATTTGGT 59.236 41.667 9.91 5.02 42.34 3.67
1362 4495 5.106396 CCTCTCATGACACAAAGATTTGGTC 60.106 44.000 9.91 12.78 42.34 4.02
1363 4496 5.375773 TCTCATGACACAAAGATTTGGTCA 58.624 37.500 21.23 21.23 44.46 4.02
1365 4498 6.149973 TCTCATGACACAAAGATTTGGTCATC 59.850 38.462 24.20 12.54 45.87 2.92
1366 4499 6.005823 TCATGACACAAAGATTTGGTCATCT 58.994 36.000 24.20 13.28 45.87 2.90
1367 4500 6.491062 TCATGACACAAAGATTTGGTCATCTT 59.509 34.615 24.20 12.84 45.87 2.40
1368 4501 6.317789 TGACACAAAGATTTGGTCATCTTC 57.682 37.500 17.89 4.18 41.78 2.87
1369 4502 6.064060 TGACACAAAGATTTGGTCATCTTCT 58.936 36.000 17.89 0.00 41.78 2.85
1370 4503 6.547141 TGACACAAAGATTTGGTCATCTTCTT 59.453 34.615 17.89 0.00 41.78 2.52
1371 4504 6.742109 ACACAAAGATTTGGTCATCTTCTTG 58.258 36.000 9.91 1.05 41.78 3.02
1372 4505 6.322201 ACACAAAGATTTGGTCATCTTCTTGT 59.678 34.615 9.91 1.57 41.78 3.16
1373 4506 7.147846 ACACAAAGATTTGGTCATCTTCTTGTT 60.148 33.333 9.91 0.00 41.78 2.83
1374 4507 7.707893 CACAAAGATTTGGTCATCTTCTTGTTT 59.292 33.333 9.91 0.00 41.78 2.83
1375 4508 8.260114 ACAAAGATTTGGTCATCTTCTTGTTTT 58.740 29.630 9.91 0.00 41.78 2.43
1376 4509 9.101655 CAAAGATTTGGTCATCTTCTTGTTTTT 57.898 29.630 0.00 0.00 41.78 1.94
1395 4528 4.685169 TTTTGTTTCCTGATGATCTCGC 57.315 40.909 0.00 0.00 0.00 5.03
1396 4529 3.616956 TTGTTTCCTGATGATCTCGCT 57.383 42.857 0.00 0.00 0.00 4.93
1397 4530 3.170791 TGTTTCCTGATGATCTCGCTC 57.829 47.619 0.00 0.00 0.00 5.03
1398 4531 2.762887 TGTTTCCTGATGATCTCGCTCT 59.237 45.455 0.00 0.00 0.00 4.09
1399 4532 3.122297 GTTTCCTGATGATCTCGCTCTG 58.878 50.000 0.00 0.00 0.00 3.35
1400 4533 0.672889 TCCTGATGATCTCGCTCTGC 59.327 55.000 0.00 0.00 0.00 4.26
1401 4534 0.675083 CCTGATGATCTCGCTCTGCT 59.325 55.000 0.00 0.00 0.00 4.24
1402 4535 1.885233 CCTGATGATCTCGCTCTGCTA 59.115 52.381 0.00 0.00 0.00 3.49
1403 4536 2.492881 CCTGATGATCTCGCTCTGCTAT 59.507 50.000 0.00 0.00 0.00 2.97
1404 4537 3.056678 CCTGATGATCTCGCTCTGCTATT 60.057 47.826 0.00 0.00 0.00 1.73
1405 4538 4.558178 CTGATGATCTCGCTCTGCTATTT 58.442 43.478 0.00 0.00 0.00 1.40
1406 4539 4.554292 TGATGATCTCGCTCTGCTATTTC 58.446 43.478 0.00 0.00 0.00 2.17
1407 4540 3.377346 TGATCTCGCTCTGCTATTTCC 57.623 47.619 0.00 0.00 0.00 3.13
1408 4541 2.036475 TGATCTCGCTCTGCTATTTCCC 59.964 50.000 0.00 0.00 0.00 3.97
1409 4542 1.781786 TCTCGCTCTGCTATTTCCCT 58.218 50.000 0.00 0.00 0.00 4.20
1410 4543 1.410517 TCTCGCTCTGCTATTTCCCTG 59.589 52.381 0.00 0.00 0.00 4.45
1411 4544 0.179073 TCGCTCTGCTATTTCCCTGC 60.179 55.000 0.00 0.00 0.00 4.85
1412 4545 1.162800 CGCTCTGCTATTTCCCTGCC 61.163 60.000 0.00 0.00 0.00 4.85
1413 4546 0.107017 GCTCTGCTATTTCCCTGCCA 60.107 55.000 0.00 0.00 0.00 4.92
1448 4650 8.027771 AGATTTGATCATCTTCTTGTTTCTTGC 58.972 33.333 0.00 0.00 28.19 4.01
1485 4734 2.877168 CTCTGCTATTTCCCTGTCATGC 59.123 50.000 0.00 0.00 0.00 4.06
1622 5102 3.315142 GACTGTCTCCATGGCGCCA 62.315 63.158 34.80 34.80 0.00 5.69
1623 5103 2.191375 CTGTCTCCATGGCGCCAT 59.809 61.111 36.10 36.10 37.08 4.40
1646 5126 3.612247 CTGTGCCTGCGCCTACCTT 62.612 63.158 4.18 0.00 0.00 3.50
1881 11356 6.362283 CGTCTCTTCTCTTCTTTCTCAAGTTC 59.638 42.308 0.00 0.00 0.00 3.01
1955 11455 2.260869 GGCGTGTGAATGTGCCTGT 61.261 57.895 0.00 0.00 44.16 4.00
1981 11481 7.070696 TCCAAGGATCGAAGATGGATACTTTTA 59.929 37.037 8.10 0.00 41.25 1.52
1988 11489 7.932335 TCGAAGATGGATACTTTTAGAGTCTC 58.068 38.462 0.00 0.00 39.86 3.36
2022 11523 8.876790 GCCGTTTTGTTCAGTTATTACTACTAT 58.123 33.333 0.00 0.00 31.96 2.12
2074 11772 1.351076 TGCCTGTCTGGAGATGTTCA 58.649 50.000 0.00 0.00 38.35 3.18
2093 11791 6.235664 TGTTCATCCTTGGGTAAAAGACTAC 58.764 40.000 0.00 0.00 0.00 2.73
2095 11793 5.098663 TCATCCTTGGGTAAAAGACTACCT 58.901 41.667 0.14 0.00 41.12 3.08
2194 11936 3.246619 CTTCGGAGTTTAGACTGTCTGC 58.753 50.000 20.19 10.06 35.88 4.26
2196 11938 2.626266 TCGGAGTTTAGACTGTCTGCAA 59.374 45.455 20.19 9.95 35.88 4.08
2220 11999 5.304357 AGAACTTGGACGGGATTTGAATTTT 59.696 36.000 0.00 0.00 0.00 1.82
2244 12034 1.133668 AGCTGAAGCCTTGAAGGTTGT 60.134 47.619 13.58 0.00 43.38 3.32
2247 12037 3.507622 GCTGAAGCCTTGAAGGTTGTAAT 59.492 43.478 13.58 0.00 37.80 1.89
2288 12079 5.568685 TTCTCATTCTTGACGAGGTAGAG 57.431 43.478 0.00 0.00 0.00 2.43
2308 12105 6.734104 AGAGTAGTAATTTGCAGCTTCTTG 57.266 37.500 0.00 0.00 0.00 3.02
2320 12136 0.040157 GCTTCTTGTTCATGTGCGCA 60.040 50.000 5.66 5.66 0.00 6.09
2323 12139 3.419915 CTTCTTGTTCATGTGCGCATAC 58.580 45.455 15.91 9.31 33.30 2.39
2354 12170 7.171502 TGTTTGAGCAATCAGCAAACTTCTTC 61.172 38.462 15.77 0.00 46.91 2.87
2364 12180 5.971202 TCAGCAAACTTCTTCGAAATGAAAC 59.029 36.000 0.00 0.00 35.79 2.78
2374 12190 6.907741 TCTTCGAAATGAAACATGTGCAATA 58.092 32.000 0.00 0.00 35.79 1.90
2375 12191 7.537715 TCTTCGAAATGAAACATGTGCAATAT 58.462 30.769 0.00 0.00 35.79 1.28
2403 12222 1.000521 TTGAGGCTTGCTCCCCATG 60.001 57.895 0.00 0.00 0.00 3.66
2409 12228 1.379044 CTTGCTCCCCATGTGGACC 60.379 63.158 0.00 0.00 37.39 4.46
2466 12285 5.511386 AAAGAGGAGGATTCATGACAACT 57.489 39.130 0.00 0.00 0.00 3.16
2467 12286 5.511386 AAGAGGAGGATTCATGACAACTT 57.489 39.130 0.00 0.00 0.00 2.66
2468 12287 5.096443 AGAGGAGGATTCATGACAACTTC 57.904 43.478 0.00 0.00 0.00 3.01
2469 12288 4.533707 AGAGGAGGATTCATGACAACTTCA 59.466 41.667 0.00 0.00 39.11 3.02
2470 12289 5.191323 AGAGGAGGATTCATGACAACTTCAT 59.809 40.000 0.00 0.00 46.75 2.57
2471 12290 5.824421 AGGAGGATTCATGACAACTTCATT 58.176 37.500 0.00 0.00 42.87 2.57
2472 12291 6.251471 AGGAGGATTCATGACAACTTCATTT 58.749 36.000 0.00 0.00 42.87 2.32
2473 12292 7.405292 AGGAGGATTCATGACAACTTCATTTA 58.595 34.615 0.00 0.00 42.87 1.40
2514 12333 4.560856 GCGCCGGTTGCACAAACA 62.561 61.111 14.83 0.00 40.86 2.83
2537 12356 1.834263 AGATTTCCACCCTCCTCTTCG 59.166 52.381 0.00 0.00 0.00 3.79
2538 12357 0.912486 ATTTCCACCCTCCTCTTCGG 59.088 55.000 0.00 0.00 0.00 4.30
2559 12378 2.605366 GGCTCGACACTAGAAAAGCATC 59.395 50.000 0.00 0.00 0.00 3.91
2576 12395 2.821969 GCATCCAACTCAATCAAGTGGT 59.178 45.455 0.00 0.00 0.00 4.16
2590 12409 7.770433 TCAATCAAGTGGTAATACATCCTTGAG 59.230 37.037 17.28 9.67 40.88 3.02
2610 12583 2.899256 AGTTACTACAACGCAAGGGGTA 59.101 45.455 0.00 0.00 46.39 3.69
2635 12609 1.004161 TGCAATTCCCGAGTTGGATCA 59.996 47.619 0.00 0.00 42.00 2.92
2670 12644 0.315251 CATCCTCTTCGCGCATCCTA 59.685 55.000 8.75 0.00 0.00 2.94
2697 12671 2.124570 CTTCCGGGCCACCTGATG 60.125 66.667 4.39 0.00 29.54 3.07
2705 12679 0.394762 GGCCACCTGATGAAGCATGA 60.395 55.000 0.00 0.00 0.00 3.07
2707 12681 1.681166 GCCACCTGATGAAGCATGACT 60.681 52.381 0.00 0.00 0.00 3.41
2732 12728 2.096417 GGTTTCGTCAATGTTCGTCCTG 60.096 50.000 1.76 0.00 0.00 3.86
2733 12729 2.798283 GTTTCGTCAATGTTCGTCCTGA 59.202 45.455 1.76 0.00 0.00 3.86
2741 12737 3.526931 ATGTTCGTCCTGACAATCGAT 57.473 42.857 0.00 0.00 32.54 3.59
2760 12756 3.370953 CGATCCCCTTCAACAAATCCTCT 60.371 47.826 0.00 0.00 0.00 3.69
2805 12802 4.444838 ACAAGATACGCGGGCGCA 62.445 61.111 12.47 0.00 44.19 6.09
2833 12830 5.484644 CCATGATGAGAATCTCCCTCTATGT 59.515 44.000 7.91 0.00 34.92 2.29
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
15 16 2.768527 TGAAGACCACATGGATCTCCTC 59.231 50.000 4.53 1.19 38.94 3.71
16 17 2.837947 TGAAGACCACATGGATCTCCT 58.162 47.619 4.53 0.00 38.94 3.69
17 18 3.495806 GGATGAAGACCACATGGATCTCC 60.496 52.174 4.53 5.70 38.94 3.71
18 19 3.495806 GGGATGAAGACCACATGGATCTC 60.496 52.174 4.53 0.00 38.94 2.75
19 20 2.441001 GGGATGAAGACCACATGGATCT 59.559 50.000 4.53 1.24 38.94 2.75
23 24 0.625316 TGGGGATGAAGACCACATGG 59.375 55.000 0.00 0.00 35.76 3.66
26 27 1.561076 CTCATGGGGATGAAGACCACA 59.439 52.381 0.00 0.00 45.26 4.17
27 28 1.748591 GCTCATGGGGATGAAGACCAC 60.749 57.143 0.00 0.00 37.05 4.16
28 29 0.548031 GCTCATGGGGATGAAGACCA 59.452 55.000 0.00 0.00 38.88 4.02
30 31 1.487976 TCAGCTCATGGGGATGAAGAC 59.512 52.381 0.00 0.00 0.00 3.01
31 32 1.883678 TCAGCTCATGGGGATGAAGA 58.116 50.000 0.00 0.00 0.00 2.87
34 35 2.129363 TGAATCAGCTCATGGGGATGA 58.871 47.619 9.24 9.24 33.62 2.92
36 37 3.156288 CATGAATCAGCTCATGGGGAT 57.844 47.619 5.90 0.00 46.00 3.85
37 38 2.651382 CATGAATCAGCTCATGGGGA 57.349 50.000 5.90 0.00 46.00 4.81
45 46 1.886313 CGGCGAGCATGAATCAGCT 60.886 57.895 0.00 6.86 45.25 4.24
46 47 2.630317 CGGCGAGCATGAATCAGC 59.370 61.111 0.00 2.14 0.00 4.26
48 49 1.521457 GACCGGCGAGCATGAATCA 60.521 57.895 9.30 0.00 0.00 2.57
49 50 2.247437 GGACCGGCGAGCATGAATC 61.247 63.158 9.30 0.00 0.00 2.52
50 51 2.203070 GGACCGGCGAGCATGAAT 60.203 61.111 9.30 0.00 0.00 2.57
52 53 4.147449 CAGGACCGGCGAGCATGA 62.147 66.667 9.30 0.00 0.00 3.07
53 54 4.457496 ACAGGACCGGCGAGCATG 62.457 66.667 9.30 10.38 0.00 4.06
54 55 4.457496 CACAGGACCGGCGAGCAT 62.457 66.667 9.30 0.00 0.00 3.79
56 57 4.681978 AACACAGGACCGGCGAGC 62.682 66.667 9.30 0.00 0.00 5.03
57 58 2.738521 CAACACAGGACCGGCGAG 60.739 66.667 9.30 0.06 0.00 5.03
58 59 4.308458 CCAACACAGGACCGGCGA 62.308 66.667 9.30 0.00 0.00 5.54
61 62 2.976494 AAAGGCCAACACAGGACCGG 62.976 60.000 5.01 0.00 37.41 5.28
62 63 1.515521 GAAAGGCCAACACAGGACCG 61.516 60.000 5.01 0.00 37.41 4.79
64 65 0.178990 AGGAAAGGCCAACACAGGAC 60.179 55.000 5.01 0.00 40.02 3.85
67 68 0.954452 GTCAGGAAAGGCCAACACAG 59.046 55.000 5.01 0.00 40.02 3.66
69 70 0.178990 AGGTCAGGAAAGGCCAACAC 60.179 55.000 5.01 0.00 40.02 3.32
71 72 1.351350 ACTAGGTCAGGAAAGGCCAAC 59.649 52.381 5.01 0.00 40.02 3.77
72 73 1.742308 ACTAGGTCAGGAAAGGCCAA 58.258 50.000 5.01 0.00 40.02 4.52
74 75 2.306219 AGAAACTAGGTCAGGAAAGGCC 59.694 50.000 0.00 0.00 0.00 5.19
76 77 5.586643 GCATAAGAAACTAGGTCAGGAAAGG 59.413 44.000 0.00 0.00 0.00 3.11
77 78 6.314896 CAGCATAAGAAACTAGGTCAGGAAAG 59.685 42.308 0.00 0.00 0.00 2.62
79 80 5.338381 CCAGCATAAGAAACTAGGTCAGGAA 60.338 44.000 0.00 0.00 0.00 3.36
81 82 4.162320 TCCAGCATAAGAAACTAGGTCAGG 59.838 45.833 0.00 0.00 0.00 3.86
82 83 5.344743 TCCAGCATAAGAAACTAGGTCAG 57.655 43.478 0.00 0.00 0.00 3.51
84 85 4.572795 GCTTCCAGCATAAGAAACTAGGTC 59.427 45.833 0.00 0.00 41.89 3.85
85 86 4.226168 AGCTTCCAGCATAAGAAACTAGGT 59.774 41.667 0.00 0.00 45.56 3.08
89 90 6.317391 GTGATAAGCTTCCAGCATAAGAAACT 59.683 38.462 0.00 0.00 45.56 2.66
90 91 6.490534 GTGATAAGCTTCCAGCATAAGAAAC 58.509 40.000 0.00 0.00 45.56 2.78
92 93 4.811024 CGTGATAAGCTTCCAGCATAAGAA 59.189 41.667 0.00 0.00 45.56 2.52
93 94 4.141937 ACGTGATAAGCTTCCAGCATAAGA 60.142 41.667 0.00 0.00 45.56 2.10
94 95 4.122776 ACGTGATAAGCTTCCAGCATAAG 58.877 43.478 0.00 0.00 45.56 1.73
95 96 4.137116 ACGTGATAAGCTTCCAGCATAA 57.863 40.909 0.00 0.00 45.56 1.90
97 98 2.698855 ACGTGATAAGCTTCCAGCAT 57.301 45.000 0.00 0.00 45.56 3.79
98 99 2.472695 AACGTGATAAGCTTCCAGCA 57.527 45.000 0.00 0.00 45.56 4.41
99 100 4.939509 TTTAACGTGATAAGCTTCCAGC 57.060 40.909 0.00 0.00 42.84 4.85
100 101 6.899114 AGTTTTTAACGTGATAAGCTTCCAG 58.101 36.000 0.00 0.15 36.23 3.86
101 102 6.870971 AGTTTTTAACGTGATAAGCTTCCA 57.129 33.333 0.00 0.00 36.23 3.53
102 103 9.836076 ATAAAGTTTTTAACGTGATAAGCTTCC 57.164 29.630 0.00 0.00 36.23 3.46
128 129 9.537192 ACATAGCGCTAAAAGTATTACAACATA 57.463 29.630 22.98 0.00 0.00 2.29
129 130 8.433421 ACATAGCGCTAAAAGTATTACAACAT 57.567 30.769 22.98 0.00 0.00 2.71
130 131 7.837202 ACATAGCGCTAAAAGTATTACAACA 57.163 32.000 22.98 0.00 0.00 3.33
131 132 8.385111 TCAACATAGCGCTAAAAGTATTACAAC 58.615 33.333 22.98 0.00 0.00 3.32
132 133 8.481974 TCAACATAGCGCTAAAAGTATTACAA 57.518 30.769 22.98 0.00 0.00 2.41
133 134 8.385111 GTTCAACATAGCGCTAAAAGTATTACA 58.615 33.333 22.98 0.00 0.00 2.41
134 135 7.849515 GGTTCAACATAGCGCTAAAAGTATTAC 59.150 37.037 22.98 15.87 0.00 1.89
135 136 7.767198 AGGTTCAACATAGCGCTAAAAGTATTA 59.233 33.333 22.98 0.00 0.00 0.98
136 137 6.598064 AGGTTCAACATAGCGCTAAAAGTATT 59.402 34.615 22.98 6.78 0.00 1.89
137 138 6.037172 CAGGTTCAACATAGCGCTAAAAGTAT 59.963 38.462 22.98 0.85 0.00 2.12
138 139 5.350365 CAGGTTCAACATAGCGCTAAAAGTA 59.650 40.000 22.98 0.00 0.00 2.24
139 140 4.154195 CAGGTTCAACATAGCGCTAAAAGT 59.846 41.667 22.98 17.01 0.00 2.66
140 141 4.437390 CCAGGTTCAACATAGCGCTAAAAG 60.437 45.833 22.98 16.35 0.00 2.27
141 142 3.438781 CCAGGTTCAACATAGCGCTAAAA 59.561 43.478 22.98 0.00 0.00 1.52
142 143 3.006940 CCAGGTTCAACATAGCGCTAAA 58.993 45.455 22.98 7.88 0.00 1.85
143 144 2.627945 CCAGGTTCAACATAGCGCTAA 58.372 47.619 22.98 1.88 0.00 3.09
144 145 1.134521 CCCAGGTTCAACATAGCGCTA 60.135 52.381 21.30 21.30 0.00 4.26
145 146 0.392998 CCCAGGTTCAACATAGCGCT 60.393 55.000 17.26 17.26 0.00 5.92
146 147 0.676782 ACCCAGGTTCAACATAGCGC 60.677 55.000 0.00 0.00 0.00 5.92
147 148 1.821216 AACCCAGGTTCAACATAGCG 58.179 50.000 0.00 0.00 32.09 4.26
148 149 3.694566 CCTAAACCCAGGTTCAACATAGC 59.305 47.826 1.78 0.00 37.35 2.97
149 150 3.694566 GCCTAAACCCAGGTTCAACATAG 59.305 47.826 1.78 0.81 37.35 2.23
150 151 3.562609 GGCCTAAACCCAGGTTCAACATA 60.563 47.826 1.78 0.00 37.35 2.29
151 152 2.525368 GCCTAAACCCAGGTTCAACAT 58.475 47.619 1.78 0.00 37.35 2.71
152 153 1.479757 GGCCTAAACCCAGGTTCAACA 60.480 52.381 1.78 0.00 37.35 3.33
153 154 1.254026 GGCCTAAACCCAGGTTCAAC 58.746 55.000 1.78 0.00 37.35 3.18
154 155 0.854218 TGGCCTAAACCCAGGTTCAA 59.146 50.000 3.32 0.00 37.35 2.69
155 156 0.404040 CTGGCCTAAACCCAGGTTCA 59.596 55.000 3.32 0.00 44.87 3.18
156 157 3.266240 CTGGCCTAAACCCAGGTTC 57.734 57.895 3.32 0.00 44.87 3.62
161 162 1.760613 CGATCTACTGGCCTAAACCCA 59.239 52.381 3.32 0.00 0.00 4.51
162 163 1.761198 ACGATCTACTGGCCTAAACCC 59.239 52.381 3.32 0.00 0.00 4.11
163 164 3.538634 AACGATCTACTGGCCTAAACC 57.461 47.619 3.32 0.00 0.00 3.27
164 165 5.874895 AAAAACGATCTACTGGCCTAAAC 57.125 39.130 3.32 0.00 0.00 2.01
186 187 8.967664 TGACCTAGTTTCTACTGCTTTAAAAA 57.032 30.769 0.00 0.00 35.78 1.94
187 188 7.660208 CCTGACCTAGTTTCTACTGCTTTAAAA 59.340 37.037 0.00 0.00 35.78 1.52
188 189 7.015877 TCCTGACCTAGTTTCTACTGCTTTAAA 59.984 37.037 0.00 0.00 35.78 1.52
189 190 6.495872 TCCTGACCTAGTTTCTACTGCTTTAA 59.504 38.462 0.00 0.00 35.78 1.52
190 191 6.014647 TCCTGACCTAGTTTCTACTGCTTTA 58.985 40.000 0.00 0.00 35.78 1.85
191 192 4.838986 TCCTGACCTAGTTTCTACTGCTTT 59.161 41.667 0.00 0.00 35.78 3.51
192 193 4.417437 TCCTGACCTAGTTTCTACTGCTT 58.583 43.478 0.00 0.00 35.78 3.91
193 194 4.048970 TCCTGACCTAGTTTCTACTGCT 57.951 45.455 0.00 0.00 35.78 4.24
194 195 4.803098 TTCCTGACCTAGTTTCTACTGC 57.197 45.455 0.00 0.00 35.78 4.40
195 196 6.595716 CCATTTTCCTGACCTAGTTTCTACTG 59.404 42.308 0.00 0.00 35.78 2.74
196 197 6.500751 TCCATTTTCCTGACCTAGTTTCTACT 59.499 38.462 0.00 0.00 38.44 2.57
197 198 6.708285 TCCATTTTCCTGACCTAGTTTCTAC 58.292 40.000 0.00 0.00 0.00 2.59
198 199 6.945636 TCCATTTTCCTGACCTAGTTTCTA 57.054 37.500 0.00 0.00 0.00 2.10
199 200 5.843019 TCCATTTTCCTGACCTAGTTTCT 57.157 39.130 0.00 0.00 0.00 2.52
200 201 5.183331 GGTTCCATTTTCCTGACCTAGTTTC 59.817 44.000 0.00 0.00 0.00 2.78
201 202 5.077564 GGTTCCATTTTCCTGACCTAGTTT 58.922 41.667 0.00 0.00 0.00 2.66
202 203 4.663334 GGTTCCATTTTCCTGACCTAGTT 58.337 43.478 0.00 0.00 0.00 2.24
203 204 3.307480 CGGTTCCATTTTCCTGACCTAGT 60.307 47.826 0.00 0.00 0.00 2.57
204 205 3.270877 CGGTTCCATTTTCCTGACCTAG 58.729 50.000 0.00 0.00 0.00 3.02
205 206 2.026636 CCGGTTCCATTTTCCTGACCTA 60.027 50.000 0.00 0.00 0.00 3.08
206 207 1.271926 CCGGTTCCATTTTCCTGACCT 60.272 52.381 0.00 0.00 0.00 3.85
207 208 1.173913 CCGGTTCCATTTTCCTGACC 58.826 55.000 0.00 0.00 0.00 4.02
208 209 1.173913 CCCGGTTCCATTTTCCTGAC 58.826 55.000 0.00 0.00 0.00 3.51
209 210 0.039035 CCCCGGTTCCATTTTCCTGA 59.961 55.000 0.00 0.00 0.00 3.86
210 211 0.970427 CCCCCGGTTCCATTTTCCTG 60.970 60.000 0.00 0.00 0.00 3.86
211 212 1.143970 TCCCCCGGTTCCATTTTCCT 61.144 55.000 0.00 0.00 0.00 3.36
212 213 0.968901 GTCCCCCGGTTCCATTTTCC 60.969 60.000 0.00 0.00 0.00 3.13
213 214 0.039180 AGTCCCCCGGTTCCATTTTC 59.961 55.000 0.00 0.00 0.00 2.29
214 215 1.283905 CTAGTCCCCCGGTTCCATTTT 59.716 52.381 0.00 0.00 0.00 1.82
215 216 0.916809 CTAGTCCCCCGGTTCCATTT 59.083 55.000 0.00 0.00 0.00 2.32
216 217 0.986550 CCTAGTCCCCCGGTTCCATT 60.987 60.000 0.00 0.00 0.00 3.16
217 218 1.384082 CCTAGTCCCCCGGTTCCAT 60.384 63.158 0.00 0.00 0.00 3.41
218 219 2.039951 CCTAGTCCCCCGGTTCCA 59.960 66.667 0.00 0.00 0.00 3.53
219 220 2.040114 ACCTAGTCCCCCGGTTCC 59.960 66.667 0.00 0.00 0.00 3.62
220 221 2.421399 CGACCTAGTCCCCCGGTTC 61.421 68.421 0.00 0.00 0.00 3.62
221 222 2.363406 CGACCTAGTCCCCCGGTT 60.363 66.667 0.00 0.00 0.00 4.44
222 223 4.453892 CCGACCTAGTCCCCCGGT 62.454 72.222 0.00 0.00 35.83 5.28
223 224 3.667217 TTCCGACCTAGTCCCCCGG 62.667 68.421 0.00 0.00 41.36 5.73
224 225 1.259840 TTTTCCGACCTAGTCCCCCG 61.260 60.000 0.00 0.00 0.00 5.73
225 226 0.986527 TTTTTCCGACCTAGTCCCCC 59.013 55.000 0.00 0.00 0.00 5.40
243 244 0.614812 GGATGGGTGGCTGCATTTTT 59.385 50.000 0.50 0.00 0.00 1.94
244 245 0.544833 TGGATGGGTGGCTGCATTTT 60.545 50.000 0.50 0.00 0.00 1.82
245 246 0.325860 ATGGATGGGTGGCTGCATTT 60.326 50.000 0.50 0.00 0.00 2.32
246 247 1.046472 CATGGATGGGTGGCTGCATT 61.046 55.000 0.50 0.00 0.00 3.56
247 248 1.456892 CATGGATGGGTGGCTGCAT 60.457 57.895 0.50 0.00 0.00 3.96
248 249 1.569943 TACATGGATGGGTGGCTGCA 61.570 55.000 0.50 0.00 0.00 4.41
249 250 1.103398 GTACATGGATGGGTGGCTGC 61.103 60.000 0.00 0.00 0.00 5.25
250 251 0.815213 CGTACATGGATGGGTGGCTG 60.815 60.000 0.00 0.00 0.00 4.85
251 252 1.526887 CGTACATGGATGGGTGGCT 59.473 57.895 0.00 0.00 0.00 4.75
252 253 1.525995 CCGTACATGGATGGGTGGC 60.526 63.158 8.51 0.00 0.00 5.01
253 254 1.148273 CCCGTACATGGATGGGTGG 59.852 63.158 25.68 1.66 40.41 4.61
254 255 4.876701 CCCGTACATGGATGGGTG 57.123 61.111 25.68 2.43 40.41 4.61
257 258 1.034356 TCGTACCCGTACATGGATGG 58.966 55.000 9.51 9.51 35.87 3.51
258 259 1.269413 GGTCGTACCCGTACATGGATG 60.269 57.143 5.47 0.00 35.87 3.51
259 260 1.035139 GGTCGTACCCGTACATGGAT 58.965 55.000 5.47 0.00 35.87 3.41
260 261 0.323269 TGGTCGTACCCGTACATGGA 60.323 55.000 5.47 0.00 37.50 3.41
261 262 0.531657 TTGGTCGTACCCGTACATGG 59.468 55.000 0.00 0.00 37.50 3.66
262 263 2.198406 CATTGGTCGTACCCGTACATG 58.802 52.381 5.88 0.00 37.50 3.21
263 264 1.826720 ACATTGGTCGTACCCGTACAT 59.173 47.619 5.88 0.00 37.50 2.29
264 265 1.067706 CACATTGGTCGTACCCGTACA 60.068 52.381 5.88 0.00 37.50 2.90
265 266 1.632422 CACATTGGTCGTACCCGTAC 58.368 55.000 2.23 0.00 37.50 3.67
266 267 0.531657 CCACATTGGTCGTACCCGTA 59.468 55.000 2.23 0.00 37.50 4.02
267 268 1.186917 TCCACATTGGTCGTACCCGT 61.187 55.000 2.23 0.00 39.03 5.28
268 269 0.459585 CTCCACATTGGTCGTACCCG 60.460 60.000 2.23 0.00 39.03 5.28
269 270 0.899720 TCTCCACATTGGTCGTACCC 59.100 55.000 2.23 0.00 39.03 3.69
270 271 2.167693 TGATCTCCACATTGGTCGTACC 59.832 50.000 0.00 0.00 39.03 3.34
271 272 3.520290 TGATCTCCACATTGGTCGTAC 57.480 47.619 0.00 0.00 39.03 3.67
272 273 3.678806 GCTTGATCTCCACATTGGTCGTA 60.679 47.826 0.00 0.00 39.03 3.43
273 274 2.936993 GCTTGATCTCCACATTGGTCGT 60.937 50.000 0.00 0.00 39.03 4.34
274 275 1.667724 GCTTGATCTCCACATTGGTCG 59.332 52.381 0.00 0.00 39.03 4.79
275 276 2.019984 GGCTTGATCTCCACATTGGTC 58.980 52.381 0.00 0.00 39.03 4.02
276 277 1.355381 TGGCTTGATCTCCACATTGGT 59.645 47.619 0.00 0.00 39.03 3.67
277 278 2.133281 TGGCTTGATCTCCACATTGG 57.867 50.000 0.00 0.00 39.43 3.16
282 283 0.741221 GGTCGTGGCTTGATCTCCAC 60.741 60.000 17.02 17.02 46.95 4.02
283 284 1.596934 GGTCGTGGCTTGATCTCCA 59.403 57.895 0.00 0.00 0.00 3.86
284 285 1.519455 CGGTCGTGGCTTGATCTCC 60.519 63.158 0.00 0.00 0.00 3.71
285 286 2.167861 GCGGTCGTGGCTTGATCTC 61.168 63.158 0.00 0.00 0.00 2.75
286 287 2.125512 GCGGTCGTGGCTTGATCT 60.126 61.111 0.00 0.00 0.00 2.75
287 288 3.554692 CGCGGTCGTGGCTTGATC 61.555 66.667 0.00 0.00 0.00 2.92
297 298 4.233635 CGAGGAGGTACGCGGTCG 62.234 72.222 12.47 3.07 42.43 4.79
298 299 3.105852 GACGAGGAGGTACGCGGTC 62.106 68.421 12.47 2.10 0.00 4.79
299 300 3.130160 GACGAGGAGGTACGCGGT 61.130 66.667 12.47 0.00 0.00 5.68
300 301 4.233635 CGACGAGGAGGTACGCGG 62.234 72.222 12.47 0.00 0.00 6.46
301 302 4.883300 GCGACGAGGAGGTACGCG 62.883 72.222 3.53 3.53 39.90 6.01
302 303 4.549516 GGCGACGAGGAGGTACGC 62.550 72.222 0.00 0.00 46.79 4.42
303 304 3.885521 GGGCGACGAGGAGGTACG 61.886 72.222 0.00 0.00 0.00 3.67
314 315 4.530857 AGGCAGCATACGGGCGAC 62.531 66.667 0.00 0.00 41.51 5.19
315 316 4.529219 CAGGCAGCATACGGGCGA 62.529 66.667 0.00 0.00 41.51 5.54
325 326 3.748568 GGTCTACTTTATATGCAGGCAGC 59.251 47.826 0.00 0.00 45.96 5.25
326 327 4.319177 GGGTCTACTTTATATGCAGGCAG 58.681 47.826 0.00 0.00 0.00 4.85
327 328 3.244078 CGGGTCTACTTTATATGCAGGCA 60.244 47.826 0.00 0.00 0.00 4.75
328 329 3.326747 CGGGTCTACTTTATATGCAGGC 58.673 50.000 0.00 0.00 0.00 4.85
329 330 3.576982 TCCGGGTCTACTTTATATGCAGG 59.423 47.826 0.00 0.00 0.00 4.85
330 331 4.866508 TCCGGGTCTACTTTATATGCAG 57.133 45.455 0.00 0.00 0.00 4.41
331 332 4.202284 GGTTCCGGGTCTACTTTATATGCA 60.202 45.833 0.00 0.00 0.00 3.96
332 333 4.202284 TGGTTCCGGGTCTACTTTATATGC 60.202 45.833 0.00 0.00 0.00 3.14
333 334 5.295152 GTGGTTCCGGGTCTACTTTATATG 58.705 45.833 0.00 0.00 0.00 1.78
334 335 4.038402 CGTGGTTCCGGGTCTACTTTATAT 59.962 45.833 0.00 0.00 0.00 0.86
335 336 3.381272 CGTGGTTCCGGGTCTACTTTATA 59.619 47.826 0.00 0.00 0.00 0.98
336 337 2.167075 CGTGGTTCCGGGTCTACTTTAT 59.833 50.000 0.00 0.00 0.00 1.40
337 338 1.545582 CGTGGTTCCGGGTCTACTTTA 59.454 52.381 0.00 0.00 0.00 1.85
338 339 0.319405 CGTGGTTCCGGGTCTACTTT 59.681 55.000 0.00 0.00 0.00 2.66
339 340 1.538687 CCGTGGTTCCGGGTCTACTT 61.539 60.000 0.00 0.00 44.32 2.24
340 341 1.980772 CCGTGGTTCCGGGTCTACT 60.981 63.158 0.00 0.00 44.32 2.57
341 342 2.575461 CCGTGGTTCCGGGTCTAC 59.425 66.667 0.00 2.27 44.32 2.59
348 349 3.338126 CTCCGTCTCCGTGGTTCCG 62.338 68.421 0.00 0.00 0.00 4.30
349 350 2.572284 CTCCGTCTCCGTGGTTCC 59.428 66.667 0.00 0.00 0.00 3.62
350 351 2.126031 GCTCCGTCTCCGTGGTTC 60.126 66.667 0.00 0.00 0.00 3.62
351 352 2.227089 GATGCTCCGTCTCCGTGGTT 62.227 60.000 0.00 0.00 0.00 3.67
352 353 2.680352 ATGCTCCGTCTCCGTGGT 60.680 61.111 0.00 0.00 0.00 4.16
353 354 2.105128 GATGCTCCGTCTCCGTGG 59.895 66.667 0.00 0.00 0.00 4.94
354 355 1.064946 GAGATGCTCCGTCTCCGTG 59.935 63.158 3.60 0.00 39.75 4.94
355 356 3.515611 GAGATGCTCCGTCTCCGT 58.484 61.111 3.60 0.00 39.75 4.69
366 367 1.096386 CCAGCAAGCAGAGGAGATGC 61.096 60.000 0.00 0.00 44.18 3.91
367 368 1.096386 GCCAGCAAGCAGAGGAGATG 61.096 60.000 0.00 0.00 0.00 2.90
368 369 1.224039 GCCAGCAAGCAGAGGAGAT 59.776 57.895 0.00 0.00 0.00 2.75
369 370 2.667418 GCCAGCAAGCAGAGGAGA 59.333 61.111 0.00 0.00 0.00 3.71
394 395 1.131883 CGTGTAGCTACTGCCTACGTT 59.868 52.381 23.84 0.00 40.80 3.99
397 398 3.712091 AATCGTGTAGCTACTGCCTAC 57.288 47.619 23.84 12.52 40.80 3.18
405 406 2.100916 GGAGAGGCAAATCGTGTAGCTA 59.899 50.000 0.00 0.00 0.00 3.32
513 517 1.615883 GATAGAGAGCATCGCTTCCCA 59.384 52.381 0.00 0.00 45.29 4.37
517 521 1.268352 GACCGATAGAGAGCATCGCTT 59.732 52.381 0.00 0.00 45.29 4.68
524 528 3.630312 GGATGATAGGACCGATAGAGAGC 59.370 52.174 0.00 0.00 39.76 4.09
546 864 7.643764 ACACACTGATTTGAAATAGTTTGAACG 59.356 33.333 14.58 0.00 0.00 3.95
586 1599 7.406799 AAAAATGCCATCGTTTCACTTTAAG 57.593 32.000 0.00 0.00 31.42 1.85
623 2049 2.506472 GATCCGCACTTCCTCCCC 59.494 66.667 0.00 0.00 0.00 4.81
624 2050 2.107141 CGATCCGCACTTCCTCCC 59.893 66.667 0.00 0.00 0.00 4.30
625 2051 1.227002 GACGATCCGCACTTCCTCC 60.227 63.158 0.00 0.00 0.00 4.30
704 3293 7.685398 GCCACCTCTTTCTTTTCTCATTTCTTT 60.685 37.037 0.00 0.00 0.00 2.52
744 3351 6.870439 CCTTTTCAGGTTTCCATTTCTTCATC 59.130 38.462 0.00 0.00 35.06 2.92
856 3812 1.001760 AGCATACGGGTGAGGAGGT 59.998 57.895 0.00 0.00 0.00 3.85
897 3884 1.195900 TCTGTAACGAAATTGCCGTGC 59.804 47.619 6.87 4.84 40.44 5.34
972 3978 1.202818 GCACCACTCTTTTCCCTGACT 60.203 52.381 0.00 0.00 0.00 3.41
1054 4067 9.582648 ACAACAAACTACTACCAATAGGAAAAT 57.417 29.630 0.00 0.00 38.69 1.82
1062 4075 5.238650 GTCAGCACAACAAACTACTACCAAT 59.761 40.000 0.00 0.00 0.00 3.16
1066 4079 7.599245 AGAATAGTCAGCACAACAAACTACTAC 59.401 37.037 0.00 0.00 0.00 2.73
1150 4219 5.381757 AGATTGCTCTACTACGAGGAAGAT 58.618 41.667 0.00 0.00 43.14 2.40
1192 4262 6.533819 TTTGAACTGATACGAACACGAAAT 57.466 33.333 0.00 0.00 0.00 2.17
1195 4265 5.045215 AGTTTTGAACTGATACGAACACGA 58.955 37.500 0.00 0.00 41.01 4.35
1278 4378 4.354162 GCCACTACCCGGGCCAAA 62.354 66.667 24.08 2.26 44.53 3.28
1313 4415 2.512485 AGCAGAGCGAGATCATCAAG 57.488 50.000 0.00 0.00 0.00 3.02
1314 4416 4.597404 AATAGCAGAGCGAGATCATCAA 57.403 40.909 0.00 0.00 0.00 2.57
1315 4417 4.554292 GAAATAGCAGAGCGAGATCATCA 58.446 43.478 0.00 0.00 0.00 3.07
1316 4418 3.925913 GGAAATAGCAGAGCGAGATCATC 59.074 47.826 0.00 0.00 0.00 2.92
1345 4478 6.064060 AGAAGATGACCAAATCTTTGTGTCA 58.936 36.000 19.69 19.69 44.96 3.58
1346 4479 6.566197 AGAAGATGACCAAATCTTTGTGTC 57.434 37.500 13.08 13.08 44.96 3.67
1347 4480 6.322201 ACAAGAAGATGACCAAATCTTTGTGT 59.678 34.615 1.28 5.97 44.96 3.72
1348 4481 6.742109 ACAAGAAGATGACCAAATCTTTGTG 58.258 36.000 1.28 5.46 44.96 3.33
1349 4482 6.966534 ACAAGAAGATGACCAAATCTTTGT 57.033 33.333 1.28 0.88 44.96 2.83
1350 4483 8.652810 AAAACAAGAAGATGACCAAATCTTTG 57.347 30.769 1.28 0.00 44.96 2.77
1373 4506 4.761739 AGCGAGATCATCAGGAAACAAAAA 59.238 37.500 0.00 0.00 0.00 1.94
1374 4507 4.326826 AGCGAGATCATCAGGAAACAAAA 58.673 39.130 0.00 0.00 0.00 2.44
1375 4508 3.935203 GAGCGAGATCATCAGGAAACAAA 59.065 43.478 0.00 0.00 0.00 2.83
1376 4509 3.196469 AGAGCGAGATCATCAGGAAACAA 59.804 43.478 0.00 0.00 0.00 2.83
1377 4510 2.762887 AGAGCGAGATCATCAGGAAACA 59.237 45.455 0.00 0.00 0.00 2.83
1378 4511 3.122297 CAGAGCGAGATCATCAGGAAAC 58.878 50.000 0.00 0.00 0.00 2.78
1379 4512 2.482664 GCAGAGCGAGATCATCAGGAAA 60.483 50.000 0.00 0.00 0.00 3.13
1380 4513 1.068281 GCAGAGCGAGATCATCAGGAA 59.932 52.381 0.00 0.00 0.00 3.36
1381 4514 0.672889 GCAGAGCGAGATCATCAGGA 59.327 55.000 0.00 0.00 0.00 3.86
1382 4515 0.675083 AGCAGAGCGAGATCATCAGG 59.325 55.000 0.00 0.00 0.00 3.86
1383 4516 3.853831 ATAGCAGAGCGAGATCATCAG 57.146 47.619 0.00 0.00 0.00 2.90
1384 4517 4.554292 GAAATAGCAGAGCGAGATCATCA 58.446 43.478 0.00 0.00 0.00 3.07
1385 4518 3.925913 GGAAATAGCAGAGCGAGATCATC 59.074 47.826 0.00 0.00 0.00 2.92
1386 4519 3.306641 GGGAAATAGCAGAGCGAGATCAT 60.307 47.826 0.00 0.00 0.00 2.45
1387 4520 2.036475 GGGAAATAGCAGAGCGAGATCA 59.964 50.000 0.00 0.00 0.00 2.92
1388 4521 2.298729 AGGGAAATAGCAGAGCGAGATC 59.701 50.000 0.00 0.00 0.00 2.75
1389 4522 2.036992 CAGGGAAATAGCAGAGCGAGAT 59.963 50.000 0.00 0.00 0.00 2.75
1390 4523 1.410517 CAGGGAAATAGCAGAGCGAGA 59.589 52.381 0.00 0.00 0.00 4.04
1391 4524 1.863267 CAGGGAAATAGCAGAGCGAG 58.137 55.000 0.00 0.00 0.00 5.03
1392 4525 0.179073 GCAGGGAAATAGCAGAGCGA 60.179 55.000 0.00 0.00 0.00 4.93
1393 4526 1.162800 GGCAGGGAAATAGCAGAGCG 61.163 60.000 0.00 0.00 0.00 5.03
1394 4527 0.107017 TGGCAGGGAAATAGCAGAGC 60.107 55.000 0.00 0.00 0.00 4.09
1395 4528 2.228059 CATGGCAGGGAAATAGCAGAG 58.772 52.381 0.00 0.00 0.00 3.35
1396 4529 1.565759 ACATGGCAGGGAAATAGCAGA 59.434 47.619 3.46 0.00 0.00 4.26
1397 4530 1.952296 GACATGGCAGGGAAATAGCAG 59.048 52.381 3.46 0.00 0.00 4.24
1398 4531 1.284491 TGACATGGCAGGGAAATAGCA 59.716 47.619 0.00 0.00 0.00 3.49
1399 4532 1.678101 GTGACATGGCAGGGAAATAGC 59.322 52.381 0.00 0.00 0.00 2.97
1400 4533 3.003394 TGTGACATGGCAGGGAAATAG 57.997 47.619 0.00 0.00 0.00 1.73
1401 4534 3.448093 TTGTGACATGGCAGGGAAATA 57.552 42.857 0.00 0.00 0.00 1.40
1402 4535 2.307496 TTGTGACATGGCAGGGAAAT 57.693 45.000 0.00 0.00 0.00 2.17
1403 4536 1.962807 CTTTGTGACATGGCAGGGAAA 59.037 47.619 0.00 0.38 0.00 3.13
1404 4537 1.144708 TCTTTGTGACATGGCAGGGAA 59.855 47.619 0.00 0.00 0.00 3.97
1405 4538 0.770499 TCTTTGTGACATGGCAGGGA 59.230 50.000 0.00 0.00 0.00 4.20
1406 4539 1.843368 ATCTTTGTGACATGGCAGGG 58.157 50.000 0.00 0.00 0.00 4.45
1407 4540 3.256383 TCAAATCTTTGTGACATGGCAGG 59.744 43.478 0.00 0.00 39.18 4.85
1408 4541 4.508461 TCAAATCTTTGTGACATGGCAG 57.492 40.909 0.00 0.00 39.18 4.85
1409 4542 4.523558 TGATCAAATCTTTGTGACATGGCA 59.476 37.500 0.00 0.00 39.18 4.92
1410 4543 5.063180 TGATCAAATCTTTGTGACATGGC 57.937 39.130 0.00 0.00 39.18 4.40
1411 4544 7.096884 AGATGATCAAATCTTTGTGACATGG 57.903 36.000 0.00 0.00 39.18 3.66
1412 4545 8.459635 AGAAGATGATCAAATCTTTGTGACATG 58.540 33.333 11.86 0.00 44.96 3.21
1413 4546 8.577048 AGAAGATGATCAAATCTTTGTGACAT 57.423 30.769 11.86 6.98 44.96 3.06
1448 4650 2.796031 GCAGAGCGAGATCATCAAGAAG 59.204 50.000 0.00 0.00 0.00 2.85
1485 4734 6.561614 CAAGAAGATGATCAAATCTTGGTGG 58.438 40.000 25.73 11.63 44.96 4.61
1518 4838 0.605319 TCGCGGGCTTCAAAGTTGAT 60.605 50.000 6.13 0.00 37.00 2.57
1593 5064 2.799916 GACAGTCGACGCCGTGAC 60.800 66.667 10.46 2.79 37.05 3.67
1622 5102 2.509336 GCGCAGGCACAGTCGTAT 60.509 61.111 0.30 0.00 39.62 3.06
1881 11356 4.496927 GCGCCCAAATCAAGCCGG 62.497 66.667 0.00 0.00 0.00 6.13
1945 11445 1.679944 CGATCCTTGGACAGGCACATT 60.680 52.381 0.00 0.00 43.55 2.71
1955 11455 4.483950 AGTATCCATCTTCGATCCTTGGA 58.516 43.478 8.71 8.71 40.54 3.53
1981 11481 1.140589 CGGCGCATCTTGAGACTCT 59.859 57.895 10.83 0.00 0.00 3.24
1988 11489 1.052287 GAACAAAACGGCGCATCTTG 58.948 50.000 10.83 9.41 0.00 3.02
2022 11523 8.604640 TTGAAACTAAAACACCATACGACATA 57.395 30.769 0.00 0.00 0.00 2.29
2074 11772 6.464530 AAAGGTAGTCTTTTACCCAAGGAT 57.535 37.500 0.00 0.00 42.62 3.24
2194 11936 3.146066 TCAAATCCCGTCCAAGTTCTTG 58.854 45.455 5.66 5.66 0.00 3.02
2196 11938 3.502123 TTCAAATCCCGTCCAAGTTCT 57.498 42.857 0.00 0.00 0.00 3.01
2220 11999 3.832527 ACCTTCAAGGCTTCAGCTAAAA 58.167 40.909 2.20 0.00 39.63 1.52
2244 12034 6.375174 AGAAATGCTGCTCACATAACACATTA 59.625 34.615 0.00 0.00 0.00 1.90
2247 12037 4.074259 AGAAATGCTGCTCACATAACACA 58.926 39.130 0.00 0.00 0.00 3.72
2288 12079 6.668323 TGAACAAGAAGCTGCAAATTACTAC 58.332 36.000 1.02 0.00 0.00 2.73
2320 12136 3.486263 GCTCAAACAGCGGCGTAT 58.514 55.556 9.37 0.00 38.76 3.06
2347 12163 5.215160 GCACATGTTTCATTTCGAAGAAGT 58.785 37.500 0.00 0.00 45.90 3.01
2403 12222 1.469335 TTGGAGACGAGTGGGTCCAC 61.469 60.000 11.94 11.94 46.50 4.02
2470 12289 8.317460 GCGAAATTGCGAACATAAATGAATAAA 58.683 29.630 10.87 0.00 0.00 1.40
2471 12290 7.826636 GCGAAATTGCGAACATAAATGAATAA 58.173 30.769 10.87 0.00 0.00 1.40
2472 12291 7.375230 GCGAAATTGCGAACATAAATGAATA 57.625 32.000 10.87 0.00 0.00 1.75
2473 12292 6.259743 GCGAAATTGCGAACATAAATGAAT 57.740 33.333 10.87 0.00 0.00 2.57
2514 12333 2.637165 AGAGGAGGGTGGAAATCTTGT 58.363 47.619 0.00 0.00 0.00 3.16
2537 12356 1.337823 TGCTTTTCTAGTGTCGAGCCC 60.338 52.381 0.00 0.00 0.00 5.19
2538 12357 2.080286 TGCTTTTCTAGTGTCGAGCC 57.920 50.000 0.00 0.00 0.00 4.70
2559 12378 7.201732 GGATGTATTACCACTTGATTGAGTTGG 60.202 40.741 0.00 0.00 0.00 3.77
2576 12395 7.703621 GCGTTGTAGTAACTCAAGGATGTATTA 59.296 37.037 0.00 0.00 33.20 0.98
2590 12409 2.174363 ACCCCTTGCGTTGTAGTAAC 57.826 50.000 0.00 0.00 0.00 2.50
2610 12583 0.112412 AACTCGGGAATTGCAAGGGT 59.888 50.000 4.94 0.00 0.00 4.34
2624 12598 0.803768 CAGAGCGGTGATCCAACTCG 60.804 60.000 0.00 0.00 39.85 4.18
2635 12609 1.661341 GATGATGAAAGCAGAGCGGT 58.339 50.000 0.00 0.00 32.93 5.68
2670 12644 2.677228 CCCGGAAGCCCATTGAGT 59.323 61.111 0.73 0.00 0.00 3.41
2705 12679 0.534203 ACATTGACGAAACCCGCAGT 60.534 50.000 0.00 0.00 43.32 4.40
2707 12681 0.589223 GAACATTGACGAAACCCGCA 59.411 50.000 0.00 0.00 43.32 5.69
2732 12728 2.985896 TGTTGAAGGGGATCGATTGTC 58.014 47.619 0.00 0.00 0.00 3.18
2733 12729 3.433306 TTGTTGAAGGGGATCGATTGT 57.567 42.857 0.00 0.00 0.00 2.71
2741 12737 3.913799 TGTAGAGGATTTGTTGAAGGGGA 59.086 43.478 0.00 0.00 0.00 4.81
2760 12756 1.470285 GCCCTTACGAGTTGCGATGTA 60.470 52.381 0.00 0.00 44.57 2.29
2805 12802 2.106166 GGGAGATTCTCATCATGGTGCT 59.894 50.000 15.36 0.00 31.08 4.40
2833 12830 1.521457 GAAGATGGCGCATCGTCCA 60.521 57.895 10.83 0.00 44.67 4.02


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.