Multiple sequence alignment - TraesCS2A01G195100

Loading Multiple Alignment...

Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS2A01G195100 chr2A 100.000 2949 0 0 1 2949 164874730 164877678 0.000000e+00 5446.0
1 TraesCS2A01G195100 chr2A 88.194 288 16 8 2084 2359 164998801 164999082 7.880000e-86 327.0
2 TraesCS2A01G195100 chr2A 77.209 645 87 34 1465 2059 165105066 165105700 3.670000e-84 322.0
3 TraesCS2A01G195100 chr2A 78.771 179 27 10 727 903 165006480 165006649 3.110000e-20 110.0
4 TraesCS2A01G195100 chr2B 88.243 1565 119 22 500 2023 195170687 195169147 0.000000e+00 1810.0
5 TraesCS2A01G195100 chr2B 88.022 359 40 3 1 358 195171803 195171447 3.510000e-114 422.0
6 TraesCS2A01G195100 chr2B 88.920 352 19 8 2287 2628 195168965 195168624 1.630000e-112 416.0
7 TraesCS2A01G195100 chr2B 76.141 767 97 40 1296 2026 194954425 194953709 1.020000e-84 324.0
8 TraesCS2A01G195100 chr2B 77.244 624 73 42 1262 1828 194997621 194997010 4.780000e-78 302.0
9 TraesCS2A01G195100 chr2B 90.099 202 20 0 1628 1829 195167065 195166864 2.250000e-66 263.0
10 TraesCS2A01G195100 chr2B 91.620 179 15 0 1628 1806 195059298 195059120 6.310000e-62 248.0
11 TraesCS2A01G195100 chr2B 96.875 32 1 0 862 893 194954960 194954929 1.000000e-03 54.7
12 TraesCS2A01G195100 chr2B 96.875 32 1 0 862 893 194998031 194998000 1.000000e-03 54.7
13 TraesCS2A01G195100 chr2D 88.210 458 24 9 687 1120 136635876 136635425 1.210000e-143 520.0
14 TraesCS2A01G195100 chr2D 83.432 507 44 13 82 569 136636454 136635969 4.510000e-118 435.0
15 TraesCS2A01G195100 chr2D 75.937 827 100 42 1255 2026 136515121 136514339 1.690000e-87 333.0
16 TraesCS2A01G195100 chr2D 77.796 617 60 29 752 1318 136753950 136754539 2.850000e-80 309.0
17 TraesCS2A01G195100 chr2D 91.500 200 17 0 1629 1828 136612046 136611847 2.900000e-70 276.0
18 TraesCS2A01G195100 chr2D 83.737 289 21 12 2085 2359 136521939 136521663 1.750000e-62 250.0
19 TraesCS2A01G195100 chr2D 79.325 237 15 13 1939 2150 136525320 136525093 5.130000e-28 135.0
20 TraesCS2A01G195100 chr2D 79.167 168 23 7 1469 1626 136650906 136650741 4.020000e-19 106.0
21 TraesCS2A01G195100 chr2D 95.455 44 2 0 2212 2255 136525084 136525041 1.470000e-08 71.3
22 TraesCS2A01G195100 chr1B 77.054 645 88 32 1465 2059 512052404 512053038 1.710000e-82 316.0
23 TraesCS2A01G195100 chr1B 93.182 88 4 2 2797 2884 671329067 671329152 8.580000e-26 128.0
24 TraesCS2A01G195100 chr5A 98.013 151 3 0 2799 2949 692875586 692875736 2.250000e-66 263.0
25 TraesCS2A01G195100 chr5A 96.178 157 6 0 2793 2949 658620428 658620584 1.050000e-64 257.0
26 TraesCS2A01G195100 chr1A 96.689 151 5 0 2799 2949 586931173 586931023 4.880000e-63 252.0
27 TraesCS2A01G195100 chr1A 87.500 56 1 6 3 57 109433888 109433938 3.170000e-05 60.2
28 TraesCS2A01G195100 chr5B 87.662 154 16 3 2798 2949 577854489 577854641 3.020000e-40 176.0
29 TraesCS2A01G195100 chr5B 88.276 145 17 0 2798 2942 660240253 660240109 1.090000e-39 174.0
30 TraesCS2A01G195100 chr4B 87.248 149 17 1 2803 2949 630315809 630315957 5.050000e-38 169.0
31 TraesCS2A01G195100 chr7B 90.351 114 8 3 2799 2912 696589828 696589718 2.370000e-31 147.0
32 TraesCS2A01G195100 chr3B 84.314 153 21 2 2797 2949 680317400 680317251 2.370000e-31 147.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS2A01G195100 chr2A 164874730 164877678 2948 False 5446.00 5446 100.000 1 2949 1 chr2A.!!$F1 2948
1 TraesCS2A01G195100 chr2A 165105066 165105700 634 False 322.00 322 77.209 1465 2059 1 chr2A.!!$F4 594
2 TraesCS2A01G195100 chr2B 195166864 195171803 4939 True 727.75 1810 88.821 1 2628 4 chr2B.!!$R4 2627
3 TraesCS2A01G195100 chr2D 136635425 136636454 1029 True 477.50 520 85.821 82 1120 2 chr2D.!!$R5 1038
4 TraesCS2A01G195100 chr2D 136514339 136515121 782 True 333.00 333 75.937 1255 2026 1 chr2D.!!$R1 771
5 TraesCS2A01G195100 chr2D 136753950 136754539 589 False 309.00 309 77.796 752 1318 1 chr2D.!!$F1 566
6 TraesCS2A01G195100 chr1B 512052404 512053038 634 False 316.00 316 77.054 1465 2059 1 chr1B.!!$F1 594

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
987 1683 0.175989 CCGTGGTTAGGGAGAAGAGC 59.824 60.0 0.0 0.0 33.64 4.09 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2236 3034 0.096976 GTGCTGTTACGATTGCGCAT 59.903 50.0 12.75 0.4 42.48 4.73 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
53 54 3.836949 GCAAATCTTTTGCCTCATTCGA 58.163 40.909 12.74 0.00 39.38 3.71
59 60 4.870363 TCTTTTGCCTCATTCGAAAAAGG 58.130 39.130 19.73 19.73 38.04 3.11
72 73 7.606456 TCATTCGAAAAAGGAAATAGTGTAGCT 59.394 33.333 0.00 0.00 0.00 3.32
74 75 9.614792 ATTCGAAAAAGGAAATAGTGTAGCTAT 57.385 29.630 0.00 0.00 41.91 2.97
77 78 9.309516 CGAAAAAGGAAATAGTGTAGCTATACA 57.690 33.333 21.04 4.23 39.36 2.29
136 137 1.349234 GCGACATTGACCCAAATTGC 58.651 50.000 0.00 0.00 0.00 3.56
157 158 6.801539 TGCAACTATCTTTTTCTACAGGTG 57.198 37.500 0.00 0.00 0.00 4.00
163 164 8.762481 ACTATCTTTTTCTACAGGTGGTTTTT 57.238 30.769 0.00 0.00 0.00 1.94
227 228 7.400439 TCTGATCTTTGAATGATTGTCCTCTT 58.600 34.615 0.00 0.00 0.00 2.85
263 264 7.396419 TCGTTTTTAAGCATAGCGAAGTATTC 58.604 34.615 0.00 0.00 43.09 1.75
272 273 8.918961 AGCATAGCGAAGTATTCTAATATCAC 57.081 34.615 0.00 0.00 44.75 3.06
297 298 5.200454 GCACAATACAACGCAAGATATCTG 58.800 41.667 5.86 2.06 43.62 2.90
321 322 5.876357 AGGAGGTGCTCAGTAAAATAAACA 58.124 37.500 0.00 0.00 31.08 2.83
322 323 6.485171 AGGAGGTGCTCAGTAAAATAAACAT 58.515 36.000 0.00 0.00 31.08 2.71
350 352 5.604010 TTTTCAACTTTGGTGCTTGTTTG 57.396 34.783 0.00 0.00 0.00 2.93
459 923 1.380112 GGCTCTGTAGGACCTCCGT 60.380 63.158 0.00 0.00 42.08 4.69
485 949 7.602517 AGAATCAGTAATTTTTCTCCGTCTG 57.397 36.000 0.00 0.00 0.00 3.51
531 1156 3.274067 GCCTTTGCGTTACCCTGG 58.726 61.111 0.00 0.00 0.00 4.45
576 1201 8.375493 ACCATACATACTCTCTTTTGTTCCTA 57.625 34.615 0.00 0.00 0.00 2.94
577 1202 8.822805 ACCATACATACTCTCTTTTGTTCCTAA 58.177 33.333 0.00 0.00 0.00 2.69
578 1203 9.319143 CCATACATACTCTCTTTTGTTCCTAAG 57.681 37.037 0.00 0.00 0.00 2.18
579 1204 9.877178 CATACATACTCTCTTTTGTTCCTAAGT 57.123 33.333 0.00 0.00 0.00 2.24
617 1245 9.515020 TTCAAACTAATTCAAAATCAGTGTGTC 57.485 29.630 0.00 0.00 0.00 3.67
637 1265 2.470999 TCGTTTCGTGGTACGTTAAAGC 59.529 45.455 0.00 0.00 43.14 3.51
640 1268 1.967762 TCGTGGTACGTTAAAGCGAG 58.032 50.000 0.00 0.00 43.14 5.03
664 1295 1.200519 TGGTATCCTGCTGTACCACC 58.799 55.000 8.48 2.63 43.97 4.61
665 1296 1.200519 GGTATCCTGCTGTACCACCA 58.799 55.000 5.76 0.00 40.07 4.17
666 1297 1.768870 GGTATCCTGCTGTACCACCAT 59.231 52.381 5.76 0.00 40.07 3.55
667 1298 2.172717 GGTATCCTGCTGTACCACCATT 59.827 50.000 5.76 0.00 40.07 3.16
668 1299 2.717639 ATCCTGCTGTACCACCATTC 57.282 50.000 0.00 0.00 0.00 2.67
669 1300 1.357137 TCCTGCTGTACCACCATTCA 58.643 50.000 0.00 0.00 0.00 2.57
671 1302 2.092968 TCCTGCTGTACCACCATTCATC 60.093 50.000 0.00 0.00 0.00 2.92
672 1303 2.092753 CCTGCTGTACCACCATTCATCT 60.093 50.000 0.00 0.00 0.00 2.90
674 1305 4.202398 CCTGCTGTACCACCATTCATCTAT 60.202 45.833 0.00 0.00 0.00 1.98
675 1306 4.960938 TGCTGTACCACCATTCATCTATC 58.039 43.478 0.00 0.00 0.00 2.08
679 1310 6.573289 GCTGTACCACCATTCATCTATCCTAG 60.573 46.154 0.00 0.00 0.00 3.02
680 1311 6.382087 TGTACCACCATTCATCTATCCTAGT 58.618 40.000 0.00 0.00 0.00 2.57
681 1312 5.815233 ACCACCATTCATCTATCCTAGTG 57.185 43.478 0.00 0.00 0.00 2.74
682 1313 5.467738 ACCACCATTCATCTATCCTAGTGA 58.532 41.667 0.00 0.00 0.00 3.41
683 1314 5.905331 ACCACCATTCATCTATCCTAGTGAA 59.095 40.000 0.00 0.00 33.59 3.18
684 1315 6.042552 ACCACCATTCATCTATCCTAGTGAAG 59.957 42.308 0.00 0.00 33.04 3.02
685 1316 5.931146 CACCATTCATCTATCCTAGTGAAGC 59.069 44.000 0.00 0.00 33.04 3.86
686 1317 5.167121 CCATTCATCTATCCTAGTGAAGCG 58.833 45.833 0.00 0.00 33.04 4.68
688 1319 6.350864 CCATTCATCTATCCTAGTGAAGCGAT 60.351 42.308 0.00 0.00 33.04 4.58
689 1320 5.888691 TCATCTATCCTAGTGAAGCGATC 57.111 43.478 0.00 0.00 0.00 3.69
690 1321 4.393371 TCATCTATCCTAGTGAAGCGATCG 59.607 45.833 11.69 11.69 0.00 3.69
696 1356 2.605823 CCTAGTGAAGCGATCGTCATCC 60.606 54.545 17.81 2.89 33.51 3.51
708 1368 1.063616 TCGTCATCCGCGTCTTAGAAG 59.936 52.381 4.92 0.00 36.19 2.85
975 1671 1.766496 TCTCCAAAACTCTCCGTGGTT 59.234 47.619 0.00 0.00 32.68 3.67
987 1683 0.175989 CCGTGGTTAGGGAGAAGAGC 59.824 60.000 0.00 0.00 33.64 4.09
1033 1733 6.544928 TGCATCCTCTTAATTAGTCAGTGA 57.455 37.500 0.00 0.00 0.00 3.41
1035 1735 6.070824 TGCATCCTCTTAATTAGTCAGTGACA 60.071 38.462 24.73 5.88 34.60 3.58
1057 1761 4.729868 AGGCTTTCCTGTTGATAGTTTGT 58.270 39.130 0.00 0.00 42.34 2.83
1085 1789 7.113264 GTGCATGTTATTTTGGTGAAAATTTGC 59.887 33.333 0.00 0.00 41.22 3.68
1128 1839 4.563976 CCGATGAATGTTCTTGCATTTTCC 59.436 41.667 0.00 0.00 38.98 3.13
1138 1849 2.723124 TGCATTTTCCTTTTCTCCGC 57.277 45.000 0.00 0.00 0.00 5.54
1171 1887 2.807967 CGGAGCACATTGTCTTTCTTGA 59.192 45.455 0.00 0.00 0.00 3.02
1172 1888 3.364366 CGGAGCACATTGTCTTTCTTGAC 60.364 47.826 0.00 0.00 37.47 3.18
1184 1900 5.106317 TGTCTTTCTTGACGATAATTTGGCC 60.106 40.000 0.00 0.00 39.64 5.36
1185 1901 4.094294 TCTTTCTTGACGATAATTTGGCCG 59.906 41.667 0.00 0.00 0.00 6.13
1208 1924 6.238374 CCGTGGATAGCGTTTCAAAAGATTAT 60.238 38.462 0.00 0.00 0.00 1.28
1245 1967 4.211389 GCGTTATTTGTTGTCACTCACTG 58.789 43.478 0.00 0.00 0.00 3.66
1253 1975 0.815213 TGTCACTCACTGCTGGCAAC 60.815 55.000 0.00 0.00 0.00 4.17
1288 2011 0.035881 TTGCTCTGCCACTTCCTCTG 59.964 55.000 0.00 0.00 0.00 3.35
1305 2034 5.777449 TCCTCTGGTTACCAAGATCTGATA 58.223 41.667 5.31 0.00 30.80 2.15
1318 2047 8.954350 ACCAAGATCTGATATTCTTGTTTCTTG 58.046 33.333 14.88 9.71 44.70 3.02
1389 2118 4.065789 AGCGAGGAAGAACAAGGTAAAAG 58.934 43.478 0.00 0.00 0.00 2.27
1394 2123 7.132863 CGAGGAAGAACAAGGTAAAAGAAAAG 58.867 38.462 0.00 0.00 0.00 2.27
1395 2124 7.012044 CGAGGAAGAACAAGGTAAAAGAAAAGA 59.988 37.037 0.00 0.00 0.00 2.52
1428 2157 2.399916 TGCACATTCACCATCGATCA 57.600 45.000 0.00 0.00 0.00 2.92
1447 2176 0.251354 ACGAGTTCCTCTGCATGCAT 59.749 50.000 22.97 3.67 0.00 3.96
1489 2218 1.438222 GTTCTTGCGTTCGTTCGGC 60.438 57.895 4.56 0.00 0.00 5.54
1509 2238 1.164411 CTCTCTGTCTGACTCTGCGT 58.836 55.000 9.51 0.00 0.00 5.24
1632 2394 2.249535 CGCGCCTTCCTCATGATGG 61.250 63.158 0.00 0.00 40.47 3.51
1641 2403 0.812811 CCTCATGATGGTCTGCGTGG 60.813 60.000 0.00 0.00 0.00 4.94
1790 2552 1.188219 TCCTGGTGCTGGTGAGTCTC 61.188 60.000 0.00 0.00 0.00 3.36
1801 2563 0.598680 GTGAGTCTCTGCGCTGTGTT 60.599 55.000 9.73 2.50 0.00 3.32
1829 2592 7.494298 GTCTGTTCTCTTCTTTCTCAAGTTTCT 59.506 37.037 0.00 0.00 0.00 2.52
1830 2593 8.696374 TCTGTTCTCTTCTTTCTCAAGTTTCTA 58.304 33.333 0.00 0.00 0.00 2.10
1831 2594 8.879342 TGTTCTCTTCTTTCTCAAGTTTCTAG 57.121 34.615 0.00 0.00 0.00 2.43
1832 2595 8.478877 TGTTCTCTTCTTTCTCAAGTTTCTAGT 58.521 33.333 0.00 0.00 0.00 2.57
1833 2596 8.760569 GTTCTCTTCTTTCTCAAGTTTCTAGTG 58.239 37.037 0.00 0.00 0.00 2.74
1857 2638 0.863144 TTAACTTGCACTCGCCGTTC 59.137 50.000 0.00 0.00 37.32 3.95
1889 2670 2.041301 CGGGGGTGGAGGATGGTA 60.041 66.667 0.00 0.00 0.00 3.25
1957 2738 3.756434 GGGTCGAAGGTTGATCATTTTGA 59.244 43.478 0.00 0.00 0.00 2.69
1977 2758 2.167861 GTCTGGAGATGCGCCGTTC 61.168 63.158 4.18 0.00 0.00 3.95
1990 2771 1.725164 CGCCGTTCTGTTTAGTTCCTC 59.275 52.381 0.00 0.00 0.00 3.71
1991 2772 2.609737 CGCCGTTCTGTTTAGTTCCTCT 60.610 50.000 0.00 0.00 0.00 3.69
2018 2804 4.156190 GCTAAGTTAGAAGTTTGGAAGGGC 59.844 45.833 14.27 0.00 0.00 5.19
2020 2806 2.716969 AGTTAGAAGTTTGGAAGGGCCT 59.283 45.455 0.00 0.00 37.63 5.19
2021 2807 2.820197 GTTAGAAGTTTGGAAGGGCCTG 59.180 50.000 6.92 0.00 37.63 4.85
2022 2808 0.853530 AGAAGTTTGGAAGGGCCTGT 59.146 50.000 6.92 0.00 37.63 4.00
2023 2809 0.961753 GAAGTTTGGAAGGGCCTGTG 59.038 55.000 6.92 0.00 37.63 3.66
2024 2810 0.555769 AAGTTTGGAAGGGCCTGTGA 59.444 50.000 6.92 0.00 37.63 3.58
2026 2812 0.890683 GTTTGGAAGGGCCTGTGATG 59.109 55.000 6.92 0.00 37.63 3.07
2030 2818 1.380302 GAAGGGCCTGTGATGTGGT 59.620 57.895 6.92 0.00 0.00 4.16
2031 2819 0.962356 GAAGGGCCTGTGATGTGGTG 60.962 60.000 6.92 0.00 0.00 4.17
2033 2821 1.675641 GGGCCTGTGATGTGGTGTC 60.676 63.158 0.84 0.00 0.00 3.67
2041 2829 2.488153 TGTGATGTGGTGTCTAGTCTCG 59.512 50.000 0.00 0.00 0.00 4.04
2042 2830 2.488545 GTGATGTGGTGTCTAGTCTCGT 59.511 50.000 0.00 0.00 0.00 4.18
2043 2831 2.747989 TGATGTGGTGTCTAGTCTCGTC 59.252 50.000 0.00 0.00 0.00 4.20
2046 2834 4.011966 TGTGGTGTCTAGTCTCGTCTTA 57.988 45.455 0.00 0.00 0.00 2.10
2050 2838 3.946558 GGTGTCTAGTCTCGTCTTACCAT 59.053 47.826 0.00 0.00 0.00 3.55
2054 2842 7.201803 GGTGTCTAGTCTCGTCTTACCATTATT 60.202 40.741 0.00 0.00 0.00 1.40
2055 2843 7.856894 GTGTCTAGTCTCGTCTTACCATTATTC 59.143 40.741 0.00 0.00 0.00 1.75
2056 2844 7.774157 TGTCTAGTCTCGTCTTACCATTATTCT 59.226 37.037 0.00 0.00 0.00 2.40
2057 2845 8.071368 GTCTAGTCTCGTCTTACCATTATTCTG 58.929 40.741 0.00 0.00 0.00 3.02
2061 2849 6.812160 GTCTCGTCTTACCATTATTCTGTTGT 59.188 38.462 0.00 0.00 0.00 3.32
2065 2853 7.117236 TCGTCTTACCATTATTCTGTTGTTGTC 59.883 37.037 0.00 0.00 0.00 3.18
2066 2854 7.117812 CGTCTTACCATTATTCTGTTGTTGTCT 59.882 37.037 0.00 0.00 0.00 3.41
2067 2855 8.784043 GTCTTACCATTATTCTGTTGTTGTCTT 58.216 33.333 0.00 0.00 0.00 3.01
2068 2856 8.783093 TCTTACCATTATTCTGTTGTTGTCTTG 58.217 33.333 0.00 0.00 0.00 3.02
2069 2857 6.959639 ACCATTATTCTGTTGTTGTCTTGT 57.040 33.333 0.00 0.00 0.00 3.16
2071 2859 7.202526 ACCATTATTCTGTTGTTGTCTTGTTG 58.797 34.615 0.00 0.00 0.00 3.33
2072 2860 6.144402 CCATTATTCTGTTGTTGTCTTGTTGC 59.856 38.462 0.00 0.00 0.00 4.17
2073 2861 4.717233 ATTCTGTTGTTGTCTTGTTGCA 57.283 36.364 0.00 0.00 0.00 4.08
2074 2862 4.717233 TTCTGTTGTTGTCTTGTTGCAT 57.283 36.364 0.00 0.00 0.00 3.96
2076 2864 4.422840 TCTGTTGTTGTCTTGTTGCATTG 58.577 39.130 0.00 0.00 0.00 2.82
2077 2865 3.519579 TGTTGTTGTCTTGTTGCATTGG 58.480 40.909 0.00 0.00 0.00 3.16
2078 2866 2.865551 GTTGTTGTCTTGTTGCATTGGG 59.134 45.455 0.00 0.00 0.00 4.12
2079 2867 2.382882 TGTTGTCTTGTTGCATTGGGA 58.617 42.857 0.00 0.00 0.00 4.37
2080 2868 2.964464 TGTTGTCTTGTTGCATTGGGAT 59.036 40.909 0.00 0.00 0.00 3.85
2081 2869 3.243805 TGTTGTCTTGTTGCATTGGGATG 60.244 43.478 0.00 0.00 36.32 3.51
2095 2883 6.309712 CATTGGGATGCAGTATGAAGTTAG 57.690 41.667 0.00 0.00 39.69 2.34
2096 2884 5.692115 TTGGGATGCAGTATGAAGTTAGA 57.308 39.130 0.00 0.00 39.69 2.10
2097 2885 5.692115 TGGGATGCAGTATGAAGTTAGAA 57.308 39.130 0.00 0.00 39.69 2.10
2098 2886 5.674525 TGGGATGCAGTATGAAGTTAGAAG 58.325 41.667 0.00 0.00 39.69 2.85
2108 2896 8.669243 CAGTATGAAGTTAGAAGGGATTTGAAC 58.331 37.037 0.00 0.00 39.69 3.18
2117 2905 6.332735 AGAAGGGATTTGAACTTGTTTAGC 57.667 37.500 0.00 0.00 0.00 3.09
2125 2913 3.820557 TGAACTTGTTTAGCTGAAGCCT 58.179 40.909 0.00 0.00 43.38 4.58
2126 2914 4.207165 TGAACTTGTTTAGCTGAAGCCTT 58.793 39.130 0.00 0.00 43.38 4.35
2127 2915 4.275936 TGAACTTGTTTAGCTGAAGCCTTC 59.724 41.667 0.00 0.00 43.38 3.46
2128 2916 3.820557 ACTTGTTTAGCTGAAGCCTTCA 58.179 40.909 7.00 7.00 43.38 3.02
2132 2920 3.149981 GTTTAGCTGAAGCCTTCAAGGT 58.850 45.455 8.74 10.40 43.38 3.50
2134 2922 1.613836 AGCTGAAGCCTTCAAGGTTG 58.386 50.000 8.74 0.00 43.38 3.77
2135 2923 0.600057 GCTGAAGCCTTCAAGGTTGG 59.400 55.000 8.74 0.00 39.58 3.77
2136 2924 1.819305 GCTGAAGCCTTCAAGGTTGGA 60.819 52.381 8.74 0.00 39.58 3.53
2137 2925 2.586425 CTGAAGCCTTCAAGGTTGGAA 58.414 47.619 8.74 0.00 39.58 3.53
2138 2926 2.958355 CTGAAGCCTTCAAGGTTGGAAA 59.042 45.455 8.74 0.00 39.58 3.13
2139 2927 2.693074 TGAAGCCTTCAAGGTTGGAAAC 59.307 45.455 4.27 0.00 40.88 2.78
2141 2929 5.117772 TGAAGCCTTCAAGGTTGGAAACTT 61.118 41.667 4.27 0.00 41.19 2.66
2142 2930 7.129275 TGAAGCCTTCAAGGTTGGAAACTTG 62.129 44.000 4.27 10.40 41.19 3.16
2146 2934 4.344968 CCTTCAAGGTTGGAAACTTGGAAT 59.655 41.667 15.49 0.00 43.74 3.01
2147 2935 5.291971 CTTCAAGGTTGGAAACTTGGAATG 58.708 41.667 15.49 2.58 43.74 2.67
2148 2936 5.163416 CTTCAAGGTTGGAAACTTGGAATGT 60.163 40.000 15.49 0.00 43.74 2.71
2149 2937 6.040391 CTTCAAGGTTGGAAACTTGGAATGTA 59.960 38.462 15.49 0.00 43.74 2.29
2150 2938 7.735480 CTTCAAGGTTGGAAACTTGGAATGTAG 60.735 40.741 15.49 3.04 43.74 2.74
2163 2961 8.074613 ACTTGGAATGTAGTACTATGCAGTAA 57.925 34.615 5.75 0.00 38.98 2.24
2182 2980 7.361894 GCAGTAATTTGCAACCAAAATTTCAT 58.638 30.769 0.00 0.00 43.58 2.57
2184 2982 7.804129 CAGTAATTTGCAACCAAAATTTCATGG 59.196 33.333 0.00 7.27 43.58 3.66
2194 2992 6.710692 CCAAAATTTCATGGTTAACTGCTC 57.289 37.500 5.42 0.00 31.84 4.26
2195 2993 6.458210 CCAAAATTTCATGGTTAACTGCTCT 58.542 36.000 5.42 0.00 31.84 4.09
2196 2994 6.587608 CCAAAATTTCATGGTTAACTGCTCTC 59.412 38.462 5.42 0.00 31.84 3.20
2213 3011 1.007038 TCTGCGCGTAGGTCGTTTT 60.007 52.632 24.11 0.00 42.13 2.43
2214 3012 1.005294 TCTGCGCGTAGGTCGTTTTC 61.005 55.000 24.11 0.00 42.13 2.29
2215 3013 2.262187 CTGCGCGTAGGTCGTTTTCG 62.262 60.000 17.13 0.00 45.64 3.46
2216 3014 2.367344 GCGCGTAGGTCGTTTTCGT 61.367 57.895 8.43 0.00 44.46 3.85
2227 3025 2.462565 GTCGTTTTCGTTGTGCAATCAC 59.537 45.455 0.00 0.00 44.46 3.06
2229 3027 2.540769 CGTTTTCGTTGTGCAATCACCT 60.541 45.455 0.00 0.00 39.26 4.00
2230 3028 3.042887 GTTTTCGTTGTGCAATCACCTC 58.957 45.455 0.00 0.00 42.46 3.85
2231 3029 2.254546 TTCGTTGTGCAATCACCTCT 57.745 45.000 0.00 0.00 42.46 3.69
2232 3030 1.511850 TCGTTGTGCAATCACCTCTG 58.488 50.000 0.00 0.00 42.46 3.35
2233 3031 1.202639 TCGTTGTGCAATCACCTCTGT 60.203 47.619 0.00 0.00 42.46 3.41
2234 3032 1.195448 CGTTGTGCAATCACCTCTGTC 59.805 52.381 0.00 0.00 42.46 3.51
2235 3033 2.498167 GTTGTGCAATCACCTCTGTCT 58.502 47.619 0.00 0.00 42.46 3.41
2236 3034 3.664107 GTTGTGCAATCACCTCTGTCTA 58.336 45.455 0.00 0.00 42.46 2.59
2237 3035 4.256920 GTTGTGCAATCACCTCTGTCTAT 58.743 43.478 0.00 0.00 42.46 1.98
2238 3036 3.865446 TGTGCAATCACCTCTGTCTATG 58.135 45.455 0.00 0.00 42.46 2.23
2239 3037 2.611292 GTGCAATCACCTCTGTCTATGC 59.389 50.000 0.00 0.00 37.24 3.14
2240 3038 1.863454 GCAATCACCTCTGTCTATGCG 59.137 52.381 0.00 0.00 0.00 4.73
2241 3039 1.863454 CAATCACCTCTGTCTATGCGC 59.137 52.381 0.00 0.00 0.00 6.09
2242 3040 1.114627 ATCACCTCTGTCTATGCGCA 58.885 50.000 14.96 14.96 0.00 6.09
2243 3041 0.894835 TCACCTCTGTCTATGCGCAA 59.105 50.000 17.11 2.72 0.00 4.85
2244 3042 1.482182 TCACCTCTGTCTATGCGCAAT 59.518 47.619 17.11 5.81 0.00 3.56
2245 3043 1.863454 CACCTCTGTCTATGCGCAATC 59.137 52.381 17.11 5.83 0.00 2.67
2246 3044 1.135046 CCTCTGTCTATGCGCAATCG 58.865 55.000 17.11 5.81 39.07 3.34
2247 3045 1.536922 CCTCTGTCTATGCGCAATCGT 60.537 52.381 17.11 0.00 38.14 3.73
2248 3046 2.287608 CCTCTGTCTATGCGCAATCGTA 60.288 50.000 17.11 0.05 38.14 3.43
2249 3047 3.372060 CTCTGTCTATGCGCAATCGTAA 58.628 45.455 17.11 0.00 38.14 3.18
2250 3048 3.113322 TCTGTCTATGCGCAATCGTAAC 58.887 45.455 17.11 7.95 38.14 2.50
2251 3049 2.857748 CTGTCTATGCGCAATCGTAACA 59.142 45.455 17.11 12.25 38.14 2.41
2252 3050 2.857748 TGTCTATGCGCAATCGTAACAG 59.142 45.455 17.11 1.78 38.14 3.16
2253 3051 1.858458 TCTATGCGCAATCGTAACAGC 59.142 47.619 17.11 0.00 38.14 4.40
2254 3052 1.592543 CTATGCGCAATCGTAACAGCA 59.407 47.619 17.11 1.00 39.02 4.41
2255 3053 0.096976 ATGCGCAATCGTAACAGCAC 59.903 50.000 17.11 0.00 37.44 4.40
2256 3054 1.224722 TGCGCAATCGTAACAGCACA 61.225 50.000 8.16 0.00 38.14 4.57
2257 3055 0.110419 GCGCAATCGTAACAGCACAA 60.110 50.000 0.30 0.00 38.14 3.33
2258 3056 1.591248 CGCAATCGTAACAGCACAAC 58.409 50.000 0.00 0.00 0.00 3.32
2259 3057 1.724654 CGCAATCGTAACAGCACAACC 60.725 52.381 0.00 0.00 0.00 3.77
2260 3058 1.401018 GCAATCGTAACAGCACAACCC 60.401 52.381 0.00 0.00 0.00 4.11
2261 3059 1.199097 CAATCGTAACAGCACAACCCC 59.801 52.381 0.00 0.00 0.00 4.95
2262 3060 0.690762 ATCGTAACAGCACAACCCCT 59.309 50.000 0.00 0.00 0.00 4.79
2263 3061 1.340088 TCGTAACAGCACAACCCCTA 58.660 50.000 0.00 0.00 0.00 3.53
2264 3062 1.274167 TCGTAACAGCACAACCCCTAG 59.726 52.381 0.00 0.00 0.00 3.02
2265 3063 1.450025 GTAACAGCACAACCCCTAGC 58.550 55.000 0.00 0.00 0.00 3.42
2266 3064 0.326927 TAACAGCACAACCCCTAGCC 59.673 55.000 0.00 0.00 0.00 3.93
2267 3065 2.436646 CAGCACAACCCCTAGCCG 60.437 66.667 0.00 0.00 0.00 5.52
2268 3066 4.410400 AGCACAACCCCTAGCCGC 62.410 66.667 0.00 0.00 0.00 6.53
2269 3067 4.715523 GCACAACCCCTAGCCGCA 62.716 66.667 0.00 0.00 0.00 5.69
2270 3068 2.436646 CACAACCCCTAGCCGCAG 60.437 66.667 0.00 0.00 0.00 5.18
2271 3069 2.928396 ACAACCCCTAGCCGCAGT 60.928 61.111 0.00 0.00 0.00 4.40
2272 3070 2.125106 CAACCCCTAGCCGCAGTC 60.125 66.667 0.00 0.00 0.00 3.51
2273 3071 3.771160 AACCCCTAGCCGCAGTCG 61.771 66.667 0.00 0.00 0.00 4.18
2305 3103 5.009610 GCAGGTGATCTTTTCTTTAACCACA 59.990 40.000 0.00 0.00 0.00 4.17
2307 3105 7.308435 CAGGTGATCTTTTCTTTAACCACATC 58.692 38.462 0.00 0.00 0.00 3.06
2308 3106 7.004086 AGGTGATCTTTTCTTTAACCACATCA 58.996 34.615 0.00 0.00 0.00 3.07
2319 3117 6.761242 TCTTTAACCACATCATATCAGTTCCG 59.239 38.462 0.00 0.00 0.00 4.30
2322 3120 4.191544 ACCACATCATATCAGTTCCGTTG 58.808 43.478 0.00 0.00 0.00 4.10
2330 3128 3.594603 ATCAGTTCCGTTGGACTGTAG 57.405 47.619 12.15 0.00 34.69 2.74
2347 3145 3.090037 TGTAGCCTGTACTCTCTGGTTC 58.910 50.000 0.00 0.00 0.00 3.62
2391 3194 0.179189 CCGCCGCACTTGATTTTCTC 60.179 55.000 0.00 0.00 0.00 2.87
2392 3195 0.798776 CGCCGCACTTGATTTTCTCT 59.201 50.000 0.00 0.00 0.00 3.10
2393 3196 1.197721 CGCCGCACTTGATTTTCTCTT 59.802 47.619 0.00 0.00 0.00 2.85
2416 3219 1.139163 GTGCAATCCCAACGCTTTTG 58.861 50.000 0.00 0.00 0.00 2.44
2464 3267 5.424121 TTCTGCTTCTCTAACAAAACAGC 57.576 39.130 0.00 0.00 0.00 4.40
2540 3344 8.416329 CCATTCAGAAAAGAAAGGAGAAAAAGA 58.584 33.333 0.00 0.00 38.34 2.52
2557 3361 6.836007 AGAAAAAGAAGATGGTTCAGAAAGGT 59.164 34.615 0.00 0.00 0.00 3.50
2561 3365 8.533569 AAAGAAGATGGTTCAGAAAGGTAAAA 57.466 30.769 0.00 0.00 0.00 1.52
2591 3395 2.519013 GAAAAGCTGGGTTGATCCTGT 58.481 47.619 0.00 0.00 36.25 4.00
2597 3401 0.914417 TGGGTTGATCCTGTCCTCCC 60.914 60.000 0.00 0.00 38.46 4.30
2598 3402 0.621862 GGGTTGATCCTGTCCTCCCT 60.622 60.000 0.00 0.00 36.45 4.20
2599 3403 0.543749 GGTTGATCCTGTCCTCCCTG 59.456 60.000 0.00 0.00 0.00 4.45
2601 3405 1.274703 TTGATCCTGTCCTCCCTGCC 61.275 60.000 0.00 0.00 0.00 4.85
2602 3406 1.690633 GATCCTGTCCTCCCTGCCA 60.691 63.158 0.00 0.00 0.00 4.92
2603 3407 1.977293 GATCCTGTCCTCCCTGCCAC 61.977 65.000 0.00 0.00 0.00 5.01
2605 3409 4.087892 CTGTCCTCCCTGCCACGG 62.088 72.222 0.00 0.00 0.00 4.94
2649 3679 1.190763 CGTGGACGTTAAAGTGAACCG 59.809 52.381 0.00 0.00 34.11 4.44
2653 3683 2.414138 GGACGTTAAAGTGAACCGATGG 59.586 50.000 0.00 0.00 0.00 3.51
2664 3694 1.852067 AACCGATGGCGTTTGTGAGC 61.852 55.000 0.00 0.00 35.23 4.26
2695 3725 4.219033 GTCGTCATGTGTGATTTGGAAAC 58.781 43.478 0.00 0.00 36.60 2.78
2712 3742 6.463995 TGGAAACAAGCACTTGATTTTACT 57.536 33.333 16.95 0.00 42.93 2.24
2713 3743 6.272318 TGGAAACAAGCACTTGATTTTACTG 58.728 36.000 16.95 0.00 42.93 2.74
2714 3744 6.127479 TGGAAACAAGCACTTGATTTTACTGT 60.127 34.615 16.95 0.00 42.93 3.55
2715 3745 6.756542 GGAAACAAGCACTTGATTTTACTGTT 59.243 34.615 16.95 0.00 42.93 3.16
2716 3746 7.043391 GGAAACAAGCACTTGATTTTACTGTTC 60.043 37.037 16.95 5.96 42.93 3.18
2717 3747 5.831997 ACAAGCACTTGATTTTACTGTTCC 58.168 37.500 16.95 0.00 42.93 3.62
2718 3748 4.749245 AGCACTTGATTTTACTGTTCCG 57.251 40.909 0.00 0.00 0.00 4.30
2719 3749 4.385825 AGCACTTGATTTTACTGTTCCGA 58.614 39.130 0.00 0.00 0.00 4.55
2720 3750 4.819630 AGCACTTGATTTTACTGTTCCGAA 59.180 37.500 0.00 0.00 0.00 4.30
2721 3751 5.298276 AGCACTTGATTTTACTGTTCCGAAA 59.702 36.000 0.00 0.00 0.00 3.46
2722 3752 5.974751 GCACTTGATTTTACTGTTCCGAAAA 59.025 36.000 0.00 0.00 0.00 2.29
2723 3753 6.474102 GCACTTGATTTTACTGTTCCGAAAAA 59.526 34.615 0.00 0.00 0.00 1.94
2761 3791 1.471684 GGTGGCAATTGAGCTCTGAAG 59.528 52.381 16.19 3.93 34.17 3.02
2765 3795 2.816087 GGCAATTGAGCTCTGAAGTGAA 59.184 45.455 16.19 0.00 34.17 3.18
2770 3800 5.938438 ATTGAGCTCTGAAGTGAAGAAAC 57.062 39.130 16.19 0.00 0.00 2.78
2771 3801 4.679373 TGAGCTCTGAAGTGAAGAAACT 57.321 40.909 16.19 0.00 0.00 2.66
2784 3814 7.227049 AGTGAAGAAACTGAAACCTGAAAAA 57.773 32.000 0.00 0.00 0.00 1.94
2790 3820 2.223572 ACTGAAACCTGAAAAAGCTGCG 60.224 45.455 0.00 0.00 0.00 5.18
2791 3821 1.748493 TGAAACCTGAAAAAGCTGCGT 59.252 42.857 0.00 0.00 0.00 5.24
2792 3822 2.223479 TGAAACCTGAAAAAGCTGCGTC 60.223 45.455 0.00 0.00 0.00 5.19
2834 4488 3.467374 AGAGCATTCTCTCCGATTTCC 57.533 47.619 0.00 0.00 46.32 3.13
2835 4489 2.768527 AGAGCATTCTCTCCGATTTCCA 59.231 45.455 0.00 0.00 46.32 3.53
2836 4490 3.390639 AGAGCATTCTCTCCGATTTCCAT 59.609 43.478 0.00 0.00 46.32 3.41
2838 4492 5.070981 AGAGCATTCTCTCCGATTTCCATTA 59.929 40.000 0.00 0.00 46.32 1.90
2839 4493 5.684704 AGCATTCTCTCCGATTTCCATTAA 58.315 37.500 0.00 0.00 0.00 1.40
2840 4494 6.122277 AGCATTCTCTCCGATTTCCATTAAA 58.878 36.000 0.00 0.00 0.00 1.52
2841 4495 6.603201 AGCATTCTCTCCGATTTCCATTAAAA 59.397 34.615 0.00 0.00 0.00 1.52
2842 4496 6.914757 GCATTCTCTCCGATTTCCATTAAAAG 59.085 38.462 0.00 0.00 0.00 2.27
2844 4498 8.677300 CATTCTCTCCGATTTCCATTAAAAGAA 58.323 33.333 0.00 0.00 0.00 2.52
2855 4509 9.657419 ATTTCCATTAAAAGAAATCACCATGTC 57.343 29.630 9.23 0.00 38.06 3.06
2856 4510 8.421249 TTCCATTAAAAGAAATCACCATGTCT 57.579 30.769 0.00 0.00 0.00 3.41
2857 4511 8.421249 TCCATTAAAAGAAATCACCATGTCTT 57.579 30.769 0.00 0.00 38.12 3.01
2858 4512 9.527157 TCCATTAAAAGAAATCACCATGTCTTA 57.473 29.630 0.00 0.00 35.75 2.10
2859 4513 9.573133 CCATTAAAAGAAATCACCATGTCTTAC 57.427 33.333 0.00 0.00 35.75 2.34
2863 4517 8.918202 AAAAGAAATCACCATGTCTTACTACA 57.082 30.769 0.00 0.00 35.75 2.74
2864 4518 8.553459 AAAGAAATCACCATGTCTTACTACAG 57.447 34.615 0.00 0.00 35.75 2.74
2865 4519 7.482169 AGAAATCACCATGTCTTACTACAGA 57.518 36.000 0.00 0.00 31.70 3.41
2866 4520 7.551585 AGAAATCACCATGTCTTACTACAGAG 58.448 38.462 0.00 0.00 31.70 3.35
2867 4521 4.720649 TCACCATGTCTTACTACAGAGC 57.279 45.455 0.00 0.00 31.70 4.09
2868 4522 4.086457 TCACCATGTCTTACTACAGAGCA 58.914 43.478 0.00 0.00 31.70 4.26
2870 4524 4.158579 CACCATGTCTTACTACAGAGCAGA 59.841 45.833 0.00 0.00 31.70 4.26
2871 4525 4.772624 ACCATGTCTTACTACAGAGCAGAA 59.227 41.667 0.00 0.00 31.70 3.02
2872 4526 5.246203 ACCATGTCTTACTACAGAGCAGAAA 59.754 40.000 0.00 0.00 31.70 2.52
2873 4527 5.809562 CCATGTCTTACTACAGAGCAGAAAG 59.190 44.000 0.00 0.00 31.70 2.62
2874 4528 6.350528 CCATGTCTTACTACAGAGCAGAAAGA 60.351 42.308 0.00 0.00 31.70 2.52
2875 4529 6.260870 TGTCTTACTACAGAGCAGAAAGAG 57.739 41.667 0.00 0.00 0.00 2.85
2876 4530 6.004574 TGTCTTACTACAGAGCAGAAAGAGA 58.995 40.000 0.00 0.00 0.00 3.10
2877 4531 6.490381 TGTCTTACTACAGAGCAGAAAGAGAA 59.510 38.462 0.00 0.00 0.00 2.87
2878 4532 7.014326 TGTCTTACTACAGAGCAGAAAGAGAAA 59.986 37.037 0.00 0.00 0.00 2.52
2879 4533 7.327518 GTCTTACTACAGAGCAGAAAGAGAAAC 59.672 40.741 0.00 0.00 0.00 2.78
2880 4534 5.799827 ACTACAGAGCAGAAAGAGAAACT 57.200 39.130 0.00 0.00 0.00 2.66
2881 4535 6.902771 ACTACAGAGCAGAAAGAGAAACTA 57.097 37.500 0.00 0.00 0.00 2.24
2882 4536 7.291411 ACTACAGAGCAGAAAGAGAAACTAA 57.709 36.000 0.00 0.00 0.00 2.24
2883 4537 7.727181 ACTACAGAGCAGAAAGAGAAACTAAA 58.273 34.615 0.00 0.00 0.00 1.85
2884 4538 8.204836 ACTACAGAGCAGAAAGAGAAACTAAAA 58.795 33.333 0.00 0.00 0.00 1.52
2885 4539 7.489574 ACAGAGCAGAAAGAGAAACTAAAAG 57.510 36.000 0.00 0.00 0.00 2.27
2886 4540 7.275920 ACAGAGCAGAAAGAGAAACTAAAAGA 58.724 34.615 0.00 0.00 0.00 2.52
2887 4541 7.225734 ACAGAGCAGAAAGAGAAACTAAAAGAC 59.774 37.037 0.00 0.00 0.00 3.01
2888 4542 7.225538 CAGAGCAGAAAGAGAAACTAAAAGACA 59.774 37.037 0.00 0.00 0.00 3.41
2889 4543 7.770897 AGAGCAGAAAGAGAAACTAAAAGACAA 59.229 33.333 0.00 0.00 0.00 3.18
2890 4544 8.281212 AGCAGAAAGAGAAACTAAAAGACAAA 57.719 30.769 0.00 0.00 0.00 2.83
2891 4545 8.401709 AGCAGAAAGAGAAACTAAAAGACAAAG 58.598 33.333 0.00 0.00 0.00 2.77
2893 4547 8.184192 CAGAAAGAGAAACTAAAAGACAAAGCA 58.816 33.333 0.00 0.00 0.00 3.91
2894 4548 8.907885 AGAAAGAGAAACTAAAAGACAAAGCAT 58.092 29.630 0.00 0.00 0.00 3.79
2899 4553 9.170584 GAGAAACTAAAAGACAAAGCATAACAC 57.829 33.333 0.00 0.00 0.00 3.32
2900 4554 8.903820 AGAAACTAAAAGACAAAGCATAACACT 58.096 29.630 0.00 0.00 0.00 3.55
2901 4555 9.170584 GAAACTAAAAGACAAAGCATAACACTC 57.829 33.333 0.00 0.00 0.00 3.51
2904 4558 5.438761 AAAGACAAAGCATAACACTCCAC 57.561 39.130 0.00 0.00 0.00 4.02
2907 4561 3.412386 ACAAAGCATAACACTCCACTCC 58.588 45.455 0.00 0.00 0.00 3.85
2908 4562 2.749621 CAAAGCATAACACTCCACTCCC 59.250 50.000 0.00 0.00 0.00 4.30
2909 4563 0.912486 AGCATAACACTCCACTCCCC 59.088 55.000 0.00 0.00 0.00 4.81
2911 4565 2.116238 GCATAACACTCCACTCCCCTA 58.884 52.381 0.00 0.00 0.00 3.53
2912 4566 2.158943 GCATAACACTCCACTCCCCTAC 60.159 54.545 0.00 0.00 0.00 3.18
2913 4567 1.843368 TAACACTCCACTCCCCTACG 58.157 55.000 0.00 0.00 0.00 3.51
2914 4568 0.113776 AACACTCCACTCCCCTACGA 59.886 55.000 0.00 0.00 0.00 3.43
2915 4569 0.113776 ACACTCCACTCCCCTACGAA 59.886 55.000 0.00 0.00 0.00 3.85
2920 4574 3.055312 ACTCCACTCCCCTACGAATTTTC 60.055 47.826 0.00 0.00 0.00 2.29
2921 4575 2.907696 TCCACTCCCCTACGAATTTTCA 59.092 45.455 0.00 0.00 0.00 2.69
2922 4576 3.328343 TCCACTCCCCTACGAATTTTCAA 59.672 43.478 0.00 0.00 0.00 2.69
2923 4577 4.018779 TCCACTCCCCTACGAATTTTCAAT 60.019 41.667 0.00 0.00 0.00 2.57
2924 4578 4.705023 CCACTCCCCTACGAATTTTCAATT 59.295 41.667 0.00 0.00 0.00 2.32
2925 4579 5.393027 CCACTCCCCTACGAATTTTCAATTG 60.393 44.000 0.00 0.00 0.00 2.32
2927 4581 3.445805 TCCCCTACGAATTTTCAATTGCC 59.554 43.478 0.00 0.00 0.00 4.52
2928 4582 3.194542 CCCCTACGAATTTTCAATTGCCA 59.805 43.478 0.00 0.00 0.00 4.92
2929 4583 4.322349 CCCCTACGAATTTTCAATTGCCAA 60.322 41.667 0.00 0.00 0.00 4.52
2930 4584 5.233988 CCCTACGAATTTTCAATTGCCAAA 58.766 37.500 0.00 2.92 0.00 3.28
2931 4585 5.120053 CCCTACGAATTTTCAATTGCCAAAC 59.880 40.000 0.00 0.00 0.00 2.93
2932 4586 5.925969 CCTACGAATTTTCAATTGCCAAACT 59.074 36.000 0.00 0.00 0.00 2.66
2933 4587 7.087639 CCTACGAATTTTCAATTGCCAAACTA 58.912 34.615 0.00 0.00 0.00 2.24
2934 4588 7.596995 CCTACGAATTTTCAATTGCCAAACTAA 59.403 33.333 0.00 0.00 0.00 2.24
2935 4589 7.406799 ACGAATTTTCAATTGCCAAACTAAG 57.593 32.000 0.00 0.00 0.00 2.18
2936 4590 6.423604 ACGAATTTTCAATTGCCAAACTAAGG 59.576 34.615 0.00 0.00 0.00 2.69
2937 4591 6.644592 CGAATTTTCAATTGCCAAACTAAGGA 59.355 34.615 0.00 0.00 0.00 3.36
2938 4592 7.170658 CGAATTTTCAATTGCCAAACTAAGGAA 59.829 33.333 0.00 0.00 0.00 3.36
2939 4593 7.967890 ATTTTCAATTGCCAAACTAAGGAAG 57.032 32.000 0.00 0.00 0.00 3.46
2940 4594 5.467035 TTCAATTGCCAAACTAAGGAAGG 57.533 39.130 0.00 0.00 0.00 3.46
2941 4595 4.735369 TCAATTGCCAAACTAAGGAAGGA 58.265 39.130 0.00 0.00 0.00 3.36
2942 4596 4.766891 TCAATTGCCAAACTAAGGAAGGAG 59.233 41.667 0.00 0.00 0.00 3.69
2943 4597 2.879103 TGCCAAACTAAGGAAGGAGG 57.121 50.000 0.00 0.00 0.00 4.30
2944 4598 2.344592 TGCCAAACTAAGGAAGGAGGA 58.655 47.619 0.00 0.00 0.00 3.71
2945 4599 2.714250 TGCCAAACTAAGGAAGGAGGAA 59.286 45.455 0.00 0.00 0.00 3.36
2946 4600 3.139397 TGCCAAACTAAGGAAGGAGGAAA 59.861 43.478 0.00 0.00 0.00 3.13
2947 4601 4.149598 GCCAAACTAAGGAAGGAGGAAAA 58.850 43.478 0.00 0.00 0.00 2.29
2948 4602 4.218635 GCCAAACTAAGGAAGGAGGAAAAG 59.781 45.833 0.00 0.00 0.00 2.27
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
19 20 8.831000 GCAAAAGATTTGCCATTTCATTATTC 57.169 30.769 15.12 0.00 39.38 1.75
51 52 9.309516 TGTATAGCTACACTATTTCCTTTTTCG 57.690 33.333 3.42 0.00 41.91 3.46
136 137 7.745620 AACCACCTGTAGAAAAAGATAGTTG 57.254 36.000 0.00 0.00 0.00 3.16
174 175 6.481954 ACAAACTCATATTTTCACCGAGAC 57.518 37.500 0.00 0.00 0.00 3.36
188 189 7.453393 TCAAAGATCAGAAGGTACAAACTCAT 58.547 34.615 0.00 0.00 0.00 2.90
238 239 6.897259 ATACTTCGCTATGCTTAAAAACGA 57.103 33.333 0.00 0.00 0.00 3.85
251 252 7.808381 GTGCAGTGATATTAGAATACTTCGCTA 59.192 37.037 0.00 0.00 34.02 4.26
263 264 6.129393 GCGTTGTATTGTGCAGTGATATTAG 58.871 40.000 0.00 0.00 0.00 1.73
267 268 3.330267 TGCGTTGTATTGTGCAGTGATA 58.670 40.909 0.00 0.00 32.73 2.15
272 273 2.967459 TCTTGCGTTGTATTGTGCAG 57.033 45.000 0.00 0.00 38.75 4.41
285 286 2.865670 GCACCTCCTCAGATATCTTGCG 60.866 54.545 1.33 0.00 0.00 4.85
297 298 5.938125 TGTTTATTTTACTGAGCACCTCCTC 59.062 40.000 0.00 0.00 0.00 3.71
330 332 4.264460 ACAAACAAGCACCAAAGTTGAA 57.736 36.364 0.00 0.00 0.00 2.69
332 334 5.402270 GCTATACAAACAAGCACCAAAGTTG 59.598 40.000 0.00 0.00 36.26 3.16
335 337 5.119931 TGCTATACAAACAAGCACCAAAG 57.880 39.130 0.00 0.00 41.15 2.77
410 844 4.609947 CCACGTATAATGCAATGCAATGT 58.390 39.130 13.45 4.64 43.62 2.71
446 910 3.952323 CTGATTCTTACGGAGGTCCTACA 59.048 47.826 0.90 0.00 0.00 2.74
459 923 9.151471 CAGACGGAGAAAAATTACTGATTCTTA 57.849 33.333 0.00 0.00 32.54 2.10
485 949 1.182667 GGGGTGTAAAATGCCTCACC 58.817 55.000 4.82 4.82 46.46 4.02
531 1156 3.431725 CCCTTGGCGCGAAACCTC 61.432 66.667 12.10 0.00 0.00 3.85
553 1178 9.877178 ACTTAGGAACAAAAGAGAGTATGTATG 57.123 33.333 0.00 0.00 0.00 2.39
617 1245 2.715519 CGCTTTAACGTACCACGAAACG 60.716 50.000 5.61 0.00 46.05 3.60
637 1265 1.373497 GCAGGATACCATCGGCTCG 60.373 63.158 0.00 0.00 37.17 5.03
640 1268 0.679505 TACAGCAGGATACCATCGGC 59.320 55.000 0.00 0.00 37.17 5.54
663 1294 5.047731 TCGCTTCACTAGGATAGATGAATGG 60.048 44.000 0.00 0.00 42.77 3.16
664 1295 6.018589 TCGCTTCACTAGGATAGATGAATG 57.981 41.667 0.00 0.00 42.77 2.67
665 1296 6.404184 CGATCGCTTCACTAGGATAGATGAAT 60.404 42.308 0.26 0.00 42.77 2.57
666 1297 5.106515 CGATCGCTTCACTAGGATAGATGAA 60.107 44.000 0.26 0.00 42.77 2.57
667 1298 4.393371 CGATCGCTTCACTAGGATAGATGA 59.607 45.833 0.26 0.00 42.77 2.92
668 1299 4.155099 ACGATCGCTTCACTAGGATAGATG 59.845 45.833 16.60 0.00 42.77 2.90
669 1300 4.328536 ACGATCGCTTCACTAGGATAGAT 58.671 43.478 16.60 0.00 42.77 1.98
671 1302 3.498777 TGACGATCGCTTCACTAGGATAG 59.501 47.826 16.60 0.00 46.50 2.08
672 1303 3.473625 TGACGATCGCTTCACTAGGATA 58.526 45.455 16.60 0.00 0.00 2.59
674 1305 1.746470 TGACGATCGCTTCACTAGGA 58.254 50.000 16.60 0.00 0.00 2.94
675 1306 2.605823 GGATGACGATCGCTTCACTAGG 60.606 54.545 16.60 0.00 0.00 3.02
690 1321 2.722071 CTCTTCTAAGACGCGGATGAC 58.278 52.381 12.47 0.00 0.00 3.06
696 1356 3.367932 TGATTTTGCTCTTCTAAGACGCG 59.632 43.478 3.53 3.53 34.25 6.01
708 1368 2.927553 ATTGACGGCTGATTTTGCTC 57.072 45.000 0.00 0.00 0.00 4.26
889 1557 4.939052 AGTTATATGCAGCGTAGAGGTT 57.061 40.909 0.00 0.00 0.00 3.50
975 1671 0.257905 TAGCACCGCTCTTCTCCCTA 59.742 55.000 0.00 0.00 40.44 3.53
1057 1761 7.798596 ATTTTCACCAAAATAACATGCACAA 57.201 28.000 0.00 0.00 39.93 3.33
1085 1789 4.095782 TCGGGAAATCAAAAATCTTAGGCG 59.904 41.667 0.00 0.00 0.00 5.52
1128 1839 2.079925 CAAGAGGAAGGCGGAGAAAAG 58.920 52.381 0.00 0.00 0.00 2.27
1138 1849 2.124942 GCTCCGGCAAGAGGAAGG 60.125 66.667 0.00 0.00 37.32 3.46
1171 1887 2.341846 ATCCACGGCCAAATTATCGT 57.658 45.000 2.24 0.00 36.19 3.73
1172 1888 2.159627 GCTATCCACGGCCAAATTATCG 59.840 50.000 2.24 0.00 0.00 2.92
1184 1900 4.600012 ATCTTTTGAAACGCTATCCACG 57.400 40.909 0.00 0.00 0.00 4.94
1185 1901 8.798153 CAAATAATCTTTTGAAACGCTATCCAC 58.202 33.333 0.00 0.00 38.58 4.02
1208 1924 1.770294 AACGCCAGGAAAACTCCAAA 58.230 45.000 0.00 0.00 0.00 3.28
1245 1967 1.470098 CATAAGGTGACAGTTGCCAGC 59.530 52.381 0.00 0.00 0.00 4.85
1253 1975 4.809958 CAGAGCAAGATCATAAGGTGACAG 59.190 45.833 0.00 0.00 40.28 3.51
1305 2034 8.055279 TCAAAGTTCAGACAAGAAACAAGAAT 57.945 30.769 0.00 0.00 0.00 2.40
1318 2047 0.238553 GCGGCCTTCAAAGTTCAGAC 59.761 55.000 0.00 0.00 0.00 3.51
1447 2176 2.167075 GTCGGGACTCGGGAGAAATAAA 59.833 50.000 2.08 0.00 39.18 1.40
1489 2218 0.451383 CGCAGAGTCAGACAGAGAGG 59.549 60.000 2.66 0.00 0.00 3.69
1509 2238 1.690893 GACCATCTGGATAGCAGAGCA 59.309 52.381 2.55 0.00 38.94 4.26
1554 2292 3.720193 CGTGAGCAGCAGCACCAC 61.720 66.667 13.85 13.85 45.49 4.16
1623 2385 0.107993 ACCACGCAGACCATCATGAG 60.108 55.000 0.09 0.00 0.00 2.90
1790 2552 1.490693 AACAGACGAACACAGCGCAG 61.491 55.000 11.47 3.33 0.00 5.18
1801 2563 5.067936 ACTTGAGAAAGAAGAGAACAGACGA 59.932 40.000 0.00 0.00 0.00 4.20
1832 2595 1.464608 GCGAGTGCAAGTTAATCAGCA 59.535 47.619 0.00 0.00 42.15 4.41
1833 2596 1.202076 GGCGAGTGCAAGTTAATCAGC 60.202 52.381 0.00 0.00 45.35 4.26
1889 2670 2.613691 CGGCGTACCTAAACAGTGAAT 58.386 47.619 0.00 0.00 0.00 2.57
1913 2694 3.446570 GCAGCCACATCCACCAGC 61.447 66.667 0.00 0.00 0.00 4.85
1937 2718 6.002062 ACTTCAAAATGATCAACCTTCGAC 57.998 37.500 0.00 0.00 0.00 4.20
1944 2725 6.808008 TCTCCAGACTTCAAAATGATCAAC 57.192 37.500 0.00 0.00 0.00 3.18
1957 2738 2.172483 AACGGCGCATCTCCAGACTT 62.172 55.000 10.83 0.00 0.00 3.01
1977 2758 6.459923 ACTTAGCAGAAGAGGAACTAAACAG 58.540 40.000 5.47 0.00 41.55 3.16
1991 2772 6.710744 CCTTCCAAACTTCTAACTTAGCAGAA 59.289 38.462 2.83 0.00 0.00 3.02
2018 2804 2.828520 AGACTAGACACCACATCACAGG 59.171 50.000 0.00 0.00 0.00 4.00
2020 2806 2.488153 CGAGACTAGACACCACATCACA 59.512 50.000 0.00 0.00 0.00 3.58
2021 2807 2.488545 ACGAGACTAGACACCACATCAC 59.511 50.000 0.00 0.00 0.00 3.06
2022 2808 2.747989 GACGAGACTAGACACCACATCA 59.252 50.000 0.00 0.00 0.00 3.07
2023 2809 3.011119 AGACGAGACTAGACACCACATC 58.989 50.000 0.00 0.00 0.00 3.06
2024 2810 3.074675 AGACGAGACTAGACACCACAT 57.925 47.619 0.00 0.00 0.00 3.21
2026 2812 3.126686 GGTAAGACGAGACTAGACACCAC 59.873 52.174 0.00 0.00 0.00 4.16
2030 2818 7.774157 AGAATAATGGTAAGACGAGACTAGACA 59.226 37.037 0.00 0.00 0.00 3.41
2031 2819 8.071368 CAGAATAATGGTAAGACGAGACTAGAC 58.929 40.741 0.00 0.00 0.00 2.59
2033 2821 7.932335 ACAGAATAATGGTAAGACGAGACTAG 58.068 38.462 0.00 0.00 0.00 2.57
2041 2829 8.324163 AGACAACAACAGAATAATGGTAAGAC 57.676 34.615 0.00 0.00 0.00 3.01
2042 2830 8.783093 CAAGACAACAACAGAATAATGGTAAGA 58.217 33.333 0.00 0.00 0.00 2.10
2043 2831 8.567948 ACAAGACAACAACAGAATAATGGTAAG 58.432 33.333 0.00 0.00 0.00 2.34
2046 2834 6.959639 ACAAGACAACAACAGAATAATGGT 57.040 33.333 0.00 0.00 0.00 3.55
2050 2838 6.201226 TGCAACAAGACAACAACAGAATAA 57.799 33.333 0.00 0.00 0.00 1.40
2054 2842 4.422840 CAATGCAACAAGACAACAACAGA 58.577 39.130 0.00 0.00 0.00 3.41
2055 2843 3.552699 CCAATGCAACAAGACAACAACAG 59.447 43.478 0.00 0.00 0.00 3.16
2056 2844 3.519579 CCAATGCAACAAGACAACAACA 58.480 40.909 0.00 0.00 0.00 3.33
2057 2845 2.865551 CCCAATGCAACAAGACAACAAC 59.134 45.455 0.00 0.00 0.00 3.32
2061 2849 3.663995 CATCCCAATGCAACAAGACAA 57.336 42.857 0.00 0.00 0.00 3.18
2072 2860 6.057533 TCTAACTTCATACTGCATCCCAATG 58.942 40.000 0.00 0.00 35.87 2.82
2073 2861 6.252599 TCTAACTTCATACTGCATCCCAAT 57.747 37.500 0.00 0.00 0.00 3.16
2074 2862 5.692115 TCTAACTTCATACTGCATCCCAA 57.308 39.130 0.00 0.00 0.00 4.12
2076 2864 5.059833 CCTTCTAACTTCATACTGCATCCC 58.940 45.833 0.00 0.00 0.00 3.85
2077 2865 5.059833 CCCTTCTAACTTCATACTGCATCC 58.940 45.833 0.00 0.00 0.00 3.51
2078 2866 5.918608 TCCCTTCTAACTTCATACTGCATC 58.081 41.667 0.00 0.00 0.00 3.91
2079 2867 5.957771 TCCCTTCTAACTTCATACTGCAT 57.042 39.130 0.00 0.00 0.00 3.96
2080 2868 5.957771 ATCCCTTCTAACTTCATACTGCA 57.042 39.130 0.00 0.00 0.00 4.41
2081 2869 6.823689 TCAAATCCCTTCTAACTTCATACTGC 59.176 38.462 0.00 0.00 0.00 4.40
2082 2870 8.669243 GTTCAAATCCCTTCTAACTTCATACTG 58.331 37.037 0.00 0.00 0.00 2.74
2083 2871 8.606830 AGTTCAAATCCCTTCTAACTTCATACT 58.393 33.333 0.00 0.00 0.00 2.12
2084 2872 8.794335 AGTTCAAATCCCTTCTAACTTCATAC 57.206 34.615 0.00 0.00 0.00 2.39
2085 2873 9.231297 CAAGTTCAAATCCCTTCTAACTTCATA 57.769 33.333 0.00 0.00 35.57 2.15
2086 2874 7.725844 ACAAGTTCAAATCCCTTCTAACTTCAT 59.274 33.333 0.00 0.00 35.57 2.57
2087 2875 7.060421 ACAAGTTCAAATCCCTTCTAACTTCA 58.940 34.615 0.00 0.00 35.57 3.02
2088 2876 7.511959 ACAAGTTCAAATCCCTTCTAACTTC 57.488 36.000 0.00 0.00 35.57 3.01
2089 2877 7.898014 AACAAGTTCAAATCCCTTCTAACTT 57.102 32.000 0.00 0.00 37.58 2.66
2090 2878 7.898014 AAACAAGTTCAAATCCCTTCTAACT 57.102 32.000 0.00 0.00 0.00 2.24
2091 2879 7.808381 GCTAAACAAGTTCAAATCCCTTCTAAC 59.192 37.037 0.00 0.00 0.00 2.34
2092 2880 7.724061 AGCTAAACAAGTTCAAATCCCTTCTAA 59.276 33.333 0.00 0.00 0.00 2.10
2093 2881 7.174946 CAGCTAAACAAGTTCAAATCCCTTCTA 59.825 37.037 0.00 0.00 0.00 2.10
2094 2882 6.015940 CAGCTAAACAAGTTCAAATCCCTTCT 60.016 38.462 0.00 0.00 0.00 2.85
2095 2883 6.016276 TCAGCTAAACAAGTTCAAATCCCTTC 60.016 38.462 0.00 0.00 0.00 3.46
2096 2884 5.833131 TCAGCTAAACAAGTTCAAATCCCTT 59.167 36.000 0.00 0.00 0.00 3.95
2097 2885 5.385198 TCAGCTAAACAAGTTCAAATCCCT 58.615 37.500 0.00 0.00 0.00 4.20
2098 2886 5.705609 TCAGCTAAACAAGTTCAAATCCC 57.294 39.130 0.00 0.00 0.00 3.85
2108 2896 4.320788 CCTTGAAGGCTTCAGCTAAACAAG 60.321 45.833 27.16 19.03 41.38 3.16
2117 2905 2.276732 TCCAACCTTGAAGGCTTCAG 57.723 50.000 27.16 19.88 39.63 3.02
2125 2913 4.714308 ACATTCCAAGTTTCCAACCTTGAA 59.286 37.500 0.00 0.00 0.00 2.69
2126 2914 4.285863 ACATTCCAAGTTTCCAACCTTGA 58.714 39.130 0.00 0.00 0.00 3.02
2127 2915 4.670896 ACATTCCAAGTTTCCAACCTTG 57.329 40.909 0.00 0.00 0.00 3.61
2128 2916 5.454966 ACTACATTCCAAGTTTCCAACCTT 58.545 37.500 0.00 0.00 0.00 3.50
2132 2920 7.335924 GCATAGTACTACATTCCAAGTTTCCAA 59.664 37.037 4.31 0.00 0.00 3.53
2134 2922 6.821665 TGCATAGTACTACATTCCAAGTTTCC 59.178 38.462 4.31 0.00 0.00 3.13
2135 2923 7.549488 ACTGCATAGTACTACATTCCAAGTTTC 59.451 37.037 4.31 0.00 34.74 2.78
2136 2924 7.394816 ACTGCATAGTACTACATTCCAAGTTT 58.605 34.615 4.31 0.00 34.74 2.66
2137 2925 6.947464 ACTGCATAGTACTACATTCCAAGTT 58.053 36.000 4.31 0.00 34.74 2.66
2138 2926 6.546428 ACTGCATAGTACTACATTCCAAGT 57.454 37.500 4.31 0.26 34.74 3.16
2139 2927 9.547753 AATTACTGCATAGTACTACATTCCAAG 57.452 33.333 4.31 0.00 39.06 3.61
2141 2929 9.325198 CAAATTACTGCATAGTACTACATTCCA 57.675 33.333 4.31 0.00 39.06 3.53
2142 2930 8.283291 GCAAATTACTGCATAGTACTACATTCC 58.717 37.037 4.31 0.00 42.17 3.01
2174 2972 6.571150 GCAGAGAGCAGTTAACCATGAAATTT 60.571 38.462 0.88 0.00 44.79 1.82
2176 2974 4.397417 GCAGAGAGCAGTTAACCATGAAAT 59.603 41.667 0.88 0.00 44.79 2.17
2177 2975 3.753272 GCAGAGAGCAGTTAACCATGAAA 59.247 43.478 0.88 0.00 44.79 2.69
2182 2980 0.670546 GCGCAGAGAGCAGTTAACCA 60.671 55.000 0.30 0.00 46.13 3.67
2184 2982 1.009389 ACGCGCAGAGAGCAGTTAAC 61.009 55.000 5.73 0.00 46.13 2.01
2185 2983 0.524414 TACGCGCAGAGAGCAGTTAA 59.476 50.000 5.73 0.00 46.13 2.01
2186 2984 0.098905 CTACGCGCAGAGAGCAGTTA 59.901 55.000 5.73 0.00 46.13 2.24
2187 2985 1.153939 CTACGCGCAGAGAGCAGTT 60.154 57.895 5.73 0.00 46.13 3.16
2188 2986 2.487428 CTACGCGCAGAGAGCAGT 59.513 61.111 5.73 0.00 46.13 4.40
2189 2987 2.278466 CCTACGCGCAGAGAGCAG 60.278 66.667 8.21 0.00 46.13 4.24
2190 2988 3.052620 GACCTACGCGCAGAGAGCA 62.053 63.158 8.21 0.00 46.13 4.26
2191 2989 2.278271 GACCTACGCGCAGAGAGC 60.278 66.667 8.21 0.00 40.87 4.09
2192 2990 2.023461 CGACCTACGCGCAGAGAG 59.977 66.667 8.21 0.00 34.51 3.20
2193 2991 1.859427 AAACGACCTACGCGCAGAGA 61.859 55.000 8.21 0.00 46.94 3.10
2194 2992 1.007336 AAAACGACCTACGCGCAGAG 61.007 55.000 8.21 2.91 46.94 3.35
2195 2993 1.005294 GAAAACGACCTACGCGCAGA 61.005 55.000 8.21 0.00 46.94 4.26
2196 2994 1.414897 GAAAACGACCTACGCGCAG 59.585 57.895 5.73 1.19 46.94 5.18
2213 3011 1.202639 ACAGAGGTGATTGCACAACGA 60.203 47.619 0.00 0.00 46.96 3.85
2214 3012 1.195448 GACAGAGGTGATTGCACAACG 59.805 52.381 0.00 0.00 46.96 4.10
2215 3013 2.498167 AGACAGAGGTGATTGCACAAC 58.502 47.619 0.00 0.00 46.96 3.32
2216 3014 2.936919 AGACAGAGGTGATTGCACAA 57.063 45.000 0.00 0.00 46.96 3.33
2227 3025 1.135046 CGATTGCGCATAGACAGAGG 58.865 55.000 12.75 0.00 0.00 3.69
2229 3027 3.113322 GTTACGATTGCGCATAGACAGA 58.887 45.455 12.75 0.00 42.48 3.41
2230 3028 2.857748 TGTTACGATTGCGCATAGACAG 59.142 45.455 12.75 2.39 42.48 3.51
2231 3029 2.857748 CTGTTACGATTGCGCATAGACA 59.142 45.455 12.75 9.89 42.48 3.41
2232 3030 2.347661 GCTGTTACGATTGCGCATAGAC 60.348 50.000 12.75 5.43 42.48 2.59
2233 3031 1.858458 GCTGTTACGATTGCGCATAGA 59.142 47.619 12.75 0.00 42.48 1.98
2234 3032 1.592543 TGCTGTTACGATTGCGCATAG 59.407 47.619 12.75 8.45 42.48 2.23
2235 3033 1.326245 GTGCTGTTACGATTGCGCATA 59.674 47.619 12.75 2.21 42.48 3.14
2236 3034 0.096976 GTGCTGTTACGATTGCGCAT 59.903 50.000 12.75 0.40 42.48 4.73
2237 3035 1.224722 TGTGCTGTTACGATTGCGCA 61.225 50.000 5.66 5.66 42.49 6.09
2238 3036 0.110419 TTGTGCTGTTACGATTGCGC 60.110 50.000 0.00 0.00 42.48 6.09
2239 3037 1.591248 GTTGTGCTGTTACGATTGCG 58.409 50.000 0.00 0.00 44.79 4.85
2240 3038 1.401018 GGGTTGTGCTGTTACGATTGC 60.401 52.381 0.00 0.00 0.00 3.56
2241 3039 1.199097 GGGGTTGTGCTGTTACGATTG 59.801 52.381 0.00 0.00 0.00 2.67
2242 3040 1.073284 AGGGGTTGTGCTGTTACGATT 59.927 47.619 0.00 0.00 0.00 3.34
2243 3041 0.690762 AGGGGTTGTGCTGTTACGAT 59.309 50.000 0.00 0.00 0.00 3.73
2244 3042 1.274167 CTAGGGGTTGTGCTGTTACGA 59.726 52.381 0.00 0.00 0.00 3.43
2245 3043 1.722011 CTAGGGGTTGTGCTGTTACG 58.278 55.000 0.00 0.00 0.00 3.18
2246 3044 1.450025 GCTAGGGGTTGTGCTGTTAC 58.550 55.000 0.00 0.00 0.00 2.50
2247 3045 0.326927 GGCTAGGGGTTGTGCTGTTA 59.673 55.000 0.00 0.00 0.00 2.41
2248 3046 1.074951 GGCTAGGGGTTGTGCTGTT 59.925 57.895 0.00 0.00 0.00 3.16
2249 3047 2.757077 GGCTAGGGGTTGTGCTGT 59.243 61.111 0.00 0.00 0.00 4.40
2250 3048 2.436646 CGGCTAGGGGTTGTGCTG 60.437 66.667 0.00 0.00 0.00 4.41
2251 3049 4.410400 GCGGCTAGGGGTTGTGCT 62.410 66.667 0.00 0.00 0.00 4.40
2252 3050 4.715523 TGCGGCTAGGGGTTGTGC 62.716 66.667 0.00 0.00 0.00 4.57
2253 3051 2.436646 CTGCGGCTAGGGGTTGTG 60.437 66.667 0.00 0.00 0.00 3.33
2254 3052 2.928396 ACTGCGGCTAGGGGTTGT 60.928 61.111 0.00 0.00 0.00 3.32
2255 3053 2.125106 GACTGCGGCTAGGGGTTG 60.125 66.667 0.00 0.00 0.00 3.77
2256 3054 3.771160 CGACTGCGGCTAGGGGTT 61.771 66.667 0.00 0.00 0.00 4.11
2273 3071 3.873883 GATCACCTGCAGCTGCGC 61.874 66.667 32.11 11.90 45.83 6.09
2274 3072 1.303799 AAAGATCACCTGCAGCTGCG 61.304 55.000 32.11 25.08 45.83 5.18
2275 3073 0.886563 AAAAGATCACCTGCAGCTGC 59.113 50.000 31.89 31.89 42.50 5.25
2276 3074 2.434428 AGAAAAGATCACCTGCAGCTG 58.566 47.619 10.11 10.11 0.00 4.24
2277 3075 2.875094 AGAAAAGATCACCTGCAGCT 57.125 45.000 8.66 0.00 0.00 4.24
2278 3076 3.930634 AAAGAAAAGATCACCTGCAGC 57.069 42.857 8.66 0.00 0.00 5.25
2279 3077 5.241506 TGGTTAAAGAAAAGATCACCTGCAG 59.758 40.000 6.78 6.78 0.00 4.41
2280 3078 5.009610 GTGGTTAAAGAAAAGATCACCTGCA 59.990 40.000 0.00 0.00 0.00 4.41
2281 3079 5.009610 TGTGGTTAAAGAAAAGATCACCTGC 59.990 40.000 0.00 0.00 0.00 4.85
2282 3080 6.633500 TGTGGTTAAAGAAAAGATCACCTG 57.367 37.500 0.00 0.00 0.00 4.00
2283 3081 7.004086 TGATGTGGTTAAAGAAAAGATCACCT 58.996 34.615 0.00 0.00 0.00 4.00
2284 3082 7.214467 TGATGTGGTTAAAGAAAAGATCACC 57.786 36.000 0.00 0.00 0.00 4.02
2305 3103 4.162320 ACAGTCCAACGGAACTGATATGAT 59.838 41.667 9.32 0.00 35.75 2.45
2307 3105 3.861840 ACAGTCCAACGGAACTGATATG 58.138 45.455 9.32 0.00 35.75 1.78
2308 3106 4.441634 GCTACAGTCCAACGGAACTGATAT 60.442 45.833 9.32 0.00 35.75 1.63
2319 3117 2.826725 AGAGTACAGGCTACAGTCCAAC 59.173 50.000 0.00 0.00 0.00 3.77
2322 3120 2.685897 CAGAGAGTACAGGCTACAGTCC 59.314 54.545 0.00 0.00 0.00 3.85
2330 3128 3.003897 CGATAGAACCAGAGAGTACAGGC 59.996 52.174 0.00 0.00 39.76 4.85
2347 3145 9.026074 GGAAGAGAAGATTCACTTTAACGATAG 57.974 37.037 6.70 0.00 38.05 2.08
2391 3194 0.109781 CGTTGGGATTGCACGGAAAG 60.110 55.000 0.00 0.00 0.00 2.62
2392 3195 1.953017 CGTTGGGATTGCACGGAAA 59.047 52.632 0.00 0.00 0.00 3.13
2393 3196 2.622011 GCGTTGGGATTGCACGGAA 61.622 57.895 0.00 0.00 34.42 4.30
2436 3239 6.560253 TTTGTTAGAGAAGCAGAATTGGTC 57.440 37.500 0.00 0.00 32.95 4.02
2474 3277 9.529325 GGTTTACTTTTACTTGCATTCTTTCTT 57.471 29.630 0.00 0.00 0.00 2.52
2475 3278 8.691797 TGGTTTACTTTTACTTGCATTCTTTCT 58.308 29.630 0.00 0.00 0.00 2.52
2476 3279 8.865590 TGGTTTACTTTTACTTGCATTCTTTC 57.134 30.769 0.00 0.00 0.00 2.62
2477 3280 9.830975 AATGGTTTACTTTTACTTGCATTCTTT 57.169 25.926 0.00 0.00 0.00 2.52
2478 3281 9.830975 AAATGGTTTACTTTTACTTGCATTCTT 57.169 25.926 0.00 0.00 0.00 2.52
2479 3282 9.260002 CAAATGGTTTACTTTTACTTGCATTCT 57.740 29.630 0.00 0.00 0.00 2.40
2540 3344 7.010160 TCCATTTTACCTTTCTGAACCATCTT 58.990 34.615 0.00 0.00 0.00 2.40
2557 3361 5.221621 CCCAGCTTTTCCAGTTTCCATTTTA 60.222 40.000 0.00 0.00 0.00 1.52
2561 3365 2.250924 CCCAGCTTTTCCAGTTTCCAT 58.749 47.619 0.00 0.00 0.00 3.41
2597 3401 1.949847 ATTCTCCGTCTCCGTGGCAG 61.950 60.000 0.00 0.00 0.00 4.85
2598 3402 1.945354 GATTCTCCGTCTCCGTGGCA 61.945 60.000 0.00 0.00 0.00 4.92
2599 3403 1.227002 GATTCTCCGTCTCCGTGGC 60.227 63.158 0.00 0.00 0.00 5.01
2601 3405 3.928343 GAGATTCTCCGTCTCCGTG 57.072 57.895 1.97 0.00 36.87 4.94
2649 3679 0.593128 ACTTGCTCACAAACGCCATC 59.407 50.000 0.00 0.00 34.74 3.51
2653 3683 2.005537 CGCACTTGCTCACAAACGC 61.006 57.895 0.00 0.00 39.32 4.84
2664 3694 1.667830 ACATGACGACCCGCACTTG 60.668 57.895 0.00 0.00 0.00 3.16
2673 3703 4.219033 GTTTCCAAATCACACATGACGAC 58.781 43.478 0.00 0.00 37.79 4.34
2695 3725 4.911610 CGGAACAGTAAAATCAAGTGCTTG 59.088 41.667 5.63 5.63 41.71 4.01
2697 3727 4.385825 TCGGAACAGTAAAATCAAGTGCT 58.614 39.130 0.00 0.00 0.00 4.40
2698 3728 4.742438 TCGGAACAGTAAAATCAAGTGC 57.258 40.909 0.00 0.00 0.00 4.40
2699 3729 7.979115 TTTTTCGGAACAGTAAAATCAAGTG 57.021 32.000 0.00 0.00 0.00 3.16
2722 3752 5.293324 GCCACCATTTTCTTTTCTCGTTTTT 59.707 36.000 0.00 0.00 0.00 1.94
2723 3753 4.808895 GCCACCATTTTCTTTTCTCGTTTT 59.191 37.500 0.00 0.00 0.00 2.43
2739 3769 1.005097 TCAGAGCTCAATTGCCACCAT 59.995 47.619 17.77 0.00 0.00 3.55
2740 3770 0.401356 TCAGAGCTCAATTGCCACCA 59.599 50.000 17.77 0.00 0.00 4.17
2761 3791 6.035005 GCTTTTTCAGGTTTCAGTTTCTTCAC 59.965 38.462 0.00 0.00 0.00 3.18
2765 3795 5.654497 CAGCTTTTTCAGGTTTCAGTTTCT 58.346 37.500 0.00 0.00 0.00 2.52
2770 3800 2.223572 ACGCAGCTTTTTCAGGTTTCAG 60.224 45.455 0.00 0.00 0.00 3.02
2771 3801 1.748493 ACGCAGCTTTTTCAGGTTTCA 59.252 42.857 0.00 0.00 0.00 2.69
2815 4469 3.185246 TGGAAATCGGAGAGAATGCTC 57.815 47.619 0.00 0.00 43.63 4.26
2816 4470 3.853355 ATGGAAATCGGAGAGAATGCT 57.147 42.857 0.00 0.00 43.63 3.79
2817 4471 6.377327 TTTAATGGAAATCGGAGAGAATGC 57.623 37.500 0.00 0.00 43.63 3.56
2818 4472 8.213518 TCTTTTAATGGAAATCGGAGAGAATG 57.786 34.615 0.00 0.00 43.63 2.67
2819 4473 8.807948 TTCTTTTAATGGAAATCGGAGAGAAT 57.192 30.769 0.00 0.00 43.63 2.40
2820 4474 8.630054 TTTCTTTTAATGGAAATCGGAGAGAA 57.370 30.769 0.98 0.00 43.63 2.87
2829 4483 9.657419 GACATGGTGATTTCTTTTAATGGAAAT 57.343 29.630 12.79 12.79 42.53 2.17
2830 4484 8.869109 AGACATGGTGATTTCTTTTAATGGAAA 58.131 29.630 0.00 6.03 36.17 3.13
2831 4485 8.421249 AGACATGGTGATTTCTTTTAATGGAA 57.579 30.769 0.00 0.00 0.00 3.53
2832 4486 8.421249 AAGACATGGTGATTTCTTTTAATGGA 57.579 30.769 0.00 0.00 26.00 3.41
2833 4487 9.573133 GTAAGACATGGTGATTTCTTTTAATGG 57.427 33.333 0.00 0.00 32.12 3.16
2838 4492 8.918202 TGTAGTAAGACATGGTGATTTCTTTT 57.082 30.769 0.00 0.00 32.12 2.27
2839 4493 8.375506 TCTGTAGTAAGACATGGTGATTTCTTT 58.624 33.333 0.00 0.00 32.12 2.52
2840 4494 7.907389 TCTGTAGTAAGACATGGTGATTTCTT 58.093 34.615 0.00 0.00 33.89 2.52
2841 4495 7.482169 TCTGTAGTAAGACATGGTGATTTCT 57.518 36.000 0.00 0.00 0.00 2.52
2842 4496 6.256757 GCTCTGTAGTAAGACATGGTGATTTC 59.743 42.308 0.00 0.00 0.00 2.17
2844 4498 5.187772 TGCTCTGTAGTAAGACATGGTGATT 59.812 40.000 0.00 0.00 0.00 2.57
2848 4502 4.344978 TCTGCTCTGTAGTAAGACATGGT 58.655 43.478 0.00 0.00 0.00 3.55
2851 4505 6.661377 TCTCTTTCTGCTCTGTAGTAAGACAT 59.339 38.462 1.99 0.00 31.39 3.06
2852 4506 6.004574 TCTCTTTCTGCTCTGTAGTAAGACA 58.995 40.000 1.99 0.00 31.39 3.41
2853 4507 6.503589 TCTCTTTCTGCTCTGTAGTAAGAC 57.496 41.667 1.99 0.00 31.39 3.01
2855 4509 7.375053 AGTTTCTCTTTCTGCTCTGTAGTAAG 58.625 38.462 0.00 0.00 0.00 2.34
2856 4510 7.291411 AGTTTCTCTTTCTGCTCTGTAGTAA 57.709 36.000 0.00 0.00 0.00 2.24
2857 4511 6.902771 AGTTTCTCTTTCTGCTCTGTAGTA 57.097 37.500 0.00 0.00 0.00 1.82
2858 4512 5.799827 AGTTTCTCTTTCTGCTCTGTAGT 57.200 39.130 0.00 0.00 0.00 2.73
2859 4513 8.594881 TTTTAGTTTCTCTTTCTGCTCTGTAG 57.405 34.615 0.00 0.00 0.00 2.74
2861 4515 7.225734 GTCTTTTAGTTTCTCTTTCTGCTCTGT 59.774 37.037 0.00 0.00 0.00 3.41
2863 4517 7.275920 TGTCTTTTAGTTTCTCTTTCTGCTCT 58.724 34.615 0.00 0.00 0.00 4.09
2864 4518 7.484035 TGTCTTTTAGTTTCTCTTTCTGCTC 57.516 36.000 0.00 0.00 0.00 4.26
2865 4519 7.865706 TTGTCTTTTAGTTTCTCTTTCTGCT 57.134 32.000 0.00 0.00 0.00 4.24
2866 4520 7.166638 GCTTTGTCTTTTAGTTTCTCTTTCTGC 59.833 37.037 0.00 0.00 0.00 4.26
2867 4521 8.184192 TGCTTTGTCTTTTAGTTTCTCTTTCTG 58.816 33.333 0.00 0.00 0.00 3.02
2868 4522 8.281212 TGCTTTGTCTTTTAGTTTCTCTTTCT 57.719 30.769 0.00 0.00 0.00 2.52
2871 4525 9.952188 GTTATGCTTTGTCTTTTAGTTTCTCTT 57.048 29.630 0.00 0.00 0.00 2.85
2872 4526 9.120538 TGTTATGCTTTGTCTTTTAGTTTCTCT 57.879 29.630 0.00 0.00 0.00 3.10
2873 4527 9.170584 GTGTTATGCTTTGTCTTTTAGTTTCTC 57.829 33.333 0.00 0.00 0.00 2.87
2874 4528 8.903820 AGTGTTATGCTTTGTCTTTTAGTTTCT 58.096 29.630 0.00 0.00 0.00 2.52
2875 4529 9.170584 GAGTGTTATGCTTTGTCTTTTAGTTTC 57.829 33.333 0.00 0.00 0.00 2.78
2876 4530 8.135529 GGAGTGTTATGCTTTGTCTTTTAGTTT 58.864 33.333 0.00 0.00 0.00 2.66
2877 4531 7.284489 TGGAGTGTTATGCTTTGTCTTTTAGTT 59.716 33.333 0.00 0.00 0.00 2.24
2878 4532 6.770785 TGGAGTGTTATGCTTTGTCTTTTAGT 59.229 34.615 0.00 0.00 0.00 2.24
2879 4533 7.041098 AGTGGAGTGTTATGCTTTGTCTTTTAG 60.041 37.037 0.00 0.00 0.00 1.85
2880 4534 6.770785 AGTGGAGTGTTATGCTTTGTCTTTTA 59.229 34.615 0.00 0.00 0.00 1.52
2881 4535 5.594317 AGTGGAGTGTTATGCTTTGTCTTTT 59.406 36.000 0.00 0.00 0.00 2.27
2882 4536 5.133221 AGTGGAGTGTTATGCTTTGTCTTT 58.867 37.500 0.00 0.00 0.00 2.52
2883 4537 4.718961 AGTGGAGTGTTATGCTTTGTCTT 58.281 39.130 0.00 0.00 0.00 3.01
2884 4538 4.319177 GAGTGGAGTGTTATGCTTTGTCT 58.681 43.478 0.00 0.00 0.00 3.41
2885 4539 3.437049 GGAGTGGAGTGTTATGCTTTGTC 59.563 47.826 0.00 0.00 0.00 3.18
2886 4540 3.412386 GGAGTGGAGTGTTATGCTTTGT 58.588 45.455 0.00 0.00 0.00 2.83
2887 4541 2.749621 GGGAGTGGAGTGTTATGCTTTG 59.250 50.000 0.00 0.00 0.00 2.77
2888 4542 2.290960 GGGGAGTGGAGTGTTATGCTTT 60.291 50.000 0.00 0.00 0.00 3.51
2889 4543 1.282157 GGGGAGTGGAGTGTTATGCTT 59.718 52.381 0.00 0.00 0.00 3.91
2890 4544 0.912486 GGGGAGTGGAGTGTTATGCT 59.088 55.000 0.00 0.00 0.00 3.79
2891 4545 0.912486 AGGGGAGTGGAGTGTTATGC 59.088 55.000 0.00 0.00 0.00 3.14
2893 4547 2.024655 TCGTAGGGGAGTGGAGTGTTAT 60.025 50.000 0.00 0.00 0.00 1.89
2894 4548 1.355381 TCGTAGGGGAGTGGAGTGTTA 59.645 52.381 0.00 0.00 0.00 2.41
2895 4549 0.113776 TCGTAGGGGAGTGGAGTGTT 59.886 55.000 0.00 0.00 0.00 3.32
2896 4550 0.113776 TTCGTAGGGGAGTGGAGTGT 59.886 55.000 0.00 0.00 0.00 3.55
2899 4553 3.055385 TGAAAATTCGTAGGGGAGTGGAG 60.055 47.826 0.00 0.00 0.00 3.86
2900 4554 2.907696 TGAAAATTCGTAGGGGAGTGGA 59.092 45.455 0.00 0.00 0.00 4.02
2901 4555 3.343941 TGAAAATTCGTAGGGGAGTGG 57.656 47.619 0.00 0.00 0.00 4.00
2904 4558 4.440112 GGCAATTGAAAATTCGTAGGGGAG 60.440 45.833 10.34 0.00 0.00 4.30
2907 4561 4.448537 TGGCAATTGAAAATTCGTAGGG 57.551 40.909 10.34 0.00 0.00 3.53
2908 4562 5.925969 AGTTTGGCAATTGAAAATTCGTAGG 59.074 36.000 10.34 0.00 0.00 3.18
2909 4563 8.514136 TTAGTTTGGCAATTGAAAATTCGTAG 57.486 30.769 10.34 0.00 0.00 3.51
2911 4565 6.423604 CCTTAGTTTGGCAATTGAAAATTCGT 59.576 34.615 10.34 0.00 0.00 3.85
2912 4566 6.644592 TCCTTAGTTTGGCAATTGAAAATTCG 59.355 34.615 10.34 1.93 0.00 3.34
2913 4567 7.961325 TCCTTAGTTTGGCAATTGAAAATTC 57.039 32.000 10.34 0.00 0.00 2.17
2914 4568 7.445096 CCTTCCTTAGTTTGGCAATTGAAAATT 59.555 33.333 10.34 8.23 0.00 1.82
2915 4569 6.936335 CCTTCCTTAGTTTGGCAATTGAAAAT 59.064 34.615 10.34 3.77 0.00 1.82
2920 4574 4.082026 CCTCCTTCCTTAGTTTGGCAATTG 60.082 45.833 0.00 0.00 0.00 2.32
2921 4575 4.089361 CCTCCTTCCTTAGTTTGGCAATT 58.911 43.478 0.00 0.00 0.00 2.32
2922 4576 3.333680 TCCTCCTTCCTTAGTTTGGCAAT 59.666 43.478 0.00 0.00 0.00 3.56
2923 4577 2.714250 TCCTCCTTCCTTAGTTTGGCAA 59.286 45.455 0.00 0.00 0.00 4.52
2924 4578 2.344592 TCCTCCTTCCTTAGTTTGGCA 58.655 47.619 0.00 0.00 0.00 4.92
2925 4579 3.434940 TTCCTCCTTCCTTAGTTTGGC 57.565 47.619 0.00 0.00 0.00 4.52


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.