Multiple sequence alignment - TraesCS2A01G194900

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS2A01G194900 chr2A 100.000 3717 0 0 1 3717 164706446 164702730 0.000000e+00 6865.0
1 TraesCS2A01G194900 chr2A 100.000 151 0 0 371 521 79160660 79160810 2.830000e-71 279.0
2 TraesCS2A01G194900 chr2B 89.106 3222 147 73 587 3708 195528941 195532058 0.000000e+00 3818.0
3 TraesCS2A01G194900 chr2B 100.000 151 0 0 371 521 660118875 660118725 2.830000e-71 279.0
4 TraesCS2A01G194900 chr2B 100.000 150 0 0 372 521 446110744 446110893 1.020000e-70 278.0
5 TraesCS2A01G194900 chr2B 98.701 154 1 1 372 524 592764983 592765136 4.730000e-69 272.0
6 TraesCS2A01G194900 chr2B 100.000 40 0 0 521 560 195521765 195521804 1.430000e-09 75.0
7 TraesCS2A01G194900 chr2D 92.830 2357 93 38 557 2878 136831273 136833588 0.000000e+00 3347.0
8 TraesCS2A01G194900 chr2D 86.911 382 18 13 1 373 136830860 136831218 2.080000e-107 399.0
9 TraesCS2A01G194900 chr2D 84.194 310 9 14 3418 3708 136834138 136834426 7.920000e-67 265.0
10 TraesCS2A01G194900 chr2D 100.000 40 0 0 521 560 136831211 136831250 1.430000e-09 75.0
11 TraesCS2A01G194900 chr4A 81.420 479 83 6 2074 2549 546211420 546211895 1.620000e-103 387.0
12 TraesCS2A01G194900 chr4A 77.657 367 66 9 1624 1988 546210960 546211312 3.760000e-50 209.0
13 TraesCS2A01G194900 chr4A 73.312 311 59 18 1220 1528 546210287 546210575 3.950000e-15 93.5
14 TraesCS2A01G194900 chr4D 82.028 434 74 4 2118 2549 50770604 50770173 2.110000e-97 366.0
15 TraesCS2A01G194900 chr4D 78.689 366 64 6 1624 1988 50771110 50770758 8.030000e-57 231.0
16 TraesCS2A01G194900 chr4D 82.407 108 15 4 1423 1528 50771610 50771505 1.420000e-14 91.6
17 TraesCS2A01G194900 chr4B 81.336 434 77 4 2118 2549 74681863 74681432 2.120000e-92 350.0
18 TraesCS2A01G194900 chr4B 77.112 367 68 9 1624 1988 74682362 74682010 8.140000e-47 198.0
19 TraesCS2A01G194900 chr4B 81.481 108 16 4 1423 1528 74682867 74682762 6.610000e-13 86.1
20 TraesCS2A01G194900 chr3D 100.000 151 0 0 371 521 302270406 302270556 2.830000e-71 279.0
21 TraesCS2A01G194900 chr3D 75.132 189 40 6 2142 2326 414627690 414627505 8.560000e-12 82.4
22 TraesCS2A01G194900 chrUn 99.351 154 0 1 372 524 329904438 329904285 1.020000e-70 278.0
23 TraesCS2A01G194900 chrUn 99.351 154 0 1 372 524 469987616 469987769 1.020000e-70 278.0
24 TraesCS2A01G194900 chr7A 100.000 150 0 0 372 521 734351583 734351434 1.020000e-70 278.0
25 TraesCS2A01G194900 chr3A 98.675 151 2 0 371 521 216095135 216094985 6.120000e-68 268.0
26 TraesCS2A01G194900 chr3B 75.132 189 40 6 2142 2326 540455246 540455061 8.560000e-12 82.4


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS2A01G194900 chr2A 164702730 164706446 3716 True 6865.000000 6865 100.000000 1 3717 1 chr2A.!!$R1 3716
1 TraesCS2A01G194900 chr2B 195528941 195532058 3117 False 3818.000000 3818 89.106000 587 3708 1 chr2B.!!$F2 3121
2 TraesCS2A01G194900 chr2D 136830860 136834426 3566 False 1021.500000 3347 90.983750 1 3708 4 chr2D.!!$F1 3707
3 TraesCS2A01G194900 chr4A 546210287 546211895 1608 False 229.833333 387 77.463000 1220 2549 3 chr4A.!!$F1 1329
4 TraesCS2A01G194900 chr4D 50770173 50771610 1437 True 229.533333 366 81.041333 1423 2549 3 chr4D.!!$R1 1126
5 TraesCS2A01G194900 chr4B 74681432 74682867 1435 True 211.366667 350 79.976333 1423 2549 3 chr4B.!!$R1 1126

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
452 461 0.030504 TGCATGCGTTGGACAAAGTG 59.969 50.0 14.09 0.0 0.0 3.16 F
889 961 0.036010 CCTCACATCTTTCCGCCACT 60.036 55.0 0.00 0.0 0.0 4.00 F
891 963 0.036388 TCACATCTTTCCGCCACTCC 60.036 55.0 0.00 0.0 0.0 3.85 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1601 1930 0.036022 AGTTCCCAGAGCAGTCAAGC 59.964 55.0 0.0 0.0 0.00 4.01 R
2128 2589 0.038159 CGCCGTTCACCTTCTTCTCT 60.038 55.0 0.0 0.0 0.00 3.10 R
2779 3252 0.040351 TCTCTACCAGCAGGCAGACT 59.960 55.0 0.0 0.0 39.06 3.24 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
20 21 0.808453 AACGGCATCGGTACCATTCG 60.808 55.000 13.54 10.21 41.39 3.34
41 42 2.676471 GCGGTTGCAGGGAATGGT 60.676 61.111 0.00 0.00 42.15 3.55
42 43 1.377987 GCGGTTGCAGGGAATGGTA 60.378 57.895 0.00 0.00 42.15 3.25
43 44 0.751643 GCGGTTGCAGGGAATGGTAT 60.752 55.000 0.00 0.00 42.15 2.73
45 46 2.925724 CGGTTGCAGGGAATGGTATTA 58.074 47.619 0.00 0.00 0.00 0.98
46 47 2.878406 CGGTTGCAGGGAATGGTATTAG 59.122 50.000 0.00 0.00 0.00 1.73
47 48 2.623416 GGTTGCAGGGAATGGTATTAGC 59.377 50.000 0.00 0.00 0.00 3.09
49 50 1.488812 TGCAGGGAATGGTATTAGCGT 59.511 47.619 0.00 0.00 0.00 5.07
50 51 2.092646 TGCAGGGAATGGTATTAGCGTT 60.093 45.455 0.05 0.05 0.00 4.84
51 52 2.949644 GCAGGGAATGGTATTAGCGTTT 59.050 45.455 2.11 0.00 0.00 3.60
52 53 4.131596 GCAGGGAATGGTATTAGCGTTTA 58.868 43.478 2.11 0.00 0.00 2.01
53 54 4.213482 GCAGGGAATGGTATTAGCGTTTAG 59.787 45.833 2.11 0.00 0.00 1.85
74 75 1.065926 CAGGAGTACTTGCAGATGCCA 60.066 52.381 0.00 0.00 41.18 4.92
95 96 4.919754 CCATTTCTTTTCCTCAAAGCTTCG 59.080 41.667 0.00 0.00 41.72 3.79
96 97 5.278463 CCATTTCTTTTCCTCAAAGCTTCGA 60.278 40.000 0.00 0.00 41.72 3.71
98 99 4.813296 TCTTTTCCTCAAAGCTTCGAAC 57.187 40.909 0.00 0.00 41.72 3.95
139 140 3.181494 TGTTATTAGCAGCAGCAGCATTG 60.181 43.478 12.92 0.00 45.49 2.82
140 141 1.758936 ATTAGCAGCAGCAGCATTGA 58.241 45.000 12.92 0.00 45.49 2.57
141 142 1.758936 TTAGCAGCAGCAGCATTGAT 58.241 45.000 12.92 0.00 45.49 2.57
142 143 1.758936 TAGCAGCAGCAGCATTGATT 58.241 45.000 12.92 0.00 45.49 2.57
164 165 0.948678 TTTCGAAAGGGAAGGCAACG 59.051 50.000 6.47 0.00 46.39 4.10
192 198 0.813210 GAGCCCTGAATCAAGGAGCG 60.813 60.000 1.31 0.00 40.02 5.03
193 199 1.078143 GCCCTGAATCAAGGAGCGT 60.078 57.895 1.31 0.00 40.02 5.07
194 200 1.372087 GCCCTGAATCAAGGAGCGTG 61.372 60.000 1.31 0.00 40.02 5.34
195 201 1.372087 CCCTGAATCAAGGAGCGTGC 61.372 60.000 0.00 0.00 40.02 5.34
196 202 1.699656 CCTGAATCAAGGAGCGTGCG 61.700 60.000 0.00 0.00 40.02 5.34
216 225 1.502231 GCATGCCGACTAACATCGAT 58.498 50.000 6.36 0.00 45.13 3.59
240 249 0.106918 ACGGACCCTGAAGTTTTGCA 60.107 50.000 0.00 0.00 0.00 4.08
242 251 0.673985 GGACCCTGAAGTTTTGCACC 59.326 55.000 0.00 0.00 0.00 5.01
296 305 7.391148 ACACATCACATTTAGTCATTTACCC 57.609 36.000 0.00 0.00 0.00 3.69
317 326 2.204228 TACCCACTGCCCCCACAT 60.204 61.111 0.00 0.00 0.00 3.21
355 364 3.199880 GCATGTAGCAATACCACTCCT 57.800 47.619 0.00 0.00 44.79 3.69
357 366 4.058817 GCATGTAGCAATACCACTCCTAC 58.941 47.826 0.00 0.00 44.79 3.18
359 368 5.743130 GCATGTAGCAATACCACTCCTACAT 60.743 44.000 5.94 5.94 45.51 2.29
360 369 5.276461 TGTAGCAATACCACTCCTACATG 57.724 43.478 0.00 0.00 34.96 3.21
361 370 4.959839 TGTAGCAATACCACTCCTACATGA 59.040 41.667 0.00 0.00 34.96 3.07
362 371 5.423931 TGTAGCAATACCACTCCTACATGAA 59.576 40.000 0.00 0.00 34.96 2.57
363 372 5.435686 AGCAATACCACTCCTACATGAAA 57.564 39.130 0.00 0.00 0.00 2.69
364 373 5.815581 AGCAATACCACTCCTACATGAAAA 58.184 37.500 0.00 0.00 0.00 2.29
365 374 5.882557 AGCAATACCACTCCTACATGAAAAG 59.117 40.000 0.00 0.00 0.00 2.27
366 375 5.880332 GCAATACCACTCCTACATGAAAAGA 59.120 40.000 0.00 0.00 0.00 2.52
367 376 6.374333 GCAATACCACTCCTACATGAAAAGAA 59.626 38.462 0.00 0.00 0.00 2.52
368 377 7.094377 GCAATACCACTCCTACATGAAAAGAAA 60.094 37.037 0.00 0.00 0.00 2.52
369 378 7.923414 ATACCACTCCTACATGAAAAGAAAC 57.077 36.000 0.00 0.00 0.00 2.78
370 379 5.690865 ACCACTCCTACATGAAAAGAAACA 58.309 37.500 0.00 0.00 0.00 2.83
371 380 5.531287 ACCACTCCTACATGAAAAGAAACAC 59.469 40.000 0.00 0.00 0.00 3.32
372 381 5.530915 CCACTCCTACATGAAAAGAAACACA 59.469 40.000 0.00 0.00 0.00 3.72
373 382 6.293626 CCACTCCTACATGAAAAGAAACACAG 60.294 42.308 0.00 0.00 0.00 3.66
374 383 6.260936 CACTCCTACATGAAAAGAAACACAGT 59.739 38.462 0.00 0.00 0.00 3.55
375 384 6.260936 ACTCCTACATGAAAAGAAACACAGTG 59.739 38.462 0.00 0.00 0.00 3.66
376 385 6.119536 TCCTACATGAAAAGAAACACAGTGT 58.880 36.000 0.00 0.00 0.00 3.55
377 386 6.601613 TCCTACATGAAAAGAAACACAGTGTT 59.398 34.615 13.53 13.53 43.41 3.32
378 387 6.692681 CCTACATGAAAAGAAACACAGTGTTG 59.307 38.462 19.84 7.15 40.14 3.33
379 388 4.864247 ACATGAAAAGAAACACAGTGTTGC 59.136 37.500 19.84 17.87 40.14 4.17
381 390 5.888691 TGAAAAGAAACACAGTGTTGCTA 57.111 34.783 24.99 8.74 45.23 3.49
382 391 6.449635 TGAAAAGAAACACAGTGTTGCTAT 57.550 33.333 24.99 17.47 45.23 2.97
383 392 7.561021 TGAAAAGAAACACAGTGTTGCTATA 57.439 32.000 24.99 10.57 45.23 1.31
384 393 7.414436 TGAAAAGAAACACAGTGTTGCTATAC 58.586 34.615 24.99 18.19 45.23 1.47
385 394 6.935741 AAAGAAACACAGTGTTGCTATACA 57.064 33.333 24.99 0.00 45.23 2.29
386 395 5.924475 AGAAACACAGTGTTGCTATACAC 57.076 39.130 23.74 6.97 44.18 2.90
387 396 5.364778 AGAAACACAGTGTTGCTATACACA 58.635 37.500 23.74 0.00 44.18 3.72
388 397 5.236478 AGAAACACAGTGTTGCTATACACAC 59.764 40.000 23.74 4.79 44.18 3.82
389 398 7.929418 AGAAACACAGTGTTGCTATACACACG 61.929 42.308 23.74 10.60 44.18 4.49
390 399 9.966700 AGAAACACAGTGTTGCTATACACACGA 62.967 40.741 23.74 0.00 44.18 4.35
393 402 3.700130 GTGTTGCTATACACACGACAC 57.300 47.619 10.93 0.00 46.00 3.67
394 403 3.314553 GTGTTGCTATACACACGACACT 58.685 45.455 10.93 0.00 46.00 3.55
395 404 3.121279 GTGTTGCTATACACACGACACTG 59.879 47.826 10.93 0.00 46.00 3.66
396 405 2.647529 TGCTATACACACGACACTGG 57.352 50.000 0.00 0.00 0.00 4.00
397 406 1.203758 TGCTATACACACGACACTGGG 59.796 52.381 0.00 0.00 0.00 4.45
398 407 1.203994 GCTATACACACGACACTGGGT 59.796 52.381 0.00 0.00 0.00 4.51
399 408 2.424601 GCTATACACACGACACTGGGTA 59.575 50.000 0.00 0.00 34.50 3.69
400 409 3.488721 GCTATACACACGACACTGGGTAG 60.489 52.174 0.00 0.00 33.48 3.18
401 410 0.599558 TACACACGACACTGGGTAGC 59.400 55.000 0.00 0.00 0.00 3.58
402 411 1.374252 CACACGACACTGGGTAGCC 60.374 63.158 3.29 3.29 0.00 3.93
403 412 2.126071 CACGACACTGGGTAGCCG 60.126 66.667 6.45 3.90 0.00 5.52
404 413 2.282674 ACGACACTGGGTAGCCGA 60.283 61.111 6.45 0.00 0.00 5.54
405 414 1.681327 ACGACACTGGGTAGCCGAT 60.681 57.895 6.45 0.00 0.00 4.18
406 415 1.255667 ACGACACTGGGTAGCCGATT 61.256 55.000 6.45 0.00 0.00 3.34
407 416 0.108329 CGACACTGGGTAGCCGATTT 60.108 55.000 6.45 0.00 0.00 2.17
408 417 1.369625 GACACTGGGTAGCCGATTTG 58.630 55.000 6.45 3.11 0.00 2.32
409 418 0.676782 ACACTGGGTAGCCGATTTGC 60.677 55.000 6.45 0.00 0.00 3.68
410 419 1.449601 ACTGGGTAGCCGATTTGCG 60.450 57.895 6.45 0.00 40.47 4.85
411 420 2.822255 TGGGTAGCCGATTTGCGC 60.822 61.111 6.45 0.00 39.11 6.09
412 421 2.822255 GGGTAGCCGATTTGCGCA 60.822 61.111 5.66 5.66 39.11 6.09
413 422 2.403586 GGTAGCCGATTTGCGCAC 59.596 61.111 11.12 0.00 39.11 5.34
414 423 2.021380 GTAGCCGATTTGCGCACG 59.979 61.111 11.12 11.37 39.11 5.34
415 424 2.125872 TAGCCGATTTGCGCACGA 60.126 55.556 19.05 7.77 39.11 4.35
416 425 1.520564 TAGCCGATTTGCGCACGAT 60.521 52.632 19.05 12.37 39.11 3.73
417 426 1.487452 TAGCCGATTTGCGCACGATC 61.487 55.000 19.05 18.70 39.11 3.69
418 427 2.053984 CCGATTTGCGCACGATCG 60.054 61.111 32.39 32.39 41.57 3.69
431 440 2.663188 GATCGCACTGATCCGGCC 60.663 66.667 0.00 0.00 46.55 6.13
432 441 4.592192 ATCGCACTGATCCGGCCG 62.592 66.667 21.04 21.04 28.49 6.13
436 445 4.758251 CACTGATCCGGCCGTGCA 62.758 66.667 26.12 17.29 0.00 4.57
437 446 3.785859 ACTGATCCGGCCGTGCAT 61.786 61.111 26.12 12.99 0.00 3.96
438 447 3.274586 CTGATCCGGCCGTGCATG 61.275 66.667 26.12 8.39 0.00 4.06
446 455 4.759096 GCCGTGCATGCGTTGGAC 62.759 66.667 22.44 10.40 42.80 4.02
447 456 3.353029 CCGTGCATGCGTTGGACA 61.353 61.111 14.09 0.00 46.27 4.02
448 457 2.636462 CGTGCATGCGTTGGACAA 59.364 55.556 14.09 0.00 46.27 3.18
449 458 1.009108 CGTGCATGCGTTGGACAAA 60.009 52.632 14.09 0.00 46.27 2.83
450 459 0.998226 CGTGCATGCGTTGGACAAAG 60.998 55.000 14.09 0.00 46.27 2.77
451 460 0.030638 GTGCATGCGTTGGACAAAGT 59.969 50.000 14.09 0.00 45.35 2.66
452 461 0.030504 TGCATGCGTTGGACAAAGTG 59.969 50.000 14.09 0.00 0.00 3.16
453 462 0.664166 GCATGCGTTGGACAAAGTGG 60.664 55.000 0.00 0.00 0.00 4.00
454 463 0.950836 CATGCGTTGGACAAAGTGGA 59.049 50.000 0.37 0.00 0.00 4.02
455 464 1.069022 CATGCGTTGGACAAAGTGGAG 60.069 52.381 0.37 0.00 0.00 3.86
456 465 0.817634 TGCGTTGGACAAAGTGGAGG 60.818 55.000 0.37 0.00 0.00 4.30
457 466 1.949257 CGTTGGACAAAGTGGAGGC 59.051 57.895 0.00 0.00 0.00 4.70
458 467 1.515521 CGTTGGACAAAGTGGAGGCC 61.516 60.000 0.00 0.00 0.00 5.19
459 468 0.467290 GTTGGACAAAGTGGAGGCCA 60.467 55.000 5.01 0.00 0.00 5.36
460 469 0.178992 TTGGACAAAGTGGAGGCCAG 60.179 55.000 5.01 0.00 32.34 4.85
461 470 1.973812 GGACAAAGTGGAGGCCAGC 60.974 63.158 5.01 0.00 32.34 4.85
462 471 2.281761 ACAAAGTGGAGGCCAGCG 60.282 61.111 5.01 0.00 32.34 5.18
463 472 3.058160 CAAAGTGGAGGCCAGCGG 61.058 66.667 5.01 0.00 32.34 5.52
464 473 3.570212 AAAGTGGAGGCCAGCGGT 61.570 61.111 5.01 0.00 32.34 5.68
465 474 3.133365 AAAGTGGAGGCCAGCGGTT 62.133 57.895 5.01 0.00 32.34 4.44
466 475 1.774894 AAAGTGGAGGCCAGCGGTTA 61.775 55.000 5.01 0.00 32.34 2.85
467 476 2.125106 GTGGAGGCCAGCGGTTAG 60.125 66.667 5.01 0.00 32.34 2.34
468 477 2.284331 TGGAGGCCAGCGGTTAGA 60.284 61.111 5.01 0.00 0.00 2.10
469 478 1.689233 TGGAGGCCAGCGGTTAGAT 60.689 57.895 5.01 0.00 0.00 1.98
470 479 1.069935 GGAGGCCAGCGGTTAGATC 59.930 63.158 5.01 0.00 0.00 2.75
471 480 1.686325 GGAGGCCAGCGGTTAGATCA 61.686 60.000 5.01 0.00 0.00 2.92
472 481 0.530870 GAGGCCAGCGGTTAGATCAC 60.531 60.000 5.01 0.00 0.00 3.06
473 482 1.883084 GGCCAGCGGTTAGATCACG 60.883 63.158 0.00 0.00 0.00 4.35
479 488 3.251817 CGGTTAGATCACGCATCGT 57.748 52.632 0.00 0.00 42.36 3.73
480 489 1.121240 CGGTTAGATCACGCATCGTC 58.879 55.000 0.00 0.00 38.32 4.20
481 490 1.488527 GGTTAGATCACGCATCGTCC 58.511 55.000 0.00 0.00 38.32 4.79
482 491 1.202371 GGTTAGATCACGCATCGTCCA 60.202 52.381 0.00 0.00 38.32 4.02
483 492 2.536365 GTTAGATCACGCATCGTCCAA 58.464 47.619 0.00 0.00 38.32 3.53
484 493 2.203800 TAGATCACGCATCGTCCAAC 57.796 50.000 0.00 0.00 38.32 3.77
485 494 0.802222 AGATCACGCATCGTCCAACG 60.802 55.000 0.00 0.00 44.19 4.10
486 495 1.076533 GATCACGCATCGTCCAACGT 61.077 55.000 0.00 0.00 43.14 3.99
487 496 0.669318 ATCACGCATCGTCCAACGTT 60.669 50.000 0.00 0.00 43.14 3.99
488 497 1.129809 CACGCATCGTCCAACGTTC 59.870 57.895 0.00 0.00 43.14 3.95
489 498 2.369629 ACGCATCGTCCAACGTTCG 61.370 57.895 0.00 0.00 43.14 3.95
490 499 2.776072 GCATCGTCCAACGTTCGG 59.224 61.111 0.00 3.99 43.14 4.30
491 500 2.776072 CATCGTCCAACGTTCGGC 59.224 61.111 0.00 0.00 43.14 5.54
492 501 1.736645 CATCGTCCAACGTTCGGCT 60.737 57.895 0.00 0.00 43.14 5.52
493 502 1.736645 ATCGTCCAACGTTCGGCTG 60.737 57.895 0.00 0.37 43.14 4.85
494 503 4.072088 CGTCCAACGTTCGGCTGC 62.072 66.667 0.00 0.00 36.74 5.25
495 504 2.665185 GTCCAACGTTCGGCTGCT 60.665 61.111 0.00 0.00 0.00 4.24
496 505 1.373748 GTCCAACGTTCGGCTGCTA 60.374 57.895 0.00 0.00 0.00 3.49
497 506 0.739813 GTCCAACGTTCGGCTGCTAT 60.740 55.000 0.00 0.00 0.00 2.97
498 507 0.739462 TCCAACGTTCGGCTGCTATG 60.739 55.000 0.00 0.00 0.00 2.23
499 508 1.019278 CCAACGTTCGGCTGCTATGT 61.019 55.000 0.00 0.00 0.00 2.29
500 509 1.635844 CAACGTTCGGCTGCTATGTA 58.364 50.000 0.00 0.00 0.00 2.29
501 510 2.201732 CAACGTTCGGCTGCTATGTAT 58.798 47.619 0.00 0.00 0.00 2.29
502 511 2.135664 ACGTTCGGCTGCTATGTATC 57.864 50.000 0.00 0.00 0.00 2.24
503 512 1.053048 CGTTCGGCTGCTATGTATCG 58.947 55.000 0.00 0.00 0.00 2.92
504 513 1.419374 GTTCGGCTGCTATGTATCGG 58.581 55.000 0.00 0.00 0.00 4.18
505 514 0.319555 TTCGGCTGCTATGTATCGGC 60.320 55.000 0.00 0.00 0.00 5.54
506 515 1.179174 TCGGCTGCTATGTATCGGCT 61.179 55.000 0.00 0.00 35.08 5.52
507 516 1.010935 CGGCTGCTATGTATCGGCTG 61.011 60.000 0.00 0.00 35.08 4.85
508 517 1.294659 GGCTGCTATGTATCGGCTGC 61.295 60.000 0.00 0.00 45.53 5.25
509 518 0.601046 GCTGCTATGTATCGGCTGCA 60.601 55.000 0.50 0.00 45.56 4.41
510 519 1.943046 GCTGCTATGTATCGGCTGCAT 60.943 52.381 0.50 0.89 45.56 3.96
511 520 2.675032 GCTGCTATGTATCGGCTGCATA 60.675 50.000 0.50 1.88 45.56 3.14
513 522 2.562738 TGCTATGTATCGGCTGCATAGT 59.437 45.455 15.19 0.00 46.51 2.12
514 523 3.761752 TGCTATGTATCGGCTGCATAGTA 59.238 43.478 15.19 10.05 46.51 1.82
515 524 4.142381 TGCTATGTATCGGCTGCATAGTAG 60.142 45.833 15.19 5.55 46.51 2.57
516 525 4.142359 GCTATGTATCGGCTGCATAGTAGT 60.142 45.833 15.19 0.00 46.51 2.73
517 526 4.873746 ATGTATCGGCTGCATAGTAGTT 57.126 40.909 0.50 0.00 0.00 2.24
518 527 4.665833 TGTATCGGCTGCATAGTAGTTT 57.334 40.909 0.50 0.00 0.00 2.66
519 528 4.617959 TGTATCGGCTGCATAGTAGTTTC 58.382 43.478 0.50 0.00 0.00 2.78
579 614 3.895041 TCCTGACAGGAATTCAAAAACCC 59.105 43.478 22.30 0.00 42.51 4.11
598 633 4.723309 ACCCATCCAGATTCTAATTCTGC 58.277 43.478 0.00 0.00 0.00 4.26
637 672 0.736053 GCCTCACCGTTTTTGTGTGA 59.264 50.000 0.00 0.00 37.45 3.58
639 674 2.105323 CTCACCGTTTTTGTGTGAGC 57.895 50.000 6.01 0.00 46.50 4.26
680 736 2.202851 ATCGAGCAAGCGAGGCAG 60.203 61.111 0.00 0.00 44.26 4.85
681 737 3.729965 ATCGAGCAAGCGAGGCAGG 62.730 63.158 0.00 0.00 44.26 4.85
694 755 2.629656 GGCAGGCGCACACATTTCT 61.630 57.895 10.83 0.00 41.24 2.52
695 756 1.286880 GCAGGCGCACACATTTCTT 59.713 52.632 10.83 0.00 38.36 2.52
697 758 0.109597 CAGGCGCACACATTTCTTCC 60.110 55.000 10.83 0.00 0.00 3.46
699 760 1.212751 GCGCACACATTTCTTCCCC 59.787 57.895 0.30 0.00 0.00 4.81
700 761 1.244019 GCGCACACATTTCTTCCCCT 61.244 55.000 0.30 0.00 0.00 4.79
701 762 0.804989 CGCACACATTTCTTCCCCTC 59.195 55.000 0.00 0.00 0.00 4.30
702 763 1.611673 CGCACACATTTCTTCCCCTCT 60.612 52.381 0.00 0.00 0.00 3.69
703 764 2.087646 GCACACATTTCTTCCCCTCTC 58.912 52.381 0.00 0.00 0.00 3.20
704 765 2.290577 GCACACATTTCTTCCCCTCTCT 60.291 50.000 0.00 0.00 0.00 3.10
705 766 3.604582 CACACATTTCTTCCCCTCTCTC 58.395 50.000 0.00 0.00 0.00 3.20
706 767 3.262915 CACACATTTCTTCCCCTCTCTCT 59.737 47.826 0.00 0.00 0.00 3.10
707 768 3.517500 ACACATTTCTTCCCCTCTCTCTC 59.482 47.826 0.00 0.00 0.00 3.20
708 769 3.774216 CACATTTCTTCCCCTCTCTCTCT 59.226 47.826 0.00 0.00 0.00 3.10
709 770 4.030216 ACATTTCTTCCCCTCTCTCTCTC 58.970 47.826 0.00 0.00 0.00 3.20
710 771 2.838637 TTCTTCCCCTCTCTCTCTCC 57.161 55.000 0.00 0.00 0.00 3.71
715 776 1.150536 CCCTCTCTCTCTCCCTCCG 59.849 68.421 0.00 0.00 0.00 4.63
820 882 1.905637 TCTTTTCCTCTTTTCCGCCC 58.094 50.000 0.00 0.00 0.00 6.13
884 956 1.424493 GCTCGCCTCACATCTTTCCG 61.424 60.000 0.00 0.00 0.00 4.30
886 958 2.464459 CGCCTCACATCTTTCCGCC 61.464 63.158 0.00 0.00 0.00 6.13
887 959 1.377202 GCCTCACATCTTTCCGCCA 60.377 57.895 0.00 0.00 0.00 5.69
888 960 1.648467 GCCTCACATCTTTCCGCCAC 61.648 60.000 0.00 0.00 0.00 5.01
889 961 0.036010 CCTCACATCTTTCCGCCACT 60.036 55.000 0.00 0.00 0.00 4.00
890 962 1.363744 CTCACATCTTTCCGCCACTC 58.636 55.000 0.00 0.00 0.00 3.51
891 963 0.036388 TCACATCTTTCCGCCACTCC 60.036 55.000 0.00 0.00 0.00 3.85
892 964 1.026718 CACATCTTTCCGCCACTCCC 61.027 60.000 0.00 0.00 0.00 4.30
917 989 0.827368 CCTTCTACTCCACTCCTGGC 59.173 60.000 0.00 0.00 37.49 4.85
956 1028 2.281484 TCCCCGTGAAGCAAGCAC 60.281 61.111 0.00 0.00 0.00 4.40
972 1045 1.452108 CACATCCTTTCGCCTCCCC 60.452 63.158 0.00 0.00 0.00 4.81
980 1053 2.037381 CCTTTCGCCTCCCCTATTAGAC 59.963 54.545 0.00 0.00 0.00 2.59
982 1055 0.178941 TCGCCTCCCCTATTAGACCC 60.179 60.000 0.00 0.00 0.00 4.46
984 1057 0.841158 GCCTCCCCTATTAGACCCCC 60.841 65.000 0.00 0.00 0.00 5.40
986 1059 2.087573 CCTCCCCTATTAGACCCCCTA 58.912 57.143 0.00 0.00 0.00 3.53
987 1060 2.044630 CCTCCCCTATTAGACCCCCTAG 59.955 59.091 0.00 0.00 0.00 3.02
988 1061 1.435959 TCCCCTATTAGACCCCCTAGC 59.564 57.143 0.00 0.00 0.00 3.42
989 1062 1.437547 CCCCTATTAGACCCCCTAGCT 59.562 57.143 0.00 0.00 0.00 3.32
991 1064 2.111972 CCCTATTAGACCCCCTAGCTCA 59.888 54.545 0.00 0.00 0.00 4.26
992 1065 3.436243 CCTATTAGACCCCCTAGCTCAG 58.564 54.545 0.00 0.00 0.00 3.35
994 1067 2.942604 TTAGACCCCCTAGCTCAGTT 57.057 50.000 0.00 0.00 0.00 3.16
995 1068 2.456073 TAGACCCCCTAGCTCAGTTC 57.544 55.000 0.00 0.00 0.00 3.01
996 1069 0.325765 AGACCCCCTAGCTCAGTTCC 60.326 60.000 0.00 0.00 0.00 3.62
1188 1261 1.449246 GGAGCAGCAGCAGTACCTG 60.449 63.158 3.17 0.00 45.49 4.00
1371 1459 4.457496 CGCACTCCGTCCATGGCT 62.457 66.667 6.96 0.00 0.00 4.75
1554 1883 5.294306 TCCACATCTTATGTTGATTCGCTTC 59.706 40.000 0.00 0.00 42.70 3.86
1555 1884 5.504665 CCACATCTTATGTTGATTCGCTTCC 60.505 44.000 0.00 0.00 42.70 3.46
1556 1885 5.065090 CACATCTTATGTTGATTCGCTTCCA 59.935 40.000 0.00 0.00 42.70 3.53
1557 1886 5.647658 ACATCTTATGTTGATTCGCTTCCAA 59.352 36.000 0.00 0.00 41.63 3.53
1558 1887 6.319658 ACATCTTATGTTGATTCGCTTCCAAT 59.680 34.615 0.00 0.00 41.63 3.16
1601 1930 2.263077 GTGCATCTGGTACTCACTTCG 58.737 52.381 0.00 0.00 0.00 3.79
1619 1948 1.294659 CGCTTGACTGCTCTGGGAAC 61.295 60.000 0.00 0.00 0.00 3.62
1859 2257 2.817834 CCCGGCATGTGGTACGTG 60.818 66.667 0.00 0.00 38.13 4.49
2005 2403 1.002624 TCCCGACATTGCCACCTTC 60.003 57.895 0.00 0.00 0.00 3.46
2007 2405 0.680921 CCCGACATTGCCACCTTCAT 60.681 55.000 0.00 0.00 0.00 2.57
2028 2426 3.714144 TCTTCTTCTCCCCTCGATTCTT 58.286 45.455 0.00 0.00 0.00 2.52
2029 2427 3.702045 TCTTCTTCTCCCCTCGATTCTTC 59.298 47.826 0.00 0.00 0.00 2.87
2030 2428 2.025155 TCTTCTCCCCTCGATTCTTCG 58.975 52.381 0.00 0.00 46.87 3.79
2041 2462 1.424493 GATTCTTCGCCACCTCGCAG 61.424 60.000 0.00 0.00 0.00 5.18
2054 2475 2.832129 ACCTCGCAGATCTTCTTACCAA 59.168 45.455 0.00 0.00 33.89 3.67
2056 2477 3.118956 CCTCGCAGATCTTCTTACCAAGT 60.119 47.826 0.00 0.00 33.89 3.16
2065 2493 4.969484 TCTTCTTACCAAGTTCCCAACTC 58.031 43.478 0.00 0.00 41.91 3.01
2365 2826 3.073735 AGCTCGTGCCTGGAGGAG 61.074 66.667 5.73 4.81 40.80 3.69
2722 3195 2.219325 GAGTGGAGGTGTGAGGAGCG 62.219 65.000 0.00 0.00 0.00 5.03
2730 3203 1.074951 TGTGAGGAGCGGACTCAGA 59.925 57.895 8.04 4.99 44.90 3.27
2745 3218 4.082787 GGACTCAGACTCAGAGTGAAGAAG 60.083 50.000 8.15 1.00 45.79 2.85
2746 3219 4.724399 ACTCAGACTCAGAGTGAAGAAGA 58.276 43.478 8.15 0.00 44.23 2.87
2747 3220 5.136828 ACTCAGACTCAGAGTGAAGAAGAA 58.863 41.667 8.15 0.00 44.23 2.52
2765 3238 2.093447 AGAATTAGCCGCAGTTGCTAGT 60.093 45.455 2.29 0.00 41.94 2.57
2775 3248 2.917971 GCAGTTGCTAGTTAGTCAGTCG 59.082 50.000 0.00 0.00 38.21 4.18
2779 3252 2.786777 TGCTAGTTAGTCAGTCGGTCA 58.213 47.619 0.00 0.00 0.00 4.02
2832 3305 4.776795 AACCCGTCCAATTTGTTCATAC 57.223 40.909 0.00 0.00 0.00 2.39
2833 3306 4.028993 ACCCGTCCAATTTGTTCATACT 57.971 40.909 0.00 0.00 0.00 2.12
2834 3307 4.007659 ACCCGTCCAATTTGTTCATACTC 58.992 43.478 0.00 0.00 0.00 2.59
2851 3324 6.693466 TCATACTCCTACTAGAGATCGAGTG 58.307 44.000 0.00 0.00 37.33 3.51
2870 3343 1.555075 TGCGATTTTCCTCTGCCTAGT 59.445 47.619 0.00 0.00 0.00 2.57
2875 3348 4.442052 CGATTTTCCTCTGCCTAGTGATCA 60.442 45.833 0.00 0.00 0.00 2.92
2876 3349 5.619220 GATTTTCCTCTGCCTAGTGATCAT 58.381 41.667 0.00 0.00 0.00 2.45
2877 3350 4.679373 TTTCCTCTGCCTAGTGATCATC 57.321 45.455 0.00 0.00 0.00 2.92
2886 3371 4.142071 TGCCTAGTGATCATCAGACACTTC 60.142 45.833 0.00 0.00 43.27 3.01
2900 3385 4.681942 CAGACACTTCTTCTAACTCGTTGG 59.318 45.833 0.00 0.00 0.00 3.77
2916 3401 2.090658 CGTTGGTTCGAGTTCTTCATCG 59.909 50.000 0.00 0.00 40.26 3.84
2946 3435 8.437360 TGTCTGTAAATAGGAGCATAAATGTG 57.563 34.615 0.00 0.00 0.00 3.21
2987 3480 4.113815 CTGGCCGCCCTGGATGAA 62.114 66.667 7.03 0.00 42.00 2.57
2988 3481 3.419580 TGGCCGCCCTGGATGAAT 61.420 61.111 7.03 0.00 42.00 2.57
2989 3482 2.595754 GGCCGCCCTGGATGAATC 60.596 66.667 0.00 0.00 42.00 2.52
3005 3498 7.157347 TGGATGAATCTGAATCTTTATCCTCG 58.843 38.462 11.99 0.00 38.01 4.63
3043 3536 1.135333 TGCAACCAAACCGACCTTTTC 59.865 47.619 0.00 0.00 0.00 2.29
3057 3550 3.452627 GACCTTTTCTCTCTGCATCCCTA 59.547 47.826 0.00 0.00 0.00 3.53
3058 3551 3.198853 ACCTTTTCTCTCTGCATCCCTAC 59.801 47.826 0.00 0.00 0.00 3.18
3059 3552 3.454082 CCTTTTCTCTCTGCATCCCTACT 59.546 47.826 0.00 0.00 0.00 2.57
3079 3572 1.618837 TGACTGACTCTTGTAGGCCAC 59.381 52.381 5.01 1.31 28.59 5.01
3093 3586 2.124983 CCACCCGGAGCTGTGATG 60.125 66.667 0.73 0.00 34.37 3.07
3094 3587 2.124983 CACCCGGAGCTGTGATGG 60.125 66.667 0.73 0.00 34.37 3.51
3124 3639 2.030958 GGGTTCGTGTTACCGCTGG 61.031 63.158 0.00 0.00 36.49 4.85
3126 3641 2.357760 TTCGTGTTACCGCTGGCC 60.358 61.111 0.00 0.00 0.00 5.36
3127 3642 4.728102 TCGTGTTACCGCTGGCCG 62.728 66.667 0.00 0.00 0.00 6.13
3156 3674 3.868077 GTGCCACTTGACAGATGATACTC 59.132 47.826 0.00 0.00 0.00 2.59
3258 3871 3.243636 GGACATGTATGTACGTACCCAGG 60.244 52.174 22.43 18.41 41.95 4.45
3269 3882 1.067212 CGTACCCAGGTAGATCAGTGC 59.933 57.143 0.00 0.00 0.00 4.40
3297 3910 2.265683 CACATGAGACATGACACTCCG 58.734 52.381 16.86 2.69 32.84 4.63
3303 3916 1.815613 AGACATGACACTCCGTCTGAG 59.184 52.381 0.00 0.00 45.60 3.35
3307 3920 1.524848 TGACACTCCGTCTGAGAGAC 58.475 55.000 0.00 0.00 45.60 3.36
3331 3944 5.738225 CGCAACTTGCTACTAACTACTACTC 59.262 44.000 11.93 0.00 42.25 2.59
3332 3945 5.738225 GCAACTTGCTACTAACTACTACTCG 59.262 44.000 6.50 0.00 40.96 4.18
3333 3946 6.402983 GCAACTTGCTACTAACTACTACTCGA 60.403 42.308 6.50 0.00 40.96 4.04
3334 3947 7.524912 CAACTTGCTACTAACTACTACTCGAA 58.475 38.462 0.00 0.00 0.00 3.71
3394 4007 1.464608 CCAAATCGTGGTGTACTGCTG 59.535 52.381 0.00 0.00 43.20 4.41
3395 4008 1.135972 CAAATCGTGGTGTACTGCTGC 60.136 52.381 0.00 0.00 0.00 5.25
3396 4009 0.321671 AATCGTGGTGTACTGCTGCT 59.678 50.000 0.00 0.00 0.00 4.24
3403 4016 2.492088 TGGTGTACTGCTGCTGTAGTAG 59.508 50.000 19.21 9.13 40.95 2.57
3425 4038 1.885049 TAAGCTTCCTGGGCATCTCT 58.115 50.000 0.00 0.00 0.00 3.10
3426 4039 1.885049 AAGCTTCCTGGGCATCTCTA 58.115 50.000 0.00 0.00 0.00 2.43
3427 4040 1.422531 AGCTTCCTGGGCATCTCTAG 58.577 55.000 0.00 0.00 0.00 2.43
3428 4041 1.062581 AGCTTCCTGGGCATCTCTAGA 60.063 52.381 0.00 0.00 0.00 2.43
3445 4058 0.755327 AGAGGGTGTGTTTGGTTGGC 60.755 55.000 0.00 0.00 0.00 4.52
3458 4071 2.285668 TTGGCCCAGGAGAGGAGG 60.286 66.667 0.00 0.00 0.00 4.30
3463 4076 2.641746 CCCAGGAGAGGAGGGGAGT 61.642 68.421 0.00 0.00 43.57 3.85
3466 4079 2.041405 GGAGAGGAGGGGAGTGGG 60.041 72.222 0.00 0.00 0.00 4.61
3471 4084 3.075641 GGAGGGGAGTGGGACGAC 61.076 72.222 0.00 0.00 0.00 4.34
3474 4087 2.920912 GGGGAGTGGGACGACACA 60.921 66.667 11.01 0.00 43.72 3.72
3571 4193 2.674462 GCCTCCTACTCCGTTTCTGTTC 60.674 54.545 0.00 0.00 0.00 3.18
3572 4194 2.826725 CCTCCTACTCCGTTTCTGTTCT 59.173 50.000 0.00 0.00 0.00 3.01
3573 4195 3.367498 CCTCCTACTCCGTTTCTGTTCTG 60.367 52.174 0.00 0.00 0.00 3.02
3574 4196 3.228453 TCCTACTCCGTTTCTGTTCTGT 58.772 45.455 0.00 0.00 0.00 3.41
3575 4197 3.640029 TCCTACTCCGTTTCTGTTCTGTT 59.360 43.478 0.00 0.00 0.00 3.16
3576 4198 3.988517 CCTACTCCGTTTCTGTTCTGTTC 59.011 47.826 0.00 0.00 0.00 3.18
3577 4199 3.821421 ACTCCGTTTCTGTTCTGTTCT 57.179 42.857 0.00 0.00 0.00 3.01
3578 4200 3.458189 ACTCCGTTTCTGTTCTGTTCTG 58.542 45.455 0.00 0.00 0.00 3.02
3579 4201 3.118738 ACTCCGTTTCTGTTCTGTTCTGT 60.119 43.478 0.00 0.00 0.00 3.41
3580 4202 3.869065 TCCGTTTCTGTTCTGTTCTGTT 58.131 40.909 0.00 0.00 0.00 3.16
3591 4213 0.948623 TGTTCTGTTGGACCATCGCG 60.949 55.000 0.00 0.00 0.00 5.87
3592 4214 2.032634 TTCTGTTGGACCATCGCGC 61.033 57.895 0.00 0.00 0.00 6.86
3593 4215 3.853330 CTGTTGGACCATCGCGCG 61.853 66.667 26.76 26.76 0.00 6.86
3695 4330 1.893808 CGGTGGCATGGCATCTACC 60.894 63.158 27.75 20.92 0.00 3.18
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
3 4 1.213094 GACGAATGGTACCGATGCCG 61.213 60.000 7.57 8.71 32.02 5.69
33 34 4.131596 TGCTAAACGCTAATACCATTCCC 58.868 43.478 0.00 0.00 40.11 3.97
36 37 5.031066 TCCTGCTAAACGCTAATACCATT 57.969 39.130 0.00 0.00 40.11 3.16
38 39 3.449737 ACTCCTGCTAAACGCTAATACCA 59.550 43.478 0.00 0.00 40.11 3.25
39 40 4.056092 ACTCCTGCTAAACGCTAATACC 57.944 45.455 0.00 0.00 40.11 2.73
41 42 6.270815 CAAGTACTCCTGCTAAACGCTAATA 58.729 40.000 0.00 0.00 40.11 0.98
42 43 5.109903 CAAGTACTCCTGCTAAACGCTAAT 58.890 41.667 0.00 0.00 40.11 1.73
43 44 4.491676 CAAGTACTCCTGCTAAACGCTAA 58.508 43.478 0.00 0.00 40.11 3.09
45 46 2.931320 GCAAGTACTCCTGCTAAACGCT 60.931 50.000 11.53 0.00 40.11 5.07
46 47 1.393883 GCAAGTACTCCTGCTAAACGC 59.606 52.381 11.53 0.00 39.77 4.84
47 48 2.668457 CTGCAAGTACTCCTGCTAAACG 59.332 50.000 18.00 1.72 0.00 3.60
49 50 4.507710 CATCTGCAAGTACTCCTGCTAAA 58.492 43.478 18.00 6.39 33.76 1.85
50 51 3.679917 GCATCTGCAAGTACTCCTGCTAA 60.680 47.826 18.00 8.44 41.59 3.09
51 52 2.159043 GCATCTGCAAGTACTCCTGCTA 60.159 50.000 18.00 8.73 41.59 3.49
52 53 1.406614 GCATCTGCAAGTACTCCTGCT 60.407 52.381 18.00 0.00 41.59 4.24
53 54 1.012841 GCATCTGCAAGTACTCCTGC 58.987 55.000 11.84 11.84 41.59 4.85
54 55 1.065926 TGGCATCTGCAAGTACTCCTG 60.066 52.381 4.33 0.00 44.36 3.86
55 56 1.279496 TGGCATCTGCAAGTACTCCT 58.721 50.000 4.33 0.00 44.36 3.69
56 57 2.338577 ATGGCATCTGCAAGTACTCC 57.661 50.000 4.33 0.00 44.36 3.85
57 58 3.944015 AGAAATGGCATCTGCAAGTACTC 59.056 43.478 0.00 0.00 44.36 2.59
58 59 3.960571 AGAAATGGCATCTGCAAGTACT 58.039 40.909 0.00 0.00 44.36 2.73
95 96 4.092091 CACAAGGATGTCTTCTAAGCGTTC 59.908 45.833 0.00 0.00 37.82 3.95
96 97 3.997021 CACAAGGATGTCTTCTAAGCGTT 59.003 43.478 0.00 0.00 37.82 4.84
98 99 3.589988 ACACAAGGATGTCTTCTAAGCG 58.410 45.455 0.00 0.00 37.82 4.68
139 140 3.443681 TGCCTTCCCTTTCGAAATCAATC 59.556 43.478 11.70 0.00 0.00 2.67
140 141 3.430453 TGCCTTCCCTTTCGAAATCAAT 58.570 40.909 11.70 0.00 0.00 2.57
141 142 2.870175 TGCCTTCCCTTTCGAAATCAA 58.130 42.857 11.70 3.84 0.00 2.57
142 143 2.556622 GTTGCCTTCCCTTTCGAAATCA 59.443 45.455 11.70 0.00 0.00 2.57
177 178 1.699656 CGCACGCTCCTTGATTCAGG 61.700 60.000 0.00 0.00 34.86 3.86
178 179 1.699656 CCGCACGCTCCTTGATTCAG 61.700 60.000 0.00 0.00 0.00 3.02
196 202 0.529773 TCGATGTTAGTCGGCATGCC 60.530 55.000 27.67 27.67 41.74 4.40
210 219 1.200252 CAGGGTCCGTAGCTATCGATG 59.800 57.143 8.54 0.00 0.00 3.84
216 225 2.226962 AACTTCAGGGTCCGTAGCTA 57.773 50.000 0.00 0.00 0.00 3.32
296 305 3.728373 GGGGGCAGTGGGTAGGTG 61.728 72.222 0.00 0.00 0.00 4.00
317 326 3.269578 CATGTGGTGCCAAGATGGA 57.730 52.632 0.00 0.00 40.96 3.41
342 351 5.880332 TCTTTTCATGTAGGAGTGGTATTGC 59.120 40.000 0.00 0.00 0.00 3.56
344 353 7.942341 TGTTTCTTTTCATGTAGGAGTGGTATT 59.058 33.333 0.00 0.00 0.00 1.89
352 361 6.119536 ACACTGTGTTTCTTTTCATGTAGGA 58.880 36.000 7.80 0.00 0.00 2.94
353 362 6.377327 ACACTGTGTTTCTTTTCATGTAGG 57.623 37.500 7.80 0.00 0.00 3.18
354 363 6.197096 GCAACACTGTGTTTCTTTTCATGTAG 59.803 38.462 22.66 8.60 38.77 2.74
355 364 6.033341 GCAACACTGTGTTTCTTTTCATGTA 58.967 36.000 22.66 0.00 38.77 2.29
357 366 5.104374 AGCAACACTGTGTTTCTTTTCATG 58.896 37.500 22.66 10.72 38.77 3.07
359 368 4.782019 AGCAACACTGTGTTTCTTTTCA 57.218 36.364 22.66 0.00 38.77 2.69
360 369 7.376072 GTGTATAGCAACACTGTGTTTCTTTTC 59.624 37.037 26.13 17.78 45.12 2.29
361 370 7.193595 GTGTATAGCAACACTGTGTTTCTTTT 58.806 34.615 26.13 17.77 45.12 2.27
362 371 6.725246 GTGTATAGCAACACTGTGTTTCTTT 58.275 36.000 26.13 21.15 45.12 2.52
363 372 6.300354 GTGTATAGCAACACTGTGTTTCTT 57.700 37.500 26.13 17.34 45.12 2.52
364 373 5.924475 GTGTATAGCAACACTGTGTTTCT 57.076 39.130 24.79 24.79 45.12 2.52
374 383 3.313690 CAGTGTCGTGTGTATAGCAACA 58.686 45.455 0.00 0.00 0.00 3.33
375 384 2.666508 CCAGTGTCGTGTGTATAGCAAC 59.333 50.000 0.00 0.00 0.00 4.17
376 385 2.353307 CCCAGTGTCGTGTGTATAGCAA 60.353 50.000 0.00 0.00 0.00 3.91
377 386 1.203758 CCCAGTGTCGTGTGTATAGCA 59.796 52.381 0.00 0.00 0.00 3.49
378 387 1.203994 ACCCAGTGTCGTGTGTATAGC 59.796 52.381 0.00 0.00 0.00 2.97
379 388 3.488721 GCTACCCAGTGTCGTGTGTATAG 60.489 52.174 0.00 0.00 0.00 1.31
380 389 2.424601 GCTACCCAGTGTCGTGTGTATA 59.575 50.000 0.00 0.00 0.00 1.47
381 390 1.203994 GCTACCCAGTGTCGTGTGTAT 59.796 52.381 0.00 0.00 0.00 2.29
382 391 0.599558 GCTACCCAGTGTCGTGTGTA 59.400 55.000 0.00 0.00 0.00 2.90
383 392 1.366366 GCTACCCAGTGTCGTGTGT 59.634 57.895 0.00 0.00 0.00 3.72
384 393 1.374252 GGCTACCCAGTGTCGTGTG 60.374 63.158 0.00 0.00 0.00 3.82
385 394 2.927580 CGGCTACCCAGTGTCGTGT 61.928 63.158 0.00 0.00 0.00 4.49
386 395 1.945354 ATCGGCTACCCAGTGTCGTG 61.945 60.000 0.00 0.00 0.00 4.35
387 396 1.255667 AATCGGCTACCCAGTGTCGT 61.256 55.000 0.00 0.00 0.00 4.34
388 397 0.108329 AAATCGGCTACCCAGTGTCG 60.108 55.000 0.00 0.00 0.00 4.35
389 398 1.369625 CAAATCGGCTACCCAGTGTC 58.630 55.000 0.00 0.00 0.00 3.67
390 399 0.676782 GCAAATCGGCTACCCAGTGT 60.677 55.000 0.00 0.00 0.00 3.55
391 400 1.705337 CGCAAATCGGCTACCCAGTG 61.705 60.000 0.00 0.00 33.78 3.66
392 401 1.449601 CGCAAATCGGCTACCCAGT 60.450 57.895 0.00 0.00 33.78 4.00
393 402 2.823829 GCGCAAATCGGCTACCCAG 61.824 63.158 0.30 0.00 38.94 4.45
394 403 2.822255 GCGCAAATCGGCTACCCA 60.822 61.111 0.30 0.00 38.94 4.51
395 404 2.822255 TGCGCAAATCGGCTACCC 60.822 61.111 8.16 0.00 38.94 3.69
396 405 2.403586 GTGCGCAAATCGGCTACC 59.596 61.111 14.00 0.00 38.94 3.18
397 406 1.762222 ATCGTGCGCAAATCGGCTAC 61.762 55.000 14.00 0.00 38.94 3.58
398 407 1.487452 GATCGTGCGCAAATCGGCTA 61.487 55.000 14.00 0.00 38.94 3.93
399 408 2.813179 GATCGTGCGCAAATCGGCT 61.813 57.895 14.00 2.95 38.94 5.52
400 409 2.351210 GATCGTGCGCAAATCGGC 60.351 61.111 14.00 4.28 38.94 5.54
401 410 2.053984 CGATCGTGCGCAAATCGG 60.054 61.111 32.70 21.11 38.82 4.18
409 418 2.916423 GATCAGTGCGATCGTGCG 59.084 61.111 17.81 3.37 41.24 5.34
415 424 4.592192 CGGCCGGATCAGTGCGAT 62.592 66.667 20.10 0.00 42.26 4.58
419 428 4.758251 TGCACGGCCGGATCAGTG 62.758 66.667 31.76 18.53 37.63 3.66
420 429 3.785859 ATGCACGGCCGGATCAGT 61.786 61.111 31.76 3.35 0.00 3.41
421 430 3.274586 CATGCACGGCCGGATCAG 61.275 66.667 31.76 14.41 0.00 2.90
429 438 4.759096 GTCCAACGCATGCACGGC 62.759 66.667 19.57 7.03 37.37 5.68
430 439 2.399511 TTTGTCCAACGCATGCACGG 62.400 55.000 19.57 14.27 37.37 4.94
431 440 0.998226 CTTTGTCCAACGCATGCACG 60.998 55.000 19.57 4.59 39.50 5.34
432 441 0.030638 ACTTTGTCCAACGCATGCAC 59.969 50.000 19.57 8.38 0.00 4.57
433 442 0.030504 CACTTTGTCCAACGCATGCA 59.969 50.000 19.57 0.00 0.00 3.96
434 443 0.664166 CCACTTTGTCCAACGCATGC 60.664 55.000 7.91 7.91 0.00 4.06
435 444 0.950836 TCCACTTTGTCCAACGCATG 59.049 50.000 0.00 0.00 0.00 4.06
436 445 1.238439 CTCCACTTTGTCCAACGCAT 58.762 50.000 0.00 0.00 0.00 4.73
437 446 0.817634 CCTCCACTTTGTCCAACGCA 60.818 55.000 0.00 0.00 0.00 5.24
438 447 1.949257 CCTCCACTTTGTCCAACGC 59.051 57.895 0.00 0.00 0.00 4.84
439 448 1.515521 GGCCTCCACTTTGTCCAACG 61.516 60.000 0.00 0.00 0.00 4.10
440 449 0.467290 TGGCCTCCACTTTGTCCAAC 60.467 55.000 3.32 0.00 0.00 3.77
441 450 0.178992 CTGGCCTCCACTTTGTCCAA 60.179 55.000 3.32 0.00 0.00 3.53
442 451 1.455849 CTGGCCTCCACTTTGTCCA 59.544 57.895 3.32 0.00 0.00 4.02
443 452 1.973812 GCTGGCCTCCACTTTGTCC 60.974 63.158 3.32 0.00 0.00 4.02
444 453 2.328099 CGCTGGCCTCCACTTTGTC 61.328 63.158 3.32 0.00 0.00 3.18
445 454 2.281761 CGCTGGCCTCCACTTTGT 60.282 61.111 3.32 0.00 0.00 2.83
446 455 3.058160 CCGCTGGCCTCCACTTTG 61.058 66.667 3.32 0.00 0.00 2.77
447 456 1.774894 TAACCGCTGGCCTCCACTTT 61.775 55.000 3.32 0.00 0.00 2.66
448 457 2.185310 CTAACCGCTGGCCTCCACTT 62.185 60.000 3.32 0.00 0.00 3.16
449 458 2.606519 TAACCGCTGGCCTCCACT 60.607 61.111 3.32 0.00 0.00 4.00
450 459 1.972660 ATCTAACCGCTGGCCTCCAC 61.973 60.000 3.32 0.00 0.00 4.02
451 460 1.686325 GATCTAACCGCTGGCCTCCA 61.686 60.000 3.32 0.00 0.00 3.86
452 461 1.069935 GATCTAACCGCTGGCCTCC 59.930 63.158 3.32 0.00 0.00 4.30
453 462 0.530870 GTGATCTAACCGCTGGCCTC 60.531 60.000 3.32 0.00 0.00 4.70
454 463 1.522569 GTGATCTAACCGCTGGCCT 59.477 57.895 3.32 0.00 0.00 5.19
455 464 1.883084 CGTGATCTAACCGCTGGCC 60.883 63.158 0.00 0.00 0.00 5.36
456 465 2.526120 GCGTGATCTAACCGCTGGC 61.526 63.158 10.78 0.00 43.81 4.85
457 466 3.706140 GCGTGATCTAACCGCTGG 58.294 61.111 10.78 0.00 43.81 4.85
461 470 1.121240 GACGATGCGTGATCTAACCG 58.879 55.000 0.00 0.00 41.37 4.44
462 471 1.202371 TGGACGATGCGTGATCTAACC 60.202 52.381 0.00 0.00 41.37 2.85
463 472 2.203800 TGGACGATGCGTGATCTAAC 57.796 50.000 0.00 0.00 41.37 2.34
464 473 2.536365 GTTGGACGATGCGTGATCTAA 58.464 47.619 0.00 0.00 41.37 2.10
465 474 1.533129 CGTTGGACGATGCGTGATCTA 60.533 52.381 0.00 0.00 46.05 1.98
466 475 0.802222 CGTTGGACGATGCGTGATCT 60.802 55.000 0.00 0.00 46.05 2.75
467 476 1.076533 ACGTTGGACGATGCGTGATC 61.077 55.000 7.54 0.00 46.05 2.92
468 477 0.669318 AACGTTGGACGATGCGTGAT 60.669 50.000 0.00 0.00 46.05 3.06
469 478 1.279527 GAACGTTGGACGATGCGTGA 61.280 55.000 5.00 0.00 46.05 4.35
470 479 1.129809 GAACGTTGGACGATGCGTG 59.870 57.895 5.00 0.00 46.05 5.34
471 480 2.369629 CGAACGTTGGACGATGCGT 61.370 57.895 5.00 0.00 46.05 5.24
472 481 2.390288 CGAACGTTGGACGATGCG 59.610 61.111 5.00 0.00 46.05 4.73
473 482 2.776072 CCGAACGTTGGACGATGC 59.224 61.111 12.28 0.00 46.05 3.91
474 483 1.736645 AGCCGAACGTTGGACGATG 60.737 57.895 12.28 0.00 46.05 3.84
475 484 1.736645 CAGCCGAACGTTGGACGAT 60.737 57.895 12.28 0.00 46.05 3.73
476 485 2.355363 CAGCCGAACGTTGGACGA 60.355 61.111 12.28 0.00 46.05 4.20
478 487 0.739813 ATAGCAGCCGAACGTTGGAC 60.740 55.000 12.28 0.00 0.00 4.02
479 488 0.739462 CATAGCAGCCGAACGTTGGA 60.739 55.000 12.28 0.00 0.00 3.53
480 489 1.019278 ACATAGCAGCCGAACGTTGG 61.019 55.000 5.00 3.82 0.00 3.77
481 490 1.635844 TACATAGCAGCCGAACGTTG 58.364 50.000 5.00 0.00 0.00 4.10
482 491 2.470821 GATACATAGCAGCCGAACGTT 58.529 47.619 0.00 0.00 0.00 3.99
483 492 1.599667 CGATACATAGCAGCCGAACGT 60.600 52.381 0.00 0.00 0.00 3.99
484 493 1.053048 CGATACATAGCAGCCGAACG 58.947 55.000 0.00 0.00 0.00 3.95
485 494 1.419374 CCGATACATAGCAGCCGAAC 58.581 55.000 0.00 0.00 0.00 3.95
486 495 0.319555 GCCGATACATAGCAGCCGAA 60.320 55.000 0.00 0.00 0.00 4.30
487 496 1.179174 AGCCGATACATAGCAGCCGA 61.179 55.000 0.00 0.00 0.00 5.54
488 497 1.010935 CAGCCGATACATAGCAGCCG 61.011 60.000 0.00 0.00 0.00 5.52
489 498 1.294659 GCAGCCGATACATAGCAGCC 61.295 60.000 0.00 0.00 33.40 4.85
490 499 0.601046 TGCAGCCGATACATAGCAGC 60.601 55.000 0.00 0.00 39.24 5.25
491 500 2.090400 ATGCAGCCGATACATAGCAG 57.910 50.000 0.00 0.00 35.26 4.24
492 501 2.562738 ACTATGCAGCCGATACATAGCA 59.437 45.455 4.14 0.00 44.59 3.49
493 502 3.238108 ACTATGCAGCCGATACATAGC 57.762 47.619 4.14 0.00 44.59 2.97
494 503 5.568685 ACTACTATGCAGCCGATACATAG 57.431 43.478 2.85 2.85 45.65 2.23
495 504 5.977489 AACTACTATGCAGCCGATACATA 57.023 39.130 0.00 0.00 0.00 2.29
496 505 4.873746 AACTACTATGCAGCCGATACAT 57.126 40.909 0.00 0.00 0.00 2.29
497 506 4.617959 GAAACTACTATGCAGCCGATACA 58.382 43.478 0.00 0.00 0.00 2.29
498 507 3.669122 CGAAACTACTATGCAGCCGATAC 59.331 47.826 0.00 0.00 0.00 2.24
499 508 3.566742 TCGAAACTACTATGCAGCCGATA 59.433 43.478 0.00 0.00 0.00 2.92
500 509 2.361119 TCGAAACTACTATGCAGCCGAT 59.639 45.455 0.00 0.00 0.00 4.18
501 510 1.746787 TCGAAACTACTATGCAGCCGA 59.253 47.619 0.00 0.00 0.00 5.54
502 511 2.203800 TCGAAACTACTATGCAGCCG 57.796 50.000 0.00 0.00 0.00 5.52
503 512 3.682858 TGTTTCGAAACTACTATGCAGCC 59.317 43.478 33.94 10.27 39.59 4.85
504 513 4.151689 TGTGTTTCGAAACTACTATGCAGC 59.848 41.667 33.94 10.45 39.59 5.25
505 514 5.176774 TGTGTGTTTCGAAACTACTATGCAG 59.823 40.000 33.94 0.00 39.59 4.41
506 515 5.051153 TGTGTGTTTCGAAACTACTATGCA 58.949 37.500 33.94 22.85 39.59 3.96
507 516 5.585500 TGTGTGTTTCGAAACTACTATGC 57.415 39.130 33.94 21.34 39.59 3.14
508 517 7.227461 GTCATGTGTGTTTCGAAACTACTATG 58.773 38.462 33.94 29.48 39.59 2.23
509 518 6.089016 CGTCATGTGTGTTTCGAAACTACTAT 59.911 38.462 33.94 23.80 39.59 2.12
510 519 5.400188 CGTCATGTGTGTTTCGAAACTACTA 59.600 40.000 33.94 23.01 39.59 1.82
511 520 4.208460 CGTCATGTGTGTTTCGAAACTACT 59.792 41.667 33.94 20.73 39.59 2.57
512 521 4.442705 CGTCATGTGTGTTTCGAAACTAC 58.557 43.478 33.94 30.15 39.59 2.73
513 522 3.491639 CCGTCATGTGTGTTTCGAAACTA 59.508 43.478 33.94 23.07 39.59 2.24
514 523 2.286833 CCGTCATGTGTGTTTCGAAACT 59.713 45.455 33.94 16.44 39.59 2.66
515 524 2.635444 CCGTCATGTGTGTTTCGAAAC 58.365 47.619 29.72 29.72 39.33 2.78
516 525 1.003331 GCCGTCATGTGTGTTTCGAAA 60.003 47.619 6.47 6.47 0.00 3.46
517 526 0.584396 GCCGTCATGTGTGTTTCGAA 59.416 50.000 0.00 0.00 0.00 3.71
518 527 1.553195 CGCCGTCATGTGTGTTTCGA 61.553 55.000 0.00 0.00 0.00 3.71
519 528 1.154672 CGCCGTCATGTGTGTTTCG 60.155 57.895 0.00 0.00 0.00 3.46
579 614 5.469421 GTGGAGCAGAATTAGAATCTGGATG 59.531 44.000 5.76 0.00 43.60 3.51
598 633 1.841663 CGGCCGAACAAACTGTGGAG 61.842 60.000 24.07 0.00 0.00 3.86
656 691 0.670706 TCGCTTGCTCGATGCTATCT 59.329 50.000 8.07 0.00 43.37 1.98
677 733 0.730494 GAAGAAATGTGTGCGCCTGC 60.730 55.000 4.18 0.00 43.20 4.85
678 734 0.109597 GGAAGAAATGTGTGCGCCTG 60.110 55.000 4.18 0.00 0.00 4.85
680 736 1.212751 GGGAAGAAATGTGTGCGCC 59.787 57.895 4.18 0.00 0.00 6.53
681 737 1.212751 GGGGAAGAAATGTGTGCGC 59.787 57.895 0.00 0.00 0.00 6.09
682 738 0.804989 GAGGGGAAGAAATGTGTGCG 59.195 55.000 0.00 0.00 0.00 5.34
683 739 2.087646 GAGAGGGGAAGAAATGTGTGC 58.912 52.381 0.00 0.00 0.00 4.57
694 755 0.930726 GAGGGAGAGAGAGAGGGGAA 59.069 60.000 0.00 0.00 0.00 3.97
695 756 0.996762 GGAGGGAGAGAGAGAGGGGA 60.997 65.000 0.00 0.00 0.00 4.81
697 758 1.150536 CGGAGGGAGAGAGAGAGGG 59.849 68.421 0.00 0.00 0.00 4.30
699 760 1.528309 GGCGGAGGGAGAGAGAGAG 60.528 68.421 0.00 0.00 0.00 3.20
700 761 2.598467 GGCGGAGGGAGAGAGAGA 59.402 66.667 0.00 0.00 0.00 3.10
701 762 2.520741 GGGCGGAGGGAGAGAGAG 60.521 72.222 0.00 0.00 0.00 3.20
702 763 4.507916 CGGGCGGAGGGAGAGAGA 62.508 72.222 0.00 0.00 0.00 3.10
703 764 4.507916 TCGGGCGGAGGGAGAGAG 62.508 72.222 0.00 0.00 0.00 3.20
704 765 4.816984 GTCGGGCGGAGGGAGAGA 62.817 72.222 0.00 0.00 0.00 3.10
706 767 4.458829 ATGTCGGGCGGAGGGAGA 62.459 66.667 0.00 0.00 0.00 3.71
707 768 3.917760 GATGTCGGGCGGAGGGAG 61.918 72.222 0.00 0.00 0.00 4.30
762 824 1.282930 GGAAACCGTCTGACGTGAGC 61.283 60.000 26.35 13.87 40.58 4.26
820 882 2.803451 CGAGATGAGACGGGAAAAGAG 58.197 52.381 0.00 0.00 0.00 2.85
865 937 1.424493 CGGAAAGATGTGAGGCGAGC 61.424 60.000 0.00 0.00 0.00 5.03
892 964 0.340208 AGTGGAGTAGAAGGAGGGGG 59.660 60.000 0.00 0.00 0.00 5.40
926 998 3.883549 GGGGAGGGCATGGAGAGC 61.884 72.222 0.00 0.00 0.00 4.09
956 1028 1.059913 ATAGGGGAGGCGAAAGGATG 58.940 55.000 0.00 0.00 0.00 3.51
972 1045 4.120946 ACTGAGCTAGGGGGTCTAATAG 57.879 50.000 0.00 0.00 42.40 1.73
980 1053 3.095347 GCGGAACTGAGCTAGGGGG 62.095 68.421 0.00 0.00 0.00 5.40
982 1055 1.739338 ATCGCGGAACTGAGCTAGGG 61.739 60.000 6.13 0.00 0.00 3.53
984 1057 0.596083 CCATCGCGGAACTGAGCTAG 60.596 60.000 6.13 0.00 36.56 3.42
986 1059 2.185350 CCATCGCGGAACTGAGCT 59.815 61.111 6.13 0.00 36.56 4.09
987 1060 1.880340 CTCCATCGCGGAACTGAGC 60.880 63.158 6.13 0.00 45.75 4.26
988 1061 0.173481 TTCTCCATCGCGGAACTGAG 59.827 55.000 6.13 6.00 45.75 3.35
989 1062 0.173481 CTTCTCCATCGCGGAACTGA 59.827 55.000 6.13 0.00 45.75 3.41
991 1064 0.970937 TCCTTCTCCATCGCGGAACT 60.971 55.000 6.13 0.00 45.75 3.01
992 1065 0.528684 CTCCTTCTCCATCGCGGAAC 60.529 60.000 6.13 0.00 45.75 3.62
994 1067 1.076995 TCTCCTTCTCCATCGCGGA 60.077 57.895 6.13 0.00 43.61 5.54
995 1068 1.361993 CTCTCCTTCTCCATCGCGG 59.638 63.158 6.13 0.00 0.00 6.46
996 1069 1.103987 TCCTCTCCTTCTCCATCGCG 61.104 60.000 0.00 0.00 0.00 5.87
1188 1261 2.024319 CGCTATAAGCTGCTCCGGC 61.024 63.158 1.00 4.79 39.60 6.13
1200 1273 2.336448 CTGCCAGAGCGCGCTATA 59.664 61.111 36.69 15.70 44.31 1.31
1554 1883 1.033746 AGCGGCATCACTTGGATTGG 61.034 55.000 1.45 0.00 32.57 3.16
1555 1884 0.813184 AAGCGGCATCACTTGGATTG 59.187 50.000 1.45 0.00 32.57 2.67
1556 1885 1.549203 AAAGCGGCATCACTTGGATT 58.451 45.000 1.45 0.00 32.57 3.01
1557 1886 1.203052 CAAAAGCGGCATCACTTGGAT 59.797 47.619 1.45 0.00 36.39 3.41
1558 1887 0.597568 CAAAAGCGGCATCACTTGGA 59.402 50.000 1.45 0.00 0.00 3.53
1601 1930 0.036022 AGTTCCCAGAGCAGTCAAGC 59.964 55.000 0.00 0.00 0.00 4.01
1619 1948 2.098680 GACGACGACTCCTGCGAG 59.901 66.667 0.00 0.00 42.32 5.03
1989 2387 0.734889 GATGAAGGTGGCAATGTCGG 59.265 55.000 0.00 0.00 0.00 4.79
2005 2403 3.640967 AGAATCGAGGGGAGAAGAAGATG 59.359 47.826 0.00 0.00 0.00 2.90
2007 2405 3.390175 AGAATCGAGGGGAGAAGAAGA 57.610 47.619 0.00 0.00 0.00 2.87
2028 2426 2.284798 GAAGATCTGCGAGGTGGCGA 62.285 60.000 0.00 0.00 35.06 5.54
2029 2427 1.880340 GAAGATCTGCGAGGTGGCG 60.880 63.158 0.00 0.00 35.06 5.69
2030 2428 0.107945 AAGAAGATCTGCGAGGTGGC 60.108 55.000 0.00 0.00 0.00 5.01
2041 2462 5.561679 AGTTGGGAACTTGGTAAGAAGATC 58.438 41.667 0.00 0.00 39.04 2.75
2054 2475 0.537143 TGCATTGCGAGTTGGGAACT 60.537 50.000 3.84 0.00 46.38 3.01
2056 2477 1.243342 CCTGCATTGCGAGTTGGGAA 61.243 55.000 3.84 0.00 0.00 3.97
2128 2589 0.038159 CGCCGTTCACCTTCTTCTCT 60.038 55.000 0.00 0.00 0.00 3.10
2722 3195 3.417101 TCTTCACTCTGAGTCTGAGTCC 58.583 50.000 25.04 0.00 39.90 3.85
2730 3203 5.623368 CGGCTAATTCTTCTTCACTCTGAGT 60.623 44.000 4.06 4.06 0.00 3.41
2765 3238 1.540267 GCAGACTGACCGACTGACTAA 59.460 52.381 6.65 0.00 37.56 2.24
2779 3252 0.040351 TCTCTACCAGCAGGCAGACT 59.960 55.000 0.00 0.00 39.06 3.24
2815 3288 6.106673 AGTAGGAGTATGAACAAATTGGACG 58.893 40.000 0.00 0.00 0.00 4.79
2832 3305 2.734606 CGCACTCGATCTCTAGTAGGAG 59.265 54.545 0.00 0.00 38.10 3.69
2833 3306 2.364647 TCGCACTCGATCTCTAGTAGGA 59.635 50.000 0.00 0.00 40.21 2.94
2834 3307 2.756829 TCGCACTCGATCTCTAGTAGG 58.243 52.381 0.00 0.00 40.21 3.18
2851 3324 1.936547 CACTAGGCAGAGGAAAATCGC 59.063 52.381 0.00 0.00 0.00 4.58
2870 3343 7.473735 AGTTAGAAGAAGTGTCTGATGATCA 57.526 36.000 0.00 0.00 33.05 2.92
2875 3348 5.968528 ACGAGTTAGAAGAAGTGTCTGAT 57.031 39.130 0.00 0.00 33.05 2.90
2876 3349 5.507482 CCAACGAGTTAGAAGAAGTGTCTGA 60.507 44.000 0.00 0.00 33.05 3.27
2877 3350 4.681942 CCAACGAGTTAGAAGAAGTGTCTG 59.318 45.833 0.00 0.00 33.05 3.51
2900 3385 4.859798 ACAAGATCGATGAAGAACTCGAAC 59.140 41.667 0.54 0.00 45.90 3.95
2916 3401 9.547753 TTTATGCTCCTATTTACAGACAAGATC 57.452 33.333 0.00 0.00 0.00 2.75
2946 3435 2.279784 CGAGCGGCCTCAGAATCC 60.280 66.667 0.00 0.00 38.00 3.01
2976 3469 3.505480 AGATTCAGATTCATCCAGGGC 57.495 47.619 0.00 0.00 0.00 5.19
2977 3470 6.658391 GGATAAAGATTCAGATTCATCCAGGG 59.342 42.308 0.00 0.00 32.65 4.45
2978 3471 7.460071 AGGATAAAGATTCAGATTCATCCAGG 58.540 38.462 10.57 0.00 34.43 4.45
2979 3472 7.331440 CGAGGATAAAGATTCAGATTCATCCAG 59.669 40.741 10.57 3.86 34.43 3.86
2980 3473 7.157347 CGAGGATAAAGATTCAGATTCATCCA 58.843 38.462 10.57 0.00 34.43 3.41
2981 3474 6.593382 CCGAGGATAAAGATTCAGATTCATCC 59.407 42.308 0.00 0.00 0.00 3.51
2982 3475 7.382110 TCCGAGGATAAAGATTCAGATTCATC 58.618 38.462 0.00 0.00 0.00 2.92
2983 3476 7.308450 TCCGAGGATAAAGATTCAGATTCAT 57.692 36.000 0.00 0.00 0.00 2.57
2984 3477 6.731292 TCCGAGGATAAAGATTCAGATTCA 57.269 37.500 0.00 0.00 0.00 2.57
2985 3478 7.360776 GCATTCCGAGGATAAAGATTCAGATTC 60.361 40.741 0.00 0.00 0.00 2.52
2986 3479 6.429385 GCATTCCGAGGATAAAGATTCAGATT 59.571 38.462 0.00 0.00 0.00 2.40
2987 3480 5.936956 GCATTCCGAGGATAAAGATTCAGAT 59.063 40.000 0.00 0.00 0.00 2.90
2988 3481 5.163311 TGCATTCCGAGGATAAAGATTCAGA 60.163 40.000 0.00 0.00 0.00 3.27
2989 3482 5.059161 TGCATTCCGAGGATAAAGATTCAG 58.941 41.667 0.00 0.00 0.00 3.02
3005 3498 5.120674 GGTTGCACTAAAATTTCTGCATTCC 59.879 40.000 15.18 15.49 39.32 3.01
3043 3536 2.361757 CAGTCAGTAGGGATGCAGAGAG 59.638 54.545 0.00 0.00 0.00 3.20
3057 3550 1.896465 GGCCTACAAGAGTCAGTCAGT 59.104 52.381 0.00 0.00 0.00 3.41
3058 3551 1.895798 TGGCCTACAAGAGTCAGTCAG 59.104 52.381 3.32 0.00 0.00 3.51
3059 3552 1.618837 GTGGCCTACAAGAGTCAGTCA 59.381 52.381 3.32 0.00 0.00 3.41
3079 3572 2.434843 TAGCCATCACAGCTCCGGG 61.435 63.158 0.00 0.00 41.83 5.73
3090 3583 3.560068 CGAACCCACAATTAGTAGCCATC 59.440 47.826 0.00 0.00 0.00 3.51
3091 3584 3.054655 ACGAACCCACAATTAGTAGCCAT 60.055 43.478 0.00 0.00 0.00 4.40
3093 3586 2.676342 CACGAACCCACAATTAGTAGCC 59.324 50.000 0.00 0.00 0.00 3.93
3094 3587 3.332034 ACACGAACCCACAATTAGTAGC 58.668 45.455 0.00 0.00 0.00 3.58
3128 3643 1.887242 TGTCAAGTGGCACGACAGC 60.887 57.895 19.97 9.09 34.83 4.40
3129 3644 4.436515 TGTCAAGTGGCACGACAG 57.563 55.556 19.97 9.17 34.83 3.51
3130 3645 0.392706 ATCTGTCAAGTGGCACGACA 59.607 50.000 21.69 21.69 37.33 4.35
3133 3651 1.730501 ATCATCTGTCAAGTGGCACG 58.269 50.000 12.71 0.00 0.00 5.34
3156 3674 8.916654 CAAAATAAGCATCAGTACTAGGTATCG 58.083 37.037 0.00 0.00 0.00 2.92
3211 3824 4.044426 GTCAAGACAAGCAAATGGTGTTC 58.956 43.478 0.00 0.00 0.00 3.18
3214 3827 3.374745 GTGTCAAGACAAGCAAATGGTG 58.625 45.455 4.20 0.00 43.77 4.17
3218 3831 2.290641 GTCCGTGTCAAGACAAGCAAAT 59.709 45.455 4.20 0.00 43.77 2.32
3258 3871 2.473816 TGCTAATGCGCACTGATCTAC 58.526 47.619 14.90 0.00 43.34 2.59
3269 3882 2.867975 TCATGTCTCATGTGCTAATGCG 59.132 45.455 9.13 0.00 43.34 4.73
3297 3910 0.787183 GCAAGTTGCGTCTCTCAGAC 59.213 55.000 12.95 0.00 41.71 3.51
3331 3944 1.066858 ACTGCCACTCTACACCATTCG 60.067 52.381 0.00 0.00 0.00 3.34
3332 3945 2.770164 ACTGCCACTCTACACCATTC 57.230 50.000 0.00 0.00 0.00 2.67
3333 3946 2.903784 TGTACTGCCACTCTACACCATT 59.096 45.455 0.00 0.00 0.00 3.16
3334 3947 2.497675 CTGTACTGCCACTCTACACCAT 59.502 50.000 0.00 0.00 0.00 3.55
3380 3993 0.038618 TACAGCAGCAGTACACCACG 60.039 55.000 0.00 0.00 0.00 4.94
3388 4001 4.890581 AGCTTATACTACTACAGCAGCAGT 59.109 41.667 0.00 0.00 35.00 4.40
3394 4007 5.279056 CCCAGGAAGCTTATACTACTACAGC 60.279 48.000 0.00 0.00 0.00 4.40
3395 4008 5.279056 GCCCAGGAAGCTTATACTACTACAG 60.279 48.000 0.00 0.00 0.00 2.74
3396 4009 4.587684 GCCCAGGAAGCTTATACTACTACA 59.412 45.833 0.00 0.00 0.00 2.74
3403 4016 3.326297 AGAGATGCCCAGGAAGCTTATAC 59.674 47.826 0.00 0.00 0.00 1.47
3404 4017 3.591789 AGAGATGCCCAGGAAGCTTATA 58.408 45.455 0.00 0.00 0.00 0.98
3405 4018 2.416638 AGAGATGCCCAGGAAGCTTAT 58.583 47.619 0.00 0.00 0.00 1.73
3406 4019 1.885049 AGAGATGCCCAGGAAGCTTA 58.115 50.000 0.00 0.00 0.00 3.09
3407 4020 1.767681 CTAGAGATGCCCAGGAAGCTT 59.232 52.381 0.00 0.00 0.00 3.74
3425 4038 1.477923 GCCAACCAAACACACCCTCTA 60.478 52.381 0.00 0.00 0.00 2.43
3426 4039 0.755327 GCCAACCAAACACACCCTCT 60.755 55.000 0.00 0.00 0.00 3.69
3427 4040 1.739667 GCCAACCAAACACACCCTC 59.260 57.895 0.00 0.00 0.00 4.30
3428 4041 1.760480 GGCCAACCAAACACACCCT 60.760 57.895 0.00 0.00 35.26 4.34
3445 4058 2.285180 CTCCCCTCCTCTCCTGGG 59.715 72.222 0.00 0.00 40.59 4.45
3458 4071 2.342648 GTGTGTCGTCCCACTCCC 59.657 66.667 0.00 0.00 36.30 4.30
3463 4076 3.918977 CCCGTGTGTGTCGTCCCA 61.919 66.667 0.00 0.00 0.00 4.37
3466 4079 1.736645 CATCCCCGTGTGTGTCGTC 60.737 63.158 0.00 0.00 0.00 4.20
3471 4084 2.045045 ATGCCATCCCCGTGTGTG 60.045 61.111 0.00 0.00 0.00 3.82
3474 4087 4.175337 CCGATGCCATCCCCGTGT 62.175 66.667 0.00 0.00 0.00 4.49
3475 4088 3.182590 ATCCGATGCCATCCCCGTG 62.183 63.158 0.00 0.00 0.00 4.94
3476 4089 2.849162 ATCCGATGCCATCCCCGT 60.849 61.111 0.00 0.00 0.00 5.28
3477 4090 2.359107 CATCCGATGCCATCCCCG 60.359 66.667 0.00 0.00 0.00 5.73
3550 4172 0.896226 ACAGAAACGGAGTAGGAGGC 59.104 55.000 0.00 0.00 45.00 4.70
3551 4173 2.826725 AGAACAGAAACGGAGTAGGAGG 59.173 50.000 0.00 0.00 45.00 4.30
3573 4195 1.787847 CGCGATGGTCCAACAGAAC 59.212 57.895 0.00 0.00 0.00 3.01
3574 4196 2.032634 GCGCGATGGTCCAACAGAA 61.033 57.895 12.10 0.00 0.00 3.02
3575 4197 2.434185 GCGCGATGGTCCAACAGA 60.434 61.111 12.10 0.00 0.00 3.41
3576 4198 3.853330 CGCGCGATGGTCCAACAG 61.853 66.667 28.94 0.00 0.00 3.16


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.