Multiple sequence alignment - TraesCS2A01G194500

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS2A01G194500 chr2A 100.000 2824 0 0 1 2824 163096659 163099482 0.000000e+00 5216.0
1 TraesCS2A01G194500 chr2A 93.600 125 8 0 2700 2824 535400068 535400192 1.340000e-43 187.0
2 TraesCS2A01G194500 chr2A 90.769 130 11 1 2691 2819 81530734 81530863 3.740000e-39 172.0
3 TraesCS2A01G194500 chr2D 93.750 2704 84 29 1 2662 138517696 138515036 0.000000e+00 3978.0
4 TraesCS2A01G194500 chr2B 93.095 2317 89 27 378 2662 196542268 196539991 0.000000e+00 3326.0
5 TraesCS2A01G194500 chr2B 94.415 376 10 5 1 372 196543768 196543400 4.080000e-158 568.0
6 TraesCS2A01G194500 chr3A 92.913 127 9 0 2696 2822 181139479 181139353 4.800000e-43 185.0
7 TraesCS2A01G194500 chr3A 100.000 29 0 0 2673 2701 682251600 682251572 1.000000e-03 54.7
8 TraesCS2A01G194500 chr1A 93.443 122 8 0 2698 2819 14150701 14150822 6.210000e-42 182.0
9 TraesCS2A01G194500 chr1A 92.800 125 9 0 2698 2822 53994425 53994549 6.210000e-42 182.0
10 TraesCS2A01G194500 chrUn 94.068 118 7 0 2702 2819 32060409 32060526 2.240000e-41 180.0
11 TraesCS2A01G194500 chr4D 83.000 200 33 1 1038 1237 51616881 51616683 2.240000e-41 180.0
12 TraesCS2A01G194500 chr4A 83.000 200 33 1 1038 1237 544953077 544953275 2.240000e-41 180.0
13 TraesCS2A01G194500 chr4A 93.388 121 8 0 2702 2822 574836122 574836242 2.240000e-41 180.0
14 TraesCS2A01G194500 chr4A 79.333 150 31 0 1344 1493 544954256 544954405 3.850000e-19 106.0
15 TraesCS2A01G194500 chr6A 88.591 149 13 3 2674 2822 60158527 60158671 8.040000e-41 178.0
16 TraesCS2A01G194500 chr5A 92.683 123 9 0 2700 2822 89981656 89981534 8.040000e-41 178.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS2A01G194500 chr2A 163096659 163099482 2823 False 5216 5216 100.000 1 2824 1 chr2A.!!$F2 2823
1 TraesCS2A01G194500 chr2D 138515036 138517696 2660 True 3978 3978 93.750 1 2662 1 chr2D.!!$R1 2661
2 TraesCS2A01G194500 chr2B 196539991 196543768 3777 True 1947 3326 93.755 1 2662 2 chr2B.!!$R1 2661

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
364 374 0.098728 CGCAAAGTATCCCGCCAAAG 59.901 55.0 0.0 0.0 0.0 2.77 F
1279 2436 0.179067 TTCTTCTTGGCACGACGGTT 60.179 50.0 0.0 0.0 0.0 4.44 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1328 2487 0.528249 CTGCAACCCACAGCAAACAC 60.528 55.0 0.00 0.0 40.73 3.32 R
2784 3958 0.107116 TGTTTTGCCCACACGTAGGT 60.107 50.0 5.59 0.0 0.00 3.08 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
17 18 3.458163 TGGCGACCCGACCTGATC 61.458 66.667 0.00 0.00 31.60 2.92
76 77 2.434359 GAGGAAGGCACGAACCGG 60.434 66.667 0.00 0.00 33.69 5.28
77 78 4.699522 AGGAAGGCACGAACCGGC 62.700 66.667 0.00 0.00 33.69 6.13
120 121 1.947456 ACCGAAACAGAAAGCCAAGAC 59.053 47.619 0.00 0.00 0.00 3.01
152 153 4.626081 GCACCACTCCGTGTGCCT 62.626 66.667 3.33 0.00 44.92 4.75
257 267 0.679505 TTCACTGTTCCTGGACCTCG 59.320 55.000 0.00 0.00 0.00 4.63
350 360 5.950758 TTCTTGGTTATAGCTTTCGCAAA 57.049 34.783 0.00 0.00 39.10 3.68
359 369 0.248094 GCTTTCGCAAAGTATCCCGC 60.248 55.000 9.40 0.00 40.64 6.13
363 373 0.321741 TCGCAAAGTATCCCGCCAAA 60.322 50.000 0.00 0.00 0.00 3.28
364 374 0.098728 CGCAAAGTATCCCGCCAAAG 59.901 55.000 0.00 0.00 0.00 2.77
365 375 1.459450 GCAAAGTATCCCGCCAAAGA 58.541 50.000 0.00 0.00 0.00 2.52
482 1637 1.002502 GCTAAAGCGGTGGAGGGTT 60.003 57.895 0.00 0.00 0.00 4.11
528 1684 6.250104 CGATTTATCTTTGTGAGAAAGCTTGC 59.750 38.462 0.00 0.00 39.33 4.01
574 1730 0.378962 TCACAAGGTTCCAAAACGCG 59.621 50.000 3.53 3.53 36.16 6.01
854 2010 2.791256 CGCGCCACTTAACCCATG 59.209 61.111 0.00 0.00 0.00 3.66
925 2082 4.465446 TCCCTCCCTCCTCGGCTG 62.465 72.222 0.00 0.00 0.00 4.85
1265 2422 2.962421 AGGGAGATCGATGGTCTTCTTC 59.038 50.000 0.54 0.00 0.00 2.87
1266 2423 2.962421 GGGAGATCGATGGTCTTCTTCT 59.038 50.000 0.54 0.00 0.00 2.85
1267 2424 3.386402 GGGAGATCGATGGTCTTCTTCTT 59.614 47.826 0.54 0.00 0.00 2.52
1277 2434 0.319555 TCTTCTTCTTGGCACGACGG 60.320 55.000 0.00 0.00 0.00 4.79
1279 2436 0.179067 TTCTTCTTGGCACGACGGTT 60.179 50.000 0.00 0.00 0.00 4.44
1291 2450 1.138047 CGACGGTTCATCGGTAGCAC 61.138 60.000 0.00 0.00 35.92 4.40
1297 2456 5.005740 ACGGTTCATCGGTAGCACTATATA 58.994 41.667 0.00 0.00 0.00 0.86
1304 2463 8.293699 TCATCGGTAGCACTATATATGTTGAT 57.706 34.615 0.00 0.00 0.00 2.57
1308 2467 8.459635 TCGGTAGCACTATATATGTTGATCTTC 58.540 37.037 0.00 0.00 0.00 2.87
1328 2487 2.028839 TCTTTGGCTGATGTTTGCATGG 60.029 45.455 0.00 0.00 35.07 3.66
1341 2500 1.005867 GCATGGTGTTTGCTGTGGG 60.006 57.895 0.00 0.00 37.14 4.61
1941 3110 3.057946 CAGCTGAACTTTTTGGTAGCCTC 60.058 47.826 8.42 0.00 31.82 4.70
1942 3111 2.229062 GCTGAACTTTTTGGTAGCCTCC 59.771 50.000 0.00 0.00 0.00 4.30
1943 3112 2.820197 CTGAACTTTTTGGTAGCCTCCC 59.180 50.000 0.00 0.00 0.00 4.30
1944 3113 2.445525 TGAACTTTTTGGTAGCCTCCCT 59.554 45.455 0.00 0.00 0.00 4.20
2088 3257 5.335426 CCGATAATAGTACCGCTGCTTTCTA 60.335 44.000 0.00 0.00 0.00 2.10
2104 3273 3.678056 TTCTAAGCACCACCACTACTG 57.322 47.619 0.00 0.00 0.00 2.74
2133 3302 9.020731 ACAAAGATGGTTAAATAAGTAAGGGTG 57.979 33.333 0.00 0.00 0.00 4.61
2134 3303 7.640597 AAGATGGTTAAATAAGTAAGGGTGC 57.359 36.000 0.00 0.00 0.00 5.01
2149 3318 1.071605 GGTGCACACTAAAGCTCTCG 58.928 55.000 20.43 0.00 0.00 4.04
2150 3319 0.440371 GTGCACACTAAAGCTCTCGC 59.560 55.000 13.17 0.00 0.00 5.03
2215 3385 1.217882 GTGCTAATACGCCATCGCTT 58.782 50.000 0.00 0.00 39.84 4.68
2216 3386 1.070577 GTGCTAATACGCCATCGCTTG 60.071 52.381 0.00 0.00 39.84 4.01
2217 3387 0.110644 GCTAATACGCCATCGCTTGC 60.111 55.000 0.00 0.00 39.84 4.01
2218 3388 1.502231 CTAATACGCCATCGCTTGCT 58.498 50.000 0.00 0.00 39.84 3.91
2263 3437 4.214119 TGTTTCTTTTTGGAGATCTGCTCG 59.786 41.667 15.82 0.00 44.91 5.03
2353 3527 1.432514 CGTACAGCTTGTGATGCAGT 58.567 50.000 0.00 0.00 34.63 4.40
2354 3528 1.127397 CGTACAGCTTGTGATGCAGTG 59.873 52.381 0.00 0.00 32.60 3.66
2355 3529 2.146342 GTACAGCTTGTGATGCAGTGT 58.854 47.619 0.00 0.00 32.60 3.55
2356 3530 0.949397 ACAGCTTGTGATGCAGTGTG 59.051 50.000 0.00 0.00 31.91 3.82
2357 3531 0.240145 CAGCTTGTGATGCAGTGTGG 59.760 55.000 0.00 0.00 0.00 4.17
2366 3540 4.204028 GCAGTGTGGGTGTGGGGT 62.204 66.667 0.00 0.00 0.00 4.95
2383 3557 3.958798 TGGGGTTGCTGAGATAGTACTAC 59.041 47.826 4.31 0.00 0.00 2.73
2384 3558 4.216708 GGGGTTGCTGAGATAGTACTACT 58.783 47.826 4.31 4.80 0.00 2.57
2385 3559 4.038162 GGGGTTGCTGAGATAGTACTACTG 59.962 50.000 4.31 0.00 0.00 2.74
2408 3582 4.030452 AGCGGTTCAGCTTTGCGC 62.030 61.111 0.00 0.00 46.80 6.09
2604 3778 4.296265 GGGCAGAACGTCCGATTT 57.704 55.556 0.00 0.00 0.00 2.17
2605 3779 1.794222 GGGCAGAACGTCCGATTTG 59.206 57.895 0.00 0.00 0.00 2.32
2655 3829 0.321564 AGCTTTGCGCCTACACATGA 60.322 50.000 4.18 0.00 40.39 3.07
2662 3836 1.945387 CGCCTACACATGAATCAGCT 58.055 50.000 0.00 0.00 0.00 4.24
2663 3837 2.283298 CGCCTACACATGAATCAGCTT 58.717 47.619 0.00 0.00 0.00 3.74
2664 3838 2.679837 CGCCTACACATGAATCAGCTTT 59.320 45.455 0.00 0.00 0.00 3.51
2665 3839 3.242543 CGCCTACACATGAATCAGCTTTC 60.243 47.826 0.00 0.00 0.00 2.62
2666 3840 3.944015 GCCTACACATGAATCAGCTTTCT 59.056 43.478 0.00 0.00 0.00 2.52
2667 3841 4.397417 GCCTACACATGAATCAGCTTTCTT 59.603 41.667 0.00 0.00 0.00 2.52
2668 3842 5.105997 GCCTACACATGAATCAGCTTTCTTT 60.106 40.000 0.00 0.00 0.00 2.52
2669 3843 6.549952 CCTACACATGAATCAGCTTTCTTTC 58.450 40.000 0.00 0.00 0.00 2.62
2670 3844 6.373774 CCTACACATGAATCAGCTTTCTTTCT 59.626 38.462 0.00 0.00 0.00 2.52
2671 3845 6.010294 ACACATGAATCAGCTTTCTTTCTG 57.990 37.500 0.00 0.00 0.00 3.02
2672 3846 5.766670 ACACATGAATCAGCTTTCTTTCTGA 59.233 36.000 0.00 0.00 42.72 3.27
2673 3847 6.072618 ACACATGAATCAGCTTTCTTTCTGAG 60.073 38.462 0.00 0.00 41.95 3.35
2674 3848 5.415077 ACATGAATCAGCTTTCTTTCTGAGG 59.585 40.000 0.00 0.00 41.95 3.86
2675 3849 5.233083 TGAATCAGCTTTCTTTCTGAGGA 57.767 39.130 0.13 0.00 41.95 3.71
2676 3850 5.813383 TGAATCAGCTTTCTTTCTGAGGAT 58.187 37.500 0.13 0.00 41.95 3.24
2677 3851 5.879223 TGAATCAGCTTTCTTTCTGAGGATC 59.121 40.000 0.13 0.00 41.95 3.36
2687 3861 2.203056 TGAGGATCAATGCCGCCG 60.203 61.111 0.00 0.00 45.97 6.46
2688 3862 3.654020 GAGGATCAATGCCGCCGC 61.654 66.667 0.00 0.00 33.17 6.53
2689 3863 4.181010 AGGATCAATGCCGCCGCT 62.181 61.111 0.00 0.00 35.36 5.52
2690 3864 3.211963 GGATCAATGCCGCCGCTT 61.212 61.111 0.00 0.00 35.36 4.68
2691 3865 2.774799 GGATCAATGCCGCCGCTTT 61.775 57.895 0.00 0.00 35.36 3.51
2692 3866 1.444119 GGATCAATGCCGCCGCTTTA 61.444 55.000 0.00 0.00 35.36 1.85
2693 3867 0.593128 GATCAATGCCGCCGCTTTAT 59.407 50.000 0.00 0.00 35.36 1.40
2694 3868 1.001378 GATCAATGCCGCCGCTTTATT 60.001 47.619 0.00 0.00 35.36 1.40
2695 3869 1.669604 TCAATGCCGCCGCTTTATTA 58.330 45.000 0.00 0.00 35.36 0.98
2696 3870 1.332375 TCAATGCCGCCGCTTTATTAC 59.668 47.619 0.00 0.00 35.36 1.89
2697 3871 1.333619 CAATGCCGCCGCTTTATTACT 59.666 47.619 0.00 0.00 35.36 2.24
2698 3872 1.675552 ATGCCGCCGCTTTATTACTT 58.324 45.000 0.00 0.00 35.36 2.24
2699 3873 2.312722 TGCCGCCGCTTTATTACTTA 57.687 45.000 0.00 0.00 35.36 2.24
2700 3874 2.630158 TGCCGCCGCTTTATTACTTAA 58.370 42.857 0.00 0.00 35.36 1.85
2701 3875 2.610374 TGCCGCCGCTTTATTACTTAAG 59.390 45.455 0.00 0.00 35.36 1.85
2702 3876 2.032290 GCCGCCGCTTTATTACTTAAGG 60.032 50.000 7.53 0.00 0.00 2.69
2703 3877 3.460103 CCGCCGCTTTATTACTTAAGGA 58.540 45.455 7.53 0.00 0.00 3.36
2704 3878 3.246936 CCGCCGCTTTATTACTTAAGGAC 59.753 47.826 7.53 0.00 0.00 3.85
2705 3879 3.060740 CGCCGCTTTATTACTTAAGGACG 60.061 47.826 7.53 0.00 0.00 4.79
2706 3880 3.302935 GCCGCTTTATTACTTAAGGACGC 60.303 47.826 7.53 0.00 0.00 5.19
2707 3881 3.246936 CCGCTTTATTACTTAAGGACGCC 59.753 47.826 7.53 0.00 0.00 5.68
2708 3882 3.060740 CGCTTTATTACTTAAGGACGCCG 60.061 47.826 7.53 0.00 0.00 6.46
2709 3883 4.114794 GCTTTATTACTTAAGGACGCCGA 58.885 43.478 7.53 0.00 0.00 5.54
2710 3884 4.748600 GCTTTATTACTTAAGGACGCCGAT 59.251 41.667 7.53 0.00 0.00 4.18
2711 3885 5.922544 GCTTTATTACTTAAGGACGCCGATA 59.077 40.000 7.53 0.00 0.00 2.92
2712 3886 6.421801 GCTTTATTACTTAAGGACGCCGATAA 59.578 38.462 7.53 0.00 0.00 1.75
2713 3887 7.359014 GCTTTATTACTTAAGGACGCCGATAAG 60.359 40.741 7.53 15.69 35.48 1.73
2714 3888 4.989279 TTACTTAAGGACGCCGATAAGT 57.011 40.909 21.28 21.28 40.89 2.24
2715 3889 3.160777 ACTTAAGGACGCCGATAAGTG 57.839 47.619 19.09 6.12 38.55 3.16
2716 3890 2.494870 ACTTAAGGACGCCGATAAGTGT 59.505 45.455 19.09 0.00 38.55 3.55
2717 3891 2.857592 TAAGGACGCCGATAAGTGTC 57.142 50.000 0.00 0.00 44.74 3.67
2718 3892 0.892755 AAGGACGCCGATAAGTGTCA 59.107 50.000 7.45 0.00 46.77 3.58
2719 3893 1.112113 AGGACGCCGATAAGTGTCAT 58.888 50.000 7.45 0.00 46.77 3.06
2720 3894 2.304092 AGGACGCCGATAAGTGTCATA 58.696 47.619 7.45 0.00 46.77 2.15
2721 3895 2.034305 AGGACGCCGATAAGTGTCATAC 59.966 50.000 7.45 0.00 46.77 2.39
2722 3896 2.041966 GACGCCGATAAGTGTCATACG 58.958 52.381 0.00 0.00 44.81 3.06
2723 3897 1.402968 ACGCCGATAAGTGTCATACGT 59.597 47.619 0.00 0.00 0.00 3.57
2724 3898 1.779157 CGCCGATAAGTGTCATACGTG 59.221 52.381 0.00 0.00 0.00 4.49
2725 3899 2.793585 CGCCGATAAGTGTCATACGTGT 60.794 50.000 0.00 0.00 0.00 4.49
2726 3900 3.546616 CGCCGATAAGTGTCATACGTGTA 60.547 47.826 0.00 0.00 0.00 2.90
2727 3901 3.973135 GCCGATAAGTGTCATACGTGTAG 59.027 47.826 0.00 0.00 0.00 2.74
2728 3902 4.534168 CCGATAAGTGTCATACGTGTAGG 58.466 47.826 0.00 0.00 0.00 3.18
2729 3903 3.973135 CGATAAGTGTCATACGTGTAGGC 59.027 47.826 0.00 0.00 0.00 3.93
2730 3904 2.273370 AAGTGTCATACGTGTAGGCG 57.727 50.000 0.00 0.00 37.94 5.52
2732 3906 1.542915 AGTGTCATACGTGTAGGCGTT 59.457 47.619 0.00 0.00 43.04 4.84
2733 3907 2.749076 AGTGTCATACGTGTAGGCGTTA 59.251 45.455 0.00 0.00 43.04 3.18
2734 3908 3.103738 GTGTCATACGTGTAGGCGTTAG 58.896 50.000 0.00 0.00 43.04 2.34
2735 3909 2.097954 TGTCATACGTGTAGGCGTTAGG 59.902 50.000 0.00 0.00 43.04 2.69
2736 3910 2.355756 GTCATACGTGTAGGCGTTAGGA 59.644 50.000 0.00 0.00 43.04 2.94
2737 3911 3.016031 TCATACGTGTAGGCGTTAGGAA 58.984 45.455 0.00 0.00 43.04 3.36
2738 3912 3.065786 TCATACGTGTAGGCGTTAGGAAG 59.934 47.826 0.00 0.00 43.04 3.46
2739 3913 1.251251 ACGTGTAGGCGTTAGGAAGT 58.749 50.000 0.00 0.00 43.04 3.01
2740 3914 1.200948 ACGTGTAGGCGTTAGGAAGTC 59.799 52.381 0.00 0.00 43.04 3.01
2741 3915 1.468736 CGTGTAGGCGTTAGGAAGTCC 60.469 57.143 0.00 0.00 0.00 3.85
2742 3916 0.813184 TGTAGGCGTTAGGAAGTCCG 59.187 55.000 0.00 0.00 42.08 4.79
2743 3917 0.527169 GTAGGCGTTAGGAAGTCCGC 60.527 60.000 0.00 0.00 45.05 5.54
2745 3919 2.510918 GCGTTAGGAAGTCCGCCC 60.511 66.667 0.00 0.00 42.08 6.13
2746 3920 2.975536 CGTTAGGAAGTCCGCCCA 59.024 61.111 0.00 0.00 42.08 5.36
2747 3921 1.520666 CGTTAGGAAGTCCGCCCAT 59.479 57.895 0.00 0.00 42.08 4.00
2748 3922 0.748450 CGTTAGGAAGTCCGCCCATA 59.252 55.000 0.00 0.00 42.08 2.74
2749 3923 1.537562 CGTTAGGAAGTCCGCCCATAC 60.538 57.143 0.00 0.00 42.08 2.39
2750 3924 1.483415 GTTAGGAAGTCCGCCCATACA 59.517 52.381 0.00 0.00 42.08 2.29
2751 3925 2.097110 TAGGAAGTCCGCCCATACAT 57.903 50.000 0.00 0.00 42.08 2.29
2752 3926 1.213296 AGGAAGTCCGCCCATACATT 58.787 50.000 0.00 0.00 42.08 2.71
2753 3927 1.564348 AGGAAGTCCGCCCATACATTT 59.436 47.619 0.00 0.00 42.08 2.32
2754 3928 2.025321 AGGAAGTCCGCCCATACATTTT 60.025 45.455 0.00 0.00 42.08 1.82
2755 3929 3.201266 AGGAAGTCCGCCCATACATTTTA 59.799 43.478 0.00 0.00 42.08 1.52
2756 3930 4.141251 AGGAAGTCCGCCCATACATTTTAT 60.141 41.667 0.00 0.00 42.08 1.40
2757 3931 4.023193 GGAAGTCCGCCCATACATTTTATG 60.023 45.833 0.00 0.00 0.00 1.90
2758 3932 4.164843 AGTCCGCCCATACATTTTATGT 57.835 40.909 0.00 0.00 46.92 2.29
2759 3933 3.882888 AGTCCGCCCATACATTTTATGTG 59.117 43.478 2.68 0.00 44.60 3.21
2760 3934 3.004315 GTCCGCCCATACATTTTATGTGG 59.996 47.826 2.68 0.00 44.60 4.17
2761 3935 2.955660 CCGCCCATACATTTTATGTGGT 59.044 45.455 2.68 0.00 44.60 4.16
2762 3936 3.243367 CCGCCCATACATTTTATGTGGTG 60.243 47.826 2.68 2.75 44.60 4.17
2763 3937 3.380004 CGCCCATACATTTTATGTGGTGT 59.620 43.478 2.68 0.00 44.60 4.16
2764 3938 4.576873 CGCCCATACATTTTATGTGGTGTA 59.423 41.667 2.68 0.00 44.60 2.90
2765 3939 5.240623 CGCCCATACATTTTATGTGGTGTAT 59.759 40.000 2.68 0.00 44.60 2.29
2766 3940 6.428465 CGCCCATACATTTTATGTGGTGTATA 59.572 38.462 2.68 0.00 44.60 1.47
2767 3941 7.041030 CGCCCATACATTTTATGTGGTGTATAA 60.041 37.037 2.68 0.00 44.60 0.98
2768 3942 8.296713 GCCCATACATTTTATGTGGTGTATAAG 58.703 37.037 2.68 0.00 44.60 1.73
2769 3943 9.567776 CCCATACATTTTATGTGGTGTATAAGA 57.432 33.333 2.68 0.00 44.60 2.10
2774 3948 9.174166 ACATTTTATGTGGTGTATAAGAGGAAC 57.826 33.333 0.00 0.00 43.01 3.62
2775 3949 9.173021 CATTTTATGTGGTGTATAAGAGGAACA 57.827 33.333 0.00 0.00 0.00 3.18
2776 3950 9.747898 ATTTTATGTGGTGTATAAGAGGAACAA 57.252 29.630 0.00 0.00 0.00 2.83
2777 3951 8.556213 TTTATGTGGTGTATAAGAGGAACAAC 57.444 34.615 0.00 0.00 0.00 3.32
2778 3952 4.901868 TGTGGTGTATAAGAGGAACAACC 58.098 43.478 0.00 0.00 39.35 3.77
2779 3953 4.259356 GTGGTGTATAAGAGGAACAACCC 58.741 47.826 0.00 0.00 40.05 4.11
2780 3954 3.911260 TGGTGTATAAGAGGAACAACCCA 59.089 43.478 0.00 0.00 40.05 4.51
2781 3955 4.259356 GGTGTATAAGAGGAACAACCCAC 58.741 47.826 0.00 0.00 40.05 4.61
2782 3956 4.263156 GGTGTATAAGAGGAACAACCCACA 60.263 45.833 0.00 0.00 40.05 4.17
2783 3957 4.694037 GTGTATAAGAGGAACAACCCACAC 59.306 45.833 0.00 0.00 40.05 3.82
2784 3958 4.348461 TGTATAAGAGGAACAACCCACACA 59.652 41.667 0.00 0.00 40.05 3.72
2785 3959 2.052782 AAGAGGAACAACCCACACAC 57.947 50.000 0.00 0.00 40.05 3.82
2786 3960 0.182775 AGAGGAACAACCCACACACC 59.817 55.000 0.00 0.00 40.05 4.16
2787 3961 0.182775 GAGGAACAACCCACACACCT 59.817 55.000 0.00 0.00 40.05 4.00
2788 3962 1.418637 GAGGAACAACCCACACACCTA 59.581 52.381 0.00 0.00 40.05 3.08
2789 3963 1.142262 AGGAACAACCCACACACCTAC 59.858 52.381 0.00 0.00 40.05 3.18
2790 3964 1.223187 GAACAACCCACACACCTACG 58.777 55.000 0.00 0.00 0.00 3.51
2791 3965 0.542805 AACAACCCACACACCTACGT 59.457 50.000 0.00 0.00 0.00 3.57
2792 3966 0.179067 ACAACCCACACACCTACGTG 60.179 55.000 0.00 0.00 46.11 4.49
2800 3974 4.466133 CACCTACGTGTGGGCAAA 57.534 55.556 12.88 0.00 35.10 3.68
2801 3975 2.709170 CACCTACGTGTGGGCAAAA 58.291 52.632 12.88 0.00 35.10 2.44
2802 3976 0.309612 CACCTACGTGTGGGCAAAAC 59.690 55.000 12.88 0.00 35.10 2.43
2803 3977 0.107116 ACCTACGTGTGGGCAAAACA 60.107 50.000 12.88 0.00 34.14 2.83
2804 3978 1.025812 CCTACGTGTGGGCAAAACAA 58.974 50.000 0.00 0.00 0.00 2.83
2805 3979 1.611491 CCTACGTGTGGGCAAAACAAT 59.389 47.619 0.00 0.00 0.00 2.71
2806 3980 2.035321 CCTACGTGTGGGCAAAACAATT 59.965 45.455 0.00 0.00 0.00 2.32
2807 3981 3.253677 CCTACGTGTGGGCAAAACAATTA 59.746 43.478 0.00 0.00 0.00 1.40
2808 3982 3.363341 ACGTGTGGGCAAAACAATTAG 57.637 42.857 0.00 0.00 0.00 1.73
2809 3983 2.058057 CGTGTGGGCAAAACAATTAGC 58.942 47.619 0.00 0.00 0.00 3.09
2810 3984 2.288152 CGTGTGGGCAAAACAATTAGCT 60.288 45.455 0.00 0.00 0.00 3.32
2811 3985 3.317150 GTGTGGGCAAAACAATTAGCTC 58.683 45.455 0.00 0.00 0.00 4.09
2812 3986 2.298729 TGTGGGCAAAACAATTAGCTCC 59.701 45.455 0.00 0.00 0.00 4.70
2813 3987 1.899142 TGGGCAAAACAATTAGCTCCC 59.101 47.619 0.00 0.00 0.00 4.30
2814 3988 1.899142 GGGCAAAACAATTAGCTCCCA 59.101 47.619 0.00 0.00 32.89 4.37
2815 3989 2.353704 GGGCAAAACAATTAGCTCCCAC 60.354 50.000 0.00 0.00 32.89 4.61
2816 3990 2.298729 GGCAAAACAATTAGCTCCCACA 59.701 45.455 0.00 0.00 0.00 4.17
2817 3991 3.317150 GCAAAACAATTAGCTCCCACAC 58.683 45.455 0.00 0.00 0.00 3.82
2818 3992 3.564511 CAAAACAATTAGCTCCCACACG 58.435 45.455 0.00 0.00 0.00 4.49
2819 3993 1.165270 AACAATTAGCTCCCACACGC 58.835 50.000 0.00 0.00 0.00 5.34
2820 3994 0.676782 ACAATTAGCTCCCACACGCC 60.677 55.000 0.00 0.00 0.00 5.68
2821 3995 0.392998 CAATTAGCTCCCACACGCCT 60.393 55.000 0.00 0.00 0.00 5.52
2822 3996 0.328258 AATTAGCTCCCACACGCCTT 59.672 50.000 0.00 0.00 0.00 4.35
2823 3997 0.328258 ATTAGCTCCCACACGCCTTT 59.672 50.000 0.00 0.00 0.00 3.11
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
8 9 2.049985 GCGATCGGGATCAGGTCG 60.050 66.667 18.30 15.85 37.69 4.79
120 121 1.950630 GTGCAAGTTGGCAAAGGCG 60.951 57.895 0.00 0.00 46.93 5.52
257 267 0.780002 CAGCACGCACAAATTCTTGC 59.220 50.000 1.87 1.87 35.84 4.01
386 1519 3.247442 TCGTTGTCCGATTATGTGTGTC 58.753 45.455 0.00 0.00 41.60 3.67
463 1610 2.124695 CCCTCCACCGCTTTAGCC 60.125 66.667 0.00 0.00 37.91 3.93
466 1613 0.988832 ATGAACCCTCCACCGCTTTA 59.011 50.000 0.00 0.00 0.00 1.85
511 1667 2.378806 CACGCAAGCTTTCTCACAAAG 58.621 47.619 0.00 0.00 45.62 2.77
718 1874 2.438434 GATTGGACAGCGGGTGGG 60.438 66.667 12.33 0.00 0.00 4.61
844 2000 1.677820 GGGTGACCGTCATGGGTTAAG 60.678 57.143 4.13 0.00 44.64 1.85
1107 2264 1.067749 CTCGATCCAGAGCAGGCAG 59.932 63.158 0.00 0.00 0.00 4.85
1244 2401 2.765689 AGAAGACCATCGATCTCCCT 57.234 50.000 0.00 0.00 0.00 4.20
1265 2422 1.787847 GATGAACCGTCGTGCCAAG 59.212 57.895 0.00 0.00 0.00 3.61
1266 2423 2.024868 CGATGAACCGTCGTGCCAA 61.025 57.895 0.00 0.00 37.99 4.52
1267 2424 2.431771 CGATGAACCGTCGTGCCA 60.432 61.111 0.00 0.00 37.99 4.92
1277 2434 8.027189 TCAACATATATAGTGCTACCGATGAAC 58.973 37.037 0.00 0.00 0.00 3.18
1279 2436 7.696992 TCAACATATATAGTGCTACCGATGA 57.303 36.000 0.00 0.00 0.00 2.92
1291 2450 9.716531 TCAGCCAAAGAAGATCAACATATATAG 57.283 33.333 0.00 0.00 0.00 1.31
1297 2456 5.014858 ACATCAGCCAAAGAAGATCAACAT 58.985 37.500 0.00 0.00 0.00 2.71
1304 2463 2.957680 TGCAAACATCAGCCAAAGAAGA 59.042 40.909 0.00 0.00 0.00 2.87
1308 2467 2.289195 ACCATGCAAACATCAGCCAAAG 60.289 45.455 0.00 0.00 32.87 2.77
1318 2477 1.206610 ACAGCAAACACCATGCAAACA 59.793 42.857 0.00 0.00 46.22 2.83
1328 2487 0.528249 CTGCAACCCACAGCAAACAC 60.528 55.000 0.00 0.00 40.73 3.32
1341 2500 2.117941 GACTGGAACACGGCTGCAAC 62.118 60.000 0.50 0.00 0.00 4.17
1607 2766 2.657237 CAGGTCTTCCTCGGCGTT 59.343 61.111 6.85 0.00 43.07 4.84
2004 3173 0.732880 GTCATCTCCGTGTCACACCG 60.733 60.000 1.24 0.00 0.00 4.94
2088 3257 1.002087 GTAGCAGTAGTGGTGGTGCTT 59.998 52.381 12.54 0.00 43.80 3.91
2130 3299 1.071605 CGAGAGCTTTAGTGTGCACC 58.928 55.000 15.69 5.76 0.00 5.01
2149 3318 1.343069 ATCACCCTCCGGATAAGAGC 58.657 55.000 3.57 0.00 0.00 4.09
2150 3319 3.056465 GCTAATCACCCTCCGGATAAGAG 60.056 52.174 3.57 0.00 0.00 2.85
2163 3333 0.811616 CTGGGCAGACGCTAATCACC 60.812 60.000 0.00 0.00 38.60 4.02
2211 3381 1.746220 AGAGTACTGTAGGAGCAAGCG 59.254 52.381 0.00 0.00 0.00 4.68
2215 3385 1.408405 CGGGAGAGTACTGTAGGAGCA 60.408 57.143 0.00 0.00 0.00 4.26
2216 3386 1.134159 TCGGGAGAGTACTGTAGGAGC 60.134 57.143 0.00 0.00 0.00 4.70
2217 3387 3.495434 ATCGGGAGAGTACTGTAGGAG 57.505 52.381 0.00 0.00 45.48 3.69
2218 3388 3.053842 ACAATCGGGAGAGTACTGTAGGA 60.054 47.826 0.00 0.00 45.48 2.94
2263 3437 2.162809 ACCAGTTCACAAAAACACGGAC 59.837 45.455 0.00 0.00 31.73 4.79
2353 3527 3.425014 AGCAACCCCACACCCACA 61.425 61.111 0.00 0.00 0.00 4.17
2354 3528 2.912025 CAGCAACCCCACACCCAC 60.912 66.667 0.00 0.00 0.00 4.61
2355 3529 3.099841 TCAGCAACCCCACACCCA 61.100 61.111 0.00 0.00 0.00 4.51
2356 3530 2.142292 ATCTCAGCAACCCCACACCC 62.142 60.000 0.00 0.00 0.00 4.61
2357 3531 0.618458 TATCTCAGCAACCCCACACC 59.382 55.000 0.00 0.00 0.00 4.16
2366 3540 4.580995 GCTCCAGTAGTACTATCTCAGCAA 59.419 45.833 5.75 0.00 0.00 3.91
2383 3557 2.507992 CTGAACCGCTCGCTCCAG 60.508 66.667 0.00 0.00 0.00 3.86
2384 3558 4.742201 GCTGAACCGCTCGCTCCA 62.742 66.667 0.00 0.00 0.00 3.86
2385 3559 3.941657 AAGCTGAACCGCTCGCTCC 62.942 63.158 0.00 0.00 39.86 4.70
2559 3733 5.877564 ACAAATGGAAATTGGACGTTTTTGT 59.122 32.000 0.00 0.00 32.02 2.83
2561 3735 6.993786 AACAAATGGAAATTGGACGTTTTT 57.006 29.167 0.00 0.00 32.02 1.94
2604 3778 3.208383 CACGGCCACTGCACAACA 61.208 61.111 2.24 0.00 40.13 3.33
2605 3779 4.629115 GCACGGCCACTGCACAAC 62.629 66.667 15.99 0.00 40.13 3.32
2643 3817 1.945387 AGCTGATTCATGTGTAGGCG 58.055 50.000 0.00 0.00 0.00 5.52
2646 3820 7.118825 TCAGAAAGAAAGCTGATTCATGTGTAG 59.881 37.037 1.17 0.00 36.31 2.74
2648 3822 5.766670 TCAGAAAGAAAGCTGATTCATGTGT 59.233 36.000 1.17 0.00 36.31 3.72
2655 3829 5.813383 TGATCCTCAGAAAGAAAGCTGATT 58.187 37.500 0.00 0.00 40.11 2.57
2662 3836 3.691118 CGGCATTGATCCTCAGAAAGAAA 59.309 43.478 0.00 0.00 0.00 2.52
2663 3837 3.273434 CGGCATTGATCCTCAGAAAGAA 58.727 45.455 0.00 0.00 0.00 2.52
2664 3838 2.910199 CGGCATTGATCCTCAGAAAGA 58.090 47.619 0.00 0.00 0.00 2.52
2665 3839 1.332997 GCGGCATTGATCCTCAGAAAG 59.667 52.381 0.00 0.00 0.00 2.62
2666 3840 1.382522 GCGGCATTGATCCTCAGAAA 58.617 50.000 0.00 0.00 0.00 2.52
2667 3841 0.464373 GGCGGCATTGATCCTCAGAA 60.464 55.000 3.07 0.00 0.00 3.02
2668 3842 1.146930 GGCGGCATTGATCCTCAGA 59.853 57.895 3.07 0.00 0.00 3.27
2669 3843 2.249535 CGGCGGCATTGATCCTCAG 61.250 63.158 10.53 0.00 0.00 3.35
2670 3844 2.203056 CGGCGGCATTGATCCTCA 60.203 61.111 10.53 0.00 0.00 3.86
2671 3845 3.654020 GCGGCGGCATTGATCCTC 61.654 66.667 9.78 0.00 39.62 3.71
2672 3846 3.704231 AAGCGGCGGCATTGATCCT 62.704 57.895 19.21 0.00 43.41 3.24
2673 3847 1.444119 TAAAGCGGCGGCATTGATCC 61.444 55.000 19.21 0.00 43.41 3.36
2674 3848 0.593128 ATAAAGCGGCGGCATTGATC 59.407 50.000 19.21 0.00 43.41 2.92
2675 3849 1.032014 AATAAAGCGGCGGCATTGAT 58.968 45.000 19.21 5.86 43.41 2.57
2676 3850 1.332375 GTAATAAAGCGGCGGCATTGA 59.668 47.619 19.21 3.74 43.41 2.57
2677 3851 1.333619 AGTAATAAAGCGGCGGCATTG 59.666 47.619 19.21 0.00 43.41 2.82
2678 3852 1.675552 AGTAATAAAGCGGCGGCATT 58.324 45.000 19.21 15.16 43.41 3.56
2679 3853 1.675552 AAGTAATAAAGCGGCGGCAT 58.324 45.000 19.21 3.10 43.41 4.40
2680 3854 2.312722 TAAGTAATAAAGCGGCGGCA 57.687 45.000 19.21 0.00 43.41 5.69
2681 3855 2.032290 CCTTAAGTAATAAAGCGGCGGC 60.032 50.000 9.78 8.43 40.37 6.53
2682 3856 3.246936 GTCCTTAAGTAATAAAGCGGCGG 59.753 47.826 9.78 0.00 0.00 6.13
2683 3857 3.060740 CGTCCTTAAGTAATAAAGCGGCG 60.061 47.826 0.51 0.51 0.00 6.46
2684 3858 3.302935 GCGTCCTTAAGTAATAAAGCGGC 60.303 47.826 0.97 0.00 0.00 6.53
2685 3859 3.246936 GGCGTCCTTAAGTAATAAAGCGG 59.753 47.826 0.97 0.00 0.00 5.52
2686 3860 3.060740 CGGCGTCCTTAAGTAATAAAGCG 60.061 47.826 0.00 0.00 0.00 4.68
2687 3861 4.114794 TCGGCGTCCTTAAGTAATAAAGC 58.885 43.478 6.85 0.00 0.00 3.51
2688 3862 7.650903 ACTTATCGGCGTCCTTAAGTAATAAAG 59.349 37.037 18.20 5.95 32.35 1.85
2689 3863 7.436080 CACTTATCGGCGTCCTTAAGTAATAAA 59.564 37.037 18.78 0.00 32.35 1.40
2690 3864 6.919662 CACTTATCGGCGTCCTTAAGTAATAA 59.080 38.462 18.78 7.97 32.35 1.40
2691 3865 6.039717 ACACTTATCGGCGTCCTTAAGTAATA 59.960 38.462 18.78 1.71 32.35 0.98
2692 3866 5.163478 ACACTTATCGGCGTCCTTAAGTAAT 60.163 40.000 18.78 11.98 32.35 1.89
2693 3867 4.158394 ACACTTATCGGCGTCCTTAAGTAA 59.842 41.667 18.78 0.00 32.35 2.24
2694 3868 3.696051 ACACTTATCGGCGTCCTTAAGTA 59.304 43.478 18.78 0.00 32.35 2.24
2695 3869 2.494870 ACACTTATCGGCGTCCTTAAGT 59.505 45.455 6.85 12.94 33.47 2.24
2696 3870 3.114065 GACACTTATCGGCGTCCTTAAG 58.886 50.000 6.85 12.35 0.00 1.85
2697 3871 2.492881 TGACACTTATCGGCGTCCTTAA 59.507 45.455 6.85 0.80 0.00 1.85
2698 3872 2.093890 TGACACTTATCGGCGTCCTTA 58.906 47.619 6.85 0.00 0.00 2.69
2699 3873 0.892755 TGACACTTATCGGCGTCCTT 59.107 50.000 6.85 0.00 0.00 3.36
2700 3874 1.112113 ATGACACTTATCGGCGTCCT 58.888 50.000 6.85 0.00 0.00 3.85
2701 3875 2.391879 GTATGACACTTATCGGCGTCC 58.608 52.381 6.85 0.00 0.00 4.79
2702 3876 2.041966 CGTATGACACTTATCGGCGTC 58.958 52.381 6.85 0.00 0.00 5.19
2703 3877 1.402968 ACGTATGACACTTATCGGCGT 59.597 47.619 6.85 0.00 0.00 5.68
2704 3878 1.779157 CACGTATGACACTTATCGGCG 59.221 52.381 0.00 0.00 0.00 6.46
2705 3879 2.805845 ACACGTATGACACTTATCGGC 58.194 47.619 0.00 0.00 0.00 5.54
2706 3880 4.534168 CCTACACGTATGACACTTATCGG 58.466 47.826 0.00 0.00 0.00 4.18
2707 3881 3.973135 GCCTACACGTATGACACTTATCG 59.027 47.826 0.00 0.00 0.00 2.92
2708 3882 3.973135 CGCCTACACGTATGACACTTATC 59.027 47.826 0.00 0.00 0.00 1.75
2709 3883 3.379372 ACGCCTACACGTATGACACTTAT 59.621 43.478 0.00 0.00 46.19 1.73
2710 3884 2.749076 ACGCCTACACGTATGACACTTA 59.251 45.455 0.00 0.00 46.19 2.24
2711 3885 1.542915 ACGCCTACACGTATGACACTT 59.457 47.619 0.00 0.00 46.19 3.16
2712 3886 1.171308 ACGCCTACACGTATGACACT 58.829 50.000 0.00 0.00 46.19 3.55
2713 3887 3.708195 ACGCCTACACGTATGACAC 57.292 52.632 0.00 0.00 46.19 3.67
2721 3895 1.468736 GGACTTCCTAACGCCTACACG 60.469 57.143 0.00 0.00 39.50 4.49
2722 3896 1.468736 CGGACTTCCTAACGCCTACAC 60.469 57.143 0.00 0.00 0.00 2.90
2723 3897 0.813184 CGGACTTCCTAACGCCTACA 59.187 55.000 0.00 0.00 0.00 2.74
2724 3898 0.527169 GCGGACTTCCTAACGCCTAC 60.527 60.000 0.00 0.00 45.70 3.18
2725 3899 1.811860 GCGGACTTCCTAACGCCTA 59.188 57.895 0.00 0.00 45.70 3.93
2726 3900 2.577593 GCGGACTTCCTAACGCCT 59.422 61.111 0.00 0.00 45.70 5.52
2729 3903 0.748450 TATGGGCGGACTTCCTAACG 59.252 55.000 0.00 0.00 0.00 3.18
2730 3904 1.483415 TGTATGGGCGGACTTCCTAAC 59.517 52.381 0.00 0.00 0.00 2.34
2731 3905 1.868713 TGTATGGGCGGACTTCCTAA 58.131 50.000 0.00 0.00 0.00 2.69
2732 3906 2.097110 ATGTATGGGCGGACTTCCTA 57.903 50.000 0.00 0.00 0.00 2.94
2733 3907 1.213296 AATGTATGGGCGGACTTCCT 58.787 50.000 0.00 0.00 0.00 3.36
2734 3908 2.052782 AAATGTATGGGCGGACTTCC 57.947 50.000 0.00 0.00 0.00 3.46
2735 3909 4.578928 ACATAAAATGTATGGGCGGACTTC 59.421 41.667 0.00 0.00 42.78 3.01
2736 3910 4.338118 CACATAAAATGTATGGGCGGACTT 59.662 41.667 0.00 0.00 42.70 3.01
2737 3911 3.882888 CACATAAAATGTATGGGCGGACT 59.117 43.478 0.00 0.00 42.70 3.85
2738 3912 3.004315 CCACATAAAATGTATGGGCGGAC 59.996 47.826 0.00 0.00 42.70 4.79
2739 3913 3.218453 CCACATAAAATGTATGGGCGGA 58.782 45.455 0.00 0.00 42.70 5.54
2740 3914 2.955660 ACCACATAAAATGTATGGGCGG 59.044 45.455 0.00 0.00 42.70 6.13
2741 3915 3.380004 ACACCACATAAAATGTATGGGCG 59.620 43.478 0.00 0.00 42.70 6.13
2742 3916 6.648879 ATACACCACATAAAATGTATGGGC 57.351 37.500 0.00 0.00 42.70 5.36
2743 3917 9.567776 TCTTATACACCACATAAAATGTATGGG 57.432 33.333 6.10 0.00 42.70 4.00
2748 3922 9.174166 GTTCCTCTTATACACCACATAAAATGT 57.826 33.333 0.00 0.00 46.22 2.71
2749 3923 9.173021 TGTTCCTCTTATACACCACATAAAATG 57.827 33.333 0.00 0.00 0.00 2.32
2750 3924 9.747898 TTGTTCCTCTTATACACCACATAAAAT 57.252 29.630 0.00 0.00 0.00 1.82
2751 3925 9.005777 GTTGTTCCTCTTATACACCACATAAAA 57.994 33.333 0.00 0.00 0.00 1.52
2752 3926 7.608761 GGTTGTTCCTCTTATACACCACATAAA 59.391 37.037 0.00 0.00 0.00 1.40
2753 3927 7.107542 GGTTGTTCCTCTTATACACCACATAA 58.892 38.462 0.00 0.00 0.00 1.90
2754 3928 6.352394 GGGTTGTTCCTCTTATACACCACATA 60.352 42.308 0.00 0.00 36.25 2.29
2755 3929 5.497474 GGTTGTTCCTCTTATACACCACAT 58.503 41.667 0.00 0.00 0.00 3.21
2756 3930 4.263156 GGGTTGTTCCTCTTATACACCACA 60.263 45.833 0.00 0.00 36.25 4.17
2757 3931 4.259356 GGGTTGTTCCTCTTATACACCAC 58.741 47.826 0.00 0.00 36.25 4.16
2758 3932 3.911260 TGGGTTGTTCCTCTTATACACCA 59.089 43.478 0.00 0.00 36.25 4.17
2759 3933 4.259356 GTGGGTTGTTCCTCTTATACACC 58.741 47.826 0.00 0.00 36.25 4.16
2760 3934 4.694037 GTGTGGGTTGTTCCTCTTATACAC 59.306 45.833 0.00 0.00 36.25 2.90
2761 3935 4.348461 TGTGTGGGTTGTTCCTCTTATACA 59.652 41.667 0.00 0.00 36.25 2.29
2762 3936 4.694037 GTGTGTGGGTTGTTCCTCTTATAC 59.306 45.833 0.00 0.00 36.25 1.47
2763 3937 4.263156 GGTGTGTGGGTTGTTCCTCTTATA 60.263 45.833 0.00 0.00 36.25 0.98
2764 3938 3.497942 GGTGTGTGGGTTGTTCCTCTTAT 60.498 47.826 0.00 0.00 36.25 1.73
2765 3939 2.158726 GGTGTGTGGGTTGTTCCTCTTA 60.159 50.000 0.00 0.00 36.25 2.10
2766 3940 1.409661 GGTGTGTGGGTTGTTCCTCTT 60.410 52.381 0.00 0.00 36.25 2.85
2767 3941 0.182775 GGTGTGTGGGTTGTTCCTCT 59.817 55.000 0.00 0.00 36.25 3.69
2768 3942 0.182775 AGGTGTGTGGGTTGTTCCTC 59.817 55.000 0.00 0.00 36.25 3.71
2769 3943 1.142262 GTAGGTGTGTGGGTTGTTCCT 59.858 52.381 0.00 0.00 36.25 3.36
2770 3944 1.601166 GTAGGTGTGTGGGTTGTTCC 58.399 55.000 0.00 0.00 0.00 3.62
2771 3945 1.223187 CGTAGGTGTGTGGGTTGTTC 58.777 55.000 0.00 0.00 0.00 3.18
2772 3946 0.542805 ACGTAGGTGTGTGGGTTGTT 59.457 50.000 0.00 0.00 0.00 2.83
2773 3947 0.179067 CACGTAGGTGTGTGGGTTGT 60.179 55.000 7.41 0.00 39.38 3.32
2774 3948 2.612200 CACGTAGGTGTGTGGGTTG 58.388 57.895 7.41 0.00 39.38 3.77
2784 3958 0.107116 TGTTTTGCCCACACGTAGGT 60.107 50.000 5.59 0.00 0.00 3.08
2785 3959 1.025812 TTGTTTTGCCCACACGTAGG 58.974 50.000 0.00 0.00 0.00 3.18
2786 3960 3.363341 AATTGTTTTGCCCACACGTAG 57.637 42.857 0.00 0.00 0.00 3.51
2787 3961 3.304794 GCTAATTGTTTTGCCCACACGTA 60.305 43.478 0.00 0.00 0.00 3.57
2788 3962 2.544903 GCTAATTGTTTTGCCCACACGT 60.545 45.455 0.00 0.00 0.00 4.49
2789 3963 2.058057 GCTAATTGTTTTGCCCACACG 58.942 47.619 0.00 0.00 0.00 4.49
2790 3964 3.317150 GAGCTAATTGTTTTGCCCACAC 58.683 45.455 0.00 0.00 34.62 3.82
2791 3965 2.298729 GGAGCTAATTGTTTTGCCCACA 59.701 45.455 0.00 0.00 34.62 4.17
2792 3966 2.353704 GGGAGCTAATTGTTTTGCCCAC 60.354 50.000 0.00 0.00 34.62 4.61
2793 3967 1.899142 GGGAGCTAATTGTTTTGCCCA 59.101 47.619 0.00 0.00 34.62 5.36
2794 3968 1.899142 TGGGAGCTAATTGTTTTGCCC 59.101 47.619 0.00 0.00 34.62 5.36
2795 3969 2.298729 TGTGGGAGCTAATTGTTTTGCC 59.701 45.455 0.00 0.00 34.62 4.52
2796 3970 3.317150 GTGTGGGAGCTAATTGTTTTGC 58.683 45.455 0.00 0.00 34.34 3.68
2797 3971 3.564511 CGTGTGGGAGCTAATTGTTTTG 58.435 45.455 0.00 0.00 0.00 2.44
2798 3972 2.030274 GCGTGTGGGAGCTAATTGTTTT 60.030 45.455 0.00 0.00 0.00 2.43
2799 3973 1.539827 GCGTGTGGGAGCTAATTGTTT 59.460 47.619 0.00 0.00 0.00 2.83
2800 3974 1.165270 GCGTGTGGGAGCTAATTGTT 58.835 50.000 0.00 0.00 0.00 2.83
2801 3975 0.676782 GGCGTGTGGGAGCTAATTGT 60.677 55.000 0.00 0.00 0.00 2.71
2802 3976 0.392998 AGGCGTGTGGGAGCTAATTG 60.393 55.000 0.00 0.00 0.00 2.32
2803 3977 0.328258 AAGGCGTGTGGGAGCTAATT 59.672 50.000 0.00 0.00 0.00 1.40
2804 3978 0.328258 AAAGGCGTGTGGGAGCTAAT 59.672 50.000 0.00 0.00 0.00 1.73
2805 3979 1.758592 AAAGGCGTGTGGGAGCTAA 59.241 52.632 0.00 0.00 0.00 3.09
2806 3980 3.478780 AAAGGCGTGTGGGAGCTA 58.521 55.556 0.00 0.00 0.00 3.32


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.