Multiple sequence alignment - TraesCS2A01G194300

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS2A01G194300 chr2A 100.000 4220 0 0 1 4220 162296628 162292409 0.000000e+00 7793
1 TraesCS2A01G194300 chr2A 83.380 710 84 26 1 691 693439431 693440125 9.960000e-176 627
2 TraesCS2A01G194300 chr2D 93.652 1985 78 16 2252 4220 138753031 138754983 0.000000e+00 2924
3 TraesCS2A01G194300 chr2D 97.066 1568 34 6 696 2255 138751436 138752999 0.000000e+00 2630
4 TraesCS2A01G194300 chr2B 92.992 1584 69 24 701 2255 197207853 197209423 0.000000e+00 2272
5 TraesCS2A01G194300 chr2B 95.031 1429 57 6 2252 3678 197209462 197210878 0.000000e+00 2233
6 TraesCS2A01G194300 chr2B 96.774 558 11 2 3664 4220 197210895 197211446 0.000000e+00 924
7 TraesCS2A01G194300 chr6D 85.632 696 85 11 1 692 324813664 324812980 0.000000e+00 717
8 TraesCS2A01G194300 chr3B 85.345 696 86 15 1 692 513493964 513493281 0.000000e+00 706
9 TraesCS2A01G194300 chr1D 84.429 700 91 15 1 691 247134046 247133356 0.000000e+00 673
10 TraesCS2A01G194300 chr1D 83.121 705 94 20 1 692 430426184 430426876 1.670000e-173 619
11 TraesCS2A01G194300 chr4D 84.380 685 82 18 1 674 429752890 429752220 0.000000e+00 649
12 TraesCS2A01G194300 chr1A 82.808 698 96 18 1 691 521267745 521267065 1.680000e-168 603
13 TraesCS2A01G194300 chr5A 82.991 682 95 17 18 688 78903489 78904160 7.810000e-167 597
14 TraesCS2A01G194300 chr5A 81.766 702 102 19 1 692 617518085 617518770 7.920000e-157 564


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS2A01G194300 chr2A 162292409 162296628 4219 True 7793.000000 7793 100.000000 1 4220 1 chr2A.!!$R1 4219
1 TraesCS2A01G194300 chr2A 693439431 693440125 694 False 627.000000 627 83.380000 1 691 1 chr2A.!!$F1 690
2 TraesCS2A01G194300 chr2D 138751436 138754983 3547 False 2777.000000 2924 95.359000 696 4220 2 chr2D.!!$F1 3524
3 TraesCS2A01G194300 chr2B 197207853 197211446 3593 False 1809.666667 2272 94.932333 701 4220 3 chr2B.!!$F1 3519
4 TraesCS2A01G194300 chr6D 324812980 324813664 684 True 717.000000 717 85.632000 1 692 1 chr6D.!!$R1 691
5 TraesCS2A01G194300 chr3B 513493281 513493964 683 True 706.000000 706 85.345000 1 692 1 chr3B.!!$R1 691
6 TraesCS2A01G194300 chr1D 247133356 247134046 690 True 673.000000 673 84.429000 1 691 1 chr1D.!!$R1 690
7 TraesCS2A01G194300 chr1D 430426184 430426876 692 False 619.000000 619 83.121000 1 692 1 chr1D.!!$F1 691
8 TraesCS2A01G194300 chr4D 429752220 429752890 670 True 649.000000 649 84.380000 1 674 1 chr4D.!!$R1 673
9 TraesCS2A01G194300 chr1A 521267065 521267745 680 True 603.000000 603 82.808000 1 691 1 chr1A.!!$R1 690
10 TraesCS2A01G194300 chr5A 78903489 78904160 671 False 597.000000 597 82.991000 18 688 1 chr5A.!!$F1 670
11 TraesCS2A01G194300 chr5A 617518085 617518770 685 False 564.000000 564 81.766000 1 692 1 chr5A.!!$F2 691

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
945 1001 0.302890 CAATCAGCCGAACATCTCGC 59.697 55.0 0.0 0.0 46.71 5.03 F
2691 2847 0.254747 CCGACCTCTCACCTCTCTCT 59.745 60.0 0.0 0.0 0.00 3.10 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2830 2986 0.037303 CTCAGCTTGCTCCCTTGGAA 59.963 55.0 0.00 0.0 0.00 3.53 R
3511 3691 0.492730 TACCAGGGTCCCAGTTACCA 59.507 55.0 11.55 0.0 38.87 3.25 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
73 77 1.603802 CTCATGAAAGCACAACCGTGT 59.396 47.619 0.00 0.00 45.50 4.49
155 163 1.073199 CCTTTCCAAGAGGCACGGT 59.927 57.895 0.00 0.00 33.74 4.83
214 222 1.160137 GCAAAACCATGACTCTCGCT 58.840 50.000 0.00 0.00 0.00 4.93
320 337 4.482386 CGGAAGTAAAATCGTGACTCTCA 58.518 43.478 0.00 0.00 0.00 3.27
442 465 3.181548 CGAGACTCTCGCGAAAGAAAAAG 60.182 47.826 17.91 0.00 46.75 2.27
559 591 5.317559 GTTTAAAAAGCCAAAAACACGTGG 58.682 37.500 21.57 1.15 38.00 4.94
572 611 7.201741 CCAAAAACACGTGGGGAAAAATAAAAT 60.202 33.333 21.57 0.00 0.00 1.82
575 617 8.959705 AAACACGTGGGGAAAAATAAAATAAA 57.040 26.923 21.57 0.00 0.00 1.40
576 618 8.959705 AACACGTGGGGAAAAATAAAATAAAA 57.040 26.923 21.57 0.00 0.00 1.52
577 619 8.959705 ACACGTGGGGAAAAATAAAATAAAAA 57.040 26.923 21.57 0.00 0.00 1.94
578 620 8.828644 ACACGTGGGGAAAAATAAAATAAAAAC 58.171 29.630 21.57 0.00 0.00 2.43
625 667 3.355816 GACACGTGGCGAATGGATA 57.644 52.632 21.57 0.00 0.00 2.59
641 683 1.469251 GGATAAGAGCGCGTCAAGTGA 60.469 52.381 8.43 0.00 0.00 3.41
671 713 2.872858 GTTGCGAGTCTTTTGAAGGAGT 59.127 45.455 0.00 0.00 0.00 3.85
692 734 3.365220 GTGCTCGTTAACTAGTTGCTCTG 59.635 47.826 18.56 6.84 0.00 3.35
693 735 3.005472 TGCTCGTTAACTAGTTGCTCTGT 59.995 43.478 18.56 0.00 0.00 3.41
694 736 3.365220 GCTCGTTAACTAGTTGCTCTGTG 59.635 47.826 18.56 5.81 0.00 3.66
695 737 4.795268 CTCGTTAACTAGTTGCTCTGTGA 58.205 43.478 18.56 5.57 0.00 3.58
696 738 5.386958 TCGTTAACTAGTTGCTCTGTGAT 57.613 39.130 18.56 0.00 0.00 3.06
697 739 6.505044 TCGTTAACTAGTTGCTCTGTGATA 57.495 37.500 18.56 0.00 0.00 2.15
698 740 6.916440 TCGTTAACTAGTTGCTCTGTGATAA 58.084 36.000 18.56 0.00 0.00 1.75
699 741 7.027760 TCGTTAACTAGTTGCTCTGTGATAAG 58.972 38.462 18.56 0.00 0.00 1.73
734 776 2.622064 AACTCCAATCGCATCCCTAC 57.378 50.000 0.00 0.00 0.00 3.18
749 791 1.303317 CTACTGGGCCTGGCGTTTT 60.303 57.895 13.40 0.00 0.00 2.43
757 799 1.338655 GGCCTGGCGTTTTGAAGTTTA 59.661 47.619 13.40 0.00 0.00 2.01
793 835 3.526899 TGTGGAAGGTGGGAATAGAAGA 58.473 45.455 0.00 0.00 0.00 2.87
794 836 3.913799 TGTGGAAGGTGGGAATAGAAGAA 59.086 43.478 0.00 0.00 0.00 2.52
795 837 4.019321 TGTGGAAGGTGGGAATAGAAGAAG 60.019 45.833 0.00 0.00 0.00 2.85
914 970 1.600916 ACAAACCTTGCTCGGCTCC 60.601 57.895 0.00 0.00 0.00 4.70
919 975 3.393970 CTTGCTCGGCTCCTCCCA 61.394 66.667 0.00 0.00 0.00 4.37
945 1001 0.302890 CAATCAGCCGAACATCTCGC 59.697 55.000 0.00 0.00 46.71 5.03
1470 1526 4.514577 CGCGCCGAGGTCAAGGAT 62.515 66.667 0.00 0.00 0.00 3.24
1845 1907 2.270205 CCCCAGAGACGCAGCAAT 59.730 61.111 0.00 0.00 0.00 3.56
1852 1914 3.491619 CCAGAGACGCAGCAATAGTGTAT 60.492 47.826 0.00 0.00 0.00 2.29
1912 1991 6.150140 CCCAAGAACTCAACCTTCTAATTCAG 59.850 42.308 0.00 0.00 0.00 3.02
1978 2057 3.365265 CCAAACCAGAGCGGCACC 61.365 66.667 1.45 0.00 39.03 5.01
1979 2058 2.594303 CAAACCAGAGCGGCACCA 60.594 61.111 1.45 0.00 39.03 4.17
2202 2281 1.202336 GCATGGCAAGGTACATTCTGC 60.202 52.381 0.00 0.00 0.00 4.26
2347 2503 4.970662 TGATAAAATGCTTGAGGTGAGC 57.029 40.909 0.00 0.00 40.53 4.26
2375 2531 4.397420 TGAAAGCTCAGGCAAACTTGATA 58.603 39.130 0.00 0.00 41.70 2.15
2384 2540 6.623486 TCAGGCAAACTTGATATGAATGTTG 58.377 36.000 0.00 0.00 0.00 3.33
2394 2550 8.025445 ACTTGATATGAATGTTGAAAGAACAGC 58.975 33.333 0.00 0.00 33.18 4.40
2397 2553 5.779529 ATGAATGTTGAAAGAACAGCAGT 57.220 34.783 0.00 0.00 34.83 4.40
2649 2805 1.084370 GGAAACAGTCCGCCATCTCG 61.084 60.000 0.00 0.00 36.40 4.04
2691 2847 0.254747 CCGACCTCTCACCTCTCTCT 59.745 60.000 0.00 0.00 0.00 3.10
2705 2861 3.255642 CCTCTCTCTAGCCATACAAGAGC 59.744 52.174 0.00 0.00 37.31 4.09
2725 2881 1.089920 CACCTCTGAATCCGCAAAGG 58.910 55.000 0.00 0.00 42.97 3.11
2810 2966 0.605589 AACAGCAAGTCCTCCTCGAG 59.394 55.000 5.13 5.13 0.00 4.04
2819 2975 4.511636 CTCCTCGAGGAAAGCTGC 57.488 61.111 32.94 0.00 44.91 5.25
2820 2976 1.153469 CTCCTCGAGGAAAGCTGCC 60.153 63.158 32.94 0.00 44.91 4.85
2821 2977 2.510238 CCTCGAGGAAAGCTGCCG 60.510 66.667 28.21 0.00 37.39 5.69
2822 2978 2.573869 CTCGAGGAAAGCTGCCGA 59.426 61.111 3.91 0.00 0.00 5.54
2823 2979 1.807573 CTCGAGGAAAGCTGCCGAC 60.808 63.158 3.91 0.00 0.00 4.79
2824 2980 3.181967 CGAGGAAAGCTGCCGACG 61.182 66.667 0.00 11.47 0.00 5.12
2825 2981 3.491652 GAGGAAAGCTGCCGACGC 61.492 66.667 0.00 0.00 0.00 5.19
2826 2982 3.941657 GAGGAAAGCTGCCGACGCT 62.942 63.158 0.00 0.00 39.94 5.07
2828 2984 2.476499 GAAAGCTGCCGACGCTTC 59.524 61.111 0.00 0.00 46.24 3.86
2829 2985 2.029844 GAAAGCTGCCGACGCTTCT 61.030 57.895 0.00 0.00 46.24 2.85
2830 2986 1.569479 GAAAGCTGCCGACGCTTCTT 61.569 55.000 0.00 0.00 46.24 2.52
2831 2987 1.166531 AAAGCTGCCGACGCTTCTTT 61.167 50.000 0.00 3.23 46.24 2.52
2832 2988 1.569479 AAGCTGCCGACGCTTCTTTC 61.569 55.000 0.00 0.00 43.79 2.62
2833 2989 3.028366 GCTGCCGACGCTTCTTTCC 62.028 63.158 0.00 0.00 35.36 3.13
2834 2990 1.667830 CTGCCGACGCTTCTTTCCA 60.668 57.895 0.00 0.00 35.36 3.53
2835 2991 1.227704 TGCCGACGCTTCTTTCCAA 60.228 52.632 0.00 0.00 35.36 3.53
2836 2992 1.227999 TGCCGACGCTTCTTTCCAAG 61.228 55.000 0.00 0.00 35.36 3.61
3036 3210 3.049674 AACCATGTCGTGCGGCAG 61.050 61.111 1.18 0.00 31.29 4.85
3040 3214 3.381983 ATGTCGTGCGGCAGGAGA 61.382 61.111 24.06 23.00 31.29 3.71
3096 3270 2.280254 TGCGCGTTTTCCGAGGAA 60.280 55.556 8.43 0.00 39.56 3.36
3135 3309 2.112190 GAGAGGGTTCGGAGGAAGATT 58.888 52.381 0.00 0.00 31.49 2.40
3197 3371 4.083003 AGCGCTAGAGAGTATGAATAGTGC 60.083 45.833 8.99 7.74 45.69 4.40
3244 3418 6.862469 TGTTAGTGGCAGTAACTAGGTAAT 57.138 37.500 33.42 0.00 35.55 1.89
3256 3430 9.616156 CAGTAACTAGGTAATCTCTAGACAGAA 57.384 37.037 5.29 0.00 38.02 3.02
3269 3443 7.726216 TCTCTAGACAGAAACAGAATGAACAA 58.274 34.615 0.00 0.00 39.69 2.83
3277 3452 8.469200 ACAGAAACAGAATGAACAATTTCAGAA 58.531 29.630 0.00 0.00 45.07 3.02
3446 3624 5.613964 ACGAAGTTTGTGCAAATTTAACG 57.386 34.783 5.59 8.25 37.78 3.18
3761 3981 9.308318 GCCAAGAAAAGTATGAAGTAAAACAAA 57.692 29.630 0.00 0.00 0.00 2.83
3989 4209 7.381948 TCAACAACTGCACATAAATGTTTGATC 59.618 33.333 10.63 0.00 39.39 2.92
4027 4247 8.806634 CATTTGGTTATGACAAATATTTGGTCG 58.193 33.333 27.43 7.32 44.29 4.79
4135 4356 4.681074 TGTACTGATGTCAACCTGTCAA 57.319 40.909 0.00 0.00 0.00 3.18
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
155 163 1.442184 GCTTTCGCGAGAGTCACGA 60.442 57.895 25.34 6.50 43.69 4.35
187 195 1.444212 CATGGTTTTGCTTCCGCGG 60.444 57.895 22.12 22.12 39.65 6.46
265 282 2.259618 GTATGCTTTCGCGAGAGTCAA 58.740 47.619 25.34 13.46 43.69 3.18
392 415 0.456142 TCCGCGAGAGACACGATTTG 60.456 55.000 8.23 0.00 0.00 2.32
422 445 3.978687 TCTTTTTCTTTCGCGAGAGTCT 58.021 40.909 24.05 0.00 43.69 3.24
489 519 3.889196 TTGGTTTTTCATCGGTCTTCG 57.111 42.857 0.00 0.00 40.90 3.79
535 567 5.317559 CACGTGTTTTTGGCTTTTTAAACC 58.682 37.500 7.58 0.00 31.25 3.27
572 611 5.534407 GCTTCCTTCGGATTTTGGTTTTTA 58.466 37.500 0.00 0.00 0.00 1.52
575 617 2.030274 CGCTTCCTTCGGATTTTGGTTT 60.030 45.455 0.00 0.00 0.00 3.27
576 618 1.539827 CGCTTCCTTCGGATTTTGGTT 59.460 47.619 0.00 0.00 0.00 3.67
577 619 1.165270 CGCTTCCTTCGGATTTTGGT 58.835 50.000 0.00 0.00 0.00 3.67
578 620 0.179163 GCGCTTCCTTCGGATTTTGG 60.179 55.000 0.00 0.00 0.00 3.28
623 665 1.630148 GTCACTTGACGCGCTCTTAT 58.370 50.000 5.73 0.00 35.12 1.73
625 667 3.938112 GTCACTTGACGCGCTCTT 58.062 55.556 5.73 0.00 35.12 2.85
646 688 4.338118 TCCTTCAAAAGACTCGCAACAATT 59.662 37.500 0.00 0.00 0.00 2.32
649 691 2.872245 CTCCTTCAAAAGACTCGCAACA 59.128 45.455 0.00 0.00 0.00 3.33
658 700 2.910688 ACGAGCACTCCTTCAAAAGA 57.089 45.000 0.00 0.00 0.00 2.52
663 705 3.825014 ACTAGTTAACGAGCACTCCTTCA 59.175 43.478 14.82 0.00 0.00 3.02
671 713 3.005472 ACAGAGCAACTAGTTAACGAGCA 59.995 43.478 14.82 0.00 0.00 4.26
734 776 2.146073 CTTCAAAACGCCAGGCCCAG 62.146 60.000 5.63 0.00 0.00 4.45
757 799 4.521146 CTTCCACAAGATGAAGCCTACAT 58.479 43.478 0.00 0.00 32.37 2.29
793 835 4.683643 AGTATTGTTAACATTGGGCCCTT 58.316 39.130 25.70 11.67 0.00 3.95
794 836 4.017499 AGAGTATTGTTAACATTGGGCCCT 60.017 41.667 25.70 4.09 0.00 5.19
795 837 4.278310 AGAGTATTGTTAACATTGGGCCC 58.722 43.478 17.59 17.59 0.00 5.80
914 970 1.396653 GCTGATTGATGGGTTGGGAG 58.603 55.000 0.00 0.00 0.00 4.30
919 975 1.271871 TGTTCGGCTGATTGATGGGTT 60.272 47.619 0.00 0.00 0.00 4.11
945 1001 4.214327 GGAGAGAGGAAGCCGGCG 62.214 72.222 23.20 0.00 0.00 6.46
1284 1340 2.892640 CCGTTGGCGAGGATGAGA 59.107 61.111 0.00 0.00 41.33 3.27
1470 1526 1.752683 GCTCAGAGACGACCTCCTTA 58.247 55.000 0.00 0.00 42.97 2.69
1705 1761 3.558411 GATGGACGCAGCGCTGAC 61.558 66.667 40.21 27.92 0.00 3.51
1832 1894 4.557695 GCTATACACTATTGCTGCGTCTCT 60.558 45.833 0.00 0.00 34.73 3.10
1852 1914 6.374333 GGTCACACAAATTAGAGAAATGGCTA 59.626 38.462 0.00 0.00 0.00 3.93
1912 1991 7.617557 ACAGCGTACAAAAATGAAAAATTGAC 58.382 30.769 0.00 0.00 0.00 3.18
1978 2057 0.321671 ACTCCAGTGGGTCATTCGTG 59.678 55.000 9.92 0.00 34.93 4.35
1979 2058 0.608640 GACTCCAGTGGGTCATTCGT 59.391 55.000 19.96 4.23 34.93 3.85
2202 2281 6.030548 TCAGATAACAGGAACAGAAGACAG 57.969 41.667 0.00 0.00 0.00 3.51
2347 2503 4.812626 AGTTTGCCTGAGCTTTCATTTTTG 59.187 37.500 0.00 0.00 40.80 2.44
2352 2508 3.225104 TCAAGTTTGCCTGAGCTTTCAT 58.775 40.909 0.00 0.00 40.80 2.57
2353 2509 2.653726 TCAAGTTTGCCTGAGCTTTCA 58.346 42.857 0.00 0.00 40.80 2.69
2363 2519 7.814107 TCTTTCAACATTCATATCAAGTTTGCC 59.186 33.333 0.00 0.00 0.00 4.52
2364 2520 8.746922 TCTTTCAACATTCATATCAAGTTTGC 57.253 30.769 0.00 0.00 0.00 3.68
2375 2531 5.300034 TGACTGCTGTTCTTTCAACATTCAT 59.700 36.000 0.00 0.00 0.00 2.57
2384 2540 4.882671 TGAGTTTGACTGCTGTTCTTTC 57.117 40.909 0.00 0.00 0.00 2.62
2649 2805 1.001641 AATGGCTGCTCTGACCCAC 60.002 57.895 0.00 0.00 0.00 4.61
2691 2847 1.762957 GAGGTGGCTCTTGTATGGCTA 59.237 52.381 0.00 0.00 0.00 3.93
2705 2861 1.089920 CTTTGCGGATTCAGAGGTGG 58.910 55.000 0.00 0.00 0.00 4.61
2725 2881 1.701545 TTTGATTCGGACGGCGATGC 61.702 55.000 16.62 1.92 0.00 3.91
2736 2892 0.804989 GGGTGACAGGCTTTGATTCG 59.195 55.000 0.00 0.00 0.00 3.34
2815 2971 2.476499 GAAAGAAGCGTCGGCAGC 59.524 61.111 0.00 0.00 43.41 5.25
2816 2972 1.227999 TTGGAAAGAAGCGTCGGCAG 61.228 55.000 0.00 0.00 43.41 4.85
2817 2973 1.227704 TTGGAAAGAAGCGTCGGCA 60.228 52.632 0.00 0.00 43.41 5.69
2818 2974 3.650369 TTGGAAAGAAGCGTCGGC 58.350 55.556 0.00 0.00 40.37 5.54
2828 2984 0.886563 CAGCTTGCTCCCTTGGAAAG 59.113 55.000 0.00 0.00 45.69 2.62
2829 2985 0.478072 TCAGCTTGCTCCCTTGGAAA 59.522 50.000 0.00 0.00 0.00 3.13
2830 2986 0.037303 CTCAGCTTGCTCCCTTGGAA 59.963 55.000 0.00 0.00 0.00 3.53
2831 2987 1.130054 ACTCAGCTTGCTCCCTTGGA 61.130 55.000 0.00 0.00 0.00 3.53
2832 2988 0.959372 CACTCAGCTTGCTCCCTTGG 60.959 60.000 0.00 0.00 0.00 3.61
2833 2989 1.584380 GCACTCAGCTTGCTCCCTTG 61.584 60.000 1.51 0.00 41.15 3.61
2834 2990 1.303155 GCACTCAGCTTGCTCCCTT 60.303 57.895 1.51 0.00 41.15 3.95
2835 2991 2.350514 GCACTCAGCTTGCTCCCT 59.649 61.111 1.51 0.00 41.15 4.20
2836 2992 2.749441 GGCACTCAGCTTGCTCCC 60.749 66.667 8.68 0.00 44.79 4.30
2974 3148 4.845580 CTGCAGAAGCCCCGCGAT 62.846 66.667 8.42 0.00 41.13 4.58
3036 3210 2.812619 CCCCGGAAGCATCCTCTCC 61.813 68.421 0.73 0.00 44.17 3.71
3083 3257 1.544691 TCTCCTCTTCCTCGGAAAACG 59.455 52.381 0.00 0.00 46.11 3.60
3096 3270 1.153745 GCACGCATCGTTCTCCTCT 60.154 57.895 0.00 0.00 38.32 3.69
3135 3309 2.428925 CCTTAGGAGCGCCCCGTAA 61.429 63.158 2.29 8.02 34.66 3.18
3197 3371 8.091449 ACAACTAATTCTCCTCTTCAGTTACTG 58.909 37.037 5.94 5.94 0.00 2.74
3244 3418 7.290110 TGTTCATTCTGTTTCTGTCTAGAGA 57.710 36.000 0.00 0.00 33.70 3.10
3269 3443 9.739276 TGATCCACTTACATTAACTTCTGAAAT 57.261 29.630 0.00 0.00 0.00 2.17
3277 3452 6.757010 GTGACGATGATCCACTTACATTAACT 59.243 38.462 0.00 0.00 0.00 2.24
3373 3551 2.344592 ACCATAACCTCCAGAACACCA 58.655 47.619 0.00 0.00 0.00 4.17
3511 3691 0.492730 TACCAGGGTCCCAGTTACCA 59.507 55.000 11.55 0.00 38.87 3.25
3553 3741 4.431416 TGACTTCATAACAACACTGGGT 57.569 40.909 0.00 0.00 0.00 4.51
4027 4247 6.206634 TCAACATCTACATTTCCTTGTCAACC 59.793 38.462 0.00 0.00 0.00 3.77
4135 4356 5.430089 AGGTCTAACTTGGATTAATCTGGCT 59.570 40.000 14.95 0.22 0.00 4.75


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.