Multiple sequence alignment - TraesCS2A01G194000

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS2A01G194000 chr2A 100.000 6570 0 0 1 6570 162275443 162268874 0.000000e+00 12133.0
1 TraesCS2A01G194000 chr2A 99.231 130 1 0 230 359 162275079 162274950 1.100000e-57 235.0
2 TraesCS2A01G194000 chr2D 94.432 4041 101 32 365 4333 138802580 138806568 0.000000e+00 6102.0
3 TraesCS2A01G194000 chr2D 92.099 1215 68 7 4763 5970 138806987 138808180 0.000000e+00 1687.0
4 TraesCS2A01G194000 chr2D 92.007 588 26 8 5987 6570 138808306 138808876 0.000000e+00 806.0
5 TraesCS2A01G194000 chr2D 97.578 289 6 1 4476 4764 138806576 138806863 1.650000e-135 494.0
6 TraesCS2A01G194000 chr2D 90.313 351 29 3 11 360 138802364 138802710 7.770000e-124 455.0
7 TraesCS2A01G194000 chr2B 93.460 3425 133 28 365 3728 197233096 197236490 0.000000e+00 5000.0
8 TraesCS2A01G194000 chr2B 92.908 2115 83 24 4476 6570 197237148 197239215 0.000000e+00 3013.0
9 TraesCS2A01G194000 chr2B 94.970 497 24 1 3750 4246 197236467 197236962 0.000000e+00 778.0
10 TraesCS2A01G194000 chr2B 92.000 125 7 3 1 123 197226390 197226513 8.760000e-39 172.0
11 TraesCS2A01G194000 chr2B 96.552 87 3 0 4247 4333 197237054 197237140 1.910000e-30 145.0
12 TraesCS2A01G194000 chr3D 91.324 219 17 2 376 593 478071023 478070806 1.380000e-76 298.0
13 TraesCS2A01G194000 chr3D 92.562 121 8 1 241 360 478071023 478070903 8.760000e-39 172.0
14 TraesCS2A01G194000 chrUn 90.868 219 18 2 376 593 45079936 45079719 6.440000e-75 292.0
15 TraesCS2A01G194000 chrUn 90.868 219 18 2 376 593 182436427 182436644 6.440000e-75 292.0
16 TraesCS2A01G194000 chrUn 90.868 219 18 2 376 593 301689953 301689736 6.440000e-75 292.0
17 TraesCS2A01G194000 chrUn 90.868 219 18 2 376 593 348814812 348814595 6.440000e-75 292.0
18 TraesCS2A01G194000 chrUn 90.868 219 18 2 376 593 380937981 380937764 6.440000e-75 292.0
19 TraesCS2A01G194000 chrUn 90.868 219 18 2 376 593 382280619 382280836 6.440000e-75 292.0
20 TraesCS2A01G194000 chrUn 91.736 121 9 1 241 360 45079936 45079816 4.070000e-37 167.0
21 TraesCS2A01G194000 chrUn 91.736 121 9 1 241 360 182436427 182436547 4.070000e-37 167.0
22 TraesCS2A01G194000 chrUn 91.736 121 9 1 241 360 301689953 301689833 4.070000e-37 167.0
23 TraesCS2A01G194000 chrUn 91.736 121 9 1 241 360 348814812 348814692 4.070000e-37 167.0
24 TraesCS2A01G194000 chrUn 91.736 121 9 1 241 360 380937981 380937861 4.070000e-37 167.0
25 TraesCS2A01G194000 chrUn 91.736 121 9 1 241 360 382280619 382280739 4.070000e-37 167.0
26 TraesCS2A01G194000 chr5A 98.621 145 2 0 4332 4476 527915779 527915923 2.350000e-64 257.0
27 TraesCS2A01G194000 chr5A 89.815 108 9 2 588 694 41306374 41306480 3.200000e-28 137.0
28 TraesCS2A01G194000 chr4A 96.129 155 6 0 4332 4486 596221186 596221340 3.040000e-63 254.0
29 TraesCS2A01G194000 chr7A 94.479 163 5 3 4332 4491 135707841 135708002 1.410000e-61 248.0
30 TraesCS2A01G194000 chr7A 94.410 161 7 2 4332 4491 572573341 572573182 5.090000e-61 246.0
31 TraesCS2A01G194000 chr7A 93.878 49 2 1 583 631 611339470 611339517 9.140000e-09 73.1
32 TraesCS2A01G194000 chr4D 95.513 156 5 2 4332 4485 195030508 195030663 1.410000e-61 248.0
33 TraesCS2A01G194000 chr7B 93.452 168 8 3 4332 4499 107601904 107601740 5.090000e-61 246.0
34 TraesCS2A01G194000 chr4B 94.937 158 7 1 4333 4490 494225908 494225752 5.090000e-61 246.0
35 TraesCS2A01G194000 chr1B 97.241 145 4 0 4332 4476 49198854 49198998 5.090000e-61 246.0
36 TraesCS2A01G194000 chr1B 94.937 158 6 2 4332 4489 451910600 451910445 5.090000e-61 246.0
37 TraesCS2A01G194000 chr5D 93.396 106 6 1 589 694 6162106 6162210 8.820000e-34 156.0
38 TraesCS2A01G194000 chr1D 86.957 138 15 3 11 147 392758926 392758791 1.140000e-32 152.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS2A01G194000 chr2A 162268874 162275443 6569 True 6184.0 12133 99.6155 1 6570 2 chr2A.!!$R1 6569
1 TraesCS2A01G194000 chr2D 138802364 138808876 6512 False 1908.8 6102 93.2858 11 6570 5 chr2D.!!$F1 6559
2 TraesCS2A01G194000 chr2B 197233096 197239215 6119 False 2234.0 5000 94.4725 365 6570 4 chr2B.!!$F2 6205

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
369 371 0.105709 TGTGAGGATCCCGCCTATCA 60.106 55.000 8.55 0.99 38.73 2.15 F
441 444 0.107017 AATGCATGTCCCGCTAAGCT 60.107 50.000 0.00 0.00 0.00 3.74 F
472 475 1.272490 TGTGCTCGACTTGGAAGTAGG 59.728 52.381 0.00 0.00 39.88 3.18 F
935 963 1.296727 GCATCCTACCTACCGCAAAC 58.703 55.000 0.00 0.00 0.00 2.93 F
1518 1555 1.591183 GGGGACGCGGTACAGTTTA 59.409 57.895 12.47 0.00 0.00 2.01 F
2722 2810 2.158385 CCCTACCAGACAGCCTAGAGAT 60.158 54.545 0.00 0.00 0.00 2.75 F
4350 4541 0.394565 CTAGCTATGGACAGGGGTGC 59.605 60.000 0.00 0.00 35.66 5.01 F
4379 4570 0.179037 TGCTATCCATGTGCCAGAGC 60.179 55.000 0.00 0.00 40.48 4.09 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1851 1936 0.031178 AGCAAAAGCGAACAGGCAAG 59.969 50.000 0.00 0.0 34.64 4.01 R
2099 2185 2.907634 TGTTGCACGGTAACAGAAGAA 58.092 42.857 4.05 0.0 33.43 2.52 R
2458 2545 4.625972 AAGGACAAACGTGGTAAACTTG 57.374 40.909 0.00 0.0 0.00 3.16 R
2958 3046 7.012044 GGTGTGTGTCCCAATAAGTGTATATTC 59.988 40.741 0.00 0.0 0.00 1.75 R
3140 3228 5.952526 ACGTCTTACCAGTTTTATTTGGG 57.047 39.130 0.00 0.0 38.82 4.12 R
4360 4551 0.179037 GCTCTGGCACATGGATAGCA 60.179 55.000 0.00 0.0 38.20 3.49 R
5292 5613 0.107312 CTGGGGGACTGCAATCAGAG 60.107 60.000 0.00 0.0 42.95 3.35 R
5745 6079 0.173935 TTGGACCGCCACTATACGTG 59.826 55.000 0.00 0.0 45.94 4.49 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
29 30 2.106332 GCCTCCATACCGACACCG 59.894 66.667 0.00 0.00 0.00 4.94
33 34 0.383231 CTCCATACCGACACCGTACC 59.617 60.000 0.00 0.00 0.00 3.34
41 42 1.000731 CCGACACCGTACCCTTTGTAA 59.999 52.381 0.00 0.00 0.00 2.41
43 44 2.476241 CGACACCGTACCCTTTGTAAAC 59.524 50.000 0.00 0.00 0.00 2.01
79 80 6.838382 TCTGTAACCTTAGCTTTTCTCCTTT 58.162 36.000 0.00 0.00 0.00 3.11
81 82 7.778382 TCTGTAACCTTAGCTTTTCTCCTTTTT 59.222 33.333 0.00 0.00 0.00 1.94
89 90 4.640647 AGCTTTTCTCCTTTTTCGAACTGT 59.359 37.500 0.00 0.00 0.00 3.55
203 204 3.173151 CCTAATGGGCTTTTGTCCCTTT 58.827 45.455 0.00 2.47 45.51 3.11
211 212 3.381590 GGCTTTTGTCCCTTTGCCTATAG 59.618 47.826 0.00 0.00 37.58 1.31
222 223 2.048127 CCTATAGGCGGCGGCTTC 60.048 66.667 40.27 7.61 39.70 3.86
234 235 1.521457 CGGCTTCGCTTGGCTATCA 60.521 57.895 0.00 0.00 0.00 2.15
237 238 0.933796 GCTTCGCTTGGCTATCACTC 59.066 55.000 0.00 0.00 0.00 3.51
251 252 6.770785 TGGCTATCACTCAAGTGTTTTAAGTT 59.229 34.615 9.82 0.00 45.76 2.66
296 298 3.025978 TCCTGGGAATGAAATGCATGTC 58.974 45.455 10.16 10.16 37.28 3.06
298 300 2.101917 CTGGGAATGAAATGCATGTCCC 59.898 50.000 14.44 17.12 45.18 4.46
306 308 0.107017 AATGCATGTCCCGCTAAGCT 60.107 50.000 0.00 0.00 0.00 3.74
323 325 6.197981 GCTAAGCTCAAAATCTAATGTGCTC 58.802 40.000 3.23 0.00 43.36 4.26
339 341 1.271379 TGCTCAACTTGGAAGTAGGCC 60.271 52.381 0.00 0.00 38.57 5.19
340 342 1.271379 GCTCAACTTGGAAGTAGGCCA 60.271 52.381 5.01 0.00 38.57 5.36
341 343 2.427506 CTCAACTTGGAAGTAGGCCAC 58.572 52.381 5.01 0.54 38.57 5.01
342 344 2.039084 CTCAACTTGGAAGTAGGCCACT 59.961 50.000 5.01 3.39 38.57 4.00
343 345 2.038557 TCAACTTGGAAGTAGGCCACTC 59.961 50.000 5.01 0.00 38.57 3.51
344 346 2.031495 ACTTGGAAGTAGGCCACTCT 57.969 50.000 5.01 0.00 37.52 3.24
345 347 2.339769 ACTTGGAAGTAGGCCACTCTT 58.660 47.619 5.01 6.12 37.52 2.85
346 348 2.711547 ACTTGGAAGTAGGCCACTCTTT 59.288 45.455 5.01 0.00 37.52 2.52
347 349 3.244596 ACTTGGAAGTAGGCCACTCTTTC 60.245 47.826 5.01 5.72 37.52 2.62
348 350 2.334977 TGGAAGTAGGCCACTCTTTCA 58.665 47.619 5.01 8.48 36.04 2.69
349 351 2.912956 TGGAAGTAGGCCACTCTTTCAT 59.087 45.455 5.01 0.00 36.04 2.57
350 352 3.330701 TGGAAGTAGGCCACTCTTTCATT 59.669 43.478 5.01 0.00 36.04 2.57
351 353 3.691609 GGAAGTAGGCCACTCTTTCATTG 59.308 47.826 5.01 0.00 36.04 2.82
352 354 4.327680 GAAGTAGGCCACTCTTTCATTGT 58.672 43.478 5.01 0.00 36.04 2.71
353 355 3.679389 AGTAGGCCACTCTTTCATTGTG 58.321 45.455 5.01 0.00 28.33 3.33
354 356 2.957402 AGGCCACTCTTTCATTGTGA 57.043 45.000 5.01 0.00 33.95 3.58
355 357 2.787994 AGGCCACTCTTTCATTGTGAG 58.212 47.619 5.01 0.00 33.95 3.51
356 358 1.815003 GGCCACTCTTTCATTGTGAGG 59.185 52.381 0.00 0.00 33.95 3.86
357 359 2.553028 GGCCACTCTTTCATTGTGAGGA 60.553 50.000 0.00 0.00 33.95 3.71
358 360 3.350833 GCCACTCTTTCATTGTGAGGAT 58.649 45.455 0.00 0.00 33.95 3.24
359 361 3.376546 GCCACTCTTTCATTGTGAGGATC 59.623 47.826 0.00 0.00 33.95 3.36
360 362 3.944015 CCACTCTTTCATTGTGAGGATCC 59.056 47.826 2.48 2.48 33.95 3.36
361 363 3.944015 CACTCTTTCATTGTGAGGATCCC 59.056 47.826 8.55 0.11 33.95 3.85
362 364 3.201290 CTCTTTCATTGTGAGGATCCCG 58.799 50.000 8.55 0.00 0.00 5.14
363 365 1.672881 CTTTCATTGTGAGGATCCCGC 59.327 52.381 8.55 7.47 0.00 6.13
369 371 0.105709 TGTGAGGATCCCGCCTATCA 60.106 55.000 8.55 0.99 38.73 2.15
408 411 5.618056 TTTGAGCAGTCAAATGAGCTAAG 57.382 39.130 0.00 0.00 45.82 2.18
433 436 2.101917 CTGGGAATGAAATGCATGTCCC 59.898 50.000 14.44 17.12 45.18 4.46
441 444 0.107017 AATGCATGTCCCGCTAAGCT 60.107 50.000 0.00 0.00 0.00 3.74
458 461 6.197981 GCTAAGCTCAAAATCTAATGTGCTC 58.802 40.000 3.23 0.00 43.36 4.26
461 464 4.331168 AGCTCAAAATCTAATGTGCTCGAC 59.669 41.667 0.00 0.00 41.12 4.20
472 475 1.272490 TGTGCTCGACTTGGAAGTAGG 59.728 52.381 0.00 0.00 39.88 3.18
484 487 2.912956 TGGAAGTAGGCCACTCTTTCAT 59.087 45.455 5.01 0.00 36.04 2.57
513 517 6.181190 AGGATTTTCTTTTAGTCTGTAGCCC 58.819 40.000 0.00 0.00 0.00 5.19
554 558 6.490492 TGACATGATCCGGGTATTCTATCTA 58.510 40.000 0.00 0.00 0.00 1.98
626 630 9.681062 TTAGAAGGATCCGTTATCTGAAAATTT 57.319 29.630 17.38 0.00 34.75 1.82
684 688 6.829849 TGCATACCATATCTCAACAGATTGA 58.170 36.000 0.00 0.00 42.73 2.57
696 700 6.148811 TCTCAACAGATTGACGTAATTTTCCC 59.851 38.462 0.00 0.00 40.01 3.97
720 748 4.380531 TGAATTCACCAGATAAGCCGATC 58.619 43.478 3.38 0.00 0.00 3.69
721 749 4.101585 TGAATTCACCAGATAAGCCGATCT 59.898 41.667 3.38 0.00 36.58 2.75
935 963 1.296727 GCATCCTACCTACCGCAAAC 58.703 55.000 0.00 0.00 0.00 2.93
957 985 3.717294 AGCACCCAAGGCTACCCG 61.717 66.667 0.00 0.00 40.47 5.28
990 1018 2.612251 CCTCCTCCTCCTCCTCCC 59.388 72.222 0.00 0.00 0.00 4.30
1100 1128 3.827898 GAGGGACGGCGTCTCCAG 61.828 72.222 34.30 0.00 32.66 3.86
1159 1187 3.375699 TCCTCATGGGAGAAGGTTAGTC 58.624 50.000 0.00 0.00 44.26 2.59
1191 1219 2.579738 GCCTCCCACTTCTCCGAC 59.420 66.667 0.00 0.00 0.00 4.79
1490 1527 5.822519 TGGTATTTTGCTTAGCGATTCTGAT 59.177 36.000 0.00 0.00 0.00 2.90
1499 1536 5.559799 GCTTAGCGATTCTGATTGAATGGTC 60.560 44.000 0.00 0.00 44.70 4.02
1518 1555 1.591183 GGGGACGCGGTACAGTTTA 59.409 57.895 12.47 0.00 0.00 2.01
1561 1621 6.724694 TTGCATTTCTGATGTTAAAATGGC 57.275 33.333 8.59 0.00 39.59 4.40
1649 1709 6.348458 GGCAATAGCATATTTATTCAGCACGA 60.348 38.462 0.00 0.00 44.61 4.35
1851 1936 6.171213 ACCACAGGTACTTGCTTAATTACTC 58.829 40.000 4.65 0.00 34.60 2.59
1976 2062 9.379791 AGAGATGGGTTAATTAAGTTAAGAACG 57.620 33.333 13.19 0.00 33.11 3.95
2025 2111 3.397482 AGTTCAATGGATCGCTATGCTC 58.603 45.455 0.00 0.00 0.00 4.26
2053 2139 6.092670 CGAGTTCATGCTTTATTTCTTCCTGA 59.907 38.462 0.00 0.00 0.00 3.86
2251 2337 4.122046 TCTGTATTGTTCATCTGCCATCG 58.878 43.478 0.00 0.00 0.00 3.84
2349 2435 5.869540 AATCTAGGAGGATAGCTACCTGA 57.130 43.478 16.60 9.80 37.93 3.86
2397 2483 5.397142 TGCGATGCTGATGAAGACTATAT 57.603 39.130 0.00 0.00 0.00 0.86
2423 2510 6.245408 AGACAGTGGTGAAATATGGCTTAAA 58.755 36.000 0.00 0.00 0.00 1.52
2458 2545 4.393680 TGTAATGTGGGCAGTTATCGTTTC 59.606 41.667 0.00 0.00 0.00 2.78
2682 2769 8.571461 TTACTAGATGAGAGTCTTAACCGAAA 57.429 34.615 0.00 0.00 0.00 3.46
2722 2810 2.158385 CCCTACCAGACAGCCTAGAGAT 60.158 54.545 0.00 0.00 0.00 2.75
2958 3046 4.767255 GAGGTGCGACTGGGCCAG 62.767 72.222 31.62 31.62 37.52 4.85
3140 3228 1.931172 ACACGCTGTGTTGAGTGTTAC 59.069 47.619 8.25 0.00 45.08 2.50
3229 3317 6.694411 GCTAAATAACACTGGCATGAATTGAG 59.306 38.462 0.00 0.19 0.00 3.02
3350 3450 1.599542 GGCGCCATGAGAACTGTTATC 59.400 52.381 24.80 8.17 0.00 1.75
3351 3451 2.555199 GCGCCATGAGAACTGTTATCT 58.445 47.619 15.33 0.00 0.00 1.98
3352 3452 2.939103 GCGCCATGAGAACTGTTATCTT 59.061 45.455 15.33 7.16 0.00 2.40
3353 3453 3.242543 GCGCCATGAGAACTGTTATCTTG 60.243 47.826 18.64 18.64 0.00 3.02
3354 3454 3.935203 CGCCATGAGAACTGTTATCTTGT 59.065 43.478 21.77 6.45 0.00 3.16
3355 3455 5.109210 CGCCATGAGAACTGTTATCTTGTA 58.891 41.667 21.77 3.62 0.00 2.41
3356 3456 5.005779 CGCCATGAGAACTGTTATCTTGTAC 59.994 44.000 21.77 15.36 0.00 2.90
3357 3457 6.109359 GCCATGAGAACTGTTATCTTGTACT 58.891 40.000 21.77 2.91 0.00 2.73
3358 3458 6.036517 GCCATGAGAACTGTTATCTTGTACTG 59.963 42.308 21.77 12.30 0.00 2.74
3359 3459 7.099764 CCATGAGAACTGTTATCTTGTACTGT 58.900 38.462 21.77 0.00 0.00 3.55
3360 3460 7.604164 CCATGAGAACTGTTATCTTGTACTGTT 59.396 37.037 21.77 0.00 38.56 3.16
3361 3461 8.993121 CATGAGAACTGTTATCTTGTACTGTTT 58.007 33.333 17.79 0.00 36.82 2.83
3856 3956 9.646427 CAGTAGAGCTTAGAAAACAAGTCTATT 57.354 33.333 0.00 0.00 0.00 1.73
3933 4033 4.004196 ACTATAATGCTAACGCCTTCCC 57.996 45.455 0.00 0.00 34.43 3.97
4344 4535 9.553064 AATCAATACTTTTCTAGCTATGGACAG 57.447 33.333 0.00 0.00 0.00 3.51
4345 4536 7.500992 TCAATACTTTTCTAGCTATGGACAGG 58.499 38.462 0.00 0.00 0.00 4.00
4346 4537 4.762289 ACTTTTCTAGCTATGGACAGGG 57.238 45.455 0.00 0.00 0.00 4.45
4347 4538 3.456277 ACTTTTCTAGCTATGGACAGGGG 59.544 47.826 0.00 0.00 0.00 4.79
4348 4539 2.868964 TTCTAGCTATGGACAGGGGT 57.131 50.000 0.00 0.00 0.00 4.95
4349 4540 2.088104 TCTAGCTATGGACAGGGGTG 57.912 55.000 0.00 0.00 0.00 4.61
4350 4541 0.394565 CTAGCTATGGACAGGGGTGC 59.605 60.000 0.00 0.00 35.66 5.01
4355 4546 2.531428 TGGACAGGGGTGCATGGA 60.531 61.111 0.00 0.00 40.73 3.41
4356 4547 2.159490 TGGACAGGGGTGCATGGAA 61.159 57.895 0.00 0.00 40.73 3.53
4357 4548 1.379044 GGACAGGGGTGCATGGAAG 60.379 63.158 0.00 0.00 35.12 3.46
4358 4549 2.036256 ACAGGGGTGCATGGAAGC 59.964 61.111 0.00 0.00 0.00 3.86
4359 4550 2.357836 CAGGGGTGCATGGAAGCT 59.642 61.111 0.00 0.00 34.99 3.74
4360 4551 1.304713 CAGGGGTGCATGGAAGCTT 60.305 57.895 0.00 0.00 34.99 3.74
4361 4552 1.304713 AGGGGTGCATGGAAGCTTG 60.305 57.895 2.10 0.00 34.99 4.01
4362 4553 2.575461 GGGTGCATGGAAGCTTGC 59.425 61.111 11.58 11.58 39.33 4.01
4363 4554 1.980772 GGGTGCATGGAAGCTTGCT 60.981 57.895 19.34 1.86 39.60 3.91
4364 4555 0.680921 GGGTGCATGGAAGCTTGCTA 60.681 55.000 19.34 6.07 39.60 3.49
4365 4556 1.396653 GGTGCATGGAAGCTTGCTAT 58.603 50.000 19.34 8.14 39.60 2.97
4366 4557 1.336125 GGTGCATGGAAGCTTGCTATC 59.664 52.381 19.34 8.04 39.60 2.08
4367 4558 1.336125 GTGCATGGAAGCTTGCTATCC 59.664 52.381 19.34 6.99 39.60 2.59
4368 4559 1.064537 TGCATGGAAGCTTGCTATCCA 60.065 47.619 19.34 20.23 46.60 3.41
4372 4563 2.646930 TGGAAGCTTGCTATCCATGTG 58.353 47.619 19.34 0.00 38.30 3.21
4373 4564 1.336125 GGAAGCTTGCTATCCATGTGC 59.664 52.381 11.19 0.00 33.30 4.57
4374 4565 1.336125 GAAGCTTGCTATCCATGTGCC 59.664 52.381 2.10 0.00 0.00 5.01
4375 4566 0.256752 AGCTTGCTATCCATGTGCCA 59.743 50.000 0.00 0.00 0.00 4.92
4376 4567 0.666913 GCTTGCTATCCATGTGCCAG 59.333 55.000 0.00 0.00 0.00 4.85
4377 4568 1.748244 GCTTGCTATCCATGTGCCAGA 60.748 52.381 0.00 0.00 0.00 3.86
4378 4569 2.219458 CTTGCTATCCATGTGCCAGAG 58.781 52.381 0.00 0.00 0.00 3.35
4379 4570 0.179037 TGCTATCCATGTGCCAGAGC 60.179 55.000 0.00 0.00 40.48 4.09
4380 4571 0.888285 GCTATCCATGTGCCAGAGCC 60.888 60.000 0.00 0.00 38.69 4.70
4381 4572 0.471191 CTATCCATGTGCCAGAGCCA 59.529 55.000 0.00 0.00 38.69 4.75
4382 4573 1.073444 CTATCCATGTGCCAGAGCCAT 59.927 52.381 0.00 0.00 38.69 4.40
4383 4574 0.467474 ATCCATGTGCCAGAGCCATG 60.467 55.000 8.59 8.59 42.54 3.66
4384 4575 1.077285 CCATGTGCCAGAGCCATGA 60.077 57.895 14.22 0.00 44.14 3.07
4385 4576 1.101635 CCATGTGCCAGAGCCATGAG 61.102 60.000 14.22 5.17 44.14 2.90
4386 4577 0.393944 CATGTGCCAGAGCCATGAGT 60.394 55.000 0.00 0.00 44.14 3.41
4387 4578 0.330604 ATGTGCCAGAGCCATGAGTT 59.669 50.000 0.00 0.00 38.69 3.01
4388 4579 0.607217 TGTGCCAGAGCCATGAGTTG 60.607 55.000 0.00 0.00 38.69 3.16
4399 4590 3.090952 CCATGAGTTGGTCGAGAGATC 57.909 52.381 0.00 0.00 45.19 2.75
4400 4591 2.692557 CCATGAGTTGGTCGAGAGATCT 59.307 50.000 0.00 0.00 43.23 2.75
4401 4592 3.131933 CCATGAGTTGGTCGAGAGATCTT 59.868 47.826 0.00 0.00 43.23 2.40
4402 4593 4.339530 CCATGAGTTGGTCGAGAGATCTTA 59.660 45.833 0.00 0.00 43.23 2.10
4403 4594 5.010516 CCATGAGTTGGTCGAGAGATCTTAT 59.989 44.000 0.00 0.00 43.23 1.73
4404 4595 5.506686 TGAGTTGGTCGAGAGATCTTATG 57.493 43.478 0.00 0.00 43.23 1.90
4405 4596 4.339530 TGAGTTGGTCGAGAGATCTTATGG 59.660 45.833 0.00 0.00 43.23 2.74
4406 4597 3.639094 AGTTGGTCGAGAGATCTTATGGG 59.361 47.826 0.00 0.00 43.23 4.00
4407 4598 3.314307 TGGTCGAGAGATCTTATGGGT 57.686 47.619 0.00 0.00 43.23 4.51
4408 4599 3.643237 TGGTCGAGAGATCTTATGGGTT 58.357 45.455 0.00 0.00 43.23 4.11
4409 4600 4.030913 TGGTCGAGAGATCTTATGGGTTT 58.969 43.478 0.00 0.00 43.23 3.27
4410 4601 4.099573 TGGTCGAGAGATCTTATGGGTTTC 59.900 45.833 0.00 0.00 43.23 2.78
4411 4602 4.099573 GGTCGAGAGATCTTATGGGTTTCA 59.900 45.833 0.00 0.00 45.19 2.69
4412 4603 5.044558 GTCGAGAGATCTTATGGGTTTCAC 58.955 45.833 0.00 0.00 45.19 3.18
4413 4604 4.099573 TCGAGAGATCTTATGGGTTTCACC 59.900 45.833 0.00 0.00 33.76 4.02
4414 4605 4.100189 CGAGAGATCTTATGGGTTTCACCT 59.900 45.833 0.00 0.00 38.64 4.00
4415 4606 5.606505 GAGAGATCTTATGGGTTTCACCTC 58.393 45.833 0.00 0.00 38.64 3.85
4416 4607 5.284582 AGAGATCTTATGGGTTTCACCTCT 58.715 41.667 0.00 0.00 38.64 3.69
4417 4608 6.444704 AGAGATCTTATGGGTTTCACCTCTA 58.555 40.000 0.00 0.00 38.64 2.43
4418 4609 6.553100 AGAGATCTTATGGGTTTCACCTCTAG 59.447 42.308 0.00 0.00 38.64 2.43
4419 4610 4.755266 TCTTATGGGTTTCACCTCTAGC 57.245 45.455 0.00 0.00 38.64 3.42
4420 4611 3.454812 TCTTATGGGTTTCACCTCTAGCC 59.545 47.826 0.00 0.00 38.64 3.93
4421 4612 1.972588 ATGGGTTTCACCTCTAGCCT 58.027 50.000 0.00 0.00 38.64 4.58
4422 4613 2.634639 TGGGTTTCACCTCTAGCCTA 57.365 50.000 0.00 0.00 38.64 3.93
4423 4614 2.185387 TGGGTTTCACCTCTAGCCTAC 58.815 52.381 0.00 0.00 38.64 3.18
4424 4615 1.485480 GGGTTTCACCTCTAGCCTACC 59.515 57.143 0.00 0.00 38.64 3.18
4425 4616 1.485480 GGTTTCACCTCTAGCCTACCC 59.515 57.143 0.00 0.00 34.73 3.69
4426 4617 1.485480 GTTTCACCTCTAGCCTACCCC 59.515 57.143 0.00 0.00 0.00 4.95
4427 4618 0.714180 TTCACCTCTAGCCTACCCCA 59.286 55.000 0.00 0.00 0.00 4.96
4428 4619 0.714180 TCACCTCTAGCCTACCCCAA 59.286 55.000 0.00 0.00 0.00 4.12
4429 4620 0.831307 CACCTCTAGCCTACCCCAAC 59.169 60.000 0.00 0.00 0.00 3.77
4430 4621 0.717196 ACCTCTAGCCTACCCCAACT 59.283 55.000 0.00 0.00 0.00 3.16
4431 4622 1.080666 ACCTCTAGCCTACCCCAACTT 59.919 52.381 0.00 0.00 0.00 2.66
4432 4623 1.486726 CCTCTAGCCTACCCCAACTTG 59.513 57.143 0.00 0.00 0.00 3.16
4433 4624 2.188817 CTCTAGCCTACCCCAACTTGT 58.811 52.381 0.00 0.00 0.00 3.16
4434 4625 2.572104 CTCTAGCCTACCCCAACTTGTT 59.428 50.000 0.00 0.00 0.00 2.83
4435 4626 2.983898 TCTAGCCTACCCCAACTTGTTT 59.016 45.455 0.00 0.00 0.00 2.83
4436 4627 1.995376 AGCCTACCCCAACTTGTTTG 58.005 50.000 0.00 0.00 34.63 2.93
4447 4638 3.977427 CAACTTGTTTGGGACTAAAGGC 58.023 45.455 0.00 0.00 0.00 4.35
4448 4639 3.595190 ACTTGTTTGGGACTAAAGGCT 57.405 42.857 0.00 0.00 0.00 4.58
4449 4640 3.910989 ACTTGTTTGGGACTAAAGGCTT 58.089 40.909 0.00 0.00 0.00 4.35
4450 4641 4.286707 ACTTGTTTGGGACTAAAGGCTTT 58.713 39.130 17.76 17.76 0.00 3.51
4451 4642 4.099419 ACTTGTTTGGGACTAAAGGCTTTG 59.901 41.667 22.32 13.97 0.00 2.77
4452 4643 3.637769 TGTTTGGGACTAAAGGCTTTGT 58.362 40.909 22.32 16.86 0.00 2.83
4453 4644 4.027437 TGTTTGGGACTAAAGGCTTTGTT 58.973 39.130 22.32 8.73 0.00 2.83
4454 4645 5.202004 TGTTTGGGACTAAAGGCTTTGTTA 58.798 37.500 22.32 1.59 0.00 2.41
4455 4646 5.836358 TGTTTGGGACTAAAGGCTTTGTTAT 59.164 36.000 22.32 4.89 0.00 1.89
4456 4647 6.325286 TGTTTGGGACTAAAGGCTTTGTTATT 59.675 34.615 22.32 1.84 0.00 1.40
4457 4648 5.975693 TGGGACTAAAGGCTTTGTTATTG 57.024 39.130 22.32 7.79 0.00 1.90
4458 4649 5.390387 TGGGACTAAAGGCTTTGTTATTGT 58.610 37.500 22.32 10.58 0.00 2.71
4459 4650 5.836358 TGGGACTAAAGGCTTTGTTATTGTT 59.164 36.000 22.32 0.00 0.00 2.83
4460 4651 6.156519 GGGACTAAAGGCTTTGTTATTGTTG 58.843 40.000 22.32 0.00 0.00 3.33
4461 4652 6.239204 GGGACTAAAGGCTTTGTTATTGTTGT 60.239 38.462 22.32 0.47 0.00 3.32
4462 4653 7.207383 GGACTAAAGGCTTTGTTATTGTTGTT 58.793 34.615 22.32 0.00 0.00 2.83
4463 4654 7.169140 GGACTAAAGGCTTTGTTATTGTTGTTG 59.831 37.037 22.32 0.00 0.00 3.33
4464 4655 7.552459 ACTAAAGGCTTTGTTATTGTTGTTGT 58.448 30.769 22.32 0.00 0.00 3.32
4465 4656 8.038351 ACTAAAGGCTTTGTTATTGTTGTTGTT 58.962 29.630 22.32 0.00 0.00 2.83
4466 4657 6.660887 AAGGCTTTGTTATTGTTGTTGTTG 57.339 33.333 0.00 0.00 0.00 3.33
4467 4658 5.729510 AGGCTTTGTTATTGTTGTTGTTGT 58.270 33.333 0.00 0.00 0.00 3.32
4468 4659 6.169800 AGGCTTTGTTATTGTTGTTGTTGTT 58.830 32.000 0.00 0.00 0.00 2.83
4469 4660 6.091986 AGGCTTTGTTATTGTTGTTGTTGTTG 59.908 34.615 0.00 0.00 0.00 3.33
4470 4661 6.128418 GGCTTTGTTATTGTTGTTGTTGTTGT 60.128 34.615 0.00 0.00 0.00 3.32
4471 4662 7.294473 GCTTTGTTATTGTTGTTGTTGTTGTT 58.706 30.769 0.00 0.00 0.00 2.83
4472 4663 7.268023 GCTTTGTTATTGTTGTTGTTGTTGTTG 59.732 33.333 0.00 0.00 0.00 3.33
4473 4664 7.715265 TTGTTATTGTTGTTGTTGTTGTTGT 57.285 28.000 0.00 0.00 0.00 3.32
4474 4665 7.715265 TGTTATTGTTGTTGTTGTTGTTGTT 57.285 28.000 0.00 0.00 0.00 2.83
4555 4746 5.583061 TCATCGTCTTGAACTCTAGTCTCTC 59.417 44.000 0.00 0.00 0.00 3.20
4600 4791 4.471386 TCTTAGGCCTCTTTACATTCAGCT 59.529 41.667 9.68 0.00 0.00 4.24
4799 5119 1.404391 GGGCATTGACATTGCTCTCAG 59.596 52.381 18.85 0.00 37.60 3.35
4882 5202 9.369904 GGCATTGTTCATTGTTTTTGATATAGT 57.630 29.630 0.00 0.00 0.00 2.12
4941 5261 5.422012 ACCTAGCCTTATGGTTTTTCATTGG 59.578 40.000 0.00 0.00 35.27 3.16
4948 5268 6.073112 CCTTATGGTTTTTCATTGGCTGTTTG 60.073 38.462 0.00 0.00 0.00 2.93
4963 5283 4.219033 GCTGTTTGTTTTCGTCAGGTATG 58.781 43.478 0.00 0.00 0.00 2.39
4997 5317 1.901085 GATTGACCGAGGGCAGAGT 59.099 57.895 0.00 0.00 0.00 3.24
5043 5363 4.321156 GCAATTGCATTCCACTCAGTGTAA 60.321 41.667 25.36 0.00 41.59 2.41
5048 5368 3.064545 GCATTCCACTCAGTGTAAGATGC 59.935 47.826 3.56 9.61 31.34 3.91
5053 5373 1.556911 ACTCAGTGTAAGATGCCCCTG 59.443 52.381 0.00 0.00 0.00 4.45
5069 5389 0.307453 CCTGATCTCTCTCGCACTCG 59.693 60.000 0.00 0.00 0.00 4.18
5073 5393 1.029408 ATCTCTCTCGCACTCGCACT 61.029 55.000 0.00 0.00 38.40 4.40
5120 5440 2.034305 AGCCTAATCTAACGTACGCAGG 59.966 50.000 16.72 11.09 0.00 4.85
5123 5443 1.636988 AATCTAACGTACGCAGGCAC 58.363 50.000 16.72 0.00 0.00 5.01
5161 5481 2.478370 GCGGATGTGATGGATTTGTGTG 60.478 50.000 0.00 0.00 0.00 3.82
5180 5500 2.029918 GTGCACTTGGGATGGAGAAAAC 60.030 50.000 10.32 0.00 0.00 2.43
5213 5533 2.166907 TTCAGGTTTTTCTTGCCCCA 57.833 45.000 0.00 0.00 0.00 4.96
5236 5556 5.343058 CACGATTTATCTGCCAAACAAACTG 59.657 40.000 0.00 0.00 0.00 3.16
5435 5756 8.237811 ACCAAAATTTTGCTATACCATAGGAG 57.762 34.615 22.90 8.50 36.86 3.69
5485 5806 1.461897 CGAACCGTCAATTTAACCGCT 59.538 47.619 0.00 0.00 0.00 5.52
5570 5891 0.247736 AGTAAAGCCGAGGCACTGAG 59.752 55.000 17.18 0.00 41.55 3.35
5632 5953 1.561643 TAGTTCAGAGGCTCACTGGG 58.438 55.000 18.26 0.63 36.22 4.45
5638 5959 0.692419 AGAGGCTCACTGGGGTATGG 60.692 60.000 18.26 0.00 0.00 2.74
5672 5993 5.531287 ACTTAGTTTTAGCTGAAACTGTGGG 59.469 40.000 34.57 24.81 46.33 4.61
5687 6016 5.069501 ACTGTGGGTTCGTTCTAATACTC 57.930 43.478 0.00 0.00 0.00 2.59
5723 6057 6.543100 TGGGGTTTTACAGTAGTACAGTTTTG 59.457 38.462 3.46 0.00 0.00 2.44
5725 6059 6.432936 GGTTTTACAGTAGTACAGTTTTGCC 58.567 40.000 3.46 0.00 0.00 4.52
5810 6152 1.139163 CCATTTGCACCGAAAGTTGC 58.861 50.000 0.00 0.00 0.00 4.17
5864 6207 0.540365 CTGGTTTCACCCTGGCATGT 60.540 55.000 0.00 0.00 37.50 3.21
5978 6322 9.843334 GACACTGGCACTATATTAGTATTACTC 57.157 37.037 0.00 0.00 37.23 2.59
5980 6324 8.803235 CACTGGCACTATATTAGTATTACTCCA 58.197 37.037 0.00 0.00 37.23 3.86
5983 6327 9.150028 TGGCACTATATTAGTATTACTCCAACA 57.850 33.333 0.00 0.00 37.23 3.33
5984 6328 9.640963 GGCACTATATTAGTATTACTCCAACAG 57.359 37.037 0.00 0.00 37.23 3.16
5996 6449 3.766545 ACTCCAACAGGCAACAACATAT 58.233 40.909 0.00 0.00 41.41 1.78
6107 6560 1.209128 CGTAATCGAGCATGTGGGAC 58.791 55.000 0.00 0.00 39.71 4.46
6109 6562 1.107945 TAATCGAGCATGTGGGACGA 58.892 50.000 0.00 0.00 37.39 4.20
6110 6563 0.465705 AATCGAGCATGTGGGACGAT 59.534 50.000 0.00 0.00 43.73 3.73
6137 6590 4.212847 TCGATCGACGCTAAGCTAAACTAT 59.787 41.667 15.15 0.00 42.26 2.12
6182 6635 5.648960 TCATGCTGCATCTCATTTTCTAACA 59.351 36.000 13.10 0.00 0.00 2.41
6188 6641 7.606858 TGCATCTCATTTTCTAACAAGAGAG 57.393 36.000 0.00 0.00 35.81 3.20
6212 6665 2.682856 CCAGTGCATGTACATTGTACCC 59.317 50.000 21.20 11.74 0.00 3.69
6214 6667 1.063469 GTGCATGTACATTGTACCCGC 59.937 52.381 21.20 21.49 0.00 6.13
6215 6668 0.661020 GCATGTACATTGTACCCGCC 59.339 55.000 21.20 6.43 0.00 6.13
6248 6704 3.577231 CGTTCTGCGCTGATCCTAT 57.423 52.632 18.14 0.00 0.00 2.57
6249 6705 1.413382 CGTTCTGCGCTGATCCTATC 58.587 55.000 18.14 4.42 0.00 2.08
6250 6706 1.789506 GTTCTGCGCTGATCCTATCC 58.210 55.000 18.14 0.00 0.00 2.59
6251 6707 1.342819 GTTCTGCGCTGATCCTATCCT 59.657 52.381 18.14 0.00 0.00 3.24
6252 6708 2.558795 GTTCTGCGCTGATCCTATCCTA 59.441 50.000 18.14 0.00 0.00 2.94
6255 6711 1.889170 TGCGCTGATCCTATCCTACAG 59.111 52.381 9.73 0.00 0.00 2.74
6256 6712 1.203523 GCGCTGATCCTATCCTACAGG 59.796 57.143 0.00 0.00 34.20 4.00
6257 6713 1.203523 CGCTGATCCTATCCTACAGGC 59.796 57.143 0.00 0.00 32.82 4.85
6258 6714 1.552792 GCTGATCCTATCCTACAGGCC 59.447 57.143 0.00 0.00 32.82 5.19
6259 6715 2.894731 CTGATCCTATCCTACAGGCCA 58.105 52.381 5.01 0.00 32.82 5.36
6260 6716 2.564947 CTGATCCTATCCTACAGGCCAC 59.435 54.545 5.01 0.00 32.82 5.01
6261 6717 2.090775 TGATCCTATCCTACAGGCCACA 60.091 50.000 5.01 0.00 32.82 4.17
6262 6718 2.795291 TCCTATCCTACAGGCCACAT 57.205 50.000 5.01 0.00 32.82 3.21
6263 6719 2.609747 TCCTATCCTACAGGCCACATC 58.390 52.381 5.01 0.00 32.82 3.06
6264 6720 1.625818 CCTATCCTACAGGCCACATCC 59.374 57.143 5.01 0.00 34.44 3.51
6265 6721 1.273606 CTATCCTACAGGCCACATCCG 59.726 57.143 5.01 0.00 34.44 4.18
6266 6722 2.044806 ATCCTACAGGCCACATCCGC 62.045 60.000 5.01 0.00 34.44 5.54
6267 6723 2.584064 CTACAGGCCACATCCGCA 59.416 61.111 5.01 0.00 0.00 5.69
6268 6724 1.522355 CTACAGGCCACATCCGCAG 60.522 63.158 5.01 0.00 0.00 5.18
6269 6725 2.244117 CTACAGGCCACATCCGCAGT 62.244 60.000 5.01 0.00 0.00 4.40
6336 6793 3.120373 CCTTTGTTTTTGTTGTGTGGTGC 60.120 43.478 0.00 0.00 0.00 5.01
6342 6799 2.765108 TTGTTGTGTGGTGCAATACG 57.235 45.000 0.00 0.00 0.00 3.06
6347 6804 0.953471 GTGTGGTGCAATACGCTGGA 60.953 55.000 7.64 0.00 43.06 3.86
6365 6822 0.512952 GAGCGCCTGTATTATTGCCG 59.487 55.000 2.29 0.00 0.00 5.69
6382 6839 3.237741 GGAGGCCGAGGGGATCAG 61.238 72.222 0.00 0.00 34.06 2.90
6542 6999 1.880796 GTTTTGCCCACACGTTGCC 60.881 57.895 0.00 0.00 0.00 4.52
6552 7009 0.949105 ACACGTTGCCTCACGATTCC 60.949 55.000 7.14 0.00 43.15 3.01
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
1 2 2.158755 GGTATGGAGGCACATTAGCTGT 60.159 50.000 0.00 0.00 39.20 4.40
2 3 2.498167 GGTATGGAGGCACATTAGCTG 58.502 52.381 0.00 0.00 32.39 4.24
3 4 1.070758 CGGTATGGAGGCACATTAGCT 59.929 52.381 0.00 0.00 32.39 3.32
4 5 1.070134 TCGGTATGGAGGCACATTAGC 59.930 52.381 0.03 0.00 32.39 3.09
5 6 2.102420 TGTCGGTATGGAGGCACATTAG 59.898 50.000 0.03 0.00 32.39 1.73
6 7 2.112190 TGTCGGTATGGAGGCACATTA 58.888 47.619 0.03 0.00 32.39 1.90
7 8 0.908910 TGTCGGTATGGAGGCACATT 59.091 50.000 0.03 0.00 32.39 2.71
8 9 0.178068 GTGTCGGTATGGAGGCACAT 59.822 55.000 0.49 0.49 34.90 3.21
9 10 1.594833 GTGTCGGTATGGAGGCACA 59.405 57.895 0.00 0.00 0.00 4.57
18 19 1.205417 CAAAGGGTACGGTGTCGGTAT 59.795 52.381 0.00 0.00 41.39 2.73
29 30 7.439157 AAACTTATCCGTTTACAAAGGGTAC 57.561 36.000 11.94 0.00 42.84 3.34
33 34 8.132995 ACAGAAAAACTTATCCGTTTACAAAGG 58.867 33.333 0.00 0.00 36.16 3.11
41 42 7.812690 AAGGTTACAGAAAAACTTATCCGTT 57.187 32.000 0.00 0.00 34.63 4.44
43 44 7.333672 AGCTAAGGTTACAGAAAAACTTATCCG 59.666 37.037 0.00 0.00 37.85 4.18
130 131 9.778741 TCTGCTCGATTAAGGTTATGAAATTAT 57.221 29.630 0.00 0.00 0.00 1.28
135 136 5.601662 CCTCTGCTCGATTAAGGTTATGAA 58.398 41.667 0.00 0.00 0.00 2.57
222 223 2.015736 ACTTGAGTGATAGCCAAGCG 57.984 50.000 0.00 0.00 40.51 4.68
234 235 6.919721 TGCTCAAAACTTAAAACACTTGAGT 58.080 32.000 10.37 0.00 41.07 3.41
237 238 6.806249 TGACTGCTCAAAACTTAAAACACTTG 59.194 34.615 0.00 0.00 0.00 3.16
251 252 6.263710 AGCTTAGCTCATTTGACTGCTCAAA 61.264 40.000 0.00 3.85 41.81 2.69
280 282 1.536709 GCGGGACATGCATTTCATTCC 60.537 52.381 14.52 5.96 34.46 3.01
296 298 4.576463 ACATTAGATTTTGAGCTTAGCGGG 59.424 41.667 0.00 0.00 0.00 6.13
298 300 4.966366 GCACATTAGATTTTGAGCTTAGCG 59.034 41.667 0.00 0.00 0.00 4.26
306 308 6.489700 TCCAAGTTGAGCACATTAGATTTTGA 59.510 34.615 3.87 0.00 0.00 2.69
323 325 2.039084 AGAGTGGCCTACTTCCAAGTTG 59.961 50.000 3.32 0.00 40.53 3.16
339 341 3.944015 GGGATCCTCACAATGAAAGAGTG 59.056 47.826 12.58 0.00 34.67 3.51
340 342 3.369892 CGGGATCCTCACAATGAAAGAGT 60.370 47.826 12.58 0.00 0.00 3.24
341 343 3.201290 CGGGATCCTCACAATGAAAGAG 58.799 50.000 12.58 0.00 0.00 2.85
342 344 2.680805 GCGGGATCCTCACAATGAAAGA 60.681 50.000 12.58 0.00 0.00 2.52
343 345 1.672881 GCGGGATCCTCACAATGAAAG 59.327 52.381 12.58 0.00 0.00 2.62
344 346 1.681780 GGCGGGATCCTCACAATGAAA 60.682 52.381 12.58 0.00 0.00 2.69
345 347 0.107214 GGCGGGATCCTCACAATGAA 60.107 55.000 12.58 0.00 0.00 2.57
346 348 0.982852 AGGCGGGATCCTCACAATGA 60.983 55.000 12.58 0.00 0.00 2.57
347 349 0.758734 TAGGCGGGATCCTCACAATG 59.241 55.000 12.58 0.00 37.66 2.82
348 350 1.625818 GATAGGCGGGATCCTCACAAT 59.374 52.381 12.58 0.34 37.66 2.71
349 351 1.048601 GATAGGCGGGATCCTCACAA 58.951 55.000 12.58 0.00 37.66 3.33
350 352 0.105709 TGATAGGCGGGATCCTCACA 60.106 55.000 12.58 0.42 37.66 3.58
351 353 0.318762 GTGATAGGCGGGATCCTCAC 59.681 60.000 12.58 12.41 37.66 3.51
352 354 0.188587 AGTGATAGGCGGGATCCTCA 59.811 55.000 12.58 3.13 37.66 3.86
353 355 0.892063 GAGTGATAGGCGGGATCCTC 59.108 60.000 12.58 3.79 37.66 3.71
354 356 0.188587 TGAGTGATAGGCGGGATCCT 59.811 55.000 12.58 0.00 40.21 3.24
355 357 1.001406 CTTGAGTGATAGGCGGGATCC 59.999 57.143 1.92 1.92 0.00 3.36
356 358 1.689273 ACTTGAGTGATAGGCGGGATC 59.311 52.381 0.00 0.00 0.00 3.36
357 359 1.794714 ACTTGAGTGATAGGCGGGAT 58.205 50.000 0.00 0.00 0.00 3.85
358 360 3.300032 ACTTGAGTGATAGGCGGGA 57.700 52.632 0.00 0.00 0.00 5.14
369 371 6.919721 TGCTCAAAACTTAAAACACTTGAGT 58.080 32.000 10.37 0.00 41.07 3.41
408 411 1.477553 TGCATTTCATTCCCAGGAGC 58.522 50.000 0.00 0.00 0.00 4.70
433 436 4.966366 GCACATTAGATTTTGAGCTTAGCG 59.034 41.667 0.00 0.00 0.00 4.26
441 444 5.122239 CCAAGTCGAGCACATTAGATTTTGA 59.878 40.000 0.00 0.00 0.00 2.69
458 461 0.608640 AGTGGCCTACTTCCAAGTCG 59.391 55.000 3.32 0.00 40.37 4.18
461 464 3.244561 TGAAAGAGTGGCCTACTTCCAAG 60.245 47.826 3.32 0.00 40.53 3.61
472 475 2.783135 TCCTCACAATGAAAGAGTGGC 58.217 47.619 0.00 0.00 34.17 5.01
484 487 9.273016 CTACAGACTAAAAGAAAATCCTCACAA 57.727 33.333 0.00 0.00 0.00 3.33
513 517 3.963129 TGTCATTAGTAGGCAAAAGGGG 58.037 45.455 0.00 0.00 0.00 4.79
593 597 7.176865 CAGATAACGGATCCTTCTAATCCAGTA 59.823 40.741 10.75 0.00 42.45 2.74
639 643 7.159437 TGCAACAAAGTGAATATTTGAAACG 57.841 32.000 5.50 0.00 39.50 3.60
655 659 6.883756 TCTGTTGAGATATGGTATGCAACAAA 59.116 34.615 0.00 0.00 43.14 2.83
684 688 4.461431 GGTGAATTCAGGGGAAAATTACGT 59.539 41.667 8.80 0.00 36.43 3.57
694 698 3.217626 GCTTATCTGGTGAATTCAGGGG 58.782 50.000 8.80 1.90 33.36 4.79
696 700 2.874701 CGGCTTATCTGGTGAATTCAGG 59.125 50.000 8.80 2.63 33.36 3.86
721 749 2.305607 GGGCTGGGTGTATGGTCCA 61.306 63.158 0.00 0.00 0.00 4.02
977 1005 2.123640 GGTCGGGAGGAGGAGGAG 60.124 72.222 0.00 0.00 0.00 3.69
978 1006 3.752167 GGGTCGGGAGGAGGAGGA 61.752 72.222 0.00 0.00 0.00 3.71
979 1007 4.862823 GGGGTCGGGAGGAGGAGG 62.863 77.778 0.00 0.00 0.00 4.30
1191 1219 1.963190 GCCGCTAGGGTTTCGTTTCG 61.963 60.000 6.02 0.00 38.44 3.46
1490 1527 2.046700 GCGTCCCCGACCATTCAA 60.047 61.111 0.00 0.00 35.63 2.69
1499 1536 2.211619 TAAACTGTACCGCGTCCCCG 62.212 60.000 4.92 0.00 37.07 5.73
1518 1555 2.345244 CTCCGCCTCTGTTGTGCT 59.655 61.111 0.00 0.00 0.00 4.40
1561 1621 1.307097 CGACCCTACTTCCTACCGAG 58.693 60.000 0.00 0.00 0.00 4.63
1793 1878 3.786101 CAGCGAACTGGACCATCG 58.214 61.111 12.27 12.27 40.48 3.84
1824 1909 8.984855 AGTAATTAAGCAAGTACCTGTGGTATA 58.015 33.333 0.00 0.00 40.54 1.47
1829 1914 7.624344 GCAAGAGTAATTAAGCAAGTACCTGTG 60.624 40.741 0.00 0.00 36.16 3.66
1851 1936 0.031178 AGCAAAAGCGAACAGGCAAG 59.969 50.000 0.00 0.00 34.64 4.01
2025 2111 5.227238 AGAAATAAAGCATGAACTCGCTG 57.773 39.130 0.00 0.00 38.82 5.18
2099 2185 2.907634 TGTTGCACGGTAACAGAAGAA 58.092 42.857 4.05 0.00 33.43 2.52
2251 2337 7.696992 TGGGATTTAGGAACAACTATTGAAC 57.303 36.000 0.00 0.00 0.00 3.18
2349 2435 6.386927 TGTCTATTGATAAAGACCAGACCCAT 59.613 38.462 0.00 0.00 41.19 4.00
2397 2483 5.435686 AGCCATATTTCACCACTGTCTAA 57.564 39.130 0.00 0.00 0.00 2.10
2423 2510 6.186957 TGCCCACATTACAACTTCTGAATAT 58.813 36.000 0.00 0.00 0.00 1.28
2458 2545 4.625972 AAGGACAAACGTGGTAAACTTG 57.374 40.909 0.00 0.00 0.00 3.16
2958 3046 7.012044 GGTGTGTGTCCCAATAAGTGTATATTC 59.988 40.741 0.00 0.00 0.00 1.75
3140 3228 5.952526 ACGTCTTACCAGTTTTATTTGGG 57.047 39.130 0.00 0.00 38.82 4.12
3229 3317 8.821894 TGTTACACAAATCAACAAAAATAAGGC 58.178 29.630 0.00 0.00 0.00 4.35
3856 3956 7.543172 GCTTTGCTGTGAATCTTTCATTATGAA 59.457 33.333 3.20 3.20 42.47 2.57
4333 4524 0.990282 ATGCACCCCTGTCCATAGCT 60.990 55.000 0.00 0.00 0.00 3.32
4336 4527 0.623031 TCCATGCACCCCTGTCCATA 60.623 55.000 0.00 0.00 0.00 2.74
4338 4529 2.141011 CTTCCATGCACCCCTGTCCA 62.141 60.000 0.00 0.00 0.00 4.02
4340 4531 2.048603 GCTTCCATGCACCCCTGTC 61.049 63.158 0.00 0.00 0.00 3.51
4341 4532 2.036256 GCTTCCATGCACCCCTGT 59.964 61.111 0.00 0.00 0.00 4.00
4342 4533 1.304713 AAGCTTCCATGCACCCCTG 60.305 57.895 0.00 0.00 34.99 4.45
4343 4534 1.304713 CAAGCTTCCATGCACCCCT 60.305 57.895 0.00 0.00 34.99 4.79
4344 4535 3.010413 GCAAGCTTCCATGCACCCC 62.010 63.158 0.00 0.00 42.12 4.95
4345 4536 0.680921 TAGCAAGCTTCCATGCACCC 60.681 55.000 10.57 0.00 44.95 4.61
4346 4537 1.336125 GATAGCAAGCTTCCATGCACC 59.664 52.381 10.57 0.00 44.95 5.01
4347 4538 1.336125 GGATAGCAAGCTTCCATGCAC 59.664 52.381 10.57 2.11 44.95 4.57
4348 4539 1.064537 TGGATAGCAAGCTTCCATGCA 60.065 47.619 16.61 6.28 44.95 3.96
4349 4540 1.683943 TGGATAGCAAGCTTCCATGC 58.316 50.000 16.61 0.00 42.87 4.06
4352 4543 2.646930 CACATGGATAGCAAGCTTCCA 58.353 47.619 20.33 20.33 43.37 3.53
4353 4544 1.336125 GCACATGGATAGCAAGCTTCC 59.664 52.381 0.00 7.95 0.00 3.46
4354 4545 1.336125 GGCACATGGATAGCAAGCTTC 59.664 52.381 0.00 0.00 0.00 3.86
4355 4546 1.341285 TGGCACATGGATAGCAAGCTT 60.341 47.619 0.00 0.00 0.00 3.74
4356 4547 0.256752 TGGCACATGGATAGCAAGCT 59.743 50.000 0.00 0.00 0.00 3.74
4357 4548 0.666913 CTGGCACATGGATAGCAAGC 59.333 55.000 0.00 0.00 38.20 4.01
4358 4549 2.219458 CTCTGGCACATGGATAGCAAG 58.781 52.381 0.00 0.00 38.20 4.01
4359 4550 1.748244 GCTCTGGCACATGGATAGCAA 60.748 52.381 0.00 0.00 38.20 3.91
4360 4551 0.179037 GCTCTGGCACATGGATAGCA 60.179 55.000 0.00 0.00 38.20 3.49
4361 4552 0.888285 GGCTCTGGCACATGGATAGC 60.888 60.000 0.00 0.00 38.20 2.97
4362 4553 0.471191 TGGCTCTGGCACATGGATAG 59.529 55.000 0.00 0.00 38.20 2.08
4363 4554 1.142936 ATGGCTCTGGCACATGGATA 58.857 50.000 0.00 0.00 41.84 2.59
4364 4555 0.467474 CATGGCTCTGGCACATGGAT 60.467 55.000 7.68 0.00 41.84 3.41
4365 4556 1.077285 CATGGCTCTGGCACATGGA 60.077 57.895 7.68 0.00 41.84 3.41
4366 4557 1.077285 TCATGGCTCTGGCACATGG 60.077 57.895 13.76 0.00 41.84 3.66
4367 4558 0.393944 ACTCATGGCTCTGGCACATG 60.394 55.000 8.97 8.97 41.84 3.21
4368 4559 0.330604 AACTCATGGCTCTGGCACAT 59.669 50.000 0.00 0.00 41.84 3.21
4369 4560 0.607217 CAACTCATGGCTCTGGCACA 60.607 55.000 0.00 0.00 41.84 4.57
4370 4561 1.310933 CCAACTCATGGCTCTGGCAC 61.311 60.000 0.00 0.00 43.80 5.01
4371 4562 1.001764 CCAACTCATGGCTCTGGCA 60.002 57.895 0.00 0.00 43.80 4.92
4372 4563 3.915575 CCAACTCATGGCTCTGGC 58.084 61.111 0.00 0.00 43.80 4.85
4380 4571 4.383850 AAGATCTCTCGACCAACTCATG 57.616 45.455 0.00 0.00 0.00 3.07
4381 4572 5.010516 CCATAAGATCTCTCGACCAACTCAT 59.989 44.000 0.00 0.00 0.00 2.90
4382 4573 4.339530 CCATAAGATCTCTCGACCAACTCA 59.660 45.833 0.00 0.00 0.00 3.41
4383 4574 4.261825 CCCATAAGATCTCTCGACCAACTC 60.262 50.000 0.00 0.00 0.00 3.01
4384 4575 3.639094 CCCATAAGATCTCTCGACCAACT 59.361 47.826 0.00 0.00 0.00 3.16
4385 4576 3.385111 ACCCATAAGATCTCTCGACCAAC 59.615 47.826 0.00 0.00 0.00 3.77
4386 4577 3.643237 ACCCATAAGATCTCTCGACCAA 58.357 45.455 0.00 0.00 0.00 3.67
4387 4578 3.314307 ACCCATAAGATCTCTCGACCA 57.686 47.619 0.00 0.00 0.00 4.02
4388 4579 4.099573 TGAAACCCATAAGATCTCTCGACC 59.900 45.833 0.00 0.00 0.00 4.79
4389 4580 5.044558 GTGAAACCCATAAGATCTCTCGAC 58.955 45.833 0.00 0.00 0.00 4.20
4390 4581 5.263968 GTGAAACCCATAAGATCTCTCGA 57.736 43.478 0.00 0.00 0.00 4.04
4406 4597 1.485480 GGGGTAGGCTAGAGGTGAAAC 59.515 57.143 0.00 0.00 0.00 2.78
4407 4598 1.079825 TGGGGTAGGCTAGAGGTGAAA 59.920 52.381 0.00 0.00 0.00 2.69
4408 4599 0.714180 TGGGGTAGGCTAGAGGTGAA 59.286 55.000 0.00 0.00 0.00 3.18
4409 4600 0.714180 TTGGGGTAGGCTAGAGGTGA 59.286 55.000 0.00 0.00 0.00 4.02
4410 4601 0.831307 GTTGGGGTAGGCTAGAGGTG 59.169 60.000 0.00 0.00 0.00 4.00
4411 4602 0.717196 AGTTGGGGTAGGCTAGAGGT 59.283 55.000 0.00 0.00 0.00 3.85
4412 4603 1.486726 CAAGTTGGGGTAGGCTAGAGG 59.513 57.143 0.00 0.00 0.00 3.69
4413 4604 2.188817 ACAAGTTGGGGTAGGCTAGAG 58.811 52.381 7.96 0.00 0.00 2.43
4414 4605 2.337359 ACAAGTTGGGGTAGGCTAGA 57.663 50.000 7.96 0.00 0.00 2.43
4415 4606 3.081804 CAAACAAGTTGGGGTAGGCTAG 58.918 50.000 7.96 0.00 33.18 3.42
4416 4607 3.149005 CAAACAAGTTGGGGTAGGCTA 57.851 47.619 7.96 0.00 33.18 3.93
4417 4608 1.995376 CAAACAAGTTGGGGTAGGCT 58.005 50.000 7.96 0.00 33.18 4.58
4426 4617 3.636764 AGCCTTTAGTCCCAAACAAGTTG 59.363 43.478 0.00 0.00 36.94 3.16
4427 4618 3.910989 AGCCTTTAGTCCCAAACAAGTT 58.089 40.909 0.00 0.00 0.00 2.66
4428 4619 3.595190 AGCCTTTAGTCCCAAACAAGT 57.405 42.857 0.00 0.00 0.00 3.16
4429 4620 4.099419 ACAAAGCCTTTAGTCCCAAACAAG 59.901 41.667 0.00 0.00 0.00 3.16
4430 4621 4.027437 ACAAAGCCTTTAGTCCCAAACAA 58.973 39.130 0.00 0.00 0.00 2.83
4431 4622 3.637769 ACAAAGCCTTTAGTCCCAAACA 58.362 40.909 0.00 0.00 0.00 2.83
4432 4623 4.665833 AACAAAGCCTTTAGTCCCAAAC 57.334 40.909 0.00 0.00 0.00 2.93
4433 4624 6.325286 ACAATAACAAAGCCTTTAGTCCCAAA 59.675 34.615 0.00 0.00 0.00 3.28
4434 4625 5.836358 ACAATAACAAAGCCTTTAGTCCCAA 59.164 36.000 0.00 0.00 0.00 4.12
4435 4626 5.390387 ACAATAACAAAGCCTTTAGTCCCA 58.610 37.500 0.00 0.00 0.00 4.37
4436 4627 5.977489 ACAATAACAAAGCCTTTAGTCCC 57.023 39.130 0.00 0.00 0.00 4.46
4437 4628 6.745116 ACAACAATAACAAAGCCTTTAGTCC 58.255 36.000 0.00 0.00 0.00 3.85
4438 4629 7.704899 ACAACAACAATAACAAAGCCTTTAGTC 59.295 33.333 0.00 0.00 0.00 2.59
4439 4630 7.552459 ACAACAACAATAACAAAGCCTTTAGT 58.448 30.769 0.00 0.00 0.00 2.24
4440 4631 8.327429 CAACAACAACAATAACAAAGCCTTTAG 58.673 33.333 0.00 0.00 0.00 1.85
4441 4632 7.819900 ACAACAACAACAATAACAAAGCCTTTA 59.180 29.630 0.00 0.00 0.00 1.85
4442 4633 6.652900 ACAACAACAACAATAACAAAGCCTTT 59.347 30.769 0.00 0.00 0.00 3.11
4443 4634 6.169800 ACAACAACAACAATAACAAAGCCTT 58.830 32.000 0.00 0.00 0.00 4.35
4444 4635 5.729510 ACAACAACAACAATAACAAAGCCT 58.270 33.333 0.00 0.00 0.00 4.58
4445 4636 6.128418 ACAACAACAACAACAATAACAAAGCC 60.128 34.615 0.00 0.00 0.00 4.35
4446 4637 6.826612 ACAACAACAACAACAATAACAAAGC 58.173 32.000 0.00 0.00 0.00 3.51
4447 4638 8.279103 ACAACAACAACAACAACAATAACAAAG 58.721 29.630 0.00 0.00 0.00 2.77
4448 4639 8.142994 ACAACAACAACAACAACAATAACAAA 57.857 26.923 0.00 0.00 0.00 2.83
4449 4640 7.715265 ACAACAACAACAACAACAATAACAA 57.285 28.000 0.00 0.00 0.00 2.83
4450 4641 7.307396 CCAACAACAACAACAACAACAATAACA 60.307 33.333 0.00 0.00 0.00 2.41
4451 4642 7.012358 CCAACAACAACAACAACAACAATAAC 58.988 34.615 0.00 0.00 0.00 1.89
4452 4643 6.929049 TCCAACAACAACAACAACAACAATAA 59.071 30.769 0.00 0.00 0.00 1.40
4453 4644 6.455647 TCCAACAACAACAACAACAACAATA 58.544 32.000 0.00 0.00 0.00 1.90
4454 4645 5.300752 TCCAACAACAACAACAACAACAAT 58.699 33.333 0.00 0.00 0.00 2.71
4455 4646 4.693283 TCCAACAACAACAACAACAACAA 58.307 34.783 0.00 0.00 0.00 2.83
4456 4647 4.322080 TCCAACAACAACAACAACAACA 57.678 36.364 0.00 0.00 0.00 3.33
4457 4648 4.747605 ACTTCCAACAACAACAACAACAAC 59.252 37.500 0.00 0.00 0.00 3.32
4458 4649 4.950050 ACTTCCAACAACAACAACAACAA 58.050 34.783 0.00 0.00 0.00 2.83
4459 4650 4.592485 ACTTCCAACAACAACAACAACA 57.408 36.364 0.00 0.00 0.00 3.33
4460 4651 4.985409 TGAACTTCCAACAACAACAACAAC 59.015 37.500 0.00 0.00 0.00 3.32
4461 4652 5.201713 TGAACTTCCAACAACAACAACAA 57.798 34.783 0.00 0.00 0.00 2.83
4462 4653 4.855715 TGAACTTCCAACAACAACAACA 57.144 36.364 0.00 0.00 0.00 3.33
4463 4654 7.033185 ACTATTGAACTTCCAACAACAACAAC 58.967 34.615 0.00 0.00 0.00 3.32
4464 4655 7.164230 ACTATTGAACTTCCAACAACAACAA 57.836 32.000 0.00 0.00 0.00 2.83
4465 4656 6.767524 ACTATTGAACTTCCAACAACAACA 57.232 33.333 0.00 0.00 0.00 3.33
4466 4657 8.474006 AAAACTATTGAACTTCCAACAACAAC 57.526 30.769 0.00 0.00 0.00 3.32
4799 5119 7.769044 TGACCTTATGTAGAATAAGAAGCCAAC 59.231 37.037 6.66 0.00 34.43 3.77
4941 5261 2.844122 ACCTGACGAAAACAAACAGC 57.156 45.000 0.00 0.00 0.00 4.40
4948 5268 5.008316 ACTTGAAACCATACCTGACGAAAAC 59.992 40.000 0.00 0.00 0.00 2.43
4963 5283 2.487762 TCAATCGATGGCACTTGAAACC 59.512 45.455 0.00 0.00 0.00 3.27
4991 5311 2.216898 GATATGCAACCCTCACTCTGC 58.783 52.381 0.00 0.00 35.32 4.26
4997 5317 4.853468 TTAACAGGATATGCAACCCTCA 57.147 40.909 0.00 0.00 0.00 3.86
5039 5359 2.968574 GAGAGATCAGGGGCATCTTACA 59.031 50.000 0.00 0.00 30.30 2.41
5043 5363 1.822854 CGAGAGAGATCAGGGGCATCT 60.823 57.143 0.00 0.00 33.01 2.90
5048 5368 0.754957 AGTGCGAGAGAGATCAGGGG 60.755 60.000 0.00 0.00 0.00 4.79
5053 5373 4.607024 GCGAGTGCGAGAGAGATC 57.393 61.111 0.00 0.00 40.82 2.75
5120 5440 2.353030 GTGGCAAACGTTCCGTGC 60.353 61.111 13.75 13.75 39.99 5.34
5161 5481 2.238521 TGTTTTCTCCATCCCAAGTGC 58.761 47.619 0.00 0.00 0.00 4.40
5180 5500 9.154847 AGAAAAACCTGAAACAATCTCTTTTTG 57.845 29.630 0.00 0.00 0.00 2.44
5213 5533 5.240623 TCAGTTTGTTTGGCAGATAAATCGT 59.759 36.000 3.39 0.00 0.00 3.73
5236 5556 7.050377 TGAATTCCTGACACAGAATTAGGATC 58.950 38.462 2.27 0.00 37.39 3.36
5292 5613 0.107312 CTGGGGGACTGCAATCAGAG 60.107 60.000 0.00 0.00 42.95 3.35
5295 5616 0.548926 TACCTGGGGGACTGCAATCA 60.549 55.000 0.00 0.00 36.25 2.57
5435 5756 3.837355 ACCTTGAATGATAGGGGAATGC 58.163 45.455 0.00 0.00 35.79 3.56
5485 5806 4.646945 TCATTCCTGTAAAGTGCAAAACCA 59.353 37.500 0.00 0.00 0.00 3.67
5514 5835 6.380190 ACATCGCGGATAAAGATCTTAGTAC 58.620 40.000 8.75 0.22 32.15 2.73
5570 5891 0.603975 AAGAAAGCGCACCTCACTCC 60.604 55.000 11.47 0.00 0.00 3.85
5632 5953 2.614829 AAGTGCGTATGTCCCATACC 57.385 50.000 8.39 3.45 0.00 2.73
5638 5959 4.868734 AGCTAAAACTAAGTGCGTATGTCC 59.131 41.667 0.00 0.00 0.00 4.02
5672 5993 7.699812 AGGTTTGTATCGAGTATTAGAACGAAC 59.300 37.037 0.00 0.00 38.22 3.95
5745 6079 0.173935 TTGGACCGCCACTATACGTG 59.826 55.000 0.00 0.00 45.94 4.49
5746 6080 1.117150 ATTGGACCGCCACTATACGT 58.883 50.000 0.00 0.00 45.94 3.57
5747 6081 1.864711 CAATTGGACCGCCACTATACG 59.135 52.381 0.00 0.00 45.94 3.06
5810 6152 7.746475 GGATTTACAACTTTGTTCGAGAGATTG 59.254 37.037 0.00 0.00 42.35 2.67
5864 6207 6.885918 ACACATGATTGATTGGAGTCAACATA 59.114 34.615 0.00 0.00 40.60 2.29
5952 6296 9.843334 GAGTAATACTAATATAGTGCCAGTGTC 57.157 37.037 0.00 0.00 39.81 3.67
5976 6320 3.507233 ACATATGTTGTTGCCTGTTGGAG 59.493 43.478 1.41 0.00 33.74 3.86
5978 6322 3.940209 ACATATGTTGTTGCCTGTTGG 57.060 42.857 1.41 0.00 33.74 3.77
5980 6324 5.312895 TGTCTACATATGTTGTTGCCTGTT 58.687 37.500 14.77 0.00 39.87 3.16
5983 6327 3.941483 GCTGTCTACATATGTTGTTGCCT 59.059 43.478 14.77 0.00 39.87 4.75
5984 6328 3.242413 CGCTGTCTACATATGTTGTTGCC 60.242 47.826 14.77 3.45 39.87 4.52
5996 6449 1.532604 CCCACCAGTCGCTGTCTACA 61.533 60.000 6.19 0.00 0.00 2.74
6137 6590 4.375406 GCCTGTGGCCTCCTACTA 57.625 61.111 3.32 0.00 44.06 1.82
6214 6667 4.148348 GCAGAACGCAGAATTATACTACGG 59.852 45.833 0.00 0.00 41.79 4.02
6215 6668 4.143803 CGCAGAACGCAGAATTATACTACG 60.144 45.833 0.00 0.00 42.60 3.51
6248 6704 2.731571 GCGGATGTGGCCTGTAGGA 61.732 63.158 3.32 0.00 37.39 2.94
6249 6705 2.203070 GCGGATGTGGCCTGTAGG 60.203 66.667 3.32 0.00 38.53 3.18
6250 6706 1.522355 CTGCGGATGTGGCCTGTAG 60.522 63.158 3.32 0.00 0.00 2.74
6251 6707 1.836999 AACTGCGGATGTGGCCTGTA 61.837 55.000 3.32 0.00 0.00 2.74
6252 6708 3.196207 AACTGCGGATGTGGCCTGT 62.196 57.895 3.32 0.00 0.00 4.00
6255 6711 3.134127 GGAACTGCGGATGTGGCC 61.134 66.667 0.00 0.00 0.00 5.36
6256 6712 3.499737 CGGAACTGCGGATGTGGC 61.500 66.667 0.00 0.00 0.00 5.01
6257 6713 3.499737 GCGGAACTGCGGATGTGG 61.500 66.667 0.00 0.00 0.00 4.17
6258 6714 2.741985 TGCGGAACTGCGGATGTG 60.742 61.111 0.00 0.00 37.81 3.21
6259 6715 2.742372 GTGCGGAACTGCGGATGT 60.742 61.111 0.00 0.00 37.81 3.06
6260 6716 3.853330 CGTGCGGAACTGCGGATG 61.853 66.667 0.00 0.00 37.81 3.51
6261 6717 4.373116 ACGTGCGGAACTGCGGAT 62.373 61.111 0.00 0.00 37.81 4.18
6265 6721 3.470567 CTCGACGTGCGGAACTGC 61.471 66.667 0.00 0.00 41.33 4.40
6266 6722 1.797933 CTCTCGACGTGCGGAACTG 60.798 63.158 0.00 0.00 41.33 3.16
6267 6723 2.259439 ACTCTCGACGTGCGGAACT 61.259 57.895 0.00 0.00 41.33 3.01
6268 6724 2.081212 CACTCTCGACGTGCGGAAC 61.081 63.158 0.00 0.00 41.33 3.62
6269 6725 2.183858 CTCACTCTCGACGTGCGGAA 62.184 60.000 0.00 0.00 41.33 4.30
6342 6799 1.532868 CAATAATACAGGCGCTCCAGC 59.467 52.381 7.64 0.00 37.78 4.85
6347 6804 2.616969 CGGCAATAATACAGGCGCT 58.383 52.632 7.64 0.00 44.06 5.92
6365 6822 3.237741 CTGATCCCCTCGGCCTCC 61.238 72.222 0.00 0.00 0.00 4.30
6382 6839 7.931275 TCCAGTATATGTATATCGCTGATCAC 58.069 38.462 13.38 0.00 32.43 3.06
6431 6888 2.510906 CCCGATCGAGGCCCAATT 59.489 61.111 18.66 0.00 0.00 2.32
6517 6974 1.650825 GTGTGGGCAAAACAAACAGG 58.349 50.000 0.00 0.00 0.00 4.00
6542 6999 2.416566 CCAGTCTGACAGGAATCGTGAG 60.417 54.545 13.48 0.00 0.00 3.51


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.