Multiple sequence alignment - TraesCS2A01G193900

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS2A01G193900 chr2A 100.000 3456 0 0 1 3456 162071126 162067671 0.000000e+00 6383.0
1 TraesCS2A01G193900 chr2A 84.749 1672 198 28 407 2063 162214810 162213181 0.000000e+00 1622.0
2 TraesCS2A01G193900 chr2D 91.408 2549 88 45 733 3231 138907358 138909825 0.000000e+00 3373.0
3 TraesCS2A01G193900 chr2D 86.312 1673 170 35 407 2063 138888069 138889698 0.000000e+00 1766.0
4 TraesCS2A01G193900 chr2D 94.484 417 14 5 1 414 625524666 625524256 4.870000e-178 634.0
5 TraesCS2A01G193900 chr2D 94.737 152 8 0 407 558 138907143 138907294 1.600000e-58 237.0
6 TraesCS2A01G193900 chr2D 100.000 34 0 0 3423 3456 138910114 138910147 2.880000e-06 63.9
7 TraesCS2A01G193900 chr2D 91.111 45 4 0 574 618 138907355 138907311 1.040000e-05 62.1
8 TraesCS2A01G193900 chr2B 93.670 1722 69 8 733 2452 197507614 197509297 0.000000e+00 2540.0
9 TraesCS2A01G193900 chr2B 84.800 1671 199 32 406 2063 197379099 197380727 0.000000e+00 1628.0
10 TraesCS2A01G193900 chr2B 91.976 835 27 19 2466 3288 197509282 197510088 0.000000e+00 1134.0
11 TraesCS2A01G193900 chr2B 83.990 762 102 9 406 1160 197353584 197354332 0.000000e+00 713.0
12 TraesCS2A01G193900 chr2B 92.763 152 11 0 407 558 197507399 197507550 1.610000e-53 220.0
13 TraesCS2A01G193900 chr5A 97.549 408 9 1 1 408 487830111 487830517 0.000000e+00 697.0
14 TraesCS2A01G193900 chr5A 97.531 405 10 0 1 405 450779166 450779570 0.000000e+00 693.0
15 TraesCS2A01G193900 chr7D 95.588 408 12 2 1 407 587109407 587109809 0.000000e+00 649.0
16 TraesCS2A01G193900 chr5D 95.110 409 13 2 1 407 35163246 35163649 3.760000e-179 638.0
17 TraesCS2A01G193900 chr5D 86.517 89 10 2 3283 3370 292715781 292715868 2.840000e-16 97.1
18 TraesCS2A01G193900 chr4D 94.878 410 13 2 1 407 438798011 438798415 4.870000e-178 634.0
19 TraesCS2A01G193900 chr4D 94.363 408 17 2 1 407 496112436 496112034 3.790000e-174 621.0
20 TraesCS2A01G193900 chr4D 88.372 86 8 2 3286 3370 31821999 31822083 6.100000e-18 102.0
21 TraesCS2A01G193900 chr1D 94.634 410 15 2 1 408 83123240 83123644 2.260000e-176 628.0
22 TraesCS2A01G193900 chr1B 95.455 198 9 0 1 198 605750529 605750726 2.000000e-82 316.0
23 TraesCS2A01G193900 chrUn 85.217 115 15 2 513 626 357003498 357003385 2.180000e-22 117.0
24 TraesCS2A01G193900 chr1A 89.655 87 8 1 3286 3371 82720016 82720102 3.650000e-20 110.0
25 TraesCS2A01G193900 chr6D 88.764 89 7 3 3284 3370 76197715 76197802 4.720000e-19 106.0
26 TraesCS2A01G193900 chr6B 89.286 84 9 0 3287 3370 12740201 12740118 4.720000e-19 106.0
27 TraesCS2A01G193900 chr6B 89.157 83 9 0 3286 3368 141106401 141106483 1.700000e-18 104.0
28 TraesCS2A01G193900 chr3B 89.412 85 7 2 3286 3369 804729604 804729687 4.720000e-19 106.0
29 TraesCS2A01G193900 chr4B 88.372 86 10 0 3284 3369 664775717 664775632 1.700000e-18 104.0
30 TraesCS2A01G193900 chr4B 89.157 83 8 1 3287 3369 37691066 37691147 6.100000e-18 102.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS2A01G193900 chr2A 162067671 162071126 3455 True 6383.000000 6383 100.000000 1 3456 1 chr2A.!!$R1 3455
1 TraesCS2A01G193900 chr2A 162213181 162214810 1629 True 1622.000000 1622 84.749000 407 2063 1 chr2A.!!$R2 1656
2 TraesCS2A01G193900 chr2D 138888069 138889698 1629 False 1766.000000 1766 86.312000 407 2063 1 chr2D.!!$F1 1656
3 TraesCS2A01G193900 chr2D 138907143 138910147 3004 False 1224.633333 3373 95.381667 407 3456 3 chr2D.!!$F2 3049
4 TraesCS2A01G193900 chr2B 197379099 197380727 1628 False 1628.000000 1628 84.800000 406 2063 1 chr2B.!!$F2 1657
5 TraesCS2A01G193900 chr2B 197507399 197510088 2689 False 1298.000000 2540 92.803000 407 3288 3 chr2B.!!$F3 2881
6 TraesCS2A01G193900 chr2B 197353584 197354332 748 False 713.000000 713 83.990000 406 1160 1 chr2B.!!$F1 754

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
509 510 0.249398 GGCGGACCTACATGTTGACT 59.751 55.0 2.3 0.0 0.00 3.41 F
2117 2167 0.107897 TGGTGTGACAGTGAAACGCT 60.108 50.0 0.0 0.0 45.86 5.07 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2243 2296 0.802494 CCGCGTGTAGCTTTTGGATT 59.198 50.000 4.92 0.0 45.59 3.01 R
3415 3564 1.404449 CGAGGTTGTACCGTTATGGCA 60.404 52.381 0.00 0.0 44.90 4.92 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
26 27 9.119418 TCTCTTCAATGACTTATGTGAAAAACA 57.881 29.630 0.00 0.00 44.79 2.83
27 28 9.734620 CTCTTCAATGACTTATGTGAAAAACAA 57.265 29.630 0.00 0.00 43.61 2.83
28 29 9.734620 TCTTCAATGACTTATGTGAAAAACAAG 57.265 29.630 0.00 0.00 43.61 3.16
29 30 7.928908 TCAATGACTTATGTGAAAAACAAGC 57.071 32.000 0.00 0.00 43.61 4.01
30 31 7.715657 TCAATGACTTATGTGAAAAACAAGCT 58.284 30.769 0.00 0.00 43.61 3.74
31 32 8.845227 TCAATGACTTATGTGAAAAACAAGCTA 58.155 29.630 0.00 0.00 43.61 3.32
32 33 8.905702 CAATGACTTATGTGAAAAACAAGCTAC 58.094 33.333 0.00 0.00 43.61 3.58
33 34 7.561021 TGACTTATGTGAAAAACAAGCTACA 57.439 32.000 0.00 0.00 43.61 2.74
34 35 7.639039 TGACTTATGTGAAAAACAAGCTACAG 58.361 34.615 0.00 0.00 43.61 2.74
35 36 7.497579 TGACTTATGTGAAAAACAAGCTACAGA 59.502 33.333 0.00 0.00 43.61 3.41
36 37 8.220755 ACTTATGTGAAAAACAAGCTACAGAA 57.779 30.769 0.00 0.00 43.61 3.02
37 38 8.850156 ACTTATGTGAAAAACAAGCTACAGAAT 58.150 29.630 0.00 0.00 43.61 2.40
44 45 9.474920 TGAAAAACAAGCTACAGAATAAAATGG 57.525 29.630 0.00 0.00 0.00 3.16
45 46 8.831715 AAAAACAAGCTACAGAATAAAATGGG 57.168 30.769 0.00 0.00 0.00 4.00
46 47 6.530019 AACAAGCTACAGAATAAAATGGGG 57.470 37.500 0.00 0.00 0.00 4.96
47 48 5.826643 ACAAGCTACAGAATAAAATGGGGA 58.173 37.500 0.00 0.00 0.00 4.81
48 49 6.252995 ACAAGCTACAGAATAAAATGGGGAA 58.747 36.000 0.00 0.00 0.00 3.97
49 50 6.897413 ACAAGCTACAGAATAAAATGGGGAAT 59.103 34.615 0.00 0.00 0.00 3.01
50 51 7.068716 ACAAGCTACAGAATAAAATGGGGAATC 59.931 37.037 0.00 0.00 0.00 2.52
51 52 6.672593 AGCTACAGAATAAAATGGGGAATCA 58.327 36.000 0.00 0.00 0.00 2.57
52 53 7.125391 AGCTACAGAATAAAATGGGGAATCAA 58.875 34.615 0.00 0.00 0.00 2.57
53 54 7.068716 AGCTACAGAATAAAATGGGGAATCAAC 59.931 37.037 0.00 0.00 0.00 3.18
54 55 7.068716 GCTACAGAATAAAATGGGGAATCAACT 59.931 37.037 0.00 0.00 0.00 3.16
55 56 7.410120 ACAGAATAAAATGGGGAATCAACTC 57.590 36.000 0.00 0.00 0.00 3.01
56 57 7.184862 ACAGAATAAAATGGGGAATCAACTCT 58.815 34.615 0.00 0.00 0.00 3.24
57 58 7.675619 ACAGAATAAAATGGGGAATCAACTCTT 59.324 33.333 0.00 0.00 0.00 2.85
58 59 7.977853 CAGAATAAAATGGGGAATCAACTCTTG 59.022 37.037 0.00 0.00 0.00 3.02
59 60 7.895429 AGAATAAAATGGGGAATCAACTCTTGA 59.105 33.333 0.00 0.00 45.01 3.02
60 61 8.434589 AATAAAATGGGGAATCAACTCTTGAA 57.565 30.769 0.00 0.00 43.95 2.69
61 62 6.940430 AAAATGGGGAATCAACTCTTGAAT 57.060 33.333 0.00 0.00 43.95 2.57
62 63 5.927281 AATGGGGAATCAACTCTTGAATG 57.073 39.130 0.00 0.00 43.95 2.67
63 64 4.656100 TGGGGAATCAACTCTTGAATGA 57.344 40.909 0.00 0.00 43.95 2.57
64 65 5.197224 TGGGGAATCAACTCTTGAATGAT 57.803 39.130 0.00 0.00 43.95 2.45
65 66 5.582953 TGGGGAATCAACTCTTGAATGATT 58.417 37.500 9.58 9.58 44.23 2.57
66 67 5.419788 TGGGGAATCAACTCTTGAATGATTG 59.580 40.000 12.83 0.00 42.26 2.67
67 68 5.346522 GGGAATCAACTCTTGAATGATTGC 58.653 41.667 15.36 15.36 45.52 3.56
68 69 5.126707 GGGAATCAACTCTTGAATGATTGCT 59.873 40.000 19.33 1.97 45.54 3.91
69 70 6.350780 GGGAATCAACTCTTGAATGATTGCTT 60.351 38.462 19.33 3.29 45.54 3.91
70 71 6.530534 GGAATCAACTCTTGAATGATTGCTTG 59.469 38.462 15.92 0.00 43.96 4.01
71 72 5.381174 TCAACTCTTGAATGATTGCTTGG 57.619 39.130 0.00 0.00 36.59 3.61
72 73 4.828939 TCAACTCTTGAATGATTGCTTGGT 59.171 37.500 0.00 0.00 36.59 3.67
73 74 5.302568 TCAACTCTTGAATGATTGCTTGGTT 59.697 36.000 0.00 0.00 36.59 3.67
74 75 6.489700 TCAACTCTTGAATGATTGCTTGGTTA 59.510 34.615 0.00 0.00 36.59 2.85
75 76 6.259550 ACTCTTGAATGATTGCTTGGTTAC 57.740 37.500 0.00 0.00 0.00 2.50
76 77 5.769662 ACTCTTGAATGATTGCTTGGTTACA 59.230 36.000 0.00 0.00 0.00 2.41
77 78 6.435277 ACTCTTGAATGATTGCTTGGTTACAT 59.565 34.615 0.00 0.00 0.00 2.29
78 79 7.039504 ACTCTTGAATGATTGCTTGGTTACATT 60.040 33.333 0.00 0.00 0.00 2.71
79 80 7.669427 TCTTGAATGATTGCTTGGTTACATTT 58.331 30.769 0.00 0.00 0.00 2.32
80 81 8.801299 TCTTGAATGATTGCTTGGTTACATTTA 58.199 29.630 0.00 0.00 0.00 1.40
81 82 9.590451 CTTGAATGATTGCTTGGTTACATTTAT 57.410 29.630 0.00 0.00 0.00 1.40
82 83 9.941325 TTGAATGATTGCTTGGTTACATTTATT 57.059 25.926 0.00 0.00 0.00 1.40
83 84 9.368674 TGAATGATTGCTTGGTTACATTTATTG 57.631 29.630 0.00 0.00 0.00 1.90
84 85 9.585099 GAATGATTGCTTGGTTACATTTATTGA 57.415 29.630 0.00 0.00 0.00 2.57
85 86 9.590451 AATGATTGCTTGGTTACATTTATTGAG 57.410 29.630 0.00 0.00 0.00 3.02
86 87 8.347004 TGATTGCTTGGTTACATTTATTGAGA 57.653 30.769 0.00 0.00 0.00 3.27
87 88 8.461222 TGATTGCTTGGTTACATTTATTGAGAG 58.539 33.333 0.00 0.00 0.00 3.20
88 89 6.757897 TGCTTGGTTACATTTATTGAGAGG 57.242 37.500 0.00 0.00 0.00 3.69
89 90 5.652014 TGCTTGGTTACATTTATTGAGAGGG 59.348 40.000 0.00 0.00 0.00 4.30
90 91 5.885912 GCTTGGTTACATTTATTGAGAGGGA 59.114 40.000 0.00 0.00 0.00 4.20
91 92 6.377146 GCTTGGTTACATTTATTGAGAGGGAA 59.623 38.462 0.00 0.00 0.00 3.97
92 93 7.068716 GCTTGGTTACATTTATTGAGAGGGAAT 59.931 37.037 0.00 0.00 0.00 3.01
93 94 8.893563 TTGGTTACATTTATTGAGAGGGAATT 57.106 30.769 0.00 0.00 0.00 2.17
94 95 8.519799 TGGTTACATTTATTGAGAGGGAATTC 57.480 34.615 0.00 0.00 0.00 2.17
95 96 8.336235 TGGTTACATTTATTGAGAGGGAATTCT 58.664 33.333 5.23 0.00 0.00 2.40
96 97 9.190317 GGTTACATTTATTGAGAGGGAATTCTT 57.810 33.333 5.23 0.00 0.00 2.52
120 121 6.713762 TTTTGAAGTGAAGGATGATGTTGT 57.286 33.333 0.00 0.00 0.00 3.32
121 122 5.947228 TTGAAGTGAAGGATGATGTTGTC 57.053 39.130 0.00 0.00 0.00 3.18
122 123 4.971939 TGAAGTGAAGGATGATGTTGTCA 58.028 39.130 0.00 0.00 42.06 3.58
135 136 6.146601 TGATGTTGTCATTTCTTGCTTTCA 57.853 33.333 0.00 0.00 34.06 2.69
136 137 6.571605 TGATGTTGTCATTTCTTGCTTTCAA 58.428 32.000 0.00 0.00 34.06 2.69
137 138 6.698329 TGATGTTGTCATTTCTTGCTTTCAAG 59.302 34.615 0.00 0.00 41.37 3.02
138 139 6.346359 GATGTTGTCATTTCTTGCTTTCAAGC 60.346 38.462 4.48 4.48 40.66 4.01
139 140 9.146532 GATGTTGTCATTTCTTGCTTTCAAGCC 62.147 40.741 9.06 0.00 41.76 4.35
149 150 2.064014 GCTTTCAAGCCATGACAAAGC 58.936 47.619 9.48 9.48 46.20 3.51
150 151 2.322161 CTTTCAAGCCATGACAAAGCG 58.678 47.619 0.00 0.00 37.92 4.68
151 152 1.317613 TTCAAGCCATGACAAAGCGT 58.682 45.000 0.00 0.00 37.92 5.07
152 153 2.177394 TCAAGCCATGACAAAGCGTA 57.823 45.000 0.00 0.00 31.50 4.42
153 154 2.710377 TCAAGCCATGACAAAGCGTAT 58.290 42.857 0.00 0.00 31.50 3.06
154 155 2.419673 TCAAGCCATGACAAAGCGTATG 59.580 45.455 0.00 0.00 31.50 2.39
155 156 1.382522 AGCCATGACAAAGCGTATGG 58.617 50.000 0.00 0.00 42.30 2.74
156 157 1.094785 GCCATGACAAAGCGTATGGT 58.905 50.000 0.00 0.00 41.62 3.55
157 158 1.064060 GCCATGACAAAGCGTATGGTC 59.936 52.381 0.00 0.00 41.62 4.02
158 159 1.327460 CCATGACAAAGCGTATGGTCG 59.673 52.381 0.00 0.00 36.25 4.79
159 160 2.267426 CATGACAAAGCGTATGGTCGA 58.733 47.619 0.00 0.00 33.04 4.20
160 161 1.990799 TGACAAAGCGTATGGTCGAG 58.009 50.000 0.00 0.00 33.04 4.04
161 162 1.271379 TGACAAAGCGTATGGTCGAGT 59.729 47.619 0.00 0.00 33.04 4.18
162 163 2.288579 TGACAAAGCGTATGGTCGAGTT 60.289 45.455 0.00 0.00 33.04 3.01
163 164 2.066262 ACAAAGCGTATGGTCGAGTTG 58.934 47.619 0.00 0.00 34.62 3.16
164 165 2.066262 CAAAGCGTATGGTCGAGTTGT 58.934 47.619 0.00 0.00 0.00 3.32
165 166 3.247442 CAAAGCGTATGGTCGAGTTGTA 58.753 45.455 0.00 0.00 0.00 2.41
166 167 3.581024 AAGCGTATGGTCGAGTTGTAA 57.419 42.857 0.00 0.00 0.00 2.41
167 168 3.795623 AGCGTATGGTCGAGTTGTAAT 57.204 42.857 0.00 0.00 0.00 1.89
168 169 4.119442 AGCGTATGGTCGAGTTGTAATT 57.881 40.909 0.00 0.00 0.00 1.40
169 170 4.501071 AGCGTATGGTCGAGTTGTAATTT 58.499 39.130 0.00 0.00 0.00 1.82
170 171 4.933400 AGCGTATGGTCGAGTTGTAATTTT 59.067 37.500 0.00 0.00 0.00 1.82
171 172 5.063060 AGCGTATGGTCGAGTTGTAATTTTC 59.937 40.000 0.00 0.00 0.00 2.29
172 173 5.063060 GCGTATGGTCGAGTTGTAATTTTCT 59.937 40.000 0.00 0.00 0.00 2.52
173 174 6.401796 GCGTATGGTCGAGTTGTAATTTTCTT 60.402 38.462 0.00 0.00 0.00 2.52
174 175 7.201461 GCGTATGGTCGAGTTGTAATTTTCTTA 60.201 37.037 0.00 0.00 0.00 2.10
175 176 8.814235 CGTATGGTCGAGTTGTAATTTTCTTAT 58.186 33.333 0.00 0.00 0.00 1.73
208 209 9.461312 TGTAATTTCCTTAATCTGTATTGCTGT 57.539 29.630 0.00 0.00 0.00 4.40
211 212 7.759489 TTTCCTTAATCTGTATTGCTGTTGT 57.241 32.000 0.00 0.00 0.00 3.32
212 213 7.759489 TTCCTTAATCTGTATTGCTGTTGTT 57.241 32.000 0.00 0.00 0.00 2.83
213 214 7.144722 TCCTTAATCTGTATTGCTGTTGTTG 57.855 36.000 0.00 0.00 0.00 3.33
214 215 6.714810 TCCTTAATCTGTATTGCTGTTGTTGT 59.285 34.615 0.00 0.00 0.00 3.32
215 216 6.803320 CCTTAATCTGTATTGCTGTTGTTGTG 59.197 38.462 0.00 0.00 0.00 3.33
216 217 7.308529 CCTTAATCTGTATTGCTGTTGTTGTGA 60.309 37.037 0.00 0.00 0.00 3.58
217 218 6.389830 AATCTGTATTGCTGTTGTTGTGAA 57.610 33.333 0.00 0.00 0.00 3.18
218 219 5.168526 TCTGTATTGCTGTTGTTGTGAAC 57.831 39.130 0.00 0.00 0.00 3.18
219 220 3.946402 TGTATTGCTGTTGTTGTGAACG 58.054 40.909 0.00 0.00 0.00 3.95
220 221 3.623510 TGTATTGCTGTTGTTGTGAACGA 59.376 39.130 0.00 0.00 0.00 3.85
221 222 3.773860 ATTGCTGTTGTTGTGAACGAA 57.226 38.095 0.00 0.00 0.00 3.85
222 223 3.773860 TTGCTGTTGTTGTGAACGAAT 57.226 38.095 0.00 0.00 0.00 3.34
223 224 3.773860 TGCTGTTGTTGTGAACGAATT 57.226 38.095 0.00 0.00 0.00 2.17
224 225 3.433709 TGCTGTTGTTGTGAACGAATTG 58.566 40.909 0.00 0.00 0.00 2.32
225 226 2.788786 GCTGTTGTTGTGAACGAATTGG 59.211 45.455 0.00 0.00 0.00 3.16
226 227 2.788786 CTGTTGTTGTGAACGAATTGGC 59.211 45.455 0.00 0.00 0.00 4.52
227 228 2.425312 TGTTGTTGTGAACGAATTGGCT 59.575 40.909 0.00 0.00 0.00 4.75
228 229 3.042887 GTTGTTGTGAACGAATTGGCTC 58.957 45.455 0.00 0.00 0.00 4.70
229 230 1.606668 TGTTGTGAACGAATTGGCTCC 59.393 47.619 0.00 0.00 0.00 4.70
230 231 1.880027 GTTGTGAACGAATTGGCTCCT 59.120 47.619 0.00 0.00 0.00 3.69
231 232 1.808411 TGTGAACGAATTGGCTCCTC 58.192 50.000 0.00 0.00 0.00 3.71
232 233 1.347707 TGTGAACGAATTGGCTCCTCT 59.652 47.619 0.00 0.00 0.00 3.69
233 234 1.734465 GTGAACGAATTGGCTCCTCTG 59.266 52.381 0.00 0.00 0.00 3.35
234 235 1.347707 TGAACGAATTGGCTCCTCTGT 59.652 47.619 0.00 0.00 0.00 3.41
235 236 2.224523 TGAACGAATTGGCTCCTCTGTT 60.225 45.455 0.00 0.00 0.00 3.16
236 237 3.007506 TGAACGAATTGGCTCCTCTGTTA 59.992 43.478 0.00 0.00 0.00 2.41
237 238 3.695830 ACGAATTGGCTCCTCTGTTAA 57.304 42.857 0.00 0.00 0.00 2.01
238 239 3.600388 ACGAATTGGCTCCTCTGTTAAG 58.400 45.455 0.00 0.00 0.00 1.85
239 240 2.939103 CGAATTGGCTCCTCTGTTAAGG 59.061 50.000 0.00 0.00 37.81 2.69
240 241 2.426842 ATTGGCTCCTCTGTTAAGGC 57.573 50.000 0.00 0.00 36.29 4.35
241 242 0.328258 TTGGCTCCTCTGTTAAGGCC 59.672 55.000 0.00 0.00 39.93 5.19
242 243 1.153349 GGCTCCTCTGTTAAGGCCG 60.153 63.158 0.00 0.00 36.29 6.13
243 244 1.614241 GGCTCCTCTGTTAAGGCCGA 61.614 60.000 0.00 0.00 36.29 5.54
244 245 0.466124 GCTCCTCTGTTAAGGCCGAT 59.534 55.000 0.00 0.00 36.29 4.18
245 246 1.539280 GCTCCTCTGTTAAGGCCGATC 60.539 57.143 0.00 0.00 36.29 3.69
246 247 1.069358 CTCCTCTGTTAAGGCCGATCC 59.931 57.143 0.00 0.00 36.29 3.36
247 248 0.830648 CCTCTGTTAAGGCCGATCCA 59.169 55.000 0.00 0.00 37.29 3.41
248 249 1.202580 CCTCTGTTAAGGCCGATCCAG 60.203 57.143 0.00 2.96 37.29 3.86
249 250 1.757118 CTCTGTTAAGGCCGATCCAGA 59.243 52.381 14.68 14.68 37.29 3.86
250 251 2.168521 CTCTGTTAAGGCCGATCCAGAA 59.831 50.000 15.76 4.57 37.29 3.02
251 252 2.771943 TCTGTTAAGGCCGATCCAGAAT 59.228 45.455 13.55 0.00 37.29 2.40
252 253 3.199946 TCTGTTAAGGCCGATCCAGAATT 59.800 43.478 13.55 0.00 37.29 2.17
253 254 3.278574 TGTTAAGGCCGATCCAGAATTG 58.721 45.455 0.00 0.00 37.29 2.32
254 255 3.054728 TGTTAAGGCCGATCCAGAATTGA 60.055 43.478 0.00 0.00 37.29 2.57
255 256 2.044123 AAGGCCGATCCAGAATTGAC 57.956 50.000 0.00 0.00 37.29 3.18
256 257 1.207791 AGGCCGATCCAGAATTGACT 58.792 50.000 0.00 0.00 37.29 3.41
257 258 1.139853 AGGCCGATCCAGAATTGACTC 59.860 52.381 0.00 0.00 37.29 3.36
258 259 1.134401 GGCCGATCCAGAATTGACTCA 60.134 52.381 0.00 0.00 34.01 3.41
259 260 2.486191 GGCCGATCCAGAATTGACTCAT 60.486 50.000 0.00 0.00 34.01 2.90
260 261 2.805099 GCCGATCCAGAATTGACTCATC 59.195 50.000 0.00 0.00 0.00 2.92
261 262 3.494048 GCCGATCCAGAATTGACTCATCT 60.494 47.826 0.00 0.00 0.00 2.90
262 263 4.056740 CCGATCCAGAATTGACTCATCTG 58.943 47.826 3.48 3.48 40.17 2.90
263 264 4.442612 CCGATCCAGAATTGACTCATCTGT 60.443 45.833 8.28 0.00 39.10 3.41
264 265 5.114780 CGATCCAGAATTGACTCATCTGTT 58.885 41.667 8.28 0.00 39.10 3.16
265 266 5.006455 CGATCCAGAATTGACTCATCTGTTG 59.994 44.000 8.28 0.00 39.10 3.33
266 267 5.233083 TCCAGAATTGACTCATCTGTTGT 57.767 39.130 8.28 0.00 39.10 3.32
267 268 5.240891 TCCAGAATTGACTCATCTGTTGTC 58.759 41.667 8.28 0.00 39.10 3.18
268 269 5.012458 TCCAGAATTGACTCATCTGTTGTCT 59.988 40.000 8.28 0.00 39.10 3.41
269 270 5.704515 CCAGAATTGACTCATCTGTTGTCTT 59.295 40.000 8.28 0.00 39.10 3.01
270 271 6.206243 CCAGAATTGACTCATCTGTTGTCTTT 59.794 38.462 8.28 0.00 39.10 2.52
271 272 7.296660 CAGAATTGACTCATCTGTTGTCTTTC 58.703 38.462 2.56 0.00 36.64 2.62
272 273 6.994496 AGAATTGACTCATCTGTTGTCTTTCA 59.006 34.615 0.00 0.00 31.98 2.69
273 274 6.798315 ATTGACTCATCTGTTGTCTTTCAG 57.202 37.500 0.00 0.00 0.00 3.02
274 275 5.282055 TGACTCATCTGTTGTCTTTCAGT 57.718 39.130 0.00 0.00 33.89 3.41
275 276 5.674525 TGACTCATCTGTTGTCTTTCAGTT 58.325 37.500 0.00 0.00 33.89 3.16
276 277 5.525012 TGACTCATCTGTTGTCTTTCAGTTG 59.475 40.000 0.00 0.00 34.58 3.16
277 278 4.274459 ACTCATCTGTTGTCTTTCAGTTGC 59.726 41.667 0.00 0.00 33.82 4.17
278 279 4.454678 TCATCTGTTGTCTTTCAGTTGCT 58.545 39.130 0.00 0.00 33.82 3.91
279 280 4.883585 TCATCTGTTGTCTTTCAGTTGCTT 59.116 37.500 0.00 0.00 33.82 3.91
280 281 4.621068 TCTGTTGTCTTTCAGTTGCTTG 57.379 40.909 0.00 0.00 33.89 4.01
281 282 4.260985 TCTGTTGTCTTTCAGTTGCTTGA 58.739 39.130 0.00 0.00 33.89 3.02
282 283 4.883585 TCTGTTGTCTTTCAGTTGCTTGAT 59.116 37.500 0.00 0.00 33.89 2.57
283 284 5.357878 TCTGTTGTCTTTCAGTTGCTTGATT 59.642 36.000 0.00 0.00 33.89 2.57
284 285 5.581605 TGTTGTCTTTCAGTTGCTTGATTC 58.418 37.500 0.00 0.00 0.00 2.52
285 286 5.357878 TGTTGTCTTTCAGTTGCTTGATTCT 59.642 36.000 0.00 0.00 0.00 2.40
286 287 5.428496 TGTCTTTCAGTTGCTTGATTCTG 57.572 39.130 0.00 0.00 0.00 3.02
287 288 4.225208 GTCTTTCAGTTGCTTGATTCTGC 58.775 43.478 0.00 0.00 0.00 4.26
288 289 4.023365 GTCTTTCAGTTGCTTGATTCTGCT 60.023 41.667 4.45 0.00 0.00 4.24
289 290 4.581824 TCTTTCAGTTGCTTGATTCTGCTT 59.418 37.500 4.45 0.00 0.00 3.91
290 291 4.924305 TTCAGTTGCTTGATTCTGCTTT 57.076 36.364 4.45 0.00 0.00 3.51
291 292 4.924305 TCAGTTGCTTGATTCTGCTTTT 57.076 36.364 4.45 0.00 0.00 2.27
292 293 6.389830 TTCAGTTGCTTGATTCTGCTTTTA 57.610 33.333 4.45 0.00 0.00 1.52
293 294 6.579666 TCAGTTGCTTGATTCTGCTTTTAT 57.420 33.333 4.45 0.00 0.00 1.40
294 295 6.985117 TCAGTTGCTTGATTCTGCTTTTATT 58.015 32.000 4.45 0.00 0.00 1.40
295 296 6.864685 TCAGTTGCTTGATTCTGCTTTTATTG 59.135 34.615 4.45 0.00 0.00 1.90
296 297 6.864685 CAGTTGCTTGATTCTGCTTTTATTGA 59.135 34.615 4.45 0.00 0.00 2.57
297 298 7.544566 CAGTTGCTTGATTCTGCTTTTATTGAT 59.455 33.333 4.45 0.00 0.00 2.57
298 299 8.742777 AGTTGCTTGATTCTGCTTTTATTGATA 58.257 29.630 4.45 0.00 0.00 2.15
299 300 8.801913 GTTGCTTGATTCTGCTTTTATTGATAC 58.198 33.333 4.45 0.00 0.00 2.24
300 301 8.054152 TGCTTGATTCTGCTTTTATTGATACA 57.946 30.769 4.45 0.00 0.00 2.29
301 302 8.186163 TGCTTGATTCTGCTTTTATTGATACAG 58.814 33.333 4.45 0.00 0.00 2.74
302 303 8.400947 GCTTGATTCTGCTTTTATTGATACAGA 58.599 33.333 0.00 0.00 32.62 3.41
305 306 9.399797 TGATTCTGCTTTTATTGATACAGATGT 57.600 29.630 0.00 0.00 34.40 3.06
308 309 8.565896 TCTGCTTTTATTGATACAGATGTTGT 57.434 30.769 0.00 0.00 43.96 3.32
309 310 9.013229 TCTGCTTTTATTGATACAGATGTTGTT 57.987 29.630 0.00 0.00 41.29 2.83
310 311 8.969121 TGCTTTTATTGATACAGATGTTGTTG 57.031 30.769 0.00 0.00 41.29 3.33
311 312 7.541783 TGCTTTTATTGATACAGATGTTGTTGC 59.458 33.333 0.00 0.00 41.29 4.17
312 313 7.756722 GCTTTTATTGATACAGATGTTGTTGCT 59.243 33.333 0.00 0.00 41.29 3.91
315 316 9.448438 TTTATTGATACAGATGTTGTTGCTACT 57.552 29.630 0.00 0.00 41.29 2.57
316 317 6.726258 TTGATACAGATGTTGTTGCTACTG 57.274 37.500 0.00 0.00 41.29 2.74
317 318 6.036577 TGATACAGATGTTGTTGCTACTGA 57.963 37.500 0.00 0.00 41.29 3.41
318 319 6.463360 TGATACAGATGTTGTTGCTACTGAA 58.537 36.000 0.00 0.00 41.29 3.02
319 320 6.368791 TGATACAGATGTTGTTGCTACTGAAC 59.631 38.462 0.00 0.00 41.29 3.18
320 321 4.450976 ACAGATGTTGTTGCTACTGAACA 58.549 39.130 6.65 6.65 36.31 3.18
321 322 4.881273 ACAGATGTTGTTGCTACTGAACAA 59.119 37.500 7.94 2.38 40.23 2.83
322 323 5.532406 ACAGATGTTGTTGCTACTGAACAAT 59.468 36.000 7.94 0.00 43.34 2.71
323 324 6.039717 ACAGATGTTGTTGCTACTGAACAATT 59.960 34.615 7.94 0.00 43.34 2.32
324 325 6.919662 CAGATGTTGTTGCTACTGAACAATTT 59.080 34.615 7.94 0.00 43.34 1.82
325 326 6.919662 AGATGTTGTTGCTACTGAACAATTTG 59.080 34.615 7.94 0.00 43.34 2.32
326 327 5.960113 TGTTGTTGCTACTGAACAATTTGT 58.040 33.333 0.00 0.00 43.34 2.83
327 328 7.089770 TGTTGTTGCTACTGAACAATTTGTA 57.910 32.000 1.76 0.00 43.34 2.41
328 329 7.711846 TGTTGTTGCTACTGAACAATTTGTAT 58.288 30.769 1.76 0.00 43.34 2.29
329 330 8.194104 TGTTGTTGCTACTGAACAATTTGTATT 58.806 29.630 1.76 0.00 43.34 1.89
330 331 8.479280 GTTGTTGCTACTGAACAATTTGTATTG 58.521 33.333 1.76 0.00 43.34 1.90
331 332 6.640499 TGTTGCTACTGAACAATTTGTATTGC 59.360 34.615 1.76 3.20 44.05 3.56
332 333 6.573664 TGCTACTGAACAATTTGTATTGCT 57.426 33.333 1.76 0.00 44.05 3.91
333 334 6.380995 TGCTACTGAACAATTTGTATTGCTG 58.619 36.000 1.76 0.90 44.05 4.41
334 335 6.016360 TGCTACTGAACAATTTGTATTGCTGT 60.016 34.615 1.76 6.08 44.05 4.40
335 336 6.306356 GCTACTGAACAATTTGTATTGCTGTG 59.694 38.462 1.76 1.76 44.05 3.66
336 337 6.389830 ACTGAACAATTTGTATTGCTGTGA 57.610 33.333 1.76 0.00 44.05 3.58
337 338 6.804677 ACTGAACAATTTGTATTGCTGTGAA 58.195 32.000 1.76 0.00 44.05 3.18
338 339 6.697019 ACTGAACAATTTGTATTGCTGTGAAC 59.303 34.615 1.76 0.00 44.05 3.18
339 340 5.685068 TGAACAATTTGTATTGCTGTGAACG 59.315 36.000 1.76 0.00 44.05 3.95
340 341 5.431420 ACAATTTGTATTGCTGTGAACGA 57.569 34.783 0.00 0.00 44.05 3.85
341 342 5.826586 ACAATTTGTATTGCTGTGAACGAA 58.173 33.333 0.00 0.00 44.05 3.85
342 343 6.446318 ACAATTTGTATTGCTGTGAACGAAT 58.554 32.000 0.00 0.00 44.05 3.34
343 344 6.922957 ACAATTTGTATTGCTGTGAACGAATT 59.077 30.769 0.00 0.00 44.05 2.17
344 345 8.079203 ACAATTTGTATTGCTGTGAACGAATTA 58.921 29.630 0.00 0.00 44.05 1.40
345 346 8.577939 CAATTTGTATTGCTGTGAACGAATTAG 58.422 33.333 0.00 0.00 35.27 1.73
346 347 5.216566 TGTATTGCTGTGAACGAATTAGC 57.783 39.130 0.00 0.00 35.06 3.09
347 348 4.935205 TGTATTGCTGTGAACGAATTAGCT 59.065 37.500 0.00 0.00 35.50 3.32
348 349 4.606457 ATTGCTGTGAACGAATTAGCTC 57.394 40.909 0.00 0.00 35.50 4.09
349 350 2.346803 TGCTGTGAACGAATTAGCTCC 58.653 47.619 0.00 0.00 35.50 4.70
350 351 2.028112 TGCTGTGAACGAATTAGCTCCT 60.028 45.455 0.00 0.00 35.50 3.69
351 352 2.605366 GCTGTGAACGAATTAGCTCCTC 59.395 50.000 0.00 0.00 0.00 3.71
352 353 3.677424 GCTGTGAACGAATTAGCTCCTCT 60.677 47.826 0.00 0.00 0.00 3.69
353 354 3.849911 TGTGAACGAATTAGCTCCTCTG 58.150 45.455 0.00 0.00 0.00 3.35
354 355 3.258372 TGTGAACGAATTAGCTCCTCTGT 59.742 43.478 0.00 0.00 0.00 3.41
355 356 4.246458 GTGAACGAATTAGCTCCTCTGTT 58.754 43.478 0.00 0.00 0.00 3.16
356 357 5.047590 TGTGAACGAATTAGCTCCTCTGTTA 60.048 40.000 0.00 0.00 0.00 2.41
357 358 5.517054 GTGAACGAATTAGCTCCTCTGTTAG 59.483 44.000 0.00 0.00 0.00 2.34
359 360 3.385111 ACGAATTAGCTCCTCTGTTAGGG 59.615 47.826 0.00 0.00 46.55 3.53
360 361 3.385111 CGAATTAGCTCCTCTGTTAGGGT 59.615 47.826 0.00 0.00 46.55 4.34
361 362 4.698575 GAATTAGCTCCTCTGTTAGGGTG 58.301 47.826 0.00 0.00 46.55 4.61
362 363 3.468071 TTAGCTCCTCTGTTAGGGTGA 57.532 47.619 0.00 0.00 46.55 4.02
363 364 2.327325 AGCTCCTCTGTTAGGGTGAA 57.673 50.000 0.00 0.00 46.55 3.18
364 365 2.839228 AGCTCCTCTGTTAGGGTGAAT 58.161 47.619 0.00 0.00 46.55 2.57
365 366 3.185455 AGCTCCTCTGTTAGGGTGAATT 58.815 45.455 0.00 0.00 46.55 2.17
366 367 3.589288 AGCTCCTCTGTTAGGGTGAATTT 59.411 43.478 0.00 0.00 46.55 1.82
367 368 4.043435 AGCTCCTCTGTTAGGGTGAATTTT 59.957 41.667 0.00 0.00 46.55 1.82
368 369 4.767409 GCTCCTCTGTTAGGGTGAATTTTT 59.233 41.667 0.00 0.00 46.55 1.94
393 394 9.467796 TTTTTGAACACCCAATTTTAAATTCCT 57.532 25.926 0.00 0.00 0.00 3.36
394 395 8.443953 TTTGAACACCCAATTTTAAATTCCTG 57.556 30.769 0.00 0.00 0.00 3.86
395 396 6.529220 TGAACACCCAATTTTAAATTCCTGG 58.471 36.000 0.00 4.65 0.00 4.45
396 397 6.327626 TGAACACCCAATTTTAAATTCCTGGA 59.672 34.615 13.62 0.00 0.00 3.86
397 398 6.950860 ACACCCAATTTTAAATTCCTGGAT 57.049 33.333 13.62 0.00 0.00 3.41
398 399 6.946340 ACACCCAATTTTAAATTCCTGGATC 58.054 36.000 13.62 0.00 0.00 3.36
399 400 6.070251 ACACCCAATTTTAAATTCCTGGATCC 60.070 38.462 4.20 4.20 0.00 3.36
400 401 5.128663 ACCCAATTTTAAATTCCTGGATCCG 59.871 40.000 7.39 1.76 0.00 4.18
401 402 5.049828 CCAATTTTAAATTCCTGGATCCGC 58.950 41.667 7.39 0.00 0.00 5.54
402 403 4.937201 ATTTTAAATTCCTGGATCCGCC 57.063 40.909 7.39 0.00 37.10 6.13
403 404 3.374042 TTTAAATTCCTGGATCCGCCA 57.626 42.857 7.39 0.00 46.96 5.69
404 405 2.341846 TAAATTCCTGGATCCGCCAC 57.658 50.000 7.39 0.00 43.33 5.01
428 429 4.256920 GGCGTGCATGGATCTATAATCTT 58.743 43.478 8.27 0.00 0.00 2.40
500 501 4.814294 CAGCGGTGGCGGACCTAC 62.814 72.222 6.74 0.00 43.55 3.18
509 510 0.249398 GGCGGACCTACATGTTGACT 59.751 55.000 2.30 0.00 0.00 3.41
511 512 2.481449 GGCGGACCTACATGTTGACTAG 60.481 54.545 2.30 0.00 0.00 2.57
643 658 6.018016 ACAAGATACTTGTTTGGCATTTTTGC 60.018 34.615 10.73 0.00 0.00 3.68
650 665 1.722034 TTGGCATTTTTGCAGGGGTA 58.278 45.000 0.00 0.00 36.33 3.69
654 669 2.223711 GGCATTTTTGCAGGGGTATACG 60.224 50.000 0.00 0.00 36.33 3.06
657 672 4.496840 GCATTTTTGCAGGGGTATACGTAC 60.497 45.833 0.00 0.00 34.41 3.67
658 673 2.582728 TTTGCAGGGGTATACGTACG 57.417 50.000 15.01 15.01 0.00 3.67
659 674 1.473258 TTGCAGGGGTATACGTACGT 58.527 50.000 25.98 25.98 0.00 3.57
660 675 2.340210 TGCAGGGGTATACGTACGTA 57.660 50.000 28.62 28.62 34.87 3.57
690 705 3.619483 CACAAAGACCAAGTACGTTGACA 59.381 43.478 0.00 0.00 38.60 3.58
695 710 4.957296 AGACCAAGTACGTTGACAAAGAT 58.043 39.130 8.17 0.00 38.60 2.40
703 718 6.161381 AGTACGTTGACAAAGATTTATCCGT 58.839 36.000 8.17 4.29 0.00 4.69
704 719 5.277601 ACGTTGACAAAGATTTATCCGTG 57.722 39.130 8.17 0.00 0.00 4.94
746 761 2.202932 CACGAAGGGCCCAGATCG 60.203 66.667 31.20 31.20 40.90 3.69
787 802 2.348888 ACCCCGACCGTCAGATCAC 61.349 63.158 0.00 0.00 0.00 3.06
956 973 1.584724 CACTACCCTCACTTCCCCAT 58.415 55.000 0.00 0.00 0.00 4.00
974 991 3.461061 CCATCGGCACTATATATGGCAG 58.539 50.000 14.52 8.61 42.55 4.85
1042 1064 0.252558 TCCTACTTGTCCACCTCCCC 60.253 60.000 0.00 0.00 0.00 4.81
1838 1867 4.985538 TCCTCTCTAGGTTTCGATTGTC 57.014 45.455 0.00 0.00 44.09 3.18
1883 1916 2.412937 CCGGATTGGAATTGCGGC 59.587 61.111 0.00 0.00 41.20 6.53
1963 1996 4.021192 ACCAAATTTGCTTACCTGTCCATG 60.021 41.667 12.92 0.00 0.00 3.66
2099 2132 9.967245 TTTTCAACTTCGTATCGAAATATCTTG 57.033 29.630 6.10 3.92 45.23 3.02
2106 2156 5.975344 TCGTATCGAAATATCTTGGTGTGAC 59.025 40.000 0.00 0.00 31.06 3.67
2107 2157 5.746721 CGTATCGAAATATCTTGGTGTGACA 59.253 40.000 0.00 0.00 0.00 3.58
2108 2158 6.074835 CGTATCGAAATATCTTGGTGTGACAG 60.075 42.308 0.00 0.00 0.00 3.51
2109 2159 5.147330 TCGAAATATCTTGGTGTGACAGT 57.853 39.130 0.00 0.00 0.00 3.55
2110 2160 4.929211 TCGAAATATCTTGGTGTGACAGTG 59.071 41.667 0.00 0.00 0.00 3.66
2111 2161 4.929211 CGAAATATCTTGGTGTGACAGTGA 59.071 41.667 0.00 0.00 0.00 3.41
2112 2162 5.408299 CGAAATATCTTGGTGTGACAGTGAA 59.592 40.000 0.00 0.00 0.00 3.18
2113 2163 6.073276 CGAAATATCTTGGTGTGACAGTGAAA 60.073 38.462 0.00 0.00 0.00 2.69
2114 2164 6.560253 AATATCTTGGTGTGACAGTGAAAC 57.440 37.500 0.00 0.00 0.00 2.78
2115 2165 2.276201 TCTTGGTGTGACAGTGAAACG 58.724 47.619 0.00 0.00 45.86 3.60
2116 2166 0.730265 TTGGTGTGACAGTGAAACGC 59.270 50.000 0.00 0.86 45.86 4.84
2117 2167 0.107897 TGGTGTGACAGTGAAACGCT 60.108 50.000 0.00 0.00 45.86 5.07
2118 2168 1.014352 GGTGTGACAGTGAAACGCTT 58.986 50.000 0.00 0.00 45.86 4.68
2119 2169 1.268032 GGTGTGACAGTGAAACGCTTG 60.268 52.381 0.00 0.00 45.86 4.01
2120 2170 1.663643 GTGTGACAGTGAAACGCTTGA 59.336 47.619 0.00 0.00 45.86 3.02
2133 2183 8.617809 AGTGAAACGCTTGAAAGAAAATTACTA 58.382 29.630 0.00 0.00 45.86 1.82
2231 2284 2.225019 CCTCACTAACACTGCAAGCAAG 59.775 50.000 0.00 0.00 37.60 4.01
2232 2285 1.603802 TCACTAACACTGCAAGCAAGC 59.396 47.619 0.00 0.00 37.60 4.01
2233 2286 1.334556 CACTAACACTGCAAGCAAGCA 59.665 47.619 3.03 3.03 43.35 3.91
2234 2287 2.023673 ACTAACACTGCAAGCAAGCAA 58.976 42.857 4.63 0.00 45.13 3.91
2235 2288 2.624838 ACTAACACTGCAAGCAAGCAAT 59.375 40.909 4.63 0.00 45.13 3.56
2236 2289 2.607631 AACACTGCAAGCAAGCAATT 57.392 40.000 4.63 0.00 45.13 2.32
2237 2290 2.144482 ACACTGCAAGCAAGCAATTC 57.856 45.000 4.63 0.00 45.13 2.17
2238 2291 1.409790 ACACTGCAAGCAAGCAATTCA 59.590 42.857 4.63 0.00 45.13 2.57
2239 2292 2.159071 ACACTGCAAGCAAGCAATTCAA 60.159 40.909 4.63 0.00 45.13 2.69
2240 2293 2.867368 CACTGCAAGCAAGCAATTCAAA 59.133 40.909 4.63 0.00 45.13 2.69
2241 2294 2.867975 ACTGCAAGCAAGCAATTCAAAC 59.132 40.909 4.63 0.00 45.13 2.93
2242 2295 3.128349 CTGCAAGCAAGCAATTCAAACT 58.872 40.909 4.63 0.00 45.13 2.66
2243 2296 4.202141 ACTGCAAGCAAGCAATTCAAACTA 60.202 37.500 4.63 0.00 45.13 2.24
2244 2297 4.691175 TGCAAGCAAGCAATTCAAACTAA 58.309 34.783 0.17 0.00 42.46 2.24
2245 2298 5.299148 TGCAAGCAAGCAATTCAAACTAAT 58.701 33.333 0.17 0.00 42.46 1.73
2246 2299 5.406175 TGCAAGCAAGCAATTCAAACTAATC 59.594 36.000 0.17 0.00 42.46 1.75
2247 2300 5.163923 GCAAGCAAGCAATTCAAACTAATCC 60.164 40.000 0.00 0.00 0.00 3.01
2248 2301 5.726980 AGCAAGCAATTCAAACTAATCCA 57.273 34.783 0.00 0.00 0.00 3.41
2249 2302 6.100404 AGCAAGCAATTCAAACTAATCCAA 57.900 33.333 0.00 0.00 0.00 3.53
2250 2303 6.523840 AGCAAGCAATTCAAACTAATCCAAA 58.476 32.000 0.00 0.00 0.00 3.28
2251 2304 6.991531 AGCAAGCAATTCAAACTAATCCAAAA 59.008 30.769 0.00 0.00 0.00 2.44
2302 2355 1.065491 GTGCATACATGGACAGGGACA 60.065 52.381 8.76 0.00 46.68 4.02
2303 2356 1.845791 TGCATACATGGACAGGGACAT 59.154 47.619 0.00 0.00 0.00 3.06
2309 2362 3.330198 ACATGGACAGGGACATATGGAT 58.670 45.455 7.80 0.00 0.00 3.41
2312 2365 1.701847 GGACAGGGACATATGGATGCT 59.298 52.381 7.80 0.00 36.43 3.79
2335 2388 3.691609 GCTTTGACCTCTCAAACATAGGG 59.308 47.826 0.00 0.00 40.76 3.53
2407 2460 5.794687 TTCGACATGTAACCATCATCAAC 57.205 39.130 0.00 0.00 0.00 3.18
2418 2471 5.801350 ACCATCATCAACACTCAATTACG 57.199 39.130 0.00 0.00 0.00 3.18
2419 2472 4.094887 ACCATCATCAACACTCAATTACGC 59.905 41.667 0.00 0.00 0.00 4.42
2420 2473 4.333649 CCATCATCAACACTCAATTACGCT 59.666 41.667 0.00 0.00 0.00 5.07
2421 2474 5.163723 CCATCATCAACACTCAATTACGCTT 60.164 40.000 0.00 0.00 0.00 4.68
2513 2566 0.038526 AACCGAAGTCTCGTCGCAAT 60.039 50.000 0.17 0.00 43.87 3.56
2514 2567 0.038526 ACCGAAGTCTCGTCGCAATT 60.039 50.000 0.17 0.00 43.87 2.32
2515 2568 1.068474 CCGAAGTCTCGTCGCAATTT 58.932 50.000 0.17 0.00 43.87 1.82
2640 2704 1.075450 GGAGGGTGGTCGAGGGTAT 60.075 63.158 0.00 0.00 0.00 2.73
2641 2705 0.186873 GGAGGGTGGTCGAGGGTATA 59.813 60.000 0.00 0.00 0.00 1.47
2733 2797 4.213270 TCCGTCTTAGCTTGTTGTTGAATG 59.787 41.667 0.00 0.00 0.00 2.67
2789 2859 1.825474 ACGACCTATGACCAGGACTTG 59.175 52.381 0.00 0.00 39.18 3.16
2859 2935 1.369209 GACATGTGTGTGCGTGTGC 60.369 57.895 1.15 0.00 39.09 4.57
2860 2936 1.775039 GACATGTGTGTGCGTGTGCT 61.775 55.000 1.15 0.00 43.34 4.40
2924 3008 5.408604 AGGTTGATCAACTAACTAAGCAACG 59.591 40.000 31.81 0.00 40.94 4.10
3003 3087 3.936203 GGGTGTCGTGTCTGCCCA 61.936 66.667 0.00 0.00 39.13 5.36
3203 3299 3.470888 CCCCTCCGTGCTACCAGG 61.471 72.222 0.00 0.00 0.00 4.45
3269 3370 3.633951 GCACTTTTGCCTGCTTGC 58.366 55.556 0.00 0.00 43.66 4.01
3288 3389 7.535139 TGCTTGCTTGGTTCATAACTTTATAC 58.465 34.615 0.00 0.00 0.00 1.47
3289 3390 7.393234 TGCTTGCTTGGTTCATAACTTTATACT 59.607 33.333 0.00 0.00 0.00 2.12
3290 3391 7.910683 GCTTGCTTGGTTCATAACTTTATACTC 59.089 37.037 0.00 0.00 0.00 2.59
3291 3392 7.859325 TGCTTGGTTCATAACTTTATACTCC 57.141 36.000 0.00 0.00 0.00 3.85
3292 3393 6.826741 TGCTTGGTTCATAACTTTATACTCCC 59.173 38.462 0.00 0.00 0.00 4.30
3293 3394 7.054751 GCTTGGTTCATAACTTTATACTCCCT 58.945 38.462 0.00 0.00 0.00 4.20
3294 3395 7.226918 GCTTGGTTCATAACTTTATACTCCCTC 59.773 40.741 0.00 0.00 0.00 4.30
3295 3396 7.133133 TGGTTCATAACTTTATACTCCCTCC 57.867 40.000 0.00 0.00 0.00 4.30
3296 3397 6.183360 TGGTTCATAACTTTATACTCCCTCCG 60.183 42.308 0.00 0.00 0.00 4.63
3297 3398 6.183360 GGTTCATAACTTTATACTCCCTCCGT 60.183 42.308 0.00 0.00 0.00 4.69
3298 3399 6.645790 TCATAACTTTATACTCCCTCCGTC 57.354 41.667 0.00 0.00 0.00 4.79
3300 3401 3.684408 ACTTTATACTCCCTCCGTCCT 57.316 47.619 0.00 0.00 0.00 3.85
3301 3402 4.803329 ACTTTATACTCCCTCCGTCCTA 57.197 45.455 0.00 0.00 0.00 2.94
3302 3403 5.134725 ACTTTATACTCCCTCCGTCCTAA 57.865 43.478 0.00 0.00 0.00 2.69
3303 3404 5.522641 ACTTTATACTCCCTCCGTCCTAAA 58.477 41.667 0.00 0.00 0.00 1.85
3304 3405 5.960202 ACTTTATACTCCCTCCGTCCTAAAA 59.040 40.000 0.00 0.00 0.00 1.52
3305 3406 5.859205 TTATACTCCCTCCGTCCTAAAAC 57.141 43.478 0.00 0.00 0.00 2.43
3308 3409 2.707257 ACTCCCTCCGTCCTAAAACAAA 59.293 45.455 0.00 0.00 0.00 2.83
3310 3411 1.802365 CCCTCCGTCCTAAAACAAACG 59.198 52.381 0.00 0.00 35.01 3.60
3312 3413 2.477754 CCTCCGTCCTAAAACAAACGTC 59.522 50.000 0.00 0.00 33.45 4.34
3313 3414 3.387397 CTCCGTCCTAAAACAAACGTCT 58.613 45.455 0.00 0.00 33.45 4.18
3314 3415 3.795877 TCCGTCCTAAAACAAACGTCTT 58.204 40.909 0.00 0.00 33.45 3.01
3315 3416 4.942852 TCCGTCCTAAAACAAACGTCTTA 58.057 39.130 0.00 0.00 33.45 2.10
3316 3417 5.355596 TCCGTCCTAAAACAAACGTCTTAA 58.644 37.500 0.00 0.00 33.45 1.85
3317 3418 5.234116 TCCGTCCTAAAACAAACGTCTTAAC 59.766 40.000 0.00 0.00 33.45 2.01
3319 3420 6.350200 CGTCCTAAAACAAACGTCTTAACTC 58.650 40.000 0.00 0.00 0.00 3.01
3320 3421 6.199719 CGTCCTAAAACAAACGTCTTAACTCT 59.800 38.462 0.00 0.00 0.00 3.24
3321 3422 7.379529 CGTCCTAAAACAAACGTCTTAACTCTA 59.620 37.037 0.00 0.00 0.00 2.43
3323 3424 9.768662 TCCTAAAACAAACGTCTTAACTCTAAT 57.231 29.630 0.00 0.00 0.00 1.73
3372 3521 9.353999 ACAAAGTTGAGACACTTATTTTGAAAC 57.646 29.630 0.00 0.00 35.87 2.78
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 9.119418 TGTTTTTCACATAAGTCATTGAAGAGA 57.881 29.630 0.00 0.00 29.96 3.10
1 2 9.734620 TTGTTTTTCACATAAGTCATTGAAGAG 57.265 29.630 0.00 0.00 34.43 2.85
2 3 9.734620 CTTGTTTTTCACATAAGTCATTGAAGA 57.265 29.630 0.00 0.00 34.43 2.87
3 4 8.482429 GCTTGTTTTTCACATAAGTCATTGAAG 58.518 33.333 0.00 0.00 34.43 3.02
4 5 8.196771 AGCTTGTTTTTCACATAAGTCATTGAA 58.803 29.630 0.00 0.00 34.43 2.69
5 6 7.715657 AGCTTGTTTTTCACATAAGTCATTGA 58.284 30.769 0.00 0.00 34.43 2.57
6 7 7.935338 AGCTTGTTTTTCACATAAGTCATTG 57.065 32.000 0.00 0.00 34.43 2.82
7 8 8.629158 TGTAGCTTGTTTTTCACATAAGTCATT 58.371 29.630 0.00 0.00 34.43 2.57
8 9 8.165239 TGTAGCTTGTTTTTCACATAAGTCAT 57.835 30.769 0.00 0.00 34.43 3.06
9 10 7.497579 TCTGTAGCTTGTTTTTCACATAAGTCA 59.502 33.333 0.00 0.00 34.43 3.41
10 11 7.861630 TCTGTAGCTTGTTTTTCACATAAGTC 58.138 34.615 0.00 0.00 34.43 3.01
11 12 7.801716 TCTGTAGCTTGTTTTTCACATAAGT 57.198 32.000 0.00 0.00 34.43 2.24
18 19 9.474920 CCATTTTATTCTGTAGCTTGTTTTTCA 57.525 29.630 0.00 0.00 0.00 2.69
19 20 8.925700 CCCATTTTATTCTGTAGCTTGTTTTTC 58.074 33.333 0.00 0.00 0.00 2.29
20 21 7.877612 CCCCATTTTATTCTGTAGCTTGTTTTT 59.122 33.333 0.00 0.00 0.00 1.94
21 22 7.234577 TCCCCATTTTATTCTGTAGCTTGTTTT 59.765 33.333 0.00 0.00 0.00 2.43
22 23 6.723977 TCCCCATTTTATTCTGTAGCTTGTTT 59.276 34.615 0.00 0.00 0.00 2.83
23 24 6.252995 TCCCCATTTTATTCTGTAGCTTGTT 58.747 36.000 0.00 0.00 0.00 2.83
24 25 5.826643 TCCCCATTTTATTCTGTAGCTTGT 58.173 37.500 0.00 0.00 0.00 3.16
25 26 6.773976 TTCCCCATTTTATTCTGTAGCTTG 57.226 37.500 0.00 0.00 0.00 4.01
26 27 7.125391 TGATTCCCCATTTTATTCTGTAGCTT 58.875 34.615 0.00 0.00 0.00 3.74
27 28 6.672593 TGATTCCCCATTTTATTCTGTAGCT 58.327 36.000 0.00 0.00 0.00 3.32
28 29 6.959639 TGATTCCCCATTTTATTCTGTAGC 57.040 37.500 0.00 0.00 0.00 3.58
29 30 8.525290 AGTTGATTCCCCATTTTATTCTGTAG 57.475 34.615 0.00 0.00 0.00 2.74
30 31 8.336235 AGAGTTGATTCCCCATTTTATTCTGTA 58.664 33.333 0.00 0.00 0.00 2.74
31 32 7.184862 AGAGTTGATTCCCCATTTTATTCTGT 58.815 34.615 0.00 0.00 0.00 3.41
32 33 7.651027 AGAGTTGATTCCCCATTTTATTCTG 57.349 36.000 0.00 0.00 0.00 3.02
33 34 7.895429 TCAAGAGTTGATTCCCCATTTTATTCT 59.105 33.333 0.00 0.00 34.08 2.40
34 35 8.066612 TCAAGAGTTGATTCCCCATTTTATTC 57.933 34.615 0.00 0.00 34.08 1.75
35 36 8.434589 TTCAAGAGTTGATTCCCCATTTTATT 57.565 30.769 0.00 0.00 39.84 1.40
36 37 8.480501 CATTCAAGAGTTGATTCCCCATTTTAT 58.519 33.333 0.00 0.00 39.84 1.40
37 38 7.673504 TCATTCAAGAGTTGATTCCCCATTTTA 59.326 33.333 0.00 0.00 39.84 1.52
38 39 6.497954 TCATTCAAGAGTTGATTCCCCATTTT 59.502 34.615 0.00 0.00 39.84 1.82
39 40 6.018469 TCATTCAAGAGTTGATTCCCCATTT 58.982 36.000 0.00 0.00 39.84 2.32
40 41 5.582953 TCATTCAAGAGTTGATTCCCCATT 58.417 37.500 0.00 0.00 39.84 3.16
41 42 5.197224 TCATTCAAGAGTTGATTCCCCAT 57.803 39.130 0.00 0.00 39.84 4.00
42 43 4.656100 TCATTCAAGAGTTGATTCCCCA 57.344 40.909 0.00 0.00 39.84 4.96
43 44 5.680665 GCAATCATTCAAGAGTTGATTCCCC 60.681 44.000 7.12 0.00 37.86 4.81
44 45 5.126707 AGCAATCATTCAAGAGTTGATTCCC 59.873 40.000 7.12 3.85 37.86 3.97
45 46 6.205101 AGCAATCATTCAAGAGTTGATTCC 57.795 37.500 7.12 1.25 37.86 3.01
46 47 6.530534 CCAAGCAATCATTCAAGAGTTGATTC 59.469 38.462 7.12 4.61 37.86 2.52
47 48 6.014840 ACCAAGCAATCATTCAAGAGTTGATT 60.015 34.615 0.00 5.16 39.92 2.57
48 49 5.479375 ACCAAGCAATCATTCAAGAGTTGAT 59.521 36.000 0.00 0.00 39.84 2.57
49 50 4.828939 ACCAAGCAATCATTCAAGAGTTGA 59.171 37.500 0.00 0.00 38.04 3.18
50 51 5.130292 ACCAAGCAATCATTCAAGAGTTG 57.870 39.130 0.00 0.00 0.00 3.16
51 52 5.796424 AACCAAGCAATCATTCAAGAGTT 57.204 34.783 0.00 0.00 0.00 3.01
52 53 5.769662 TGTAACCAAGCAATCATTCAAGAGT 59.230 36.000 0.00 0.00 0.00 3.24
53 54 6.258230 TGTAACCAAGCAATCATTCAAGAG 57.742 37.500 0.00 0.00 0.00 2.85
54 55 6.839124 ATGTAACCAAGCAATCATTCAAGA 57.161 33.333 0.00 0.00 0.00 3.02
55 56 7.894376 AAATGTAACCAAGCAATCATTCAAG 57.106 32.000 0.00 0.00 0.00 3.02
56 57 9.941325 AATAAATGTAACCAAGCAATCATTCAA 57.059 25.926 0.00 0.00 0.00 2.69
57 58 9.368674 CAATAAATGTAACCAAGCAATCATTCA 57.631 29.630 0.00 0.00 0.00 2.57
58 59 9.585099 TCAATAAATGTAACCAAGCAATCATTC 57.415 29.630 0.00 0.00 0.00 2.67
59 60 9.590451 CTCAATAAATGTAACCAAGCAATCATT 57.410 29.630 0.00 0.00 0.00 2.57
60 61 8.970020 TCTCAATAAATGTAACCAAGCAATCAT 58.030 29.630 0.00 0.00 0.00 2.45
61 62 8.347004 TCTCAATAAATGTAACCAAGCAATCA 57.653 30.769 0.00 0.00 0.00 2.57
62 63 7.917505 CCTCTCAATAAATGTAACCAAGCAATC 59.082 37.037 0.00 0.00 0.00 2.67
63 64 7.147846 CCCTCTCAATAAATGTAACCAAGCAAT 60.148 37.037 0.00 0.00 0.00 3.56
64 65 6.152661 CCCTCTCAATAAATGTAACCAAGCAA 59.847 38.462 0.00 0.00 0.00 3.91
65 66 5.652014 CCCTCTCAATAAATGTAACCAAGCA 59.348 40.000 0.00 0.00 0.00 3.91
66 67 5.885912 TCCCTCTCAATAAATGTAACCAAGC 59.114 40.000 0.00 0.00 0.00 4.01
67 68 7.938140 TTCCCTCTCAATAAATGTAACCAAG 57.062 36.000 0.00 0.00 0.00 3.61
68 69 8.893563 AATTCCCTCTCAATAAATGTAACCAA 57.106 30.769 0.00 0.00 0.00 3.67
69 70 8.336235 AGAATTCCCTCTCAATAAATGTAACCA 58.664 33.333 0.65 0.00 0.00 3.67
70 71 8.753497 AGAATTCCCTCTCAATAAATGTAACC 57.247 34.615 0.65 0.00 0.00 2.85
96 97 7.111247 ACAACATCATCCTTCACTTCAAAAA 57.889 32.000 0.00 0.00 0.00 1.94
97 98 6.320926 TGACAACATCATCCTTCACTTCAAAA 59.679 34.615 0.00 0.00 29.99 2.44
98 99 5.827267 TGACAACATCATCCTTCACTTCAAA 59.173 36.000 0.00 0.00 29.99 2.69
99 100 5.375773 TGACAACATCATCCTTCACTTCAA 58.624 37.500 0.00 0.00 29.99 2.69
100 101 4.971939 TGACAACATCATCCTTCACTTCA 58.028 39.130 0.00 0.00 29.99 3.02
112 113 6.146601 TGAAAGCAAGAAATGACAACATCA 57.853 33.333 0.00 0.00 43.13 3.07
130 131 2.287788 ACGCTTTGTCATGGCTTGAAAG 60.288 45.455 4.47 7.42 35.70 2.62
131 132 1.680735 ACGCTTTGTCATGGCTTGAAA 59.319 42.857 4.47 0.00 35.70 2.69
132 133 1.317613 ACGCTTTGTCATGGCTTGAA 58.682 45.000 4.47 0.00 35.70 2.69
133 134 2.177394 TACGCTTTGTCATGGCTTGA 57.823 45.000 0.00 0.00 0.00 3.02
134 135 2.478370 CCATACGCTTTGTCATGGCTTG 60.478 50.000 0.00 0.00 32.12 4.01
135 136 1.745087 CCATACGCTTTGTCATGGCTT 59.255 47.619 0.00 0.00 32.12 4.35
136 137 1.340017 ACCATACGCTTTGTCATGGCT 60.340 47.619 0.00 0.00 41.41 4.75
137 138 1.064060 GACCATACGCTTTGTCATGGC 59.936 52.381 0.00 0.00 41.41 4.40
138 139 1.327460 CGACCATACGCTTTGTCATGG 59.673 52.381 0.00 0.00 43.02 3.66
139 140 2.267426 TCGACCATACGCTTTGTCATG 58.733 47.619 0.00 0.00 0.00 3.07
140 141 2.094182 ACTCGACCATACGCTTTGTCAT 60.094 45.455 0.00 0.00 0.00 3.06
141 142 1.271379 ACTCGACCATACGCTTTGTCA 59.729 47.619 0.00 0.00 0.00 3.58
142 143 1.992170 ACTCGACCATACGCTTTGTC 58.008 50.000 0.00 0.00 0.00 3.18
143 144 2.066262 CAACTCGACCATACGCTTTGT 58.934 47.619 0.00 0.00 0.00 2.83
144 145 2.066262 ACAACTCGACCATACGCTTTG 58.934 47.619 0.00 0.00 33.92 2.77
145 146 2.450609 ACAACTCGACCATACGCTTT 57.549 45.000 0.00 0.00 0.00 3.51
146 147 3.581024 TTACAACTCGACCATACGCTT 57.419 42.857 0.00 0.00 0.00 4.68
147 148 3.795623 ATTACAACTCGACCATACGCT 57.204 42.857 0.00 0.00 0.00 5.07
148 149 4.852609 AAATTACAACTCGACCATACGC 57.147 40.909 0.00 0.00 0.00 4.42
149 150 6.642683 AGAAAATTACAACTCGACCATACG 57.357 37.500 0.00 0.00 0.00 3.06
182 183 9.461312 ACAGCAATACAGATTAAGGAAATTACA 57.539 29.630 0.00 0.00 0.00 2.41
185 186 8.806146 ACAACAGCAATACAGATTAAGGAAATT 58.194 29.630 0.00 0.00 0.00 1.82
186 187 8.353423 ACAACAGCAATACAGATTAAGGAAAT 57.647 30.769 0.00 0.00 0.00 2.17
187 188 7.759489 ACAACAGCAATACAGATTAAGGAAA 57.241 32.000 0.00 0.00 0.00 3.13
188 189 7.230510 ACAACAACAGCAATACAGATTAAGGAA 59.769 33.333 0.00 0.00 0.00 3.36
189 190 6.714810 ACAACAACAGCAATACAGATTAAGGA 59.285 34.615 0.00 0.00 0.00 3.36
190 191 6.803320 CACAACAACAGCAATACAGATTAAGG 59.197 38.462 0.00 0.00 0.00 2.69
191 192 7.584108 TCACAACAACAGCAATACAGATTAAG 58.416 34.615 0.00 0.00 0.00 1.85
192 193 7.503521 TCACAACAACAGCAATACAGATTAA 57.496 32.000 0.00 0.00 0.00 1.40
193 194 7.359595 GTTCACAACAACAGCAATACAGATTA 58.640 34.615 0.00 0.00 0.00 1.75
194 195 6.208644 GTTCACAACAACAGCAATACAGATT 58.791 36.000 0.00 0.00 0.00 2.40
195 196 5.560760 CGTTCACAACAACAGCAATACAGAT 60.561 40.000 0.00 0.00 0.00 2.90
196 197 4.260579 CGTTCACAACAACAGCAATACAGA 60.261 41.667 0.00 0.00 0.00 3.41
197 198 3.968096 CGTTCACAACAACAGCAATACAG 59.032 43.478 0.00 0.00 0.00 2.74
198 199 3.623510 TCGTTCACAACAACAGCAATACA 59.376 39.130 0.00 0.00 0.00 2.29
199 200 4.203950 TCGTTCACAACAACAGCAATAC 57.796 40.909 0.00 0.00 0.00 1.89
200 201 4.884458 TTCGTTCACAACAACAGCAATA 57.116 36.364 0.00 0.00 0.00 1.90
201 202 3.773860 TTCGTTCACAACAACAGCAAT 57.226 38.095 0.00 0.00 0.00 3.56
202 203 3.773860 ATTCGTTCACAACAACAGCAA 57.226 38.095 0.00 0.00 0.00 3.91
203 204 3.433709 CAATTCGTTCACAACAACAGCA 58.566 40.909 0.00 0.00 0.00 4.41
204 205 2.788786 CCAATTCGTTCACAACAACAGC 59.211 45.455 0.00 0.00 0.00 4.40
205 206 2.788786 GCCAATTCGTTCACAACAACAG 59.211 45.455 0.00 0.00 0.00 3.16
206 207 2.425312 AGCCAATTCGTTCACAACAACA 59.575 40.909 0.00 0.00 0.00 3.33
207 208 3.042887 GAGCCAATTCGTTCACAACAAC 58.957 45.455 0.00 0.00 0.00 3.32
208 209 2.034053 GGAGCCAATTCGTTCACAACAA 59.966 45.455 0.00 0.00 0.00 2.83
209 210 1.606668 GGAGCCAATTCGTTCACAACA 59.393 47.619 0.00 0.00 0.00 3.33
210 211 1.880027 AGGAGCCAATTCGTTCACAAC 59.120 47.619 0.00 0.00 0.00 3.32
211 212 2.151202 GAGGAGCCAATTCGTTCACAA 58.849 47.619 0.00 0.00 0.00 3.33
212 213 1.347707 AGAGGAGCCAATTCGTTCACA 59.652 47.619 0.00 0.00 0.00 3.58
213 214 1.734465 CAGAGGAGCCAATTCGTTCAC 59.266 52.381 0.00 0.00 0.00 3.18
214 215 1.347707 ACAGAGGAGCCAATTCGTTCA 59.652 47.619 0.00 0.00 0.00 3.18
215 216 2.100605 ACAGAGGAGCCAATTCGTTC 57.899 50.000 0.00 0.00 0.00 3.95
216 217 2.568623 AACAGAGGAGCCAATTCGTT 57.431 45.000 0.00 0.00 0.00 3.85
217 218 3.600388 CTTAACAGAGGAGCCAATTCGT 58.400 45.455 0.00 0.00 0.00 3.85
218 219 2.939103 CCTTAACAGAGGAGCCAATTCG 59.061 50.000 0.00 0.00 39.25 3.34
219 220 2.685388 GCCTTAACAGAGGAGCCAATTC 59.315 50.000 0.00 0.00 39.25 2.17
220 221 2.621668 GGCCTTAACAGAGGAGCCAATT 60.622 50.000 0.00 0.00 39.25 2.32
221 222 1.064389 GGCCTTAACAGAGGAGCCAAT 60.064 52.381 0.00 0.00 39.25 3.16
222 223 0.328258 GGCCTTAACAGAGGAGCCAA 59.672 55.000 0.00 0.00 39.25 4.52
223 224 1.899437 CGGCCTTAACAGAGGAGCCA 61.899 60.000 0.00 0.00 40.49 4.75
224 225 1.153349 CGGCCTTAACAGAGGAGCC 60.153 63.158 0.00 0.00 39.25 4.70
225 226 0.466124 ATCGGCCTTAACAGAGGAGC 59.534 55.000 0.00 0.00 39.25 4.70
226 227 1.069358 GGATCGGCCTTAACAGAGGAG 59.931 57.143 0.00 0.00 39.25 3.69
227 228 1.120530 GGATCGGCCTTAACAGAGGA 58.879 55.000 0.00 0.00 39.25 3.71
228 229 0.830648 TGGATCGGCCTTAACAGAGG 59.169 55.000 0.00 0.00 39.93 3.69
229 230 1.757118 TCTGGATCGGCCTTAACAGAG 59.243 52.381 11.52 0.00 37.63 3.35
230 231 1.860641 TCTGGATCGGCCTTAACAGA 58.139 50.000 11.52 11.52 37.63 3.41
231 232 2.691409 TTCTGGATCGGCCTTAACAG 57.309 50.000 0.00 4.55 37.63 3.16
232 233 3.054728 TCAATTCTGGATCGGCCTTAACA 60.055 43.478 0.00 0.00 37.63 2.41
233 234 3.312697 GTCAATTCTGGATCGGCCTTAAC 59.687 47.826 0.00 0.00 37.63 2.01
234 235 3.199946 AGTCAATTCTGGATCGGCCTTAA 59.800 43.478 0.00 0.00 37.63 1.85
235 236 2.771943 AGTCAATTCTGGATCGGCCTTA 59.228 45.455 0.00 0.00 37.63 2.69
236 237 1.561542 AGTCAATTCTGGATCGGCCTT 59.438 47.619 0.00 0.00 37.63 4.35
237 238 1.139853 GAGTCAATTCTGGATCGGCCT 59.860 52.381 0.00 0.00 37.63 5.19
238 239 1.134401 TGAGTCAATTCTGGATCGGCC 60.134 52.381 0.00 0.00 37.10 6.13
239 240 2.315925 TGAGTCAATTCTGGATCGGC 57.684 50.000 0.00 0.00 0.00 5.54
240 241 4.056740 CAGATGAGTCAATTCTGGATCGG 58.943 47.826 13.77 0.00 34.55 4.18
241 242 4.691175 ACAGATGAGTCAATTCTGGATCG 58.309 43.478 22.00 3.53 40.92 3.69
242 243 5.879223 ACAACAGATGAGTCAATTCTGGATC 59.121 40.000 22.00 3.85 40.92 3.36
243 244 5.813383 ACAACAGATGAGTCAATTCTGGAT 58.187 37.500 22.00 11.53 40.92 3.41
244 245 5.012458 AGACAACAGATGAGTCAATTCTGGA 59.988 40.000 22.00 0.00 40.92 3.86
245 246 5.243981 AGACAACAGATGAGTCAATTCTGG 58.756 41.667 22.00 11.48 40.92 3.86
246 247 6.798315 AAGACAACAGATGAGTCAATTCTG 57.202 37.500 18.24 18.24 42.05 3.02
247 248 6.994496 TGAAAGACAACAGATGAGTCAATTCT 59.006 34.615 0.00 0.00 34.39 2.40
248 249 7.041508 ACTGAAAGACAACAGATGAGTCAATTC 60.042 37.037 0.00 12.79 37.43 2.17
249 250 6.769822 ACTGAAAGACAACAGATGAGTCAATT 59.230 34.615 0.00 6.83 37.43 2.32
250 251 6.294473 ACTGAAAGACAACAGATGAGTCAAT 58.706 36.000 0.00 0.00 37.43 2.57
251 252 5.674525 ACTGAAAGACAACAGATGAGTCAA 58.325 37.500 0.00 0.00 37.43 3.18
252 253 5.282055 ACTGAAAGACAACAGATGAGTCA 57.718 39.130 0.00 0.00 37.43 3.41
253 254 5.559799 GCAACTGAAAGACAACAGATGAGTC 60.560 44.000 0.00 0.00 38.54 3.36
254 255 4.274459 GCAACTGAAAGACAACAGATGAGT 59.726 41.667 0.00 0.00 38.54 3.41
255 256 4.514441 AGCAACTGAAAGACAACAGATGAG 59.486 41.667 0.00 0.00 38.54 2.90
256 257 4.454678 AGCAACTGAAAGACAACAGATGA 58.545 39.130 0.00 0.00 38.54 2.92
257 258 4.825546 AGCAACTGAAAGACAACAGATG 57.174 40.909 0.00 0.00 39.01 2.90
258 259 4.883585 TCAAGCAACTGAAAGACAACAGAT 59.116 37.500 0.00 0.00 37.43 2.90
259 260 4.260985 TCAAGCAACTGAAAGACAACAGA 58.739 39.130 0.00 0.00 37.43 3.41
260 261 4.621068 TCAAGCAACTGAAAGACAACAG 57.379 40.909 0.00 0.00 37.43 3.16
261 262 5.357878 AGAATCAAGCAACTGAAAGACAACA 59.642 36.000 0.00 0.00 37.43 3.33
262 263 5.684626 CAGAATCAAGCAACTGAAAGACAAC 59.315 40.000 0.00 0.00 37.43 3.32
263 264 5.734220 GCAGAATCAAGCAACTGAAAGACAA 60.734 40.000 0.00 0.00 37.43 3.18
264 265 4.261322 GCAGAATCAAGCAACTGAAAGACA 60.261 41.667 0.00 0.00 37.43 3.41
265 266 4.023365 AGCAGAATCAAGCAACTGAAAGAC 60.023 41.667 0.00 0.00 37.43 3.01
266 267 4.139786 AGCAGAATCAAGCAACTGAAAGA 58.860 39.130 0.00 0.00 37.43 2.52
267 268 4.500603 AGCAGAATCAAGCAACTGAAAG 57.499 40.909 0.00 0.00 42.29 2.62
268 269 4.924305 AAGCAGAATCAAGCAACTGAAA 57.076 36.364 0.00 0.00 32.90 2.69
269 270 4.924305 AAAGCAGAATCAAGCAACTGAA 57.076 36.364 0.00 0.00 32.90 3.02
270 271 4.924305 AAAAGCAGAATCAAGCAACTGA 57.076 36.364 0.00 0.00 32.90 3.41
271 272 6.864685 TCAATAAAAGCAGAATCAAGCAACTG 59.135 34.615 0.92 0.00 0.00 3.16
272 273 6.985117 TCAATAAAAGCAGAATCAAGCAACT 58.015 32.000 0.92 0.00 0.00 3.16
273 274 7.823149 ATCAATAAAAGCAGAATCAAGCAAC 57.177 32.000 0.92 0.00 0.00 4.17
274 275 8.522003 TGTATCAATAAAAGCAGAATCAAGCAA 58.478 29.630 0.92 0.00 0.00 3.91
275 276 8.054152 TGTATCAATAAAAGCAGAATCAAGCA 57.946 30.769 0.92 0.00 0.00 3.91
276 277 8.400947 TCTGTATCAATAAAAGCAGAATCAAGC 58.599 33.333 0.00 0.00 31.14 4.01
279 280 9.399797 ACATCTGTATCAATAAAAGCAGAATCA 57.600 29.630 0.00 0.00 36.70 2.57
282 283 9.013229 ACAACATCTGTATCAATAAAAGCAGAA 57.987 29.630 0.00 0.00 36.10 3.02
283 284 8.565896 ACAACATCTGTATCAATAAAAGCAGA 57.434 30.769 0.00 0.00 36.10 4.26
284 285 9.069078 CAACAACATCTGTATCAATAAAAGCAG 57.931 33.333 0.00 0.00 37.23 4.24
285 286 7.541783 GCAACAACATCTGTATCAATAAAAGCA 59.458 33.333 0.00 0.00 37.23 3.91
286 287 7.756722 AGCAACAACATCTGTATCAATAAAAGC 59.243 33.333 0.00 0.00 37.23 3.51
289 290 9.448438 AGTAGCAACAACATCTGTATCAATAAA 57.552 29.630 0.00 0.00 37.23 1.40
290 291 8.882736 CAGTAGCAACAACATCTGTATCAATAA 58.117 33.333 0.00 0.00 37.23 1.40
291 292 8.257306 TCAGTAGCAACAACATCTGTATCAATA 58.743 33.333 0.00 0.00 37.23 1.90
292 293 7.105588 TCAGTAGCAACAACATCTGTATCAAT 58.894 34.615 0.00 0.00 37.23 2.57
293 294 6.463360 TCAGTAGCAACAACATCTGTATCAA 58.537 36.000 0.00 0.00 37.23 2.57
294 295 6.036577 TCAGTAGCAACAACATCTGTATCA 57.963 37.500 0.00 0.00 37.23 2.15
295 296 6.368791 TGTTCAGTAGCAACAACATCTGTATC 59.631 38.462 0.00 0.00 37.23 2.24
296 297 6.230472 TGTTCAGTAGCAACAACATCTGTAT 58.770 36.000 0.00 0.00 37.23 2.29
297 298 5.606505 TGTTCAGTAGCAACAACATCTGTA 58.393 37.500 0.00 0.00 37.23 2.74
298 299 4.450976 TGTTCAGTAGCAACAACATCTGT 58.549 39.130 0.00 0.00 41.27 3.41
299 300 5.422666 TTGTTCAGTAGCAACAACATCTG 57.577 39.130 0.00 0.00 38.53 2.90
300 301 6.639632 AATTGTTCAGTAGCAACAACATCT 57.360 33.333 1.80 0.00 44.46 2.90
301 302 6.697019 ACAAATTGTTCAGTAGCAACAACATC 59.303 34.615 1.80 0.00 44.46 3.06
302 303 6.572519 ACAAATTGTTCAGTAGCAACAACAT 58.427 32.000 1.80 0.00 44.46 2.71
303 304 5.960113 ACAAATTGTTCAGTAGCAACAACA 58.040 33.333 1.80 0.00 44.46 3.33
304 305 8.479280 CAATACAAATTGTTCAGTAGCAACAAC 58.521 33.333 3.17 0.00 44.46 3.32
305 306 7.168972 GCAATACAAATTGTTCAGTAGCAACAA 59.831 33.333 3.17 2.22 45.43 2.83
306 307 6.640499 GCAATACAAATTGTTCAGTAGCAACA 59.360 34.615 3.17 0.00 43.75 3.33
307 308 6.863126 AGCAATACAAATTGTTCAGTAGCAAC 59.137 34.615 3.17 0.00 43.75 4.17
308 309 6.862608 CAGCAATACAAATTGTTCAGTAGCAA 59.137 34.615 3.17 0.00 43.75 3.91
309 310 6.016360 ACAGCAATACAAATTGTTCAGTAGCA 60.016 34.615 3.17 0.00 43.75 3.49
310 311 6.306356 CACAGCAATACAAATTGTTCAGTAGC 59.694 38.462 3.17 1.17 43.75 3.58
311 312 7.584108 TCACAGCAATACAAATTGTTCAGTAG 58.416 34.615 3.17 0.00 43.75 2.57
312 313 7.503521 TCACAGCAATACAAATTGTTCAGTA 57.496 32.000 3.17 0.00 43.75 2.74
313 314 6.389830 TCACAGCAATACAAATTGTTCAGT 57.610 33.333 3.17 0.00 43.75 3.41
314 315 6.129378 CGTTCACAGCAATACAAATTGTTCAG 60.129 38.462 3.17 0.00 43.75 3.02
315 316 5.685068 CGTTCACAGCAATACAAATTGTTCA 59.315 36.000 3.17 0.00 43.75 3.18
316 317 5.912396 TCGTTCACAGCAATACAAATTGTTC 59.088 36.000 3.17 0.00 43.75 3.18
317 318 5.826586 TCGTTCACAGCAATACAAATTGTT 58.173 33.333 3.17 0.00 43.75 2.83
318 319 5.431420 TCGTTCACAGCAATACAAATTGT 57.569 34.783 3.43 3.43 43.75 2.71
319 320 6.932901 ATTCGTTCACAGCAATACAAATTG 57.067 33.333 0.00 0.00 44.53 2.32
320 321 7.273381 GCTAATTCGTTCACAGCAATACAAATT 59.727 33.333 0.00 0.00 32.46 1.82
321 322 6.747280 GCTAATTCGTTCACAGCAATACAAAT 59.253 34.615 0.00 0.00 32.46 2.32
322 323 6.072728 AGCTAATTCGTTCACAGCAATACAAA 60.073 34.615 0.00 0.00 34.65 2.83
323 324 5.411361 AGCTAATTCGTTCACAGCAATACAA 59.589 36.000 0.00 0.00 34.65 2.41
324 325 4.935205 AGCTAATTCGTTCACAGCAATACA 59.065 37.500 0.00 0.00 34.65 2.29
325 326 5.470845 AGCTAATTCGTTCACAGCAATAC 57.529 39.130 0.00 0.00 34.65 1.89
326 327 4.570772 GGAGCTAATTCGTTCACAGCAATA 59.429 41.667 0.00 0.00 34.65 1.90
327 328 3.375299 GGAGCTAATTCGTTCACAGCAAT 59.625 43.478 0.00 0.00 34.65 3.56
328 329 2.742053 GGAGCTAATTCGTTCACAGCAA 59.258 45.455 0.00 0.00 34.65 3.91
329 330 2.028112 AGGAGCTAATTCGTTCACAGCA 60.028 45.455 0.00 0.00 34.65 4.41
330 331 2.605366 GAGGAGCTAATTCGTTCACAGC 59.395 50.000 0.00 0.00 0.00 4.40
331 332 3.862267 CAGAGGAGCTAATTCGTTCACAG 59.138 47.826 0.00 0.00 0.00 3.66
332 333 3.258372 ACAGAGGAGCTAATTCGTTCACA 59.742 43.478 0.00 0.00 0.00 3.58
333 334 3.851098 ACAGAGGAGCTAATTCGTTCAC 58.149 45.455 0.00 0.00 0.00 3.18
334 335 4.537135 AACAGAGGAGCTAATTCGTTCA 57.463 40.909 0.00 0.00 0.00 3.18
367 368 9.467796 AGGAATTTAAAATTGGGTGTTCAAAAA 57.532 25.926 0.00 0.00 0.00 1.94
368 369 8.897752 CAGGAATTTAAAATTGGGTGTTCAAAA 58.102 29.630 0.00 0.00 0.00 2.44
369 370 7.500559 CCAGGAATTTAAAATTGGGTGTTCAAA 59.499 33.333 0.00 0.00 0.00 2.69
370 371 6.995091 CCAGGAATTTAAAATTGGGTGTTCAA 59.005 34.615 0.00 0.00 0.00 2.69
371 372 6.327626 TCCAGGAATTTAAAATTGGGTGTTCA 59.672 34.615 0.00 0.00 0.00 3.18
372 373 6.764379 TCCAGGAATTTAAAATTGGGTGTTC 58.236 36.000 0.00 0.00 0.00 3.18
373 374 6.755542 TCCAGGAATTTAAAATTGGGTGTT 57.244 33.333 0.00 0.00 0.00 3.32
374 375 6.070251 GGATCCAGGAATTTAAAATTGGGTGT 60.070 38.462 6.95 0.00 0.00 4.16
375 376 6.348498 GGATCCAGGAATTTAAAATTGGGTG 58.652 40.000 6.95 0.00 0.00 4.61
376 377 5.128663 CGGATCCAGGAATTTAAAATTGGGT 59.871 40.000 13.41 0.00 0.00 4.51
377 378 5.600696 CGGATCCAGGAATTTAAAATTGGG 58.399 41.667 13.41 0.00 0.00 4.12
378 379 5.049828 GCGGATCCAGGAATTTAAAATTGG 58.950 41.667 13.41 0.00 0.00 3.16
379 380 5.049828 GGCGGATCCAGGAATTTAAAATTG 58.950 41.667 13.41 0.00 34.01 2.32
380 381 4.714308 TGGCGGATCCAGGAATTTAAAATT 59.286 37.500 13.41 0.00 40.72 1.82
381 382 4.285863 TGGCGGATCCAGGAATTTAAAAT 58.714 39.130 13.41 0.00 40.72 1.82
382 383 3.702792 TGGCGGATCCAGGAATTTAAAA 58.297 40.909 13.41 0.00 40.72 1.52
383 384 3.374042 TGGCGGATCCAGGAATTTAAA 57.626 42.857 13.41 0.00 40.72 1.52
403 404 0.761187 ATAGATCCATGCACGCCAGT 59.239 50.000 0.00 0.00 0.00 4.00
404 405 2.749280 TATAGATCCATGCACGCCAG 57.251 50.000 0.00 0.00 0.00 4.85
500 501 3.133542 TGGCATCCTCTCTAGTCAACATG 59.866 47.826 0.00 0.00 0.00 3.21
509 510 4.343526 GTGAGAAGATTGGCATCCTCTCTA 59.656 45.833 18.12 8.71 43.50 2.43
511 512 3.134442 AGTGAGAAGATTGGCATCCTCTC 59.866 47.826 13.86 13.86 43.45 3.20
629 644 1.237533 CCCCTGCAAAAATGCCAAAC 58.762 50.000 0.00 0.00 0.00 2.93
643 658 2.949714 CGTACGTACGTATACCCCTG 57.050 55.000 33.95 10.85 44.13 4.45
654 669 4.317348 GGTCTTTGTGTGAAACGTACGTAC 60.317 45.833 23.12 16.71 42.39 3.67
657 672 2.604011 TGGTCTTTGTGTGAAACGTACG 59.396 45.455 15.01 15.01 42.39 3.67
658 673 4.093850 ACTTGGTCTTTGTGTGAAACGTAC 59.906 41.667 0.00 0.00 42.39 3.67
659 674 4.255301 ACTTGGTCTTTGTGTGAAACGTA 58.745 39.130 0.00 0.00 42.39 3.57
660 675 3.078837 ACTTGGTCTTTGTGTGAAACGT 58.921 40.909 0.00 0.00 42.39 3.99
671 686 5.180271 TCTTTGTCAACGTACTTGGTCTTT 58.820 37.500 0.00 0.00 0.00 2.52
690 705 6.604930 CGTTTGTTACCACGGATAAATCTTT 58.395 36.000 0.00 0.00 32.58 2.52
695 710 3.059051 GTGCGTTTGTTACCACGGATAAA 60.059 43.478 6.37 0.00 39.05 1.40
703 718 3.023950 GCGGTGCGTTTGTTACCA 58.976 55.556 0.00 0.00 34.10 3.25
754 769 3.351416 GGTGTCGTTGGGTTCGGC 61.351 66.667 0.00 0.00 0.00 5.54
756 771 2.667199 GGGGTGTCGTTGGGTTCG 60.667 66.667 0.00 0.00 0.00 3.95
787 802 1.168407 GCCATGATCGTGTGGATGGG 61.168 60.000 13.81 0.00 37.72 4.00
931 946 2.125512 GTGAGGGTAGTGCGGCTG 60.126 66.667 0.00 0.00 0.00 4.85
932 947 1.889530 GAAGTGAGGGTAGTGCGGCT 61.890 60.000 0.00 0.00 0.00 5.52
933 948 1.448013 GAAGTGAGGGTAGTGCGGC 60.448 63.158 0.00 0.00 0.00 6.53
934 949 1.218316 GGAAGTGAGGGTAGTGCGG 59.782 63.158 0.00 0.00 0.00 5.69
935 950 1.218316 GGGAAGTGAGGGTAGTGCG 59.782 63.158 0.00 0.00 0.00 5.34
936 951 1.198759 TGGGGAAGTGAGGGTAGTGC 61.199 60.000 0.00 0.00 0.00 4.40
937 952 1.486726 GATGGGGAAGTGAGGGTAGTG 59.513 57.143 0.00 0.00 0.00 2.74
938 953 1.880941 GATGGGGAAGTGAGGGTAGT 58.119 55.000 0.00 0.00 0.00 2.73
956 973 1.207089 GGCTGCCATATATAGTGCCGA 59.793 52.381 15.17 0.00 0.00 5.54
1042 1064 2.359975 GGGTTGACCGGAGCAAGG 60.360 66.667 9.46 0.00 36.71 3.61
1715 1738 1.523258 CATCAGCCTCGCCCTCTTG 60.523 63.158 0.00 0.00 0.00 3.02
1838 1867 5.175491 CAGAACGAATTGAACCAACCAAATG 59.825 40.000 0.00 0.00 0.00 2.32
1883 1916 3.120991 GCTAAGCGCTTACCATATCAACG 60.121 47.826 25.53 12.75 35.14 4.10
2063 2096 5.500645 ACGAAGTTGAAAAAGGAAGGAAG 57.499 39.130 0.00 0.00 37.78 3.46
2067 2100 6.462073 TCGATACGAAGTTGAAAAAGGAAG 57.538 37.500 0.00 0.00 37.78 3.46
2099 2132 1.014352 AAGCGTTTCACTGTCACACC 58.986 50.000 0.00 0.00 0.00 4.16
2106 2156 6.573617 AATTTTCTTTCAAGCGTTTCACTG 57.426 33.333 0.00 0.00 0.00 3.66
2107 2157 7.480810 AGTAATTTTCTTTCAAGCGTTTCACT 58.519 30.769 0.00 0.00 0.00 3.41
2108 2158 7.679659 AGTAATTTTCTTTCAAGCGTTTCAC 57.320 32.000 0.00 0.00 0.00 3.18
2109 2159 8.617809 AGTAGTAATTTTCTTTCAAGCGTTTCA 58.382 29.630 0.00 0.00 0.00 2.69
2110 2160 9.447040 AAGTAGTAATTTTCTTTCAAGCGTTTC 57.553 29.630 0.00 0.00 0.00 2.78
2112 2162 9.874215 GTAAGTAGTAATTTTCTTTCAAGCGTT 57.126 29.630 0.00 0.00 0.00 4.84
2113 2163 9.048446 TGTAAGTAGTAATTTTCTTTCAAGCGT 57.952 29.630 0.00 0.00 0.00 5.07
2114 2164 9.530129 CTGTAAGTAGTAATTTTCTTTCAAGCG 57.470 33.333 0.00 0.00 0.00 4.68
2115 2165 9.331106 GCTGTAAGTAGTAATTTTCTTTCAAGC 57.669 33.333 0.00 0.00 35.30 4.01
2133 2183 5.401531 TTTTCCGTGATCTAGCTGTAAGT 57.598 39.130 0.00 0.00 35.30 2.24
2175 2226 4.024438 CGCTGATGAAATAGTGAAAAGCG 58.976 43.478 0.00 0.00 43.94 4.68
2231 2284 7.598493 TGTAGCTTTTGGATTAGTTTGAATTGC 59.402 33.333 0.00 0.00 0.00 3.56
2232 2285 8.915654 GTGTAGCTTTTGGATTAGTTTGAATTG 58.084 33.333 0.00 0.00 0.00 2.32
2233 2286 7.807907 CGTGTAGCTTTTGGATTAGTTTGAATT 59.192 33.333 0.00 0.00 0.00 2.17
2234 2287 7.305474 CGTGTAGCTTTTGGATTAGTTTGAAT 58.695 34.615 0.00 0.00 0.00 2.57
2235 2288 6.664515 CGTGTAGCTTTTGGATTAGTTTGAA 58.335 36.000 0.00 0.00 0.00 2.69
2236 2289 5.334569 GCGTGTAGCTTTTGGATTAGTTTGA 60.335 40.000 0.00 0.00 44.04 2.69
2237 2290 4.851558 GCGTGTAGCTTTTGGATTAGTTTG 59.148 41.667 0.00 0.00 44.04 2.93
2238 2291 4.378046 CGCGTGTAGCTTTTGGATTAGTTT 60.378 41.667 0.00 0.00 45.59 2.66
2239 2292 3.124636 CGCGTGTAGCTTTTGGATTAGTT 59.875 43.478 0.00 0.00 45.59 2.24
2240 2293 2.671396 CGCGTGTAGCTTTTGGATTAGT 59.329 45.455 0.00 0.00 45.59 2.24
2241 2294 2.030457 CCGCGTGTAGCTTTTGGATTAG 59.970 50.000 4.92 0.00 45.59 1.73
2242 2295 2.004017 CCGCGTGTAGCTTTTGGATTA 58.996 47.619 4.92 0.00 45.59 1.75
2243 2296 0.802494 CCGCGTGTAGCTTTTGGATT 59.198 50.000 4.92 0.00 45.59 3.01
2244 2297 1.644786 GCCGCGTGTAGCTTTTGGAT 61.645 55.000 4.92 0.00 45.59 3.41
2245 2298 2.322081 GCCGCGTGTAGCTTTTGGA 61.322 57.895 4.92 0.00 45.59 3.53
2246 2299 2.175811 GCCGCGTGTAGCTTTTGG 59.824 61.111 4.92 0.00 45.59 3.28
2247 2300 1.154413 CAGCCGCGTGTAGCTTTTG 60.154 57.895 4.92 0.00 45.59 2.44
2248 2301 2.325082 CCAGCCGCGTGTAGCTTTT 61.325 57.895 4.92 0.00 45.59 2.27
2249 2302 2.742372 CCAGCCGCGTGTAGCTTT 60.742 61.111 4.92 0.00 45.59 3.51
2302 2355 3.137913 AGAGGTCAAAGCAGCATCCATAT 59.862 43.478 0.00 0.00 0.00 1.78
2303 2356 2.507058 AGAGGTCAAAGCAGCATCCATA 59.493 45.455 0.00 0.00 0.00 2.74
2309 2362 2.346766 TTTGAGAGGTCAAAGCAGCA 57.653 45.000 0.00 0.00 45.82 4.41
2335 2388 1.153881 GGCCGTCGTCTGTAACCTC 60.154 63.158 0.00 0.00 0.00 3.85
2407 2460 3.187227 ACTGAAGCAAGCGTAATTGAGTG 59.813 43.478 2.01 0.00 31.55 3.51
2418 2471 3.968649 TGTTGATGAAACTGAAGCAAGC 58.031 40.909 0.00 0.00 39.70 4.01
2419 2472 6.267817 TCTTTGTTGATGAAACTGAAGCAAG 58.732 36.000 0.00 0.00 39.70 4.01
2420 2473 6.206395 TCTTTGTTGATGAAACTGAAGCAA 57.794 33.333 0.00 0.00 39.70 3.91
2421 2474 5.833406 TCTTTGTTGATGAAACTGAAGCA 57.167 34.783 0.00 0.00 39.70 3.91
2472 2525 9.893305 CGGTTCTGTTCTATCTAAAACAAAATT 57.107 29.630 0.00 0.00 35.13 1.82
2473 2526 9.280174 TCGGTTCTGTTCTATCTAAAACAAAAT 57.720 29.630 0.00 0.00 35.13 1.82
2474 2527 8.665643 TCGGTTCTGTTCTATCTAAAACAAAA 57.334 30.769 0.00 0.00 35.13 2.44
2475 2528 8.665643 TTCGGTTCTGTTCTATCTAAAACAAA 57.334 30.769 0.00 0.00 35.13 2.83
2476 2529 7.929785 ACTTCGGTTCTGTTCTATCTAAAACAA 59.070 33.333 0.00 0.00 35.13 2.83
2477 2530 7.439381 ACTTCGGTTCTGTTCTATCTAAAACA 58.561 34.615 0.00 0.00 34.41 2.83
2478 2531 7.813627 AGACTTCGGTTCTGTTCTATCTAAAAC 59.186 37.037 0.00 0.00 0.00 2.43
2479 2532 7.893658 AGACTTCGGTTCTGTTCTATCTAAAA 58.106 34.615 0.00 0.00 0.00 1.52
2480 2533 7.463961 AGACTTCGGTTCTGTTCTATCTAAA 57.536 36.000 0.00 0.00 0.00 1.85
2733 2797 1.651240 ATGCATTGCACTGAGGCGTC 61.651 55.000 14.66 0.00 43.04 5.19
2789 2859 6.150474 TGTTAATTAAGTAAAGCTGGAGTGCC 59.850 38.462 0.00 0.00 0.00 5.01
2859 2935 1.277557 AGCTGTCAGCAAGGAGGTAAG 59.722 52.381 26.23 0.00 45.56 2.34
2860 2936 1.352083 AGCTGTCAGCAAGGAGGTAA 58.648 50.000 26.23 0.00 45.56 2.85
2981 3065 3.300765 AGACACGACACCCGGGAC 61.301 66.667 32.02 16.91 46.66 4.46
3200 3296 3.898509 CGAGCGCCTCTCTCCCTG 61.899 72.222 2.29 0.00 39.70 4.45
3203 3299 2.548295 CCTACGAGCGCCTCTCTCC 61.548 68.421 2.29 0.00 39.70 3.71
3269 3370 7.715686 GGAGGGAGTATAAAGTTATGAACCAAG 59.284 40.741 0.00 0.00 0.00 3.61
3288 3389 3.072211 GTTTGTTTTAGGACGGAGGGAG 58.928 50.000 0.00 0.00 0.00 4.30
3289 3390 2.548493 CGTTTGTTTTAGGACGGAGGGA 60.548 50.000 0.00 0.00 32.29 4.20
3290 3391 1.802365 CGTTTGTTTTAGGACGGAGGG 59.198 52.381 0.00 0.00 32.29 4.30
3291 3392 2.477754 GACGTTTGTTTTAGGACGGAGG 59.522 50.000 0.00 0.00 39.63 4.30
3292 3393 3.387397 AGACGTTTGTTTTAGGACGGAG 58.613 45.455 0.00 0.00 39.63 4.63
3293 3394 3.457610 AGACGTTTGTTTTAGGACGGA 57.542 42.857 0.00 0.00 39.63 4.69
3294 3395 5.234972 AGTTAAGACGTTTGTTTTAGGACGG 59.765 40.000 0.00 0.00 39.63 4.79
3295 3396 6.199719 AGAGTTAAGACGTTTGTTTTAGGACG 59.800 38.462 0.00 0.00 41.00 4.79
3296 3397 7.474398 AGAGTTAAGACGTTTGTTTTAGGAC 57.526 36.000 0.00 0.00 0.00 3.85
3297 3398 9.768662 ATTAGAGTTAAGACGTTTGTTTTAGGA 57.231 29.630 0.00 0.00 0.00 2.94
3347 3448 9.352784 TGTTTCAAAATAAGTGTCTCAACTTTG 57.647 29.630 0.00 0.00 40.77 2.77
3350 3451 8.506168 TCTGTTTCAAAATAAGTGTCTCAACT 57.494 30.769 0.00 0.00 0.00 3.16
3412 3561 2.815503 AGGTTGTACCGTTATGGCAAAC 59.184 45.455 0.00 0.00 44.90 2.93
3414 3563 2.702261 GAGGTTGTACCGTTATGGCAA 58.298 47.619 0.00 0.00 44.90 4.52
3415 3564 1.404449 CGAGGTTGTACCGTTATGGCA 60.404 52.381 0.00 0.00 44.90 4.92
3417 3566 2.264813 CACGAGGTTGTACCGTTATGG 58.735 52.381 0.00 0.00 44.90 2.74
3418 3567 2.950433 ACACGAGGTTGTACCGTTATG 58.050 47.619 0.00 0.00 44.90 1.90
3419 3568 3.665745 AACACGAGGTTGTACCGTTAT 57.334 42.857 0.00 0.00 44.90 1.89


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.