Multiple sequence alignment - TraesCS2A01G193100

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS2A01G193100 chr2A 100.000 4297 0 0 1 4297 161642923 161638627 0.000000e+00 7936
1 TraesCS2A01G193100 chr2A 85.238 630 84 9 3189 3813 40550422 40551047 1.300000e-179 640
2 TraesCS2A01G193100 chr2A 89.437 142 15 0 1 142 14409058 14408917 3.410000e-41 180
3 TraesCS2A01G193100 chr2B 95.146 2575 70 21 157 2720 197988804 197991334 0.000000e+00 4012
4 TraesCS2A01G193100 chr2B 94.454 2218 66 14 857 3062 198069954 198072126 0.000000e+00 3362
5 TraesCS2A01G193100 chr2B 98.082 834 16 0 2917 3750 197991332 197992165 0.000000e+00 1452
6 TraesCS2A01G193100 chr2B 97.391 690 18 0 3061 3750 198072284 198072973 0.000000e+00 1175
7 TraesCS2A01G193100 chr2B 89.094 541 26 8 155 694 198069447 198069955 3.620000e-180 641
8 TraesCS2A01G193100 chr5D 89.655 174 12 4 689 860 529218162 529218331 2.600000e-52 217
9 TraesCS2A01G193100 chr6B 90.000 170 11 5 693 860 654874607 654874772 9.360000e-52 215
10 TraesCS2A01G193100 chr4D 89.143 175 14 4 683 855 34661517 34661688 3.370000e-51 213
11 TraesCS2A01G193100 chr4A 88.525 183 12 8 679 858 137966968 137967144 3.370000e-51 213
12 TraesCS2A01G193100 chr4A 88.525 183 12 8 679 858 137972841 137972665 3.370000e-51 213
13 TraesCS2A01G193100 chr4A 90.441 136 12 1 8 142 72013718 72013853 1.230000e-40 178
14 TraesCS2A01G193100 chr4A 87.755 147 17 1 8 154 684052803 684052948 2.050000e-38 171
15 TraesCS2A01G193100 chr3D 88.701 177 15 4 688 862 128214002 128214175 1.210000e-50 211
16 TraesCS2A01G193100 chr7D 88.068 176 16 4 682 855 454079419 454079247 2.030000e-48 204
17 TraesCS2A01G193100 chr7A 86.631 187 18 6 685 869 494786821 494787002 2.620000e-47 200
18 TraesCS2A01G193100 chr7A 89.928 139 14 0 1 139 571321748 571321886 3.410000e-41 180
19 TraesCS2A01G193100 chr6A 90.278 144 13 1 1 143 33590307 33590164 2.040000e-43 187
20 TraesCS2A01G193100 chr6A 89.855 138 14 0 2 139 432928521 432928658 1.230000e-40 178
21 TraesCS2A01G193100 chr3A 90.141 142 14 0 1 142 745903593 745903452 7.340000e-43 185
22 TraesCS2A01G193100 chr3A 89.928 139 12 2 8 145 434458093 434457956 1.230000e-40 178
23 TraesCS2A01G193100 chr3A 88.276 145 17 0 1 145 579525081 579524937 1.590000e-39 174


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS2A01G193100 chr2A 161638627 161642923 4296 True 7936 7936 100.000000 1 4297 1 chr2A.!!$R2 4296
1 TraesCS2A01G193100 chr2A 40550422 40551047 625 False 640 640 85.238000 3189 3813 1 chr2A.!!$F1 624
2 TraesCS2A01G193100 chr2B 197988804 197992165 3361 False 2732 4012 96.614000 157 3750 2 chr2B.!!$F1 3593
3 TraesCS2A01G193100 chr2B 198069447 198072973 3526 False 1726 3362 93.646333 155 3750 3 chr2B.!!$F2 3595

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
79 80 0.034477 CACGGCCCCAAATTCCTACT 60.034 55.0 0.00 0.0 0.00 2.57 F
143 144 0.096976 CGCGGTGAAGTTGGCTTATG 59.903 55.0 0.00 0.0 34.61 1.90 F
242 243 0.105709 TGTCTCTCGGCCATCCCATA 60.106 55.0 2.24 0.0 0.00 2.74 F
601 604 0.105709 GGAGGAAGAGGAGGAGGAGG 60.106 65.0 0.00 0.0 0.00 4.30 F
604 607 0.105709 GGAAGAGGAGGAGGAGGAGG 60.106 65.0 0.00 0.0 0.00 4.30 F
1230 1423 0.108992 TACACCAGACGGAACATCGC 60.109 55.0 0.00 0.0 35.59 4.58 F
2744 2942 0.875059 GTCTTTGAGGTTTGCTCCCG 59.125 55.0 0.00 0.0 0.00 5.14 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1915 2109 0.178975 TGGCCCTTTTTGTCGACCAT 60.179 50.000 14.12 0.0 0.00 3.55 R
2242 2437 7.105588 TGACTAGTTTCATGTGCTATTGATGT 58.894 34.615 0.00 0.0 0.00 3.06 R
2579 2777 0.918310 ATGGGCAAGAGAGGAAGGCT 60.918 55.000 0.00 0.0 0.00 4.58 R
2596 2794 2.038659 GAGGTGAGAGAGAAGGGGATG 58.961 57.143 0.00 0.0 0.00 3.51 R
2711 2909 1.400142 CAAAGACACAAACAGCCGTGA 59.600 47.619 0.00 0.0 36.91 4.35 R
2797 2995 2.122783 ACATACACATTGGGTTCCGG 57.877 50.000 0.00 0.0 0.00 5.14 R
3912 4272 0.033503 AATTCGTTAGGGCCAAGGGG 60.034 55.000 6.18 0.0 37.18 4.79 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
24 25 4.865761 GGATGTGTCCGCGCGCTA 62.866 66.667 30.48 14.71 34.13 4.26
25 26 3.323136 GATGTGTCCGCGCGCTAG 61.323 66.667 30.48 20.41 0.00 3.42
26 27 4.873129 ATGTGTCCGCGCGCTAGG 62.873 66.667 30.48 23.73 0.00 3.02
51 52 3.716195 CCACCGCATCCCAGGACA 61.716 66.667 0.00 0.00 0.00 4.02
52 53 2.124983 CACCGCATCCCAGGACAG 60.125 66.667 0.00 0.00 0.00 3.51
53 54 3.402681 ACCGCATCCCAGGACAGG 61.403 66.667 0.00 0.00 0.00 4.00
54 55 3.402681 CCGCATCCCAGGACAGGT 61.403 66.667 0.00 0.00 0.00 4.00
55 56 2.187946 CGCATCCCAGGACAGGTC 59.812 66.667 0.00 0.00 0.00 3.85
65 66 2.048127 GACAGGTCCAGACACGGC 60.048 66.667 0.00 0.00 0.00 5.68
66 67 3.591254 GACAGGTCCAGACACGGCC 62.591 68.421 0.00 0.00 0.00 6.13
67 68 4.394712 CAGGTCCAGACACGGCCC 62.395 72.222 0.00 0.00 0.00 5.80
70 71 3.948719 GTCCAGACACGGCCCCAA 61.949 66.667 0.00 0.00 0.00 4.12
71 72 3.172106 TCCAGACACGGCCCCAAA 61.172 61.111 0.00 0.00 0.00 3.28
72 73 2.035626 CCAGACACGGCCCCAAAT 59.964 61.111 0.00 0.00 0.00 2.32
73 74 1.606313 CCAGACACGGCCCCAAATT 60.606 57.895 0.00 0.00 0.00 1.82
74 75 1.595093 CCAGACACGGCCCCAAATTC 61.595 60.000 0.00 0.00 0.00 2.17
75 76 1.304134 AGACACGGCCCCAAATTCC 60.304 57.895 0.00 0.00 0.00 3.01
76 77 1.304134 GACACGGCCCCAAATTCCT 60.304 57.895 0.00 0.00 0.00 3.36
77 78 0.034863 GACACGGCCCCAAATTCCTA 60.035 55.000 0.00 0.00 0.00 2.94
78 79 0.323087 ACACGGCCCCAAATTCCTAC 60.323 55.000 0.00 0.00 0.00 3.18
79 80 0.034477 CACGGCCCCAAATTCCTACT 60.034 55.000 0.00 0.00 0.00 2.57
80 81 0.255033 ACGGCCCCAAATTCCTACTC 59.745 55.000 0.00 0.00 0.00 2.59
81 82 0.254747 CGGCCCCAAATTCCTACTCA 59.745 55.000 0.00 0.00 0.00 3.41
82 83 1.340600 CGGCCCCAAATTCCTACTCAA 60.341 52.381 0.00 0.00 0.00 3.02
83 84 2.815158 GGCCCCAAATTCCTACTCAAA 58.185 47.619 0.00 0.00 0.00 2.69
84 85 2.760650 GGCCCCAAATTCCTACTCAAAG 59.239 50.000 0.00 0.00 0.00 2.77
85 86 2.760650 GCCCCAAATTCCTACTCAAAGG 59.239 50.000 0.00 0.00 38.06 3.11
86 87 3.365472 CCCCAAATTCCTACTCAAAGGG 58.635 50.000 0.00 0.00 37.24 3.95
87 88 3.011257 CCCCAAATTCCTACTCAAAGGGA 59.989 47.826 0.00 0.00 37.24 4.20
88 89 4.017126 CCCAAATTCCTACTCAAAGGGAC 58.983 47.826 0.00 0.00 37.24 4.46
89 90 4.508405 CCCAAATTCCTACTCAAAGGGACA 60.508 45.833 0.00 0.00 37.24 4.02
90 91 5.076873 CCAAATTCCTACTCAAAGGGACAA 58.923 41.667 0.00 0.00 37.24 3.18
91 92 5.538433 CCAAATTCCTACTCAAAGGGACAAA 59.462 40.000 0.00 0.00 37.24 2.83
92 93 6.041523 CCAAATTCCTACTCAAAGGGACAAAA 59.958 38.462 0.00 0.00 37.24 2.44
93 94 7.418483 CCAAATTCCTACTCAAAGGGACAAAAA 60.418 37.037 0.00 0.00 37.24 1.94
94 95 6.650427 ATTCCTACTCAAAGGGACAAAAAC 57.350 37.500 0.00 0.00 37.24 2.43
95 96 4.466827 TCCTACTCAAAGGGACAAAAACC 58.533 43.478 0.00 0.00 37.24 3.27
96 97 3.252458 CCTACTCAAAGGGACAAAAACCG 59.748 47.826 0.00 0.00 32.55 4.44
97 98 2.028876 ACTCAAAGGGACAAAAACCGG 58.971 47.619 0.00 0.00 0.00 5.28
98 99 2.303175 CTCAAAGGGACAAAAACCGGA 58.697 47.619 9.46 0.00 0.00 5.14
99 100 2.293399 CTCAAAGGGACAAAAACCGGAG 59.707 50.000 9.46 0.00 0.00 4.63
100 101 2.092321 TCAAAGGGACAAAAACCGGAGA 60.092 45.455 9.46 0.00 0.00 3.71
101 102 2.691011 CAAAGGGACAAAAACCGGAGAA 59.309 45.455 9.46 0.00 0.00 2.87
102 103 2.740506 AGGGACAAAAACCGGAGAAA 57.259 45.000 9.46 0.00 0.00 2.52
103 104 3.021177 AGGGACAAAAACCGGAGAAAA 57.979 42.857 9.46 0.00 0.00 2.29
104 105 2.691526 AGGGACAAAAACCGGAGAAAAC 59.308 45.455 9.46 0.00 0.00 2.43
105 106 2.542205 GGGACAAAAACCGGAGAAAACG 60.542 50.000 9.46 0.00 0.00 3.60
106 107 2.355444 GGACAAAAACCGGAGAAAACGA 59.645 45.455 9.46 0.00 0.00 3.85
107 108 3.181498 GGACAAAAACCGGAGAAAACGAA 60.181 43.478 9.46 0.00 0.00 3.85
108 109 3.761657 ACAAAAACCGGAGAAAACGAAC 58.238 40.909 9.46 0.00 0.00 3.95
109 110 2.742954 AAAACCGGAGAAAACGAACG 57.257 45.000 9.46 0.00 0.00 3.95
110 111 1.655484 AAACCGGAGAAAACGAACGT 58.345 45.000 9.46 0.00 0.00 3.99
111 112 1.211743 AACCGGAGAAAACGAACGTC 58.788 50.000 9.46 0.00 0.00 4.34
112 113 0.598419 ACCGGAGAAAACGAACGTCC 60.598 55.000 9.46 0.00 0.00 4.79
113 114 1.771044 CGGAGAAAACGAACGTCCG 59.229 57.895 0.00 0.00 43.82 4.79
114 115 0.936297 CGGAGAAAACGAACGTCCGT 60.936 55.000 0.00 0.00 44.18 4.69
120 121 2.813901 ACGAACGTCCGTTTGGGA 59.186 55.556 20.46 0.00 44.68 4.37
130 131 4.160635 GTTTGGGATCGCGCGGTG 62.161 66.667 31.69 1.17 0.00 4.94
131 132 4.380781 TTTGGGATCGCGCGGTGA 62.381 61.111 31.69 11.79 0.00 4.02
132 133 3.885538 TTTGGGATCGCGCGGTGAA 62.886 57.895 31.69 11.34 0.00 3.18
133 134 4.812476 TGGGATCGCGCGGTGAAG 62.812 66.667 31.69 0.00 0.00 3.02
134 135 4.814294 GGGATCGCGCGGTGAAGT 62.814 66.667 31.69 9.18 0.00 3.01
135 136 2.813908 GGATCGCGCGGTGAAGTT 60.814 61.111 31.69 6.07 0.00 2.66
136 137 2.395690 GATCGCGCGGTGAAGTTG 59.604 61.111 31.69 0.00 0.00 3.16
137 138 3.083600 GATCGCGCGGTGAAGTTGG 62.084 63.158 31.69 0.00 0.00 3.77
140 141 3.660111 GCGCGGTGAAGTTGGCTT 61.660 61.111 8.83 0.00 37.71 4.35
141 142 2.322081 GCGCGGTGAAGTTGGCTTA 61.322 57.895 8.83 0.00 34.61 3.09
142 143 1.644786 GCGCGGTGAAGTTGGCTTAT 61.645 55.000 8.83 0.00 34.61 1.73
143 144 0.096976 CGCGGTGAAGTTGGCTTATG 59.903 55.000 0.00 0.00 34.61 1.90
144 145 1.448985 GCGGTGAAGTTGGCTTATGA 58.551 50.000 0.00 0.00 34.61 2.15
145 146 1.810151 GCGGTGAAGTTGGCTTATGAA 59.190 47.619 0.00 0.00 34.61 2.57
146 147 2.227865 GCGGTGAAGTTGGCTTATGAAA 59.772 45.455 0.00 0.00 34.61 2.69
147 148 3.670627 GCGGTGAAGTTGGCTTATGAAAG 60.671 47.826 0.00 0.00 34.61 2.62
148 149 3.751175 CGGTGAAGTTGGCTTATGAAAGA 59.249 43.478 0.00 0.00 34.61 2.52
149 150 4.215399 CGGTGAAGTTGGCTTATGAAAGAA 59.785 41.667 0.00 0.00 34.61 2.52
150 151 5.617751 CGGTGAAGTTGGCTTATGAAAGAAG 60.618 44.000 0.00 0.00 34.61 2.85
151 152 5.335976 GGTGAAGTTGGCTTATGAAAGAAGG 60.336 44.000 0.00 0.00 34.61 3.46
152 153 5.473504 GTGAAGTTGGCTTATGAAAGAAGGA 59.526 40.000 0.00 0.00 34.61 3.36
153 154 5.707298 TGAAGTTGGCTTATGAAAGAAGGAG 59.293 40.000 0.00 0.00 34.61 3.69
154 155 5.505181 AGTTGGCTTATGAAAGAAGGAGA 57.495 39.130 0.00 0.00 34.37 3.71
155 156 5.880901 AGTTGGCTTATGAAAGAAGGAGAA 58.119 37.500 0.00 0.00 34.37 2.87
156 157 5.707764 AGTTGGCTTATGAAAGAAGGAGAAC 59.292 40.000 0.00 0.00 34.37 3.01
157 158 4.589908 TGGCTTATGAAAGAAGGAGAACC 58.410 43.478 0.00 0.00 34.37 3.62
158 159 4.042809 TGGCTTATGAAAGAAGGAGAACCA 59.957 41.667 0.00 0.00 35.07 3.67
159 160 5.196695 GGCTTATGAAAGAAGGAGAACCAT 58.803 41.667 0.00 0.00 35.07 3.55
160 161 5.298026 GGCTTATGAAAGAAGGAGAACCATC 59.702 44.000 0.00 0.00 35.07 3.51
161 162 5.882557 GCTTATGAAAGAAGGAGAACCATCA 59.117 40.000 0.00 0.00 36.48 3.07
239 240 1.144936 CTTGTCTCTCGGCCATCCC 59.855 63.158 2.24 0.00 0.00 3.85
240 241 1.612146 TTGTCTCTCGGCCATCCCA 60.612 57.895 2.24 0.00 0.00 4.37
241 242 0.982852 TTGTCTCTCGGCCATCCCAT 60.983 55.000 2.24 0.00 0.00 4.00
242 243 0.105709 TGTCTCTCGGCCATCCCATA 60.106 55.000 2.24 0.00 0.00 2.74
355 358 2.830704 AAGCCGACGAAACCCTAGCG 62.831 60.000 0.00 0.00 0.00 4.26
359 362 1.503542 GACGAAACCCTAGCGTCGA 59.496 57.895 0.00 0.00 43.76 4.20
388 391 3.007973 GCGAAGGAGAGCCCGAGTT 62.008 63.158 0.00 0.00 40.87 3.01
421 424 4.647615 CCGGCGACTGCTATCCCG 62.648 72.222 9.30 9.25 42.25 5.14
546 549 1.374758 CGCCCCAGATCTATTCGGC 60.375 63.158 0.00 3.19 0.00 5.54
588 591 0.970937 ATGCGTTCGAGGAGGAGGAA 60.971 55.000 0.00 0.00 0.00 3.36
599 602 0.930726 GAGGAGGAAGAGGAGGAGGA 59.069 60.000 0.00 0.00 0.00 3.71
600 603 0.933700 AGGAGGAAGAGGAGGAGGAG 59.066 60.000 0.00 0.00 0.00 3.69
601 604 0.105709 GGAGGAAGAGGAGGAGGAGG 60.106 65.000 0.00 0.00 0.00 4.30
602 605 0.930726 GAGGAAGAGGAGGAGGAGGA 59.069 60.000 0.00 0.00 0.00 3.71
603 606 0.933700 AGGAAGAGGAGGAGGAGGAG 59.066 60.000 0.00 0.00 0.00 3.69
604 607 0.105709 GGAAGAGGAGGAGGAGGAGG 60.106 65.000 0.00 0.00 0.00 4.30
605 608 0.930726 GAAGAGGAGGAGGAGGAGGA 59.069 60.000 0.00 0.00 0.00 3.71
606 609 0.933700 AAGAGGAGGAGGAGGAGGAG 59.066 60.000 0.00 0.00 0.00 3.69
607 610 0.998945 AGAGGAGGAGGAGGAGGAGG 60.999 65.000 0.00 0.00 0.00 4.30
692 695 4.442192 CCGCCTAGCTTCTCTATGTTTTCT 60.442 45.833 0.00 0.00 0.00 2.52
693 696 5.221263 CCGCCTAGCTTCTCTATGTTTTCTA 60.221 44.000 0.00 0.00 0.00 2.10
694 697 5.688176 CGCCTAGCTTCTCTATGTTTTCTAC 59.312 44.000 0.00 0.00 0.00 2.59
695 698 6.460399 CGCCTAGCTTCTCTATGTTTTCTACT 60.460 42.308 0.00 0.00 0.00 2.57
696 699 7.269316 GCCTAGCTTCTCTATGTTTTCTACTT 58.731 38.462 0.00 0.00 0.00 2.24
697 700 7.436970 GCCTAGCTTCTCTATGTTTTCTACTTC 59.563 40.741 0.00 0.00 0.00 3.01
698 701 7.923878 CCTAGCTTCTCTATGTTTTCTACTTCC 59.076 40.741 0.00 0.00 0.00 3.46
699 702 7.489239 AGCTTCTCTATGTTTTCTACTTCCT 57.511 36.000 0.00 0.00 0.00 3.36
700 703 7.552459 AGCTTCTCTATGTTTTCTACTTCCTC 58.448 38.462 0.00 0.00 0.00 3.71
701 704 7.398904 AGCTTCTCTATGTTTTCTACTTCCTCT 59.601 37.037 0.00 0.00 0.00 3.69
702 705 7.491048 GCTTCTCTATGTTTTCTACTTCCTCTG 59.509 40.741 0.00 0.00 0.00 3.35
703 706 8.423906 TTCTCTATGTTTTCTACTTCCTCTGT 57.576 34.615 0.00 0.00 0.00 3.41
704 707 8.423906 TCTCTATGTTTTCTACTTCCTCTGTT 57.576 34.615 0.00 0.00 0.00 3.16
705 708 8.524487 TCTCTATGTTTTCTACTTCCTCTGTTC 58.476 37.037 0.00 0.00 0.00 3.18
706 709 7.612677 TCTATGTTTTCTACTTCCTCTGTTCC 58.387 38.462 0.00 0.00 0.00 3.62
707 710 5.888982 TGTTTTCTACTTCCTCTGTTCCT 57.111 39.130 0.00 0.00 0.00 3.36
708 711 6.989155 TGTTTTCTACTTCCTCTGTTCCTA 57.011 37.500 0.00 0.00 0.00 2.94
709 712 7.369551 TGTTTTCTACTTCCTCTGTTCCTAA 57.630 36.000 0.00 0.00 0.00 2.69
710 713 7.798071 TGTTTTCTACTTCCTCTGTTCCTAAA 58.202 34.615 0.00 0.00 0.00 1.85
711 714 8.437575 TGTTTTCTACTTCCTCTGTTCCTAAAT 58.562 33.333 0.00 0.00 0.00 1.40
712 715 9.939802 GTTTTCTACTTCCTCTGTTCCTAAATA 57.060 33.333 0.00 0.00 0.00 1.40
713 716 9.939802 TTTTCTACTTCCTCTGTTCCTAAATAC 57.060 33.333 0.00 0.00 0.00 1.89
714 717 8.896722 TTCTACTTCCTCTGTTCCTAAATACT 57.103 34.615 0.00 0.00 0.00 2.12
715 718 9.986157 TTCTACTTCCTCTGTTCCTAAATACTA 57.014 33.333 0.00 0.00 0.00 1.82
716 719 9.406113 TCTACTTCCTCTGTTCCTAAATACTAC 57.594 37.037 0.00 0.00 0.00 2.73
717 720 9.186837 CTACTTCCTCTGTTCCTAAATACTACA 57.813 37.037 0.00 0.00 0.00 2.74
718 721 8.431910 ACTTCCTCTGTTCCTAAATACTACAA 57.568 34.615 0.00 0.00 0.00 2.41
719 722 8.532819 ACTTCCTCTGTTCCTAAATACTACAAG 58.467 37.037 0.00 0.00 0.00 3.16
720 723 8.431910 TTCCTCTGTTCCTAAATACTACAAGT 57.568 34.615 0.00 0.00 0.00 3.16
721 724 8.064336 TCCTCTGTTCCTAAATACTACAAGTC 57.936 38.462 0.00 0.00 0.00 3.01
722 725 7.894364 TCCTCTGTTCCTAAATACTACAAGTCT 59.106 37.037 0.00 0.00 0.00 3.24
723 726 8.532819 CCTCTGTTCCTAAATACTACAAGTCTT 58.467 37.037 0.00 0.00 0.00 3.01
724 727 9.930693 CTCTGTTCCTAAATACTACAAGTCTTT 57.069 33.333 0.00 0.00 30.97 2.52
736 739 7.710766 ACTACAAGTCTTTTTAGAGGTTTCG 57.289 36.000 5.37 0.00 0.00 3.46
737 740 7.495055 ACTACAAGTCTTTTTAGAGGTTTCGA 58.505 34.615 5.37 0.00 0.00 3.71
738 741 8.148999 ACTACAAGTCTTTTTAGAGGTTTCGAT 58.851 33.333 5.37 0.00 0.00 3.59
739 742 9.635520 CTACAAGTCTTTTTAGAGGTTTCGATA 57.364 33.333 0.00 0.00 0.00 2.92
740 743 8.897872 ACAAGTCTTTTTAGAGGTTTCGATAA 57.102 30.769 0.00 0.00 0.00 1.75
741 744 8.989980 ACAAGTCTTTTTAGAGGTTTCGATAAG 58.010 33.333 0.00 0.00 0.00 1.73
742 745 9.204570 CAAGTCTTTTTAGAGGTTTCGATAAGA 57.795 33.333 0.00 0.00 0.00 2.10
743 746 9.774413 AAGTCTTTTTAGAGGTTTCGATAAGAA 57.226 29.630 0.00 0.00 37.01 2.52
744 747 9.205719 AGTCTTTTTAGAGGTTTCGATAAGAAC 57.794 33.333 0.00 0.00 38.83 3.01
745 748 9.205719 GTCTTTTTAGAGGTTTCGATAAGAACT 57.794 33.333 0.00 0.00 38.83 3.01
748 751 9.985730 TTTTTAGAGGTTTCGATAAGAACTACA 57.014 29.630 0.00 0.00 38.83 2.74
753 756 9.132923 AGAGGTTTCGATAAGAACTACATATGA 57.867 33.333 10.38 0.00 38.83 2.15
754 757 9.915629 GAGGTTTCGATAAGAACTACATATGAT 57.084 33.333 10.38 0.00 38.83 2.45
755 758 9.698309 AGGTTTCGATAAGAACTACATATGATG 57.302 33.333 10.38 4.01 38.83 3.07
756 759 8.926710 GGTTTCGATAAGAACTACATATGATGG 58.073 37.037 10.38 1.48 38.83 3.51
757 760 9.692749 GTTTCGATAAGAACTACATATGATGGA 57.307 33.333 10.38 0.00 38.83 3.41
797 800 6.734104 AGTGTAGATTCACTCATTTTGCTC 57.266 37.500 0.00 0.00 44.07 4.26
798 801 5.645497 AGTGTAGATTCACTCATTTTGCTCC 59.355 40.000 0.00 0.00 44.07 4.70
799 802 4.631377 TGTAGATTCACTCATTTTGCTCCG 59.369 41.667 0.00 0.00 0.00 4.63
800 803 3.679389 AGATTCACTCATTTTGCTCCGT 58.321 40.909 0.00 0.00 0.00 4.69
801 804 4.832248 AGATTCACTCATTTTGCTCCGTA 58.168 39.130 0.00 0.00 0.00 4.02
802 805 5.431765 AGATTCACTCATTTTGCTCCGTAT 58.568 37.500 0.00 0.00 0.00 3.06
803 806 4.944962 TTCACTCATTTTGCTCCGTATG 57.055 40.909 0.00 0.00 0.00 2.39
804 807 3.937814 TCACTCATTTTGCTCCGTATGT 58.062 40.909 0.00 0.00 0.00 2.29
805 808 5.079689 TCACTCATTTTGCTCCGTATGTA 57.920 39.130 0.00 0.00 0.00 2.29
806 809 5.109210 TCACTCATTTTGCTCCGTATGTAG 58.891 41.667 0.00 0.00 0.00 2.74
807 810 4.870426 CACTCATTTTGCTCCGTATGTAGT 59.130 41.667 0.00 0.00 0.00 2.73
808 811 5.005779 CACTCATTTTGCTCCGTATGTAGTC 59.994 44.000 0.00 0.00 0.00 2.59
809 812 4.439057 TCATTTTGCTCCGTATGTAGTCC 58.561 43.478 0.00 0.00 0.00 3.85
810 813 2.572191 TTTGCTCCGTATGTAGTCCG 57.428 50.000 0.00 0.00 0.00 4.79
811 814 1.466856 TTGCTCCGTATGTAGTCCGT 58.533 50.000 0.00 0.00 0.00 4.69
812 815 2.330440 TGCTCCGTATGTAGTCCGTA 57.670 50.000 0.00 0.00 0.00 4.02
813 816 2.854963 TGCTCCGTATGTAGTCCGTAT 58.145 47.619 0.00 0.00 0.00 3.06
814 817 3.216800 TGCTCCGTATGTAGTCCGTATT 58.783 45.455 0.00 0.00 0.00 1.89
815 818 3.004002 TGCTCCGTATGTAGTCCGTATTG 59.996 47.826 0.00 0.00 0.00 1.90
816 819 3.611057 GCTCCGTATGTAGTCCGTATTGG 60.611 52.174 0.00 0.00 40.09 3.16
831 834 7.850935 TCCGTATTGGAATATCTAAAGGACT 57.149 36.000 0.00 0.00 46.38 3.85
832 835 8.258850 TCCGTATTGGAATATCTAAAGGACTT 57.741 34.615 0.00 0.00 46.38 3.01
833 836 8.148351 TCCGTATTGGAATATCTAAAGGACTTG 58.852 37.037 0.00 0.00 46.38 3.16
834 837 7.931948 CCGTATTGGAATATCTAAAGGACTTGT 59.068 37.037 0.00 0.00 42.00 3.16
835 838 9.976511 CGTATTGGAATATCTAAAGGACTTGTA 57.023 33.333 0.00 0.00 0.00 2.41
846 849 8.767478 TCTAAAGGACTTGTATTTAGAAACGG 57.233 34.615 13.58 0.00 40.66 4.44
847 850 8.587608 TCTAAAGGACTTGTATTTAGAAACGGA 58.412 33.333 13.58 0.00 40.66 4.69
848 851 7.668525 AAAGGACTTGTATTTAGAAACGGAG 57.331 36.000 0.00 0.00 0.00 4.63
849 852 5.731591 AGGACTTGTATTTAGAAACGGAGG 58.268 41.667 0.00 0.00 0.00 4.30
850 853 4.874396 GGACTTGTATTTAGAAACGGAGGG 59.126 45.833 0.00 0.00 0.00 4.30
851 854 5.337813 GGACTTGTATTTAGAAACGGAGGGA 60.338 44.000 0.00 0.00 0.00 4.20
852 855 5.731591 ACTTGTATTTAGAAACGGAGGGAG 58.268 41.667 0.00 0.00 0.00 4.30
853 856 5.247792 ACTTGTATTTAGAAACGGAGGGAGT 59.752 40.000 0.00 0.00 0.00 3.85
854 857 6.438425 ACTTGTATTTAGAAACGGAGGGAGTA 59.562 38.462 0.00 0.00 0.00 2.59
855 858 6.855763 TGTATTTAGAAACGGAGGGAGTAA 57.144 37.500 0.00 0.00 0.00 2.24
1021 1204 1.222115 GGATTACGATCCGCTGGCAC 61.222 60.000 0.00 0.00 42.36 5.01
1062 1245 5.163237 GGAGACAAACTGCCCAGGTATATAA 60.163 44.000 0.00 0.00 0.00 0.98
1063 1246 6.465894 GGAGACAAACTGCCCAGGTATATAAT 60.466 42.308 0.00 0.00 0.00 1.28
1064 1247 6.911308 AGACAAACTGCCCAGGTATATAATT 58.089 36.000 0.00 0.00 0.00 1.40
1065 1248 7.354312 AGACAAACTGCCCAGGTATATAATTT 58.646 34.615 0.00 0.00 0.00 1.82
1066 1249 7.839200 AGACAAACTGCCCAGGTATATAATTTT 59.161 33.333 0.00 0.00 0.00 1.82
1067 1250 8.374184 ACAAACTGCCCAGGTATATAATTTTT 57.626 30.769 0.00 0.00 0.00 1.94
1068 1251 8.257306 ACAAACTGCCCAGGTATATAATTTTTG 58.743 33.333 0.00 0.00 0.00 2.44
1069 1252 6.405278 ACTGCCCAGGTATATAATTTTTGC 57.595 37.500 0.00 0.00 0.00 3.68
1070 1253 5.896678 ACTGCCCAGGTATATAATTTTTGCA 59.103 36.000 0.00 0.00 0.00 4.08
1071 1254 6.040842 ACTGCCCAGGTATATAATTTTTGCAG 59.959 38.462 14.74 14.74 44.96 4.41
1181 1374 4.577677 TTCCGGTGGCAGCAGCAA 62.578 61.111 17.80 2.72 44.61 3.91
1205 1398 6.698380 ACAAAAGTAGACGACATATGGAGTT 58.302 36.000 7.80 1.43 0.00 3.01
1230 1423 0.108992 TACACCAGACGGAACATCGC 60.109 55.000 0.00 0.00 35.59 4.58
1334 1527 3.517500 TGAGGCAACAGGTATATGTGTCA 59.482 43.478 0.00 0.00 41.41 3.58
1532 1725 1.931841 CGTGATCCAAGACTGATGCTG 59.068 52.381 0.00 0.00 0.00 4.41
1541 1734 3.182341 AGACTGATGCTGCAGATCTTC 57.818 47.619 20.43 15.86 39.20 2.87
1662 1855 2.447408 TAACCGTCCCTGCAGAGATA 57.553 50.000 17.39 0.00 0.00 1.98
1733 1927 6.127479 TGTTTCCATGTAACTTTTCAGTTGCT 60.127 34.615 8.76 0.00 43.93 3.91
1734 1928 7.067615 TGTTTCCATGTAACTTTTCAGTTGCTA 59.932 33.333 8.76 0.00 43.93 3.49
1735 1929 7.575414 TTCCATGTAACTTTTCAGTTGCTAA 57.425 32.000 5.06 0.00 43.93 3.09
1736 1930 7.575414 TCCATGTAACTTTTCAGTTGCTAAA 57.425 32.000 5.06 0.00 43.93 1.85
1737 1931 8.001881 TCCATGTAACTTTTCAGTTGCTAAAA 57.998 30.769 5.06 0.00 43.93 1.52
1738 1932 8.470805 TCCATGTAACTTTTCAGTTGCTAAAAA 58.529 29.630 5.06 0.00 43.93 1.94
1739 1933 8.539674 CCATGTAACTTTTCAGTTGCTAAAAAC 58.460 33.333 5.06 0.00 43.93 2.43
1740 1934 9.081997 CATGTAACTTTTCAGTTGCTAAAAACA 57.918 29.630 5.06 0.00 43.93 2.83
1741 1935 9.646427 ATGTAACTTTTCAGTTGCTAAAAACAA 57.354 25.926 5.06 0.00 43.93 2.83
1742 1936 9.646427 TGTAACTTTTCAGTTGCTAAAAACAAT 57.354 25.926 5.06 0.00 43.93 2.71
1745 1939 9.869757 AACTTTTCAGTTGCTAAAAACAATACT 57.130 25.926 0.00 0.00 42.05 2.12
1746 1940 9.301153 ACTTTTCAGTTGCTAAAAACAATACTG 57.699 29.630 0.00 0.00 32.21 2.74
1747 1941 8.641499 TTTTCAGTTGCTAAAAACAATACTGG 57.359 30.769 0.00 0.00 32.21 4.00
1748 1942 7.575414 TTCAGTTGCTAAAAACAATACTGGA 57.425 32.000 0.00 0.00 32.21 3.86
1749 1943 7.759489 TCAGTTGCTAAAAACAATACTGGAT 57.241 32.000 0.00 0.00 32.21 3.41
1750 1944 7.592938 TCAGTTGCTAAAAACAATACTGGATG 58.407 34.615 0.00 0.00 32.21 3.51
1751 1945 6.308766 CAGTTGCTAAAAACAATACTGGATGC 59.691 38.462 0.00 0.00 32.21 3.91
1752 1946 5.973899 TGCTAAAAACAATACTGGATGCA 57.026 34.783 0.00 0.00 0.00 3.96
1753 1947 6.338214 TGCTAAAAACAATACTGGATGCAA 57.662 33.333 0.00 0.00 0.00 4.08
1754 1948 6.753180 TGCTAAAAACAATACTGGATGCAAA 58.247 32.000 0.00 0.00 0.00 3.68
1755 1949 6.644592 TGCTAAAAACAATACTGGATGCAAAC 59.355 34.615 0.00 0.00 0.00 2.93
1776 1970 4.863491 ACAGTGCATGTGAGATTTTTGTC 58.137 39.130 6.06 0.00 41.91 3.18
1779 1973 4.754618 AGTGCATGTGAGATTTTTGTCGTA 59.245 37.500 0.00 0.00 0.00 3.43
1795 1989 7.591006 TTTGTCGTACTGATTCTTCATTACC 57.409 36.000 0.00 0.00 35.60 2.85
1821 2015 6.014669 TGGTTGGATCCACTAAAAGGAAATTG 60.015 38.462 15.91 0.00 38.93 2.32
1822 2016 5.659440 TGGATCCACTAAAAGGAAATTGC 57.341 39.130 11.44 0.00 38.93 3.56
1907 2101 8.655651 TTGTGATTTGTTCTTTTTGTTATCCC 57.344 30.769 0.00 0.00 0.00 3.85
1909 2103 8.482128 TGTGATTTGTTCTTTTTGTTATCCCTT 58.518 29.630 0.00 0.00 0.00 3.95
2004 2199 2.500098 CCCCTTTCAGTATGTTCTCCGA 59.500 50.000 0.00 0.00 37.40 4.55
2236 2431 7.492994 GTCCTGGAATTCTGATCTAGTTGTAAC 59.507 40.741 5.23 0.00 0.00 2.50
2237 2432 7.400339 TCCTGGAATTCTGATCTAGTTGTAACT 59.600 37.037 5.23 2.51 42.91 2.24
2238 2433 8.043710 CCTGGAATTCTGATCTAGTTGTAACTT 58.956 37.037 5.23 0.00 40.37 2.66
2239 2434 8.777865 TGGAATTCTGATCTAGTTGTAACTTG 57.222 34.615 5.23 1.36 40.37 3.16
2240 2435 8.375506 TGGAATTCTGATCTAGTTGTAACTTGT 58.624 33.333 5.23 0.00 40.37 3.16
2241 2436 9.871238 GGAATTCTGATCTAGTTGTAACTTGTA 57.129 33.333 5.23 0.00 40.37 2.41
2429 2625 8.007742 AGAGATAGTAATACAGGTGAATGGAGT 58.992 37.037 0.00 0.00 0.00 3.85
2561 2759 2.990195 TCTCATATAGGCCCACCATGT 58.010 47.619 0.00 0.00 39.06 3.21
2579 2777 7.272244 CACCATGTCATAGTACAGGTTAATCA 58.728 38.462 0.00 0.00 32.22 2.57
2596 2794 1.077858 CAGCCTTCCTCTCTTGCCC 60.078 63.158 0.00 0.00 0.00 5.36
2711 2909 2.163815 CGTCGTGGGAAGACTATGTTCT 59.836 50.000 0.00 0.00 36.53 3.01
2722 2920 3.006967 AGACTATGTTCTCACGGCTGTTT 59.993 43.478 0.00 0.00 0.00 2.83
2744 2942 0.875059 GTCTTTGAGGTTTGCTCCCG 59.125 55.000 0.00 0.00 0.00 5.14
2797 2995 1.601147 GACGCGCTGCATAGATCGTC 61.601 60.000 5.73 9.94 40.32 4.20
2862 3060 6.528072 GGACTTGTGCTAAATTCATTGTAAGC 59.472 38.462 0.00 0.00 0.00 3.09
2873 3071 4.098914 TCATTGTAAGCTCCCACTGTTT 57.901 40.909 0.00 0.00 0.00 2.83
3035 3233 4.808364 TGTAAAAGAAATGCCAAACAGTGC 59.192 37.500 0.00 0.00 0.00 4.40
3295 3653 3.508952 AAAGGAGGAAGGAGATGGGTA 57.491 47.619 0.00 0.00 0.00 3.69
3527 3885 2.618241 TGGTGAGATTGTGCTGTTTGAC 59.382 45.455 0.00 0.00 0.00 3.18
3596 3954 0.332972 AGGCTGAGGGGAAATTGGAC 59.667 55.000 0.00 0.00 0.00 4.02
3680 4038 2.496070 TGTTAGGTTCCCTGATGACTCG 59.504 50.000 0.00 0.00 34.61 4.18
3686 4044 2.472695 TCCCTGATGACTCGGTTTTG 57.527 50.000 0.00 0.00 0.00 2.44
3737 4095 6.320164 TGCTTTTTGCTCCTAAGAACTTTACA 59.680 34.615 0.00 0.00 43.37 2.41
3750 4108 2.162681 ACTTTACAATGGCTGGCTGAC 58.837 47.619 2.00 0.00 0.00 3.51
3751 4109 1.474077 CTTTACAATGGCTGGCTGACC 59.526 52.381 2.00 0.00 0.00 4.02
3752 4110 0.698238 TTACAATGGCTGGCTGACCT 59.302 50.000 2.00 0.00 36.63 3.85
3753 4111 0.035152 TACAATGGCTGGCTGACCTG 60.035 55.000 2.00 0.00 37.92 4.00
3758 4118 2.033141 GCTGGCTGACCTGAAGCA 59.967 61.111 0.00 0.00 42.69 3.91
3776 4136 5.588246 TGAAGCAAACTGAACAAGACATACA 59.412 36.000 0.00 0.00 0.00 2.29
3791 4151 7.921214 ACAAGACATACAGTTCTGTAATATCCG 59.079 37.037 15.16 9.98 0.00 4.18
3796 4156 7.705325 ACATACAGTTCTGTAATATCCGTGTTC 59.295 37.037 15.16 0.00 0.00 3.18
3799 4159 7.159372 ACAGTTCTGTAATATCCGTGTTCTTT 58.841 34.615 3.47 0.00 0.00 2.52
3800 4160 8.308931 ACAGTTCTGTAATATCCGTGTTCTTTA 58.691 33.333 3.47 0.00 0.00 1.85
3801 4161 9.314321 CAGTTCTGTAATATCCGTGTTCTTTAT 57.686 33.333 0.00 0.00 0.00 1.40
3802 4162 9.530633 AGTTCTGTAATATCCGTGTTCTTTATC 57.469 33.333 0.00 0.00 0.00 1.75
3805 4165 9.745880 TCTGTAATATCCGTGTTCTTTATCTTC 57.254 33.333 0.00 0.00 0.00 2.87
3814 4174 9.798994 TCCGTGTTCTTTATCTTCTATAGTTTC 57.201 33.333 0.00 0.00 0.00 2.78
3815 4175 9.804758 CCGTGTTCTTTATCTTCTATAGTTTCT 57.195 33.333 0.00 0.00 0.00 2.52
3850 4210 3.131709 AGTACATGGTCTATGCATGGC 57.868 47.619 10.16 2.62 40.59 4.40
3851 4211 2.707791 AGTACATGGTCTATGCATGGCT 59.292 45.455 10.16 0.00 40.59 4.75
3852 4212 3.903714 AGTACATGGTCTATGCATGGCTA 59.096 43.478 10.16 1.13 40.59 3.93
3853 4213 3.413846 ACATGGTCTATGCATGGCTAG 57.586 47.619 10.16 0.00 40.59 3.42
3854 4214 2.039480 ACATGGTCTATGCATGGCTAGG 59.961 50.000 10.16 5.30 40.59 3.02
3855 4215 0.397941 TGGTCTATGCATGGCTAGGC 59.602 55.000 10.16 9.85 0.00 3.93
3856 4216 0.671781 GGTCTATGCATGGCTAGGCG 60.672 60.000 10.16 0.00 36.12 5.52
3857 4217 0.671781 GTCTATGCATGGCTAGGCGG 60.672 60.000 10.16 7.59 36.12 6.13
3858 4218 2.032528 TATGCATGGCTAGGCGGC 59.967 61.111 21.21 21.21 36.12 6.53
3859 4219 3.881952 TATGCATGGCTAGGCGGCG 62.882 63.158 22.04 0.51 42.02 6.46
3882 4242 3.532155 GGAGACGCTCCTCCGCAT 61.532 66.667 15.90 0.00 46.41 4.73
3883 4243 2.279120 GAGACGCTCCTCCGCATG 60.279 66.667 0.00 0.00 0.00 4.06
3884 4244 2.755876 AGACGCTCCTCCGCATGA 60.756 61.111 0.00 0.00 0.00 3.07
3885 4245 2.184322 GACGCTCCTCCGCATGAA 59.816 61.111 0.00 0.00 0.00 2.57
3886 4246 1.880340 GACGCTCCTCCGCATGAAG 60.880 63.158 0.00 0.00 0.00 3.02
3887 4247 3.267860 CGCTCCTCCGCATGAAGC 61.268 66.667 0.00 0.00 40.87 3.86
3888 4248 2.899339 GCTCCTCCGCATGAAGCC 60.899 66.667 0.00 0.00 41.38 4.35
3889 4249 2.587194 CTCCTCCGCATGAAGCCG 60.587 66.667 0.00 0.00 41.38 5.52
3890 4250 4.161295 TCCTCCGCATGAAGCCGG 62.161 66.667 0.00 0.00 41.38 6.13
3891 4251 4.161295 CCTCCGCATGAAGCCGGA 62.161 66.667 5.05 11.06 41.42 5.14
3893 4253 4.838152 TCCGCATGAAGCCGGAGC 62.838 66.667 5.05 0.00 39.72 4.70
3897 4257 4.473520 CATGAAGCCGGAGCCCGT 62.474 66.667 5.05 0.00 46.80 5.28
3898 4258 4.473520 ATGAAGCCGGAGCCCGTG 62.474 66.667 5.05 5.60 46.80 4.94
3907 4267 3.775654 GAGCCCGTGTCCCCTCTG 61.776 72.222 0.00 0.00 0.00 3.35
3910 4270 3.775654 CCCGTGTCCCCTCTGCTC 61.776 72.222 0.00 0.00 0.00 4.26
3911 4271 2.681778 CCGTGTCCCCTCTGCTCT 60.682 66.667 0.00 0.00 0.00 4.09
3912 4272 2.716017 CCGTGTCCCCTCTGCTCTC 61.716 68.421 0.00 0.00 0.00 3.20
3913 4273 2.716017 CGTGTCCCCTCTGCTCTCC 61.716 68.421 0.00 0.00 0.00 3.71
3914 4274 2.039624 TGTCCCCTCTGCTCTCCC 59.960 66.667 0.00 0.00 0.00 4.30
3915 4275 2.766229 GTCCCCTCTGCTCTCCCC 60.766 72.222 0.00 0.00 0.00 4.81
3916 4276 2.955246 TCCCCTCTGCTCTCCCCT 60.955 66.667 0.00 0.00 0.00 4.79
3917 4277 2.041928 CCCCTCTGCTCTCCCCTT 59.958 66.667 0.00 0.00 0.00 3.95
3918 4278 2.373707 CCCCTCTGCTCTCCCCTTG 61.374 68.421 0.00 0.00 0.00 3.61
3919 4279 2.373707 CCCTCTGCTCTCCCCTTGG 61.374 68.421 0.00 0.00 0.00 3.61
3920 4280 2.588989 CTCTGCTCTCCCCTTGGC 59.411 66.667 0.00 0.00 0.00 4.52
3921 4281 3.011517 TCTGCTCTCCCCTTGGCC 61.012 66.667 0.00 0.00 0.00 5.36
3922 4282 4.120755 CTGCTCTCCCCTTGGCCC 62.121 72.222 0.00 0.00 0.00 5.80
3923 4283 4.682714 TGCTCTCCCCTTGGCCCT 62.683 66.667 0.00 0.00 0.00 5.19
3924 4284 2.366972 GCTCTCCCCTTGGCCCTA 60.367 66.667 0.00 0.00 0.00 3.53
3925 4285 2.001269 GCTCTCCCCTTGGCCCTAA 61.001 63.158 0.00 0.00 0.00 2.69
3926 4286 1.915983 CTCTCCCCTTGGCCCTAAC 59.084 63.158 0.00 0.00 0.00 2.34
3927 4287 1.972660 CTCTCCCCTTGGCCCTAACG 61.973 65.000 0.00 0.00 0.00 3.18
3928 4288 1.993391 CTCCCCTTGGCCCTAACGA 60.993 63.158 0.00 0.00 0.00 3.85
3929 4289 1.539372 TCCCCTTGGCCCTAACGAA 60.539 57.895 0.00 0.00 0.00 3.85
3930 4290 0.917333 TCCCCTTGGCCCTAACGAAT 60.917 55.000 0.00 0.00 0.00 3.34
3931 4291 0.033503 CCCCTTGGCCCTAACGAATT 60.034 55.000 0.00 0.00 0.00 2.17
3932 4292 1.618616 CCCCTTGGCCCTAACGAATTT 60.619 52.381 0.00 0.00 0.00 1.82
3933 4293 1.476488 CCCTTGGCCCTAACGAATTTG 59.524 52.381 0.00 0.00 0.00 2.32
3934 4294 2.442413 CCTTGGCCCTAACGAATTTGA 58.558 47.619 0.00 0.00 0.00 2.69
3935 4295 2.823154 CCTTGGCCCTAACGAATTTGAA 59.177 45.455 0.00 0.00 0.00 2.69
3936 4296 3.257127 CCTTGGCCCTAACGAATTTGAAA 59.743 43.478 0.00 0.00 0.00 2.69
3937 4297 4.262249 CCTTGGCCCTAACGAATTTGAAAA 60.262 41.667 0.00 0.00 0.00 2.29
3938 4298 4.939052 TGGCCCTAACGAATTTGAAAAA 57.061 36.364 0.00 0.00 0.00 1.94
4058 4418 8.802856 TGTTCACAAAATACAAAAGAATTCACG 58.197 29.630 8.44 0.00 0.00 4.35
4059 4419 9.015577 GTTCACAAAATACAAAAGAATTCACGA 57.984 29.630 8.44 0.00 0.00 4.35
4060 4420 9.574458 TTCACAAAATACAAAAGAATTCACGAA 57.426 25.926 8.44 0.00 0.00 3.85
4061 4421 9.574458 TCACAAAATACAAAAGAATTCACGAAA 57.426 25.926 8.44 0.00 0.00 3.46
4126 4486 2.536761 TTCACGGATTGAAAGGACGT 57.463 45.000 0.00 0.00 41.51 4.34
4127 4487 2.536761 TCACGGATTGAAAGGACGTT 57.463 45.000 0.00 0.00 35.36 3.99
4128 4488 2.841215 TCACGGATTGAAAGGACGTTT 58.159 42.857 0.00 0.00 35.36 3.60
4129 4489 2.546368 TCACGGATTGAAAGGACGTTTG 59.454 45.455 0.00 0.00 35.36 2.93
4130 4490 2.289547 CACGGATTGAAAGGACGTTTGT 59.710 45.455 0.00 0.00 35.36 2.83
4131 4491 2.289547 ACGGATTGAAAGGACGTTTGTG 59.710 45.455 0.00 0.00 33.54 3.33
4132 4492 2.350388 CGGATTGAAAGGACGTTTGTGG 60.350 50.000 0.00 0.00 0.00 4.17
4133 4493 2.882137 GGATTGAAAGGACGTTTGTGGA 59.118 45.455 0.00 0.00 0.00 4.02
4134 4494 3.316868 GGATTGAAAGGACGTTTGTGGAA 59.683 43.478 0.00 0.00 0.00 3.53
4135 4495 4.022329 GGATTGAAAGGACGTTTGTGGAAT 60.022 41.667 0.00 0.00 0.00 3.01
4136 4496 3.980646 TGAAAGGACGTTTGTGGAATG 57.019 42.857 0.00 0.00 0.00 2.67
4137 4497 3.546724 TGAAAGGACGTTTGTGGAATGA 58.453 40.909 0.00 0.00 0.00 2.57
4138 4498 3.948473 TGAAAGGACGTTTGTGGAATGAA 59.052 39.130 0.00 0.00 0.00 2.57
4139 4499 4.399618 TGAAAGGACGTTTGTGGAATGAAA 59.600 37.500 0.00 0.00 0.00 2.69
4140 4500 4.993029 AAGGACGTTTGTGGAATGAAAA 57.007 36.364 0.00 0.00 0.00 2.29
4141 4501 4.301637 AGGACGTTTGTGGAATGAAAAC 57.698 40.909 0.00 0.00 0.00 2.43
4142 4502 3.697045 AGGACGTTTGTGGAATGAAAACA 59.303 39.130 0.00 0.00 34.23 2.83
4143 4503 3.794564 GGACGTTTGTGGAATGAAAACAC 59.205 43.478 0.00 0.00 34.23 3.32
4144 4504 4.416620 GACGTTTGTGGAATGAAAACACA 58.583 39.130 0.00 0.00 42.77 3.72
4145 4505 5.004922 ACGTTTGTGGAATGAAAACACAT 57.995 34.783 0.00 0.00 43.75 3.21
4146 4506 5.415221 ACGTTTGTGGAATGAAAACACATT 58.585 33.333 0.00 0.00 43.75 2.71
4147 4507 6.565234 ACGTTTGTGGAATGAAAACACATTA 58.435 32.000 0.00 0.00 43.75 1.90
4148 4508 7.036220 ACGTTTGTGGAATGAAAACACATTAA 58.964 30.769 0.00 0.00 43.75 1.40
4149 4509 7.708752 ACGTTTGTGGAATGAAAACACATTAAT 59.291 29.630 0.00 0.00 43.75 1.40
4150 4510 8.003224 CGTTTGTGGAATGAAAACACATTAATG 58.997 33.333 14.01 14.01 43.75 1.90
4151 4511 9.039870 GTTTGTGGAATGAAAACACATTAATGA 57.960 29.630 22.16 0.00 43.75 2.57
4152 4512 9.605275 TTTGTGGAATGAAAACACATTAATGAA 57.395 25.926 22.16 0.00 43.75 2.57
4153 4513 9.605275 TTGTGGAATGAAAACACATTAATGAAA 57.395 25.926 22.16 0.10 43.75 2.69
4154 4514 9.775854 TGTGGAATGAAAACACATTAATGAAAT 57.224 25.926 22.16 3.94 39.92 2.17
4179 4539 4.640789 AAAACGCACACCTATTTGAACA 57.359 36.364 0.00 0.00 0.00 3.18
4180 4540 4.640789 AAACGCACACCTATTTGAACAA 57.359 36.364 0.00 0.00 0.00 2.83
4181 4541 4.640789 AACGCACACCTATTTGAACAAA 57.359 36.364 2.48 2.48 34.46 2.83
4182 4542 4.640789 ACGCACACCTATTTGAACAAAA 57.359 36.364 4.12 0.00 33.56 2.44
4183 4543 5.195001 ACGCACACCTATTTGAACAAAAT 57.805 34.783 4.12 0.00 41.47 1.82
4184 4544 5.596845 ACGCACACCTATTTGAACAAAATT 58.403 33.333 4.12 0.00 39.29 1.82
4185 4545 6.740110 ACGCACACCTATTTGAACAAAATTA 58.260 32.000 4.12 0.00 39.29 1.40
4186 4546 7.203910 ACGCACACCTATTTGAACAAAATTAA 58.796 30.769 4.12 0.00 39.29 1.40
4187 4547 7.381139 ACGCACACCTATTTGAACAAAATTAAG 59.619 33.333 4.12 1.24 39.29 1.85
4188 4548 7.593273 CGCACACCTATTTGAACAAAATTAAGA 59.407 33.333 4.12 0.00 39.29 2.10
4189 4549 9.255304 GCACACCTATTTGAACAAAATTAAGAA 57.745 29.630 4.12 0.00 39.29 2.52
4198 4558 9.483062 TTTGAACAAAATTAAGAAATGTTTGCG 57.517 25.926 0.00 0.00 34.59 4.85
4199 4559 8.412608 TGAACAAAATTAAGAAATGTTTGCGA 57.587 26.923 0.00 0.00 34.59 5.10
4200 4560 8.873830 TGAACAAAATTAAGAAATGTTTGCGAA 58.126 25.926 0.00 0.00 34.59 4.70
4201 4561 9.862585 GAACAAAATTAAGAAATGTTTGCGAAT 57.137 25.926 0.00 0.00 34.59 3.34
4205 4565 9.662545 AAAATTAAGAAATGTTTGCGAATTTGG 57.337 25.926 0.00 0.00 0.00 3.28
4206 4566 8.600449 AATTAAGAAATGTTTGCGAATTTGGA 57.400 26.923 0.00 0.00 0.00 3.53
4207 4567 8.600449 ATTAAGAAATGTTTGCGAATTTGGAA 57.400 26.923 0.00 0.00 0.00 3.53
4208 4568 6.917217 AAGAAATGTTTGCGAATTTGGAAA 57.083 29.167 8.19 8.19 0.00 3.13
4209 4569 6.917217 AGAAATGTTTGCGAATTTGGAAAA 57.083 29.167 13.36 5.70 30.75 2.29
4210 4570 7.313951 AGAAATGTTTGCGAATTTGGAAAAA 57.686 28.000 13.36 9.26 30.75 1.94
4294 4654 9.737427 TTTAACAAATGCTAAAAAGTTCATCGA 57.263 25.926 0.00 0.00 0.00 3.59
4295 4655 9.906660 TTAACAAATGCTAAAAAGTTCATCGAT 57.093 25.926 0.00 0.00 0.00 3.59
4296 4656 8.816640 AACAAATGCTAAAAAGTTCATCGATT 57.183 26.923 0.00 0.00 0.00 3.34
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
8 9 3.323136 CTAGCGCGCGGACACATC 61.323 66.667 33.06 12.91 0.00 3.06
9 10 4.873129 CCTAGCGCGCGGACACAT 62.873 66.667 33.06 8.96 0.00 3.21
34 35 3.687321 CTGTCCTGGGATGCGGTGG 62.687 68.421 0.00 0.00 0.00 4.61
35 36 2.124983 CTGTCCTGGGATGCGGTG 60.125 66.667 0.00 0.00 0.00 4.94
36 37 3.402681 CCTGTCCTGGGATGCGGT 61.403 66.667 0.00 0.00 0.00 5.68
37 38 3.391665 GACCTGTCCTGGGATGCGG 62.392 68.421 0.00 0.00 0.00 5.69
38 39 2.187946 GACCTGTCCTGGGATGCG 59.812 66.667 0.00 0.00 0.00 4.73
39 40 2.592308 GGACCTGTCCTGGGATGC 59.408 66.667 9.11 0.00 46.16 3.91
48 49 2.048127 GCCGTGTCTGGACCTGTC 60.048 66.667 0.00 0.00 0.00 3.51
49 50 3.626924 GGCCGTGTCTGGACCTGT 61.627 66.667 0.00 0.00 0.00 4.00
53 54 2.764637 ATTTGGGGCCGTGTCTGGAC 62.765 60.000 0.00 0.00 35.71 4.02
54 55 2.075355 AATTTGGGGCCGTGTCTGGA 62.075 55.000 0.00 0.00 0.00 3.86
55 56 1.595093 GAATTTGGGGCCGTGTCTGG 61.595 60.000 0.00 0.00 0.00 3.86
56 57 1.595093 GGAATTTGGGGCCGTGTCTG 61.595 60.000 0.00 0.00 0.00 3.51
57 58 1.304134 GGAATTTGGGGCCGTGTCT 60.304 57.895 0.00 0.00 0.00 3.41
58 59 0.034863 TAGGAATTTGGGGCCGTGTC 60.035 55.000 0.00 0.00 0.00 3.67
59 60 0.323087 GTAGGAATTTGGGGCCGTGT 60.323 55.000 0.00 0.00 0.00 4.49
60 61 0.034477 AGTAGGAATTTGGGGCCGTG 60.034 55.000 0.00 0.00 0.00 4.94
61 62 0.255033 GAGTAGGAATTTGGGGCCGT 59.745 55.000 0.00 0.00 0.00 5.68
62 63 0.254747 TGAGTAGGAATTTGGGGCCG 59.745 55.000 0.00 0.00 0.00 6.13
63 64 2.525105 TTGAGTAGGAATTTGGGGCC 57.475 50.000 0.00 0.00 0.00 5.80
64 65 2.760650 CCTTTGAGTAGGAATTTGGGGC 59.239 50.000 0.00 0.00 37.50 5.80
65 66 3.011257 TCCCTTTGAGTAGGAATTTGGGG 59.989 47.826 0.00 0.00 37.50 4.96
66 67 4.017126 GTCCCTTTGAGTAGGAATTTGGG 58.983 47.826 0.00 0.00 37.50 4.12
67 68 4.662278 TGTCCCTTTGAGTAGGAATTTGG 58.338 43.478 0.00 0.00 37.50 3.28
68 69 6.648879 TTTGTCCCTTTGAGTAGGAATTTG 57.351 37.500 0.00 0.00 37.50 2.32
69 70 7.418597 GGTTTTTGTCCCTTTGAGTAGGAATTT 60.419 37.037 0.00 0.00 37.50 1.82
70 71 6.041637 GGTTTTTGTCCCTTTGAGTAGGAATT 59.958 38.462 0.00 0.00 37.50 2.17
71 72 5.538813 GGTTTTTGTCCCTTTGAGTAGGAAT 59.461 40.000 0.00 0.00 37.50 3.01
72 73 4.891168 GGTTTTTGTCCCTTTGAGTAGGAA 59.109 41.667 0.00 0.00 37.50 3.36
73 74 4.466827 GGTTTTTGTCCCTTTGAGTAGGA 58.533 43.478 0.00 0.00 37.50 2.94
74 75 3.252458 CGGTTTTTGTCCCTTTGAGTAGG 59.748 47.826 0.00 0.00 34.92 3.18
75 76 3.252458 CCGGTTTTTGTCCCTTTGAGTAG 59.748 47.826 0.00 0.00 0.00 2.57
76 77 3.117963 TCCGGTTTTTGTCCCTTTGAGTA 60.118 43.478 0.00 0.00 0.00 2.59
77 78 2.028876 CCGGTTTTTGTCCCTTTGAGT 58.971 47.619 0.00 0.00 0.00 3.41
78 79 2.293399 CTCCGGTTTTTGTCCCTTTGAG 59.707 50.000 0.00 0.00 0.00 3.02
79 80 2.092321 TCTCCGGTTTTTGTCCCTTTGA 60.092 45.455 0.00 0.00 0.00 2.69
80 81 2.303175 TCTCCGGTTTTTGTCCCTTTG 58.697 47.619 0.00 0.00 0.00 2.77
81 82 2.740506 TCTCCGGTTTTTGTCCCTTT 57.259 45.000 0.00 0.00 0.00 3.11
82 83 2.740506 TTCTCCGGTTTTTGTCCCTT 57.259 45.000 0.00 0.00 0.00 3.95
83 84 2.691526 GTTTTCTCCGGTTTTTGTCCCT 59.308 45.455 0.00 0.00 0.00 4.20
84 85 2.542205 CGTTTTCTCCGGTTTTTGTCCC 60.542 50.000 0.00 0.00 0.00 4.46
85 86 2.355444 TCGTTTTCTCCGGTTTTTGTCC 59.645 45.455 0.00 0.00 0.00 4.02
86 87 3.678915 TCGTTTTCTCCGGTTTTTGTC 57.321 42.857 0.00 0.00 0.00 3.18
87 88 3.728566 CGTTCGTTTTCTCCGGTTTTTGT 60.729 43.478 0.00 0.00 0.00 2.83
88 89 2.779471 CGTTCGTTTTCTCCGGTTTTTG 59.221 45.455 0.00 0.00 0.00 2.44
89 90 2.419673 ACGTTCGTTTTCTCCGGTTTTT 59.580 40.909 0.00 0.00 0.00 1.94
90 91 2.009051 ACGTTCGTTTTCTCCGGTTTT 58.991 42.857 0.00 0.00 0.00 2.43
91 92 1.594397 GACGTTCGTTTTCTCCGGTTT 59.406 47.619 0.00 0.00 0.00 3.27
92 93 1.211743 GACGTTCGTTTTCTCCGGTT 58.788 50.000 0.00 0.00 0.00 4.44
93 94 0.598419 GGACGTTCGTTTTCTCCGGT 60.598 55.000 0.00 0.00 0.00 5.28
94 95 1.611592 CGGACGTTCGTTTTCTCCGG 61.612 60.000 8.45 0.00 35.86 5.14
95 96 0.936297 ACGGACGTTCGTTTTCTCCG 60.936 55.000 18.05 10.67 40.85 4.63
96 97 2.890941 ACGGACGTTCGTTTTCTCC 58.109 52.632 18.05 0.00 40.85 3.71
103 104 0.668401 GATCCCAAACGGACGTTCGT 60.668 55.000 18.05 18.05 46.09 3.85
104 105 1.680105 CGATCCCAAACGGACGTTCG 61.680 60.000 16.31 16.31 46.09 3.95
105 106 1.963190 GCGATCCCAAACGGACGTTC 61.963 60.000 10.76 0.00 46.09 3.95
106 107 2.030958 GCGATCCCAAACGGACGTT 61.031 57.895 3.99 3.99 46.09 3.99
107 108 2.433664 GCGATCCCAAACGGACGT 60.434 61.111 0.00 0.00 46.09 4.34
108 109 3.550992 CGCGATCCCAAACGGACG 61.551 66.667 0.00 0.00 46.09 4.79
109 110 3.861263 GCGCGATCCCAAACGGAC 61.861 66.667 12.10 0.00 46.09 4.79
113 114 4.160635 CACCGCGCGATCCCAAAC 62.161 66.667 34.63 0.00 0.00 2.93
114 115 3.885538 TTCACCGCGCGATCCCAAA 62.886 57.895 34.63 13.30 0.00 3.28
115 116 4.380781 TTCACCGCGCGATCCCAA 62.381 61.111 34.63 13.30 0.00 4.12
116 117 4.812476 CTTCACCGCGCGATCCCA 62.812 66.667 34.63 10.01 0.00 4.37
117 118 4.814294 ACTTCACCGCGCGATCCC 62.814 66.667 34.63 0.00 0.00 3.85
118 119 2.813908 AACTTCACCGCGCGATCC 60.814 61.111 34.63 0.00 0.00 3.36
119 120 2.395690 CAACTTCACCGCGCGATC 59.604 61.111 34.63 0.00 0.00 3.69
120 121 3.118454 CCAACTTCACCGCGCGAT 61.118 61.111 34.63 13.37 0.00 4.58
123 124 1.644786 ATAAGCCAACTTCACCGCGC 61.645 55.000 0.00 0.00 37.33 6.86
124 125 0.096976 CATAAGCCAACTTCACCGCG 59.903 55.000 0.00 0.00 37.33 6.46
125 126 1.448985 TCATAAGCCAACTTCACCGC 58.551 50.000 0.00 0.00 37.33 5.68
126 127 3.751175 TCTTTCATAAGCCAACTTCACCG 59.249 43.478 0.00 0.00 37.33 4.94
127 128 5.335976 CCTTCTTTCATAAGCCAACTTCACC 60.336 44.000 0.00 0.00 37.33 4.02
128 129 5.473504 TCCTTCTTTCATAAGCCAACTTCAC 59.526 40.000 0.00 0.00 37.33 3.18
129 130 5.630121 TCCTTCTTTCATAAGCCAACTTCA 58.370 37.500 0.00 0.00 37.33 3.02
130 131 5.940470 TCTCCTTCTTTCATAAGCCAACTTC 59.060 40.000 0.00 0.00 37.33 3.01
131 132 5.880901 TCTCCTTCTTTCATAAGCCAACTT 58.119 37.500 0.00 0.00 40.07 2.66
132 133 5.505181 TCTCCTTCTTTCATAAGCCAACT 57.495 39.130 0.00 0.00 0.00 3.16
133 134 5.106118 GGTTCTCCTTCTTTCATAAGCCAAC 60.106 44.000 0.00 0.00 0.00 3.77
134 135 5.010282 GGTTCTCCTTCTTTCATAAGCCAA 58.990 41.667 0.00 0.00 0.00 4.52
135 136 4.042809 TGGTTCTCCTTCTTTCATAAGCCA 59.957 41.667 0.00 0.00 34.23 4.75
136 137 4.589908 TGGTTCTCCTTCTTTCATAAGCC 58.410 43.478 0.00 0.00 34.23 4.35
137 138 5.882557 TGATGGTTCTCCTTCTTTCATAAGC 59.117 40.000 0.00 0.00 38.32 3.09
138 139 7.609532 ACTTGATGGTTCTCCTTCTTTCATAAG 59.390 37.037 0.00 0.00 38.32 1.73
139 140 7.461749 ACTTGATGGTTCTCCTTCTTTCATAA 58.538 34.615 0.00 0.00 38.32 1.90
140 141 7.020827 ACTTGATGGTTCTCCTTCTTTCATA 57.979 36.000 0.00 0.00 38.32 2.15
141 142 5.885465 ACTTGATGGTTCTCCTTCTTTCAT 58.115 37.500 0.00 0.00 38.32 2.57
142 143 5.308825 GACTTGATGGTTCTCCTTCTTTCA 58.691 41.667 0.00 0.00 38.32 2.69
143 144 4.390297 CGACTTGATGGTTCTCCTTCTTTC 59.610 45.833 0.00 0.00 38.32 2.62
144 145 4.319177 CGACTTGATGGTTCTCCTTCTTT 58.681 43.478 0.00 0.00 38.32 2.52
145 146 3.307059 CCGACTTGATGGTTCTCCTTCTT 60.307 47.826 0.00 0.00 38.32 2.52
146 147 2.234908 CCGACTTGATGGTTCTCCTTCT 59.765 50.000 0.00 0.00 38.32 2.85
147 148 2.622436 CCGACTTGATGGTTCTCCTTC 58.378 52.381 0.00 0.00 38.08 3.46
148 149 1.279271 CCCGACTTGATGGTTCTCCTT 59.721 52.381 0.00 0.00 34.23 3.36
149 150 0.905357 CCCGACTTGATGGTTCTCCT 59.095 55.000 0.00 0.00 34.23 3.69
150 151 0.744771 GCCCGACTTGATGGTTCTCC 60.745 60.000 0.00 0.00 0.00 3.71
151 152 0.036388 TGCCCGACTTGATGGTTCTC 60.036 55.000 0.00 0.00 0.00 2.87
152 153 0.321653 GTGCCCGACTTGATGGTTCT 60.322 55.000 0.00 0.00 0.00 3.01
153 154 1.635663 CGTGCCCGACTTGATGGTTC 61.636 60.000 0.00 0.00 35.63 3.62
154 155 1.671054 CGTGCCCGACTTGATGGTT 60.671 57.895 0.00 0.00 35.63 3.67
155 156 2.047274 CGTGCCCGACTTGATGGT 60.047 61.111 0.00 0.00 35.63 3.55
156 157 2.593468 ATCCGTGCCCGACTTGATGG 62.593 60.000 0.00 0.00 35.63 3.51
157 158 0.104120 TATCCGTGCCCGACTTGATG 59.896 55.000 0.00 0.00 35.63 3.07
158 159 1.048601 ATATCCGTGCCCGACTTGAT 58.951 50.000 0.00 0.00 35.63 2.57
159 160 0.828022 AATATCCGTGCCCGACTTGA 59.172 50.000 0.00 0.00 35.63 3.02
160 161 1.663695 AAATATCCGTGCCCGACTTG 58.336 50.000 0.00 0.00 35.63 3.16
161 162 2.014128 CAAAATATCCGTGCCCGACTT 58.986 47.619 0.00 0.00 35.63 3.01
205 206 0.872388 CAAGCGAAACGGTAGGCTTT 59.128 50.000 8.07 0.00 42.67 3.51
239 240 3.031013 GTTTGGGGATTGGGGTTCTATG 58.969 50.000 0.00 0.00 0.00 2.23
240 241 2.023404 GGTTTGGGGATTGGGGTTCTAT 60.023 50.000 0.00 0.00 0.00 1.98
241 242 1.359818 GGTTTGGGGATTGGGGTTCTA 59.640 52.381 0.00 0.00 0.00 2.10
242 243 0.116342 GGTTTGGGGATTGGGGTTCT 59.884 55.000 0.00 0.00 0.00 3.01
274 276 4.516652 AGGATTCTTTCTTGATCTGGGG 57.483 45.455 0.00 0.00 0.00 4.96
355 358 0.731514 TTCGCCGACAACATCTCGAC 60.732 55.000 0.00 0.00 32.20 4.20
359 362 0.108615 CTCCTTCGCCGACAACATCT 60.109 55.000 0.00 0.00 0.00 2.90
385 388 1.289380 GAAGGGCGTGTCGAGAACT 59.711 57.895 0.00 0.00 0.00 3.01
388 391 3.379445 GGGAAGGGCGTGTCGAGA 61.379 66.667 0.00 0.00 0.00 4.04
434 437 1.762957 GATCTGTGGGGATTTCGGAGA 59.237 52.381 0.00 0.00 0.00 3.71
437 440 2.717639 AAGATCTGTGGGGATTTCGG 57.282 50.000 0.00 0.00 0.00 4.30
546 549 1.033574 GGAGACGATGGTGGGTAGAG 58.966 60.000 0.00 0.00 0.00 2.43
588 591 0.998945 CCTCCTCCTCCTCCTCCTCT 60.999 65.000 0.00 0.00 0.00 3.69
628 631 5.265989 GAGGAACCCTCTCTCTTTCTTCTA 58.734 45.833 5.78 0.00 46.41 2.10
692 695 9.537852 TTGTAGTATTTAGGAACAGAGGAAGTA 57.462 33.333 0.00 0.00 0.00 2.24
693 696 8.431910 TTGTAGTATTTAGGAACAGAGGAAGT 57.568 34.615 0.00 0.00 0.00 3.01
694 697 8.532819 ACTTGTAGTATTTAGGAACAGAGGAAG 58.467 37.037 0.00 0.00 0.00 3.46
695 698 8.431910 ACTTGTAGTATTTAGGAACAGAGGAA 57.568 34.615 0.00 0.00 0.00 3.36
696 699 7.894364 AGACTTGTAGTATTTAGGAACAGAGGA 59.106 37.037 0.00 0.00 0.00 3.71
697 700 8.068892 AGACTTGTAGTATTTAGGAACAGAGG 57.931 38.462 0.00 0.00 0.00 3.69
698 701 9.930693 AAAGACTTGTAGTATTTAGGAACAGAG 57.069 33.333 0.00 0.00 37.81 3.35
710 713 9.420551 CGAAACCTCTAAAAAGACTTGTAGTAT 57.579 33.333 0.00 0.00 0.00 2.12
711 714 8.632679 TCGAAACCTCTAAAAAGACTTGTAGTA 58.367 33.333 0.00 0.00 0.00 1.82
712 715 7.495055 TCGAAACCTCTAAAAAGACTTGTAGT 58.505 34.615 0.00 0.00 0.00 2.73
713 716 7.941795 TCGAAACCTCTAAAAAGACTTGTAG 57.058 36.000 0.00 0.00 0.00 2.74
714 717 9.985730 TTATCGAAACCTCTAAAAAGACTTGTA 57.014 29.630 0.00 0.00 0.00 2.41
715 718 8.897872 TTATCGAAACCTCTAAAAAGACTTGT 57.102 30.769 0.00 0.00 0.00 3.16
716 719 9.204570 TCTTATCGAAACCTCTAAAAAGACTTG 57.795 33.333 0.00 0.00 0.00 3.16
717 720 9.774413 TTCTTATCGAAACCTCTAAAAAGACTT 57.226 29.630 0.00 0.00 0.00 3.01
718 721 9.205719 GTTCTTATCGAAACCTCTAAAAAGACT 57.794 33.333 0.00 0.00 32.41 3.24
719 722 9.205719 AGTTCTTATCGAAACCTCTAAAAAGAC 57.794 33.333 0.00 0.00 32.41 3.01
722 725 9.985730 TGTAGTTCTTATCGAAACCTCTAAAAA 57.014 29.630 0.00 0.00 32.41 1.94
727 730 9.132923 TCATATGTAGTTCTTATCGAAACCTCT 57.867 33.333 1.90 0.00 32.41 3.69
728 731 9.915629 ATCATATGTAGTTCTTATCGAAACCTC 57.084 33.333 1.90 0.00 32.41 3.85
729 732 9.698309 CATCATATGTAGTTCTTATCGAAACCT 57.302 33.333 1.90 0.00 32.41 3.50
730 733 8.926710 CCATCATATGTAGTTCTTATCGAAACC 58.073 37.037 1.90 0.00 32.41 3.27
731 734 9.692749 TCCATCATATGTAGTTCTTATCGAAAC 57.307 33.333 1.90 0.00 32.41 2.78
775 778 5.446473 CGGAGCAAAATGAGTGAATCTACAC 60.446 44.000 0.00 0.00 40.60 2.90
776 779 4.631377 CGGAGCAAAATGAGTGAATCTACA 59.369 41.667 0.00 0.00 0.00 2.74
777 780 4.631813 ACGGAGCAAAATGAGTGAATCTAC 59.368 41.667 0.00 0.00 0.00 2.59
778 781 4.832248 ACGGAGCAAAATGAGTGAATCTA 58.168 39.130 0.00 0.00 0.00 1.98
779 782 3.679389 ACGGAGCAAAATGAGTGAATCT 58.321 40.909 0.00 0.00 0.00 2.40
780 783 5.065218 ACATACGGAGCAAAATGAGTGAATC 59.935 40.000 0.00 0.00 0.00 2.52
781 784 4.943705 ACATACGGAGCAAAATGAGTGAAT 59.056 37.500 0.00 0.00 0.00 2.57
782 785 4.323417 ACATACGGAGCAAAATGAGTGAA 58.677 39.130 0.00 0.00 0.00 3.18
783 786 3.937814 ACATACGGAGCAAAATGAGTGA 58.062 40.909 0.00 0.00 0.00 3.41
784 787 4.870426 ACTACATACGGAGCAAAATGAGTG 59.130 41.667 0.00 0.00 0.00 3.51
785 788 5.086104 ACTACATACGGAGCAAAATGAGT 57.914 39.130 0.00 0.00 0.00 3.41
786 789 4.508124 GGACTACATACGGAGCAAAATGAG 59.492 45.833 0.00 0.00 0.00 2.90
787 790 4.439057 GGACTACATACGGAGCAAAATGA 58.561 43.478 0.00 0.00 0.00 2.57
788 791 3.245284 CGGACTACATACGGAGCAAAATG 59.755 47.826 0.00 0.00 0.00 2.32
789 792 3.118884 ACGGACTACATACGGAGCAAAAT 60.119 43.478 0.00 0.00 0.00 1.82
790 793 2.231964 ACGGACTACATACGGAGCAAAA 59.768 45.455 0.00 0.00 0.00 2.44
791 794 1.820519 ACGGACTACATACGGAGCAAA 59.179 47.619 0.00 0.00 0.00 3.68
792 795 1.466856 ACGGACTACATACGGAGCAA 58.533 50.000 0.00 0.00 0.00 3.91
793 796 2.330440 TACGGACTACATACGGAGCA 57.670 50.000 0.00 0.00 0.00 4.26
794 797 3.562505 CAATACGGACTACATACGGAGC 58.437 50.000 0.00 0.00 0.00 4.70
795 798 3.817084 TCCAATACGGACTACATACGGAG 59.183 47.826 0.00 0.00 39.64 4.63
796 799 3.819368 TCCAATACGGACTACATACGGA 58.181 45.455 0.00 0.00 39.64 4.69
797 800 4.572985 TTCCAATACGGACTACATACGG 57.427 45.455 0.00 0.00 46.36 4.02
798 801 7.759465 AGATATTCCAATACGGACTACATACG 58.241 38.462 0.00 0.00 46.36 3.06
802 805 8.582437 CCTTTAGATATTCCAATACGGACTACA 58.418 37.037 0.00 0.00 46.36 2.74
803 806 8.800332 TCCTTTAGATATTCCAATACGGACTAC 58.200 37.037 0.00 0.00 46.36 2.73
804 807 8.800332 GTCCTTTAGATATTCCAATACGGACTA 58.200 37.037 0.00 0.00 46.36 2.59
805 808 7.509659 AGTCCTTTAGATATTCCAATACGGACT 59.490 37.037 0.00 0.00 46.36 3.85
806 809 7.668492 AGTCCTTTAGATATTCCAATACGGAC 58.332 38.462 0.00 0.00 46.36 4.79
807 810 7.850935 AGTCCTTTAGATATTCCAATACGGA 57.149 36.000 0.00 0.00 44.40 4.69
808 811 7.931948 ACAAGTCCTTTAGATATTCCAATACGG 59.068 37.037 0.00 0.00 0.00 4.02
809 812 8.888579 ACAAGTCCTTTAGATATTCCAATACG 57.111 34.615 0.00 0.00 0.00 3.06
820 823 9.379791 CCGTTTCTAAATACAAGTCCTTTAGAT 57.620 33.333 13.87 0.00 39.75 1.98
821 824 8.587608 TCCGTTTCTAAATACAAGTCCTTTAGA 58.412 33.333 11.06 11.06 38.85 2.10
822 825 8.767478 TCCGTTTCTAAATACAAGTCCTTTAG 57.233 34.615 8.05 8.05 35.00 1.85
823 826 7.820872 CCTCCGTTTCTAAATACAAGTCCTTTA 59.179 37.037 0.00 0.00 0.00 1.85
824 827 6.653740 CCTCCGTTTCTAAATACAAGTCCTTT 59.346 38.462 0.00 0.00 0.00 3.11
825 828 6.171213 CCTCCGTTTCTAAATACAAGTCCTT 58.829 40.000 0.00 0.00 0.00 3.36
826 829 5.338137 CCCTCCGTTTCTAAATACAAGTCCT 60.338 44.000 0.00 0.00 0.00 3.85
827 830 4.874396 CCCTCCGTTTCTAAATACAAGTCC 59.126 45.833 0.00 0.00 0.00 3.85
828 831 5.727434 TCCCTCCGTTTCTAAATACAAGTC 58.273 41.667 0.00 0.00 0.00 3.01
829 832 5.247792 ACTCCCTCCGTTTCTAAATACAAGT 59.752 40.000 0.00 0.00 0.00 3.16
830 833 5.731591 ACTCCCTCCGTTTCTAAATACAAG 58.268 41.667 0.00 0.00 0.00 3.16
831 834 5.750352 ACTCCCTCCGTTTCTAAATACAA 57.250 39.130 0.00 0.00 0.00 2.41
832 835 6.855763 TTACTCCCTCCGTTTCTAAATACA 57.144 37.500 0.00 0.00 0.00 2.29
833 836 9.993454 ATTATTACTCCCTCCGTTTCTAAATAC 57.007 33.333 0.00 0.00 0.00 1.89
835 838 8.935741 AGATTATTACTCCCTCCGTTTCTAAAT 58.064 33.333 0.00 0.00 0.00 1.40
836 839 8.315220 AGATTATTACTCCCTCCGTTTCTAAA 57.685 34.615 0.00 0.00 0.00 1.85
837 840 7.909485 AGATTATTACTCCCTCCGTTTCTAA 57.091 36.000 0.00 0.00 0.00 2.10
838 841 7.909485 AAGATTATTACTCCCTCCGTTTCTA 57.091 36.000 0.00 0.00 0.00 2.10
839 842 6.809976 AAGATTATTACTCCCTCCGTTTCT 57.190 37.500 0.00 0.00 0.00 2.52
840 843 7.678927 GCAAAAGATTATTACTCCCTCCGTTTC 60.679 40.741 0.00 0.00 0.00 2.78
841 844 6.095021 GCAAAAGATTATTACTCCCTCCGTTT 59.905 38.462 0.00 0.00 0.00 3.60
842 845 5.589050 GCAAAAGATTATTACTCCCTCCGTT 59.411 40.000 0.00 0.00 0.00 4.44
843 846 5.123936 GCAAAAGATTATTACTCCCTCCGT 58.876 41.667 0.00 0.00 0.00 4.69
844 847 4.211374 CGCAAAAGATTATTACTCCCTCCG 59.789 45.833 0.00 0.00 0.00 4.63
845 848 4.023963 GCGCAAAAGATTATTACTCCCTCC 60.024 45.833 0.30 0.00 0.00 4.30
846 849 4.023963 GGCGCAAAAGATTATTACTCCCTC 60.024 45.833 10.83 0.00 0.00 4.30
847 850 3.883489 GGCGCAAAAGATTATTACTCCCT 59.117 43.478 10.83 0.00 0.00 4.20
848 851 3.303791 CGGCGCAAAAGATTATTACTCCC 60.304 47.826 10.83 0.00 0.00 4.30
849 852 3.558418 TCGGCGCAAAAGATTATTACTCC 59.442 43.478 10.83 0.00 0.00 3.85
850 853 4.789095 TCGGCGCAAAAGATTATTACTC 57.211 40.909 10.83 0.00 0.00 2.59
851 854 5.751243 AATCGGCGCAAAAGATTATTACT 57.249 34.783 10.83 0.00 33.37 2.24
852 855 6.086371 GCTAAATCGGCGCAAAAGATTATTAC 59.914 38.462 10.83 2.53 33.94 1.89
853 856 6.017440 AGCTAAATCGGCGCAAAAGATTATTA 60.017 34.615 10.83 4.45 33.94 0.98
854 857 4.976116 GCTAAATCGGCGCAAAAGATTATT 59.024 37.500 10.83 3.53 33.94 1.40
855 858 4.275936 AGCTAAATCGGCGCAAAAGATTAT 59.724 37.500 10.83 7.99 33.94 1.28
1021 1204 2.278206 CTCGTCGTCGGCATCCAG 60.278 66.667 1.55 0.00 37.69 3.86
1062 1245 8.184192 CGAAAGTGGTATCTAATCTGCAAAAAT 58.816 33.333 0.00 0.00 0.00 1.82
1063 1246 7.174253 ACGAAAGTGGTATCTAATCTGCAAAAA 59.826 33.333 0.00 0.00 46.97 1.94
1064 1247 6.653320 ACGAAAGTGGTATCTAATCTGCAAAA 59.347 34.615 0.00 0.00 46.97 2.44
1065 1248 6.170506 ACGAAAGTGGTATCTAATCTGCAAA 58.829 36.000 0.00 0.00 46.97 3.68
1066 1249 5.730550 ACGAAAGTGGTATCTAATCTGCAA 58.269 37.500 0.00 0.00 46.97 4.08
1067 1250 5.339008 ACGAAAGTGGTATCTAATCTGCA 57.661 39.130 0.00 0.00 46.97 4.41
1113 1306 2.496470 AGGATCGACTGACCAGTTAACC 59.504 50.000 0.88 4.79 42.66 2.85
1181 1374 6.282199 ACTCCATATGTCGTCTACTTTTGT 57.718 37.500 1.24 0.00 0.00 2.83
1205 1398 2.369203 TGTTCCGTCTGGTGTAAATCCA 59.631 45.455 0.00 0.00 36.30 3.41
1230 1423 2.557056 TCCTCACACTTCTTCTGGTACG 59.443 50.000 0.00 0.00 0.00 3.67
1325 1518 3.956199 CAAAAGCCCCTCATGACACATAT 59.044 43.478 0.00 0.00 0.00 1.78
1334 1527 1.610379 GGTGGCAAAAGCCCCTCAT 60.610 57.895 3.77 0.00 0.00 2.90
1532 1725 0.585357 AATGCATCGCGAAGATCTGC 59.415 50.000 21.43 21.43 37.52 4.26
1541 1734 3.722957 CGGAGATTGATAAATGCATCGCG 60.723 47.826 0.00 0.00 0.00 5.87
1662 1855 4.159557 ACCTGGTCAACCATAAAAGCATT 58.840 39.130 1.58 0.00 46.46 3.56
1733 1927 7.651304 CACTGTTTGCATCCAGTATTGTTTTTA 59.349 33.333 15.90 0.00 39.83 1.52
1734 1928 6.479660 CACTGTTTGCATCCAGTATTGTTTTT 59.520 34.615 15.90 0.00 39.83 1.94
1735 1929 5.984926 CACTGTTTGCATCCAGTATTGTTTT 59.015 36.000 15.90 0.00 39.83 2.43
1736 1930 5.531634 CACTGTTTGCATCCAGTATTGTTT 58.468 37.500 15.90 0.00 39.83 2.83
1737 1931 5.125100 CACTGTTTGCATCCAGTATTGTT 57.875 39.130 15.90 0.00 39.83 2.83
1738 1932 4.771590 CACTGTTTGCATCCAGTATTGT 57.228 40.909 15.90 0.00 39.83 2.71
1751 1945 5.521010 ACAAAAATCTCACATGCACTGTTTG 59.479 36.000 0.00 0.00 35.29 2.93
1752 1946 5.663456 ACAAAAATCTCACATGCACTGTTT 58.337 33.333 0.00 0.00 35.29 2.83
1753 1947 5.266733 ACAAAAATCTCACATGCACTGTT 57.733 34.783 0.00 0.00 35.29 3.16
1754 1948 4.555313 CGACAAAAATCTCACATGCACTGT 60.555 41.667 0.00 0.00 39.20 3.55
1755 1949 3.910170 CGACAAAAATCTCACATGCACTG 59.090 43.478 0.00 0.00 0.00 3.66
1779 1973 5.014123 TCCAACCAGGTAATGAAGAATCAGT 59.986 40.000 0.00 0.00 37.59 3.41
1795 1989 4.301072 TCCTTTTAGTGGATCCAACCAG 57.699 45.455 18.20 8.25 40.85 4.00
1821 2015 5.424121 AATGGAGAACTAAATGCATACGC 57.576 39.130 0.00 0.00 39.24 4.42
1822 2016 7.641411 CAGAAAATGGAGAACTAAATGCATACG 59.359 37.037 0.00 0.00 0.00 3.06
1882 2076 8.482128 AGGGATAACAAAAAGAACAAATCACAA 58.518 29.630 0.00 0.00 0.00 3.33
1906 2100 6.092748 CCTTTTTGTCGACCATAATGAAAGG 58.907 40.000 14.12 13.22 35.98 3.11
1907 2101 6.092748 CCCTTTTTGTCGACCATAATGAAAG 58.907 40.000 14.12 8.24 0.00 2.62
1909 2103 4.082463 GCCCTTTTTGTCGACCATAATGAA 60.082 41.667 14.12 0.00 0.00 2.57
1913 2107 2.164338 GGCCCTTTTTGTCGACCATAA 58.836 47.619 14.12 2.61 0.00 1.90
1915 2109 0.178975 TGGCCCTTTTTGTCGACCAT 60.179 50.000 14.12 0.00 0.00 3.55
2236 2431 8.239314 AGTTTCATGTGCTATTGATGTTACAAG 58.761 33.333 0.00 0.00 33.22 3.16
2237 2432 8.109705 AGTTTCATGTGCTATTGATGTTACAA 57.890 30.769 0.00 0.00 0.00 2.41
2238 2433 7.686438 AGTTTCATGTGCTATTGATGTTACA 57.314 32.000 0.00 0.00 0.00 2.41
2239 2434 8.883731 ACTAGTTTCATGTGCTATTGATGTTAC 58.116 33.333 0.00 0.00 0.00 2.50
2240 2435 9.098355 GACTAGTTTCATGTGCTATTGATGTTA 57.902 33.333 0.00 0.00 0.00 2.41
2241 2436 7.607607 TGACTAGTTTCATGTGCTATTGATGTT 59.392 33.333 0.00 0.00 0.00 2.71
2242 2437 7.105588 TGACTAGTTTCATGTGCTATTGATGT 58.894 34.615 0.00 0.00 0.00 3.06
2402 2598 9.521841 CTCCATTCACCTGTATTACTATCTCTA 57.478 37.037 0.00 0.00 0.00 2.43
2438 2634 2.759973 TGTGCCCGGGTGCAAAAA 60.760 55.556 24.63 1.08 44.11 1.94
2439 2635 3.222855 CTGTGCCCGGGTGCAAAA 61.223 61.111 24.63 5.79 44.11 2.44
2440 2636 4.514585 ACTGTGCCCGGGTGCAAA 62.515 61.111 24.63 9.05 44.11 3.68
2561 2759 6.183360 GGAAGGCTGATTAACCTGTACTATGA 60.183 42.308 0.00 0.00 36.07 2.15
2579 2777 0.918310 ATGGGCAAGAGAGGAAGGCT 60.918 55.000 0.00 0.00 0.00 4.58
2596 2794 2.038659 GAGGTGAGAGAGAAGGGGATG 58.961 57.143 0.00 0.00 0.00 3.51
2711 2909 1.400142 CAAAGACACAAACAGCCGTGA 59.600 47.619 0.00 0.00 36.91 4.35
2722 2920 2.297701 GGAGCAAACCTCAAAGACACA 58.702 47.619 0.00 0.00 42.62 3.72
2780 2978 2.368105 GGACGATCTATGCAGCGCG 61.368 63.158 0.00 0.00 0.00 6.86
2797 2995 2.122783 ACATACACATTGGGTTCCGG 57.877 50.000 0.00 0.00 0.00 5.14
2862 3060 5.677319 TTGAGATAGGTAAACAGTGGGAG 57.323 43.478 0.00 0.00 0.00 4.30
2873 3071 3.118884 GGACTTGCGGTTTGAGATAGGTA 60.119 47.826 0.00 0.00 0.00 3.08
3035 3233 4.853924 ATGTTTGAAAGTACAAGCCAGG 57.146 40.909 0.00 0.00 31.71 4.45
3527 3885 4.672587 TCCATTCCCAGAGAACTTATCG 57.327 45.455 0.00 0.00 37.29 2.92
3596 3954 8.726870 ATGATTCCTCCAATTTTAAGCAAATG 57.273 30.769 0.00 0.00 35.09 2.32
3680 4038 3.653539 AACTGCCCGTAATTCAAAACC 57.346 42.857 0.00 0.00 0.00 3.27
3686 4044 2.161609 CACCTCAAACTGCCCGTAATTC 59.838 50.000 0.00 0.00 0.00 2.17
3737 4095 0.323178 CTTCAGGTCAGCCAGCCATT 60.323 55.000 0.00 0.00 37.19 3.16
3750 4108 3.378112 TGTCTTGTTCAGTTTGCTTCAGG 59.622 43.478 0.00 0.00 0.00 3.86
3751 4109 4.621068 TGTCTTGTTCAGTTTGCTTCAG 57.379 40.909 0.00 0.00 0.00 3.02
3752 4110 5.588246 TGTATGTCTTGTTCAGTTTGCTTCA 59.412 36.000 0.00 0.00 0.00 3.02
3753 4111 6.060028 TGTATGTCTTGTTCAGTTTGCTTC 57.940 37.500 0.00 0.00 0.00 3.86
3758 4118 6.823689 ACAGAACTGTATGTCTTGTTCAGTTT 59.176 34.615 5.62 0.04 45.30 2.66
3776 4136 9.530633 GATAAAGAACACGGATATTACAGAACT 57.469 33.333 0.00 0.00 0.00 3.01
3824 4184 8.204160 GCCATGCATAGACCATGTACTATATTA 58.796 37.037 0.00 1.37 38.67 0.98
3825 4185 7.050377 GCCATGCATAGACCATGTACTATATT 58.950 38.462 0.00 0.00 38.67 1.28
3826 4186 6.385176 AGCCATGCATAGACCATGTACTATAT 59.615 38.462 0.00 0.00 38.67 0.86
3827 4187 5.721480 AGCCATGCATAGACCATGTACTATA 59.279 40.000 0.00 0.00 38.67 1.31
3828 4188 4.533707 AGCCATGCATAGACCATGTACTAT 59.466 41.667 0.00 0.00 38.67 2.12
3829 4189 3.903714 AGCCATGCATAGACCATGTACTA 59.096 43.478 0.00 0.00 38.67 1.82
3830 4190 2.707791 AGCCATGCATAGACCATGTACT 59.292 45.455 0.00 0.00 38.67 2.73
3831 4191 3.131709 AGCCATGCATAGACCATGTAC 57.868 47.619 0.00 0.00 38.67 2.90
3832 4192 3.261643 CCTAGCCATGCATAGACCATGTA 59.738 47.826 0.00 0.00 38.67 2.29
3833 4193 2.039480 CCTAGCCATGCATAGACCATGT 59.961 50.000 0.00 0.00 38.67 3.21
3834 4194 2.708051 CCTAGCCATGCATAGACCATG 58.292 52.381 0.00 0.00 39.74 3.66
3835 4195 1.004044 GCCTAGCCATGCATAGACCAT 59.996 52.381 0.00 0.00 0.00 3.55
3836 4196 0.397941 GCCTAGCCATGCATAGACCA 59.602 55.000 0.00 0.00 0.00 4.02
3837 4197 0.671781 CGCCTAGCCATGCATAGACC 60.672 60.000 0.00 0.00 0.00 3.85
3838 4198 0.671781 CCGCCTAGCCATGCATAGAC 60.672 60.000 0.00 0.00 0.00 2.59
3839 4199 1.673477 CCGCCTAGCCATGCATAGA 59.327 57.895 0.00 0.00 0.00 1.98
3840 4200 2.037136 GCCGCCTAGCCATGCATAG 61.037 63.158 0.00 0.00 0.00 2.23
3841 4201 2.032528 GCCGCCTAGCCATGCATA 59.967 61.111 0.00 0.00 0.00 3.14
3866 4226 2.279120 CATGCGGAGGAGCGTCTC 60.279 66.667 1.44 1.44 40.67 3.36
3867 4227 2.290122 CTTCATGCGGAGGAGCGTCT 62.290 60.000 0.00 0.00 40.67 4.18
3868 4228 1.880340 CTTCATGCGGAGGAGCGTC 60.880 63.158 0.00 0.00 40.67 5.19
3869 4229 2.185350 CTTCATGCGGAGGAGCGT 59.815 61.111 0.00 0.00 40.67 5.07
3870 4230 3.267860 GCTTCATGCGGAGGAGCG 61.268 66.667 0.00 0.00 40.67 5.03
3871 4231 2.899339 GGCTTCATGCGGAGGAGC 60.899 66.667 4.89 4.89 44.05 4.70
3872 4232 2.587194 CGGCTTCATGCGGAGGAG 60.587 66.667 0.00 0.00 43.58 3.69
3873 4233 4.161295 CCGGCTTCATGCGGAGGA 62.161 66.667 3.65 0.00 43.58 3.71
3874 4234 4.161295 TCCGGCTTCATGCGGAGG 62.161 66.667 7.95 0.00 43.58 4.30
3875 4235 2.587194 CTCCGGCTTCATGCGGAG 60.587 66.667 20.36 20.36 46.89 4.63
3876 4236 4.838152 GCTCCGGCTTCATGCGGA 62.838 66.667 11.06 11.06 43.58 5.54
3890 4250 3.775654 CAGAGGGGACACGGGCTC 61.776 72.222 0.00 0.00 0.00 4.70
3893 4253 3.775654 GAGCAGAGGGGACACGGG 61.776 72.222 0.00 0.00 0.00 5.28
3894 4254 2.681778 AGAGCAGAGGGGACACGG 60.682 66.667 0.00 0.00 0.00 4.94
3895 4255 2.716017 GGAGAGCAGAGGGGACACG 61.716 68.421 0.00 0.00 0.00 4.49
3896 4256 2.363172 GGGAGAGCAGAGGGGACAC 61.363 68.421 0.00 0.00 0.00 3.67
3897 4257 2.039624 GGGAGAGCAGAGGGGACA 59.960 66.667 0.00 0.00 0.00 4.02
3898 4258 2.766229 GGGGAGAGCAGAGGGGAC 60.766 72.222 0.00 0.00 0.00 4.46
3899 4259 2.571816 AAGGGGAGAGCAGAGGGGA 61.572 63.158 0.00 0.00 0.00 4.81
3900 4260 2.041928 AAGGGGAGAGCAGAGGGG 59.958 66.667 0.00 0.00 0.00 4.79
3901 4261 2.373707 CCAAGGGGAGAGCAGAGGG 61.374 68.421 0.00 0.00 35.59 4.30
3902 4262 3.041469 GCCAAGGGGAGAGCAGAGG 62.041 68.421 0.00 0.00 35.59 3.69
3903 4263 2.588989 GCCAAGGGGAGAGCAGAG 59.411 66.667 0.00 0.00 35.59 3.35
3904 4264 3.011517 GGCCAAGGGGAGAGCAGA 61.012 66.667 0.00 0.00 35.59 4.26
3905 4265 4.120755 GGGCCAAGGGGAGAGCAG 62.121 72.222 4.39 0.00 35.59 4.24
3906 4266 2.781258 TTAGGGCCAAGGGGAGAGCA 62.781 60.000 6.18 0.00 35.59 4.26
3907 4267 2.001269 TTAGGGCCAAGGGGAGAGC 61.001 63.158 6.18 0.00 35.59 4.09
3908 4268 1.915983 GTTAGGGCCAAGGGGAGAG 59.084 63.158 6.18 0.00 35.59 3.20
3909 4269 1.993391 CGTTAGGGCCAAGGGGAGA 60.993 63.158 6.18 0.00 35.59 3.71
3910 4270 1.559065 TTCGTTAGGGCCAAGGGGAG 61.559 60.000 6.18 0.00 35.59 4.30
3911 4271 0.917333 ATTCGTTAGGGCCAAGGGGA 60.917 55.000 6.18 0.00 35.59 4.81
3912 4272 0.033503 AATTCGTTAGGGCCAAGGGG 60.034 55.000 6.18 0.00 37.18 4.79
3913 4273 1.476488 CAAATTCGTTAGGGCCAAGGG 59.524 52.381 6.18 0.00 0.00 3.95
3914 4274 2.442413 TCAAATTCGTTAGGGCCAAGG 58.558 47.619 6.18 4.20 0.00 3.61
3915 4275 4.513198 TTTCAAATTCGTTAGGGCCAAG 57.487 40.909 6.18 0.00 0.00 3.61
3916 4276 4.939052 TTTTCAAATTCGTTAGGGCCAA 57.061 36.364 6.18 0.00 0.00 4.52
3917 4277 4.939052 TTTTTCAAATTCGTTAGGGCCA 57.061 36.364 6.18 0.00 0.00 5.36
4032 4392 8.802856 CGTGAATTCTTTTGTATTTTGTGAACA 58.197 29.630 7.05 0.00 0.00 3.18
4033 4393 9.015577 TCGTGAATTCTTTTGTATTTTGTGAAC 57.984 29.630 7.05 0.00 0.00 3.18
4034 4394 9.574458 TTCGTGAATTCTTTTGTATTTTGTGAA 57.426 25.926 7.05 0.00 0.00 3.18
4035 4395 9.574458 TTTCGTGAATTCTTTTGTATTTTGTGA 57.426 25.926 7.05 0.00 0.00 3.58
4107 4467 2.536761 ACGTCCTTTCAATCCGTGAA 57.463 45.000 0.00 0.00 44.74 3.18
4108 4468 2.536761 AACGTCCTTTCAATCCGTGA 57.463 45.000 0.00 0.00 0.00 4.35
4109 4469 2.289547 ACAAACGTCCTTTCAATCCGTG 59.710 45.455 0.00 0.00 0.00 4.94
4110 4470 2.289547 CACAAACGTCCTTTCAATCCGT 59.710 45.455 0.00 0.00 0.00 4.69
4111 4471 2.350388 CCACAAACGTCCTTTCAATCCG 60.350 50.000 0.00 0.00 0.00 4.18
4112 4472 2.882137 TCCACAAACGTCCTTTCAATCC 59.118 45.455 0.00 0.00 0.00 3.01
4113 4473 4.561735 TTCCACAAACGTCCTTTCAATC 57.438 40.909 0.00 0.00 0.00 2.67
4114 4474 4.582656 TCATTCCACAAACGTCCTTTCAAT 59.417 37.500 0.00 0.00 0.00 2.57
4115 4475 3.948473 TCATTCCACAAACGTCCTTTCAA 59.052 39.130 0.00 0.00 0.00 2.69
4116 4476 3.546724 TCATTCCACAAACGTCCTTTCA 58.453 40.909 0.00 0.00 0.00 2.69
4117 4477 4.561735 TTCATTCCACAAACGTCCTTTC 57.438 40.909 0.00 0.00 0.00 2.62
4118 4478 4.993029 TTTCATTCCACAAACGTCCTTT 57.007 36.364 0.00 0.00 0.00 3.11
4119 4479 4.158764 TGTTTTCATTCCACAAACGTCCTT 59.841 37.500 0.00 0.00 33.81 3.36
4120 4480 3.697045 TGTTTTCATTCCACAAACGTCCT 59.303 39.130 0.00 0.00 33.81 3.85
4121 4481 3.794564 GTGTTTTCATTCCACAAACGTCC 59.205 43.478 0.00 0.00 33.81 4.79
4122 4482 4.416620 TGTGTTTTCATTCCACAAACGTC 58.583 39.130 0.00 0.00 36.25 4.34
4123 4483 4.442375 TGTGTTTTCATTCCACAAACGT 57.558 36.364 0.00 0.00 36.25 3.99
4124 4484 5.964887 AATGTGTTTTCATTCCACAAACG 57.035 34.783 0.00 0.00 41.91 3.60
4125 4485 9.039870 TCATTAATGTGTTTTCATTCCACAAAC 57.960 29.630 14.97 0.00 41.91 2.93
4126 4486 9.605275 TTCATTAATGTGTTTTCATTCCACAAA 57.395 25.926 14.97 0.00 41.91 2.83
4127 4487 9.605275 TTTCATTAATGTGTTTTCATTCCACAA 57.395 25.926 14.97 0.00 41.91 3.33
4128 4488 9.775854 ATTTCATTAATGTGTTTTCATTCCACA 57.224 25.926 14.97 0.00 42.70 4.17
4157 4517 5.000012 TGTTCAAATAGGTGTGCGTTTTT 58.000 34.783 0.00 0.00 0.00 1.94
4158 4518 4.640789 TGTTCAAATAGGTGTGCGTTTT 57.359 36.364 0.00 0.00 0.00 2.43
4159 4519 4.640789 TTGTTCAAATAGGTGTGCGTTT 57.359 36.364 0.00 0.00 0.00 3.60
4160 4520 4.640789 TTTGTTCAAATAGGTGTGCGTT 57.359 36.364 0.00 0.00 0.00 4.84
4161 4521 4.640789 TTTTGTTCAAATAGGTGTGCGT 57.359 36.364 0.00 0.00 0.00 5.24
4162 4522 7.593273 TCTTAATTTTGTTCAAATAGGTGTGCG 59.407 33.333 0.00 0.00 33.60 5.34
4163 4523 8.810652 TCTTAATTTTGTTCAAATAGGTGTGC 57.189 30.769 0.00 0.00 33.60 4.57
4172 4532 9.483062 CGCAAACATTTCTTAATTTTGTTCAAA 57.517 25.926 0.00 0.00 31.61 2.69
4173 4533 8.873830 TCGCAAACATTTCTTAATTTTGTTCAA 58.126 25.926 0.00 0.00 31.61 2.69
4174 4534 8.412608 TCGCAAACATTTCTTAATTTTGTTCA 57.587 26.923 0.00 0.00 31.61 3.18
4175 4535 9.862585 ATTCGCAAACATTTCTTAATTTTGTTC 57.137 25.926 0.00 0.00 31.61 3.18
4179 4539 9.662545 CCAAATTCGCAAACATTTCTTAATTTT 57.337 25.926 0.00 0.00 0.00 1.82
4180 4540 9.050601 TCCAAATTCGCAAACATTTCTTAATTT 57.949 25.926 0.00 0.00 0.00 1.82
4181 4541 8.600449 TCCAAATTCGCAAACATTTCTTAATT 57.400 26.923 0.00 0.00 0.00 1.40
4182 4542 8.600449 TTCCAAATTCGCAAACATTTCTTAAT 57.400 26.923 0.00 0.00 0.00 1.40
4183 4543 8.425577 TTTCCAAATTCGCAAACATTTCTTAA 57.574 26.923 0.00 0.00 0.00 1.85
4184 4544 8.425577 TTTTCCAAATTCGCAAACATTTCTTA 57.574 26.923 0.00 0.00 0.00 2.10
4185 4545 6.917217 TTTCCAAATTCGCAAACATTTCTT 57.083 29.167 0.00 0.00 0.00 2.52
4186 4546 6.917217 TTTTCCAAATTCGCAAACATTTCT 57.083 29.167 0.00 0.00 0.00 2.52
4268 4628 9.737427 TCGATGAACTTTTTAGCATTTGTTAAA 57.263 25.926 0.00 0.00 0.00 1.52
4269 4629 9.906660 ATCGATGAACTTTTTAGCATTTGTTAA 57.093 25.926 0.00 0.00 0.00 2.01
4270 4630 9.906660 AATCGATGAACTTTTTAGCATTTGTTA 57.093 25.926 0.00 0.00 0.00 2.41
4271 4631 8.816640 AATCGATGAACTTTTTAGCATTTGTT 57.183 26.923 0.00 0.00 0.00 2.83


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.