Multiple sequence alignment - TraesCS2A01G192400

Loading Multiple Alignment...

Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS2A01G192400 chr2A 100.000 5073 0 0 1 5073 159882955 159877883 0.000000e+00 9369.0
1 TraesCS2A01G192400 chr2A 98.876 89 1 0 1 89 536644063 536643975 5.260000e-35 159.0
2 TraesCS2A01G192400 chr2D 94.323 4192 149 24 948 5070 141471971 141476142 0.000000e+00 6340.0
3 TraesCS2A01G192400 chr2D 89.362 329 33 2 88 414 499926968 499926640 3.650000e-111 412.0
4 TraesCS2A01G192400 chr2D 84.420 276 12 2 4826 5070 553366191 553365916 5.070000e-60 243.0
5 TraesCS2A01G192400 chr2B 92.324 2762 140 29 2348 5070 199023021 199020293 0.000000e+00 3860.0
6 TraesCS2A01G192400 chr2B 90.462 1321 78 22 1041 2350 199024329 199023046 0.000000e+00 1698.0
7 TraesCS2A01G192400 chr2B 91.525 59 5 0 948 1006 199024386 199024328 1.170000e-11 82.4
8 TraesCS2A01G192400 chr4B 87.173 421 53 1 412 831 192697566 192697986 1.280000e-130 477.0
9 TraesCS2A01G192400 chr4B 86.730 422 55 1 411 831 192693913 192694334 7.690000e-128 468.0
10 TraesCS2A01G192400 chr4B 81.884 276 19 8 4826 5070 279320433 279320708 2.390000e-48 204.0
11 TraesCS2A01G192400 chr3D 86.085 424 58 1 421 843 98786245 98786668 5.990000e-124 455.0
12 TraesCS2A01G192400 chr3D 90.154 325 31 1 88 411 427823477 427823153 6.070000e-114 422.0
13 TraesCS2A01G192400 chr3D 89.538 325 31 3 88 411 213107357 213107035 4.730000e-110 409.0
14 TraesCS2A01G192400 chr1D 86.364 418 56 1 415 831 150907906 150908323 5.990000e-124 455.0
15 TraesCS2A01G192400 chr1D 89.877 326 30 3 88 411 312986943 312987267 2.830000e-112 416.0
16 TraesCS2A01G192400 chr6A 85.781 429 58 2 415 842 197773323 197772897 7.750000e-123 451.0
17 TraesCS2A01G192400 chr6A 98.851 87 1 0 1 87 48535723 48535809 6.800000e-34 156.0
18 TraesCS2A01G192400 chr6A 98.851 87 1 0 1 87 497415115 497415029 6.800000e-34 156.0
19 TraesCS2A01G192400 chr5A 86.408 412 55 1 421 831 666298419 666298008 2.790000e-122 449.0
20 TraesCS2A01G192400 chr5A 84.598 435 65 2 411 843 68971064 68970630 1.010000e-116 431.0
21 TraesCS2A01G192400 chr5A 89.602 327 30 3 88 412 140586911 140587235 3.650000e-111 412.0
22 TraesCS2A01G192400 chr5A 82.971 276 16 3 4826 5070 19264853 19264578 2.380000e-53 220.0
23 TraesCS2A01G192400 chr5A 100.000 87 0 0 1 87 561380462 561380548 1.460000e-35 161.0
24 TraesCS2A01G192400 chr5A 98.851 87 1 0 1 87 231539565 231539651 6.800000e-34 156.0
25 TraesCS2A01G192400 chr5A 98.851 87 1 0 1 87 237099216 237099302 6.800000e-34 156.0
26 TraesCS2A01G192400 chr7D 85.748 421 58 2 412 831 424716415 424716834 1.300000e-120 444.0
27 TraesCS2A01G192400 chr7D 90.154 325 30 2 88 411 582652448 582652125 6.070000e-114 422.0
28 TraesCS2A01G192400 chr5D 90.462 325 28 3 90 412 500533568 500533245 4.690000e-115 425.0
29 TraesCS2A01G192400 chr5D 83.268 257 11 4 4846 5070 485907524 485907268 1.850000e-49 207.0
30 TraesCS2A01G192400 chr4D 90.214 327 28 4 88 411 355791094 355791419 1.690000e-114 424.0
31 TraesCS2A01G192400 chr4D 88.822 331 35 2 88 417 106895141 106894812 6.120000e-109 405.0
32 TraesCS2A01G192400 chr4D 93.407 91 6 0 4980 5070 346188487 346188577 8.860000e-28 135.0
33 TraesCS2A01G192400 chr4A 84.332 434 66 2 412 843 731672280 731672713 1.690000e-114 424.0
34 TraesCS2A01G192400 chr1A 84.838 277 10 10 4826 5070 451521516 451521792 3.030000e-62 250.0
35 TraesCS2A01G192400 chr1A 83.636 275 15 11 4826 5070 552087274 552087000 1.100000e-56 231.0
36 TraesCS2A01G192400 chr1A 98.851 87 1 0 1 87 91695065 91694979 6.800000e-34 156.0
37 TraesCS2A01G192400 chrUn 84.116 277 12 4 4826 5070 22375513 22375789 6.560000e-59 239.0
38 TraesCS2A01G192400 chr6D 84.058 276 13 2 4826 5070 19564535 19564810 2.360000e-58 237.0
39 TraesCS2A01G192400 chr7A 83.150 273 17 10 4826 5070 110399076 110398805 6.610000e-54 222.0
40 TraesCS2A01G192400 chr7A 81.522 276 20 3 4826 5070 606317396 606317671 1.110000e-46 198.0
41 TraesCS2A01G192400 chr7A 91.379 116 8 2 1 115 349087968 349088082 1.890000e-34 158.0
42 TraesCS2A01G192400 chr3B 96.842 95 3 0 1 95 357553733 357553639 5.260000e-35 159.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS2A01G192400 chr2A 159877883 159882955 5072 True 9369.000000 9369 100.0000 1 5073 1 chr2A.!!$R1 5072
1 TraesCS2A01G192400 chr2D 141471971 141476142 4171 False 6340.000000 6340 94.3230 948 5070 1 chr2D.!!$F1 4122
2 TraesCS2A01G192400 chr2B 199020293 199024386 4093 True 1880.133333 3860 91.4370 948 5070 3 chr2B.!!$R1 4122
3 TraesCS2A01G192400 chr4B 192693913 192697986 4073 False 472.500000 477 86.9515 411 831 2 chr4B.!!$F2 420

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
295 296 0.028902 GTTGTCAAACGCTTCCGCTT 59.971 50.000 0.00 0.00 38.22 4.68 F
345 346 0.108186 CCACCTCTCGTTGCTATGCA 60.108 55.000 0.00 0.00 36.47 3.96 F
621 622 0.179067 TGGGGCATCGTTCGGTATTC 60.179 55.000 0.00 0.00 0.00 1.75 F
709 711 0.317103 CGTAGAGAATGAGCGTCCGG 60.317 60.000 0.00 0.00 0.00 5.14 F
714 716 1.000283 GAGAATGAGCGTCCGGATGAT 60.000 52.381 28.06 22.44 0.00 2.45 F
2702 4002 0.593128 AACTTCAGAATGGTGCGTGC 59.407 50.000 0.00 0.00 36.16 5.34 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1736 1782 1.000955 CACCTCAGCTTTACCGACAGT 59.999 52.381 0.00 0.00 0.00 3.55 R
1763 1809 1.488705 AATCCAGGTCCTGCCGTGAA 61.489 55.000 13.99 0.00 43.70 3.18 R
1995 2041 1.864862 CACGAGAACTTGCAGCCTG 59.135 57.895 0.00 0.00 0.00 4.85 R
2702 4002 0.297820 GCAGTATTTCTTCGCGACGG 59.702 55.000 9.15 4.91 0.00 4.79 R
2822 4122 5.734720 GATGAAATCTCAACAGACCCAGTA 58.265 41.667 0.00 0.00 41.17 2.74 R
4212 6031 0.318360 CGCCTGACACGTGTGTTCTA 60.318 55.000 28.82 5.99 45.05 2.10 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
24 25 7.381766 TGAACCATCATGAGATTTACAACAG 57.618 36.000 0.09 0.00 30.20 3.16
25 26 6.942005 TGAACCATCATGAGATTTACAACAGT 59.058 34.615 0.09 0.00 30.20 3.55
26 27 8.100164 TGAACCATCATGAGATTTACAACAGTA 58.900 33.333 0.09 0.00 30.20 2.74
27 28 8.862325 AACCATCATGAGATTTACAACAGTAA 57.138 30.769 0.09 0.00 30.20 2.24
28 29 8.498054 ACCATCATGAGATTTACAACAGTAAG 57.502 34.615 0.09 0.00 30.20 2.34
29 30 8.321353 ACCATCATGAGATTTACAACAGTAAGA 58.679 33.333 0.09 0.00 30.20 2.10
30 31 8.824781 CCATCATGAGATTTACAACAGTAAGAG 58.175 37.037 0.09 0.00 30.20 2.85
31 32 9.376075 CATCATGAGATTTACAACAGTAAGAGT 57.624 33.333 0.09 0.00 30.20 3.24
32 33 8.763049 TCATGAGATTTACAACAGTAAGAGTG 57.237 34.615 0.00 0.00 0.00 3.51
33 34 7.819415 TCATGAGATTTACAACAGTAAGAGTGG 59.181 37.037 0.00 0.00 0.00 4.00
34 35 7.062749 TGAGATTTACAACAGTAAGAGTGGT 57.937 36.000 0.00 0.00 0.00 4.16
35 36 6.929049 TGAGATTTACAACAGTAAGAGTGGTG 59.071 38.462 0.00 0.00 41.88 4.17
36 37 7.062749 AGATTTACAACAGTAAGAGTGGTGA 57.937 36.000 6.35 0.00 38.50 4.02
37 38 6.929606 AGATTTACAACAGTAAGAGTGGTGAC 59.070 38.462 6.35 0.00 38.50 3.67
38 39 3.093717 ACAACAGTAAGAGTGGTGACG 57.906 47.619 6.35 0.00 38.50 4.35
39 40 2.429610 ACAACAGTAAGAGTGGTGACGT 59.570 45.455 6.35 0.00 38.50 4.34
40 41 2.794910 CAACAGTAAGAGTGGTGACGTG 59.205 50.000 0.00 0.00 38.50 4.49
41 42 1.340248 ACAGTAAGAGTGGTGACGTGG 59.660 52.381 0.00 0.00 0.00 4.94
42 43 0.317479 AGTAAGAGTGGTGACGTGGC 59.683 55.000 0.00 0.00 0.00 5.01
43 44 0.032952 GTAAGAGTGGTGACGTGGCA 59.967 55.000 0.00 0.00 0.00 4.92
44 45 0.973632 TAAGAGTGGTGACGTGGCAT 59.026 50.000 0.00 0.00 0.00 4.40
45 46 0.320771 AAGAGTGGTGACGTGGCATC 60.321 55.000 0.00 0.00 0.00 3.91
46 47 1.005037 GAGTGGTGACGTGGCATCA 60.005 57.895 0.00 0.00 0.00 3.07
47 48 0.391661 GAGTGGTGACGTGGCATCAT 60.392 55.000 0.00 0.00 30.53 2.45
48 49 0.036732 AGTGGTGACGTGGCATCATT 59.963 50.000 0.00 0.00 30.53 2.57
49 50 1.277842 AGTGGTGACGTGGCATCATTA 59.722 47.619 0.00 0.00 30.53 1.90
50 51 1.665679 GTGGTGACGTGGCATCATTAG 59.334 52.381 0.00 0.00 30.53 1.73
51 52 0.657840 GGTGACGTGGCATCATTAGC 59.342 55.000 0.00 0.00 0.00 3.09
52 53 1.368641 GTGACGTGGCATCATTAGCA 58.631 50.000 0.00 0.00 0.00 3.49
53 54 1.328680 GTGACGTGGCATCATTAGCAG 59.671 52.381 0.00 0.00 0.00 4.24
54 55 1.206849 TGACGTGGCATCATTAGCAGA 59.793 47.619 0.00 0.00 0.00 4.26
55 56 1.863454 GACGTGGCATCATTAGCAGAG 59.137 52.381 0.00 0.00 0.00 3.35
56 57 1.224075 CGTGGCATCATTAGCAGAGG 58.776 55.000 0.00 0.00 0.00 3.69
57 58 1.473965 CGTGGCATCATTAGCAGAGGT 60.474 52.381 0.00 0.00 0.00 3.85
58 59 2.648059 GTGGCATCATTAGCAGAGGTT 58.352 47.619 0.00 0.00 0.00 3.50
59 60 3.741075 CGTGGCATCATTAGCAGAGGTTA 60.741 47.826 0.00 0.00 0.00 2.85
60 61 3.561725 GTGGCATCATTAGCAGAGGTTAC 59.438 47.826 0.00 0.00 0.00 2.50
61 62 3.455910 TGGCATCATTAGCAGAGGTTACT 59.544 43.478 0.00 0.00 0.00 2.24
62 63 3.812053 GGCATCATTAGCAGAGGTTACTG 59.188 47.826 0.00 0.00 40.43 2.74
63 64 4.446371 GCATCATTAGCAGAGGTTACTGT 58.554 43.478 0.00 0.00 39.73 3.55
64 65 5.453339 GGCATCATTAGCAGAGGTTACTGTA 60.453 44.000 0.00 0.00 39.73 2.74
65 66 5.694006 GCATCATTAGCAGAGGTTACTGTAG 59.306 44.000 0.00 0.00 39.73 2.74
66 67 5.263968 TCATTAGCAGAGGTTACTGTAGC 57.736 43.478 0.00 0.00 39.73 3.58
67 68 4.956700 TCATTAGCAGAGGTTACTGTAGCT 59.043 41.667 1.71 0.00 39.73 3.32
68 69 5.422331 TCATTAGCAGAGGTTACTGTAGCTT 59.578 40.000 0.00 0.00 39.73 3.74
69 70 3.601443 AGCAGAGGTTACTGTAGCTTG 57.399 47.619 0.00 0.74 39.73 4.01
70 71 3.165875 AGCAGAGGTTACTGTAGCTTGA 58.834 45.455 0.00 0.00 39.73 3.02
71 72 3.772025 AGCAGAGGTTACTGTAGCTTGAT 59.228 43.478 0.00 0.00 39.73 2.57
72 73 4.223923 AGCAGAGGTTACTGTAGCTTGATT 59.776 41.667 0.00 0.00 39.73 2.57
73 74 5.422331 AGCAGAGGTTACTGTAGCTTGATTA 59.578 40.000 0.00 0.00 39.73 1.75
74 75 6.098982 AGCAGAGGTTACTGTAGCTTGATTAT 59.901 38.462 0.00 0.00 39.73 1.28
75 76 6.422400 GCAGAGGTTACTGTAGCTTGATTATC 59.578 42.308 0.00 0.00 39.73 1.75
76 77 6.926272 CAGAGGTTACTGTAGCTTGATTATCC 59.074 42.308 0.00 0.00 33.73 2.59
77 78 5.844004 AGGTTACTGTAGCTTGATTATCCG 58.156 41.667 0.00 0.00 0.00 4.18
78 79 4.989168 GGTTACTGTAGCTTGATTATCCGG 59.011 45.833 0.00 0.00 0.00 5.14
79 80 3.753294 ACTGTAGCTTGATTATCCGGG 57.247 47.619 0.00 0.00 0.00 5.73
80 81 2.224305 ACTGTAGCTTGATTATCCGGGC 60.224 50.000 0.00 0.00 0.00 6.13
81 82 1.270094 TGTAGCTTGATTATCCGGGCG 60.270 52.381 0.00 0.00 0.00 6.13
82 83 1.045407 TAGCTTGATTATCCGGGCGT 58.955 50.000 0.00 0.00 0.00 5.68
83 84 0.249911 AGCTTGATTATCCGGGCGTC 60.250 55.000 0.00 0.00 0.00 5.19
84 85 0.531974 GCTTGATTATCCGGGCGTCA 60.532 55.000 0.00 0.00 0.00 4.35
85 86 1.217882 CTTGATTATCCGGGCGTCAC 58.782 55.000 0.00 0.00 0.00 3.67
86 87 0.537653 TTGATTATCCGGGCGTCACA 59.462 50.000 0.00 0.00 0.00 3.58
87 88 0.179094 TGATTATCCGGGCGTCACAC 60.179 55.000 0.00 0.00 0.00 3.82
88 89 0.878961 GATTATCCGGGCGTCACACC 60.879 60.000 0.00 0.00 0.00 4.16
89 90 1.335132 ATTATCCGGGCGTCACACCT 61.335 55.000 0.00 0.00 0.00 4.00
90 91 2.233605 TTATCCGGGCGTCACACCTG 62.234 60.000 0.00 0.00 0.00 4.00
97 98 2.433145 CGTCACACCTGCGCAGAT 60.433 61.111 38.06 21.54 0.00 2.90
98 99 2.447887 CGTCACACCTGCGCAGATC 61.448 63.158 38.06 18.33 0.00 2.75
99 100 1.374631 GTCACACCTGCGCAGATCA 60.375 57.895 38.06 14.16 0.00 2.92
100 101 1.374631 TCACACCTGCGCAGATCAC 60.375 57.895 38.06 0.00 0.00 3.06
101 102 1.375140 CACACCTGCGCAGATCACT 60.375 57.895 38.06 12.69 0.00 3.41
102 103 0.952497 CACACCTGCGCAGATCACTT 60.952 55.000 38.06 13.04 0.00 3.16
103 104 0.671781 ACACCTGCGCAGATCACTTC 60.672 55.000 38.06 0.00 0.00 3.01
104 105 0.671472 CACCTGCGCAGATCACTTCA 60.671 55.000 38.06 0.00 0.00 3.02
105 106 0.671781 ACCTGCGCAGATCACTTCAC 60.672 55.000 38.06 0.00 0.00 3.18
106 107 1.364626 CCTGCGCAGATCACTTCACC 61.365 60.000 38.06 0.00 0.00 4.02
107 108 0.671472 CTGCGCAGATCACTTCACCA 60.671 55.000 33.66 0.00 0.00 4.17
108 109 0.250252 TGCGCAGATCACTTCACCAA 60.250 50.000 5.66 0.00 0.00 3.67
109 110 0.166814 GCGCAGATCACTTCACCAAC 59.833 55.000 0.30 0.00 0.00 3.77
110 111 1.511850 CGCAGATCACTTCACCAACA 58.488 50.000 0.00 0.00 0.00 3.33
111 112 1.195448 CGCAGATCACTTCACCAACAC 59.805 52.381 0.00 0.00 0.00 3.32
112 113 2.498167 GCAGATCACTTCACCAACACT 58.502 47.619 0.00 0.00 0.00 3.55
113 114 2.225019 GCAGATCACTTCACCAACACTG 59.775 50.000 0.00 0.00 0.00 3.66
114 115 3.470709 CAGATCACTTCACCAACACTGT 58.529 45.455 0.00 0.00 0.00 3.55
115 116 3.496130 CAGATCACTTCACCAACACTGTC 59.504 47.826 0.00 0.00 0.00 3.51
116 117 3.134623 AGATCACTTCACCAACACTGTCA 59.865 43.478 0.00 0.00 0.00 3.58
117 118 2.627945 TCACTTCACCAACACTGTCAC 58.372 47.619 0.00 0.00 0.00 3.67
118 119 1.670811 CACTTCACCAACACTGTCACC 59.329 52.381 0.00 0.00 0.00 4.02
119 120 1.280710 ACTTCACCAACACTGTCACCA 59.719 47.619 0.00 0.00 0.00 4.17
120 121 2.092429 ACTTCACCAACACTGTCACCAT 60.092 45.455 0.00 0.00 0.00 3.55
121 122 1.965935 TCACCAACACTGTCACCATG 58.034 50.000 0.00 0.00 0.00 3.66
122 123 0.311790 CACCAACACTGTCACCATGC 59.688 55.000 0.00 0.00 0.00 4.06
123 124 0.823356 ACCAACACTGTCACCATGCC 60.823 55.000 0.00 0.00 0.00 4.40
124 125 1.575922 CAACACTGTCACCATGCCG 59.424 57.895 0.00 0.00 0.00 5.69
125 126 1.148273 AACACTGTCACCATGCCGT 59.852 52.632 0.00 0.00 0.00 5.68
126 127 0.465460 AACACTGTCACCATGCCGTT 60.465 50.000 0.00 0.00 0.00 4.44
127 128 1.165907 ACACTGTCACCATGCCGTTG 61.166 55.000 0.00 0.00 0.00 4.10
128 129 1.148273 ACTGTCACCATGCCGTTGT 59.852 52.632 0.00 0.00 0.00 3.32
129 130 1.165907 ACTGTCACCATGCCGTTGTG 61.166 55.000 0.00 0.00 0.00 3.33
130 131 1.153066 TGTCACCATGCCGTTGTGT 60.153 52.632 0.00 0.00 0.00 3.72
131 132 0.749818 TGTCACCATGCCGTTGTGTT 60.750 50.000 0.00 0.00 0.00 3.32
132 133 0.317770 GTCACCATGCCGTTGTGTTG 60.318 55.000 0.00 0.00 0.00 3.33
133 134 0.464554 TCACCATGCCGTTGTGTTGA 60.465 50.000 0.00 0.00 0.00 3.18
134 135 0.317770 CACCATGCCGTTGTGTTGAC 60.318 55.000 0.00 0.00 0.00 3.18
135 136 1.082169 CCATGCCGTTGTGTTGACG 60.082 57.895 0.00 0.00 40.05 4.35
142 143 1.282817 CGTTGTGTTGACGGAACTCA 58.717 50.000 1.85 1.68 36.50 3.41
143 144 1.864711 CGTTGTGTTGACGGAACTCAT 59.135 47.619 5.51 0.00 37.77 2.90
144 145 2.096909 CGTTGTGTTGACGGAACTCATC 60.097 50.000 5.51 4.74 37.77 2.92
145 146 3.131396 GTTGTGTTGACGGAACTCATCT 58.869 45.455 5.51 0.00 37.77 2.90
146 147 4.304110 GTTGTGTTGACGGAACTCATCTA 58.696 43.478 5.51 0.00 37.77 1.98
147 148 3.909430 TGTGTTGACGGAACTCATCTAC 58.091 45.455 1.85 0.00 34.00 2.59
148 149 3.572682 TGTGTTGACGGAACTCATCTACT 59.427 43.478 1.85 0.00 34.00 2.57
149 150 4.038763 TGTGTTGACGGAACTCATCTACTT 59.961 41.667 1.85 0.00 34.00 2.24
150 151 4.989168 GTGTTGACGGAACTCATCTACTTT 59.011 41.667 1.85 0.00 35.37 2.66
151 152 5.118817 GTGTTGACGGAACTCATCTACTTTC 59.881 44.000 1.85 0.00 35.37 2.62
152 153 5.010719 TGTTGACGGAACTCATCTACTTTCT 59.989 40.000 1.85 0.00 35.37 2.52
153 154 5.312120 TGACGGAACTCATCTACTTTCTC 57.688 43.478 0.00 0.00 0.00 2.87
154 155 4.142665 TGACGGAACTCATCTACTTTCTCG 60.143 45.833 0.00 0.00 0.00 4.04
155 156 4.008330 ACGGAACTCATCTACTTTCTCGA 58.992 43.478 0.00 0.00 0.00 4.04
156 157 4.142643 ACGGAACTCATCTACTTTCTCGAC 60.143 45.833 0.00 0.00 0.00 4.20
157 158 4.142665 CGGAACTCATCTACTTTCTCGACA 60.143 45.833 0.00 0.00 0.00 4.35
158 159 5.096849 GGAACTCATCTACTTTCTCGACAC 58.903 45.833 0.00 0.00 0.00 3.67
159 160 4.705337 ACTCATCTACTTTCTCGACACC 57.295 45.455 0.00 0.00 0.00 4.16
160 161 4.337145 ACTCATCTACTTTCTCGACACCT 58.663 43.478 0.00 0.00 0.00 4.00
161 162 4.767928 ACTCATCTACTTTCTCGACACCTT 59.232 41.667 0.00 0.00 0.00 3.50
162 163 5.944599 ACTCATCTACTTTCTCGACACCTTA 59.055 40.000 0.00 0.00 0.00 2.69
163 164 6.127952 ACTCATCTACTTTCTCGACACCTTAC 60.128 42.308 0.00 0.00 0.00 2.34
164 165 5.944599 TCATCTACTTTCTCGACACCTTACT 59.055 40.000 0.00 0.00 0.00 2.24
165 166 5.624344 TCTACTTTCTCGACACCTTACTG 57.376 43.478 0.00 0.00 0.00 2.74
166 167 3.662247 ACTTTCTCGACACCTTACTGG 57.338 47.619 0.00 0.00 42.93 4.00
167 168 3.228453 ACTTTCTCGACACCTTACTGGA 58.772 45.455 0.00 0.00 39.71 3.86
168 169 3.833070 ACTTTCTCGACACCTTACTGGAT 59.167 43.478 0.00 0.00 39.71 3.41
169 170 4.082136 ACTTTCTCGACACCTTACTGGATC 60.082 45.833 0.00 0.00 39.71 3.36
170 171 3.081710 TCTCGACACCTTACTGGATCA 57.918 47.619 0.00 0.00 39.71 2.92
171 172 3.427573 TCTCGACACCTTACTGGATCAA 58.572 45.455 0.00 0.00 39.71 2.57
172 173 3.444034 TCTCGACACCTTACTGGATCAAG 59.556 47.826 0.00 0.00 39.71 3.02
173 174 3.427573 TCGACACCTTACTGGATCAAGA 58.572 45.455 3.42 0.00 39.71 3.02
174 175 3.830178 TCGACACCTTACTGGATCAAGAA 59.170 43.478 3.42 0.00 39.71 2.52
175 176 4.082190 TCGACACCTTACTGGATCAAGAAG 60.082 45.833 3.42 3.49 39.71 2.85
176 177 4.508662 GACACCTTACTGGATCAAGAAGG 58.491 47.826 19.18 19.18 42.05 3.46
177 178 3.274288 CACCTTACTGGATCAAGAAGGC 58.726 50.000 20.08 0.00 40.34 4.35
178 179 3.054802 CACCTTACTGGATCAAGAAGGCT 60.055 47.826 20.08 10.42 40.34 4.58
179 180 4.162320 CACCTTACTGGATCAAGAAGGCTA 59.838 45.833 20.08 0.00 40.34 3.93
180 181 4.407296 ACCTTACTGGATCAAGAAGGCTAG 59.593 45.833 20.08 0.00 40.34 3.42
181 182 4.202305 CCTTACTGGATCAAGAAGGCTAGG 60.202 50.000 3.42 0.00 38.35 3.02
182 183 2.122768 ACTGGATCAAGAAGGCTAGGG 58.877 52.381 3.42 0.00 0.00 3.53
183 184 0.839946 TGGATCAAGAAGGCTAGGGC 59.160 55.000 0.00 0.00 37.82 5.19
184 185 0.250081 GGATCAAGAAGGCTAGGGCG 60.250 60.000 0.00 0.00 39.81 6.13
185 186 0.466124 GATCAAGAAGGCTAGGGCGT 59.534 55.000 0.00 0.00 39.81 5.68
186 187 0.466124 ATCAAGAAGGCTAGGGCGTC 59.534 55.000 0.00 0.00 39.81 5.19
187 188 0.902984 TCAAGAAGGCTAGGGCGTCA 60.903 55.000 9.21 0.00 38.82 4.35
188 189 0.179000 CAAGAAGGCTAGGGCGTCAT 59.821 55.000 9.21 0.00 38.82 3.06
189 190 0.466124 AAGAAGGCTAGGGCGTCATC 59.534 55.000 9.21 0.00 38.82 2.92
190 191 1.300233 GAAGGCTAGGGCGTCATCG 60.300 63.158 0.00 0.00 36.71 3.84
201 202 2.101575 GTCATCGCGCTGGACGTA 59.898 61.111 10.42 0.00 46.11 3.57
202 203 1.299165 GTCATCGCGCTGGACGTAT 60.299 57.895 10.42 0.00 46.11 3.06
203 204 1.299089 TCATCGCGCTGGACGTATG 60.299 57.895 10.42 1.87 46.11 2.39
204 205 2.658593 ATCGCGCTGGACGTATGC 60.659 61.111 5.56 0.00 46.11 3.14
205 206 3.424639 ATCGCGCTGGACGTATGCA 62.425 57.895 5.56 0.00 46.11 3.96
206 207 3.620428 CGCGCTGGACGTATGCAG 61.620 66.667 5.56 0.00 46.62 4.41
207 208 2.202743 GCGCTGGACGTATGCAGA 60.203 61.111 0.00 0.00 46.84 4.26
208 209 1.809619 GCGCTGGACGTATGCAGAA 60.810 57.895 0.00 0.00 46.84 3.02
209 210 1.999051 CGCTGGACGTATGCAGAAC 59.001 57.895 0.00 0.00 46.84 3.01
210 211 0.458543 CGCTGGACGTATGCAGAACT 60.459 55.000 0.00 0.00 46.84 3.01
211 212 1.281899 GCTGGACGTATGCAGAACTC 58.718 55.000 0.00 0.00 46.84 3.01
212 213 1.550065 CTGGACGTATGCAGAACTCG 58.450 55.000 0.00 0.00 46.84 4.18
213 214 0.172578 TGGACGTATGCAGAACTCGG 59.827 55.000 0.00 0.00 0.00 4.63
214 215 0.454600 GGACGTATGCAGAACTCGGA 59.545 55.000 0.00 0.00 0.00 4.55
215 216 1.534175 GGACGTATGCAGAACTCGGAG 60.534 57.143 2.83 2.83 0.00 4.63
216 217 0.456221 ACGTATGCAGAACTCGGAGG 59.544 55.000 10.23 0.00 0.00 4.30
217 218 0.456221 CGTATGCAGAACTCGGAGGT 59.544 55.000 10.23 1.51 0.00 3.85
218 219 1.799181 CGTATGCAGAACTCGGAGGTG 60.799 57.143 10.23 5.07 0.00 4.00
219 220 1.204941 GTATGCAGAACTCGGAGGTGT 59.795 52.381 10.23 0.00 0.00 4.16
220 221 0.247736 ATGCAGAACTCGGAGGTGTC 59.752 55.000 10.23 3.93 0.00 3.67
221 222 1.444553 GCAGAACTCGGAGGTGTCG 60.445 63.158 10.23 0.00 0.00 4.35
222 223 1.957562 CAGAACTCGGAGGTGTCGT 59.042 57.895 10.23 0.00 0.00 4.34
223 224 1.162698 CAGAACTCGGAGGTGTCGTA 58.837 55.000 10.23 0.00 0.00 3.43
224 225 1.135746 CAGAACTCGGAGGTGTCGTAC 60.136 57.143 10.23 0.00 0.00 3.67
225 226 0.179205 GAACTCGGAGGTGTCGTACG 60.179 60.000 9.53 9.53 0.00 3.67
226 227 0.886490 AACTCGGAGGTGTCGTACGT 60.886 55.000 16.05 0.00 0.00 3.57
227 228 0.886490 ACTCGGAGGTGTCGTACGTT 60.886 55.000 16.05 0.00 0.00 3.99
228 229 0.179205 CTCGGAGGTGTCGTACGTTC 60.179 60.000 16.05 10.37 0.00 3.95
229 230 1.510623 CGGAGGTGTCGTACGTTCG 60.511 63.158 16.05 8.41 39.50 3.95
230 231 1.154150 GGAGGTGTCGTACGTTCGG 60.154 63.158 16.05 0.00 0.00 4.30
231 232 1.576421 GAGGTGTCGTACGTTCGGT 59.424 57.895 16.05 0.00 0.00 4.69
232 233 0.727122 GAGGTGTCGTACGTTCGGTG 60.727 60.000 16.05 0.00 0.00 4.94
233 234 2.367344 GGTGTCGTACGTTCGGTGC 61.367 63.158 16.05 6.30 0.00 5.01
234 235 1.370900 GTGTCGTACGTTCGGTGCT 60.371 57.895 16.05 0.00 0.00 4.40
235 236 0.936297 GTGTCGTACGTTCGGTGCTT 60.936 55.000 16.05 0.00 0.00 3.91
236 237 0.935831 TGTCGTACGTTCGGTGCTTG 60.936 55.000 16.05 0.00 0.00 4.01
237 238 0.661187 GTCGTACGTTCGGTGCTTGA 60.661 55.000 16.05 0.00 0.00 3.02
238 239 0.241749 TCGTACGTTCGGTGCTTGAT 59.758 50.000 16.05 0.00 0.00 2.57
239 240 0.638746 CGTACGTTCGGTGCTTGATC 59.361 55.000 7.22 0.00 0.00 2.92
240 241 0.638746 GTACGTTCGGTGCTTGATCG 59.361 55.000 0.00 0.00 35.32 3.69
241 242 0.457166 TACGTTCGGTGCTTGATCGG 60.457 55.000 0.00 0.00 33.92 4.18
242 243 1.736645 CGTTCGGTGCTTGATCGGT 60.737 57.895 0.00 0.00 0.00 4.69
243 244 1.683790 CGTTCGGTGCTTGATCGGTC 61.684 60.000 0.00 0.00 0.00 4.79
244 245 1.445410 TTCGGTGCTTGATCGGTCG 60.445 57.895 0.00 0.00 0.00 4.79
245 246 2.829043 TTCGGTGCTTGATCGGTCGG 62.829 60.000 0.00 0.00 0.00 4.79
246 247 2.577059 GGTGCTTGATCGGTCGGA 59.423 61.111 0.00 0.00 0.00 4.55
247 248 1.144057 GGTGCTTGATCGGTCGGAT 59.856 57.895 0.00 0.00 38.35 4.18
257 258 4.832590 GATCGGTCGGATCTAGAAGAAA 57.167 45.455 12.01 0.00 46.66 2.52
258 259 5.379732 GATCGGTCGGATCTAGAAGAAAT 57.620 43.478 12.01 0.00 46.66 2.17
259 260 5.774630 GATCGGTCGGATCTAGAAGAAATT 58.225 41.667 12.01 0.00 46.66 1.82
260 261 5.184340 TCGGTCGGATCTAGAAGAAATTC 57.816 43.478 0.00 0.00 0.00 2.17
261 262 3.975670 CGGTCGGATCTAGAAGAAATTCG 59.024 47.826 0.00 0.00 0.00 3.34
262 263 4.261072 CGGTCGGATCTAGAAGAAATTCGA 60.261 45.833 0.00 0.00 0.00 3.71
263 264 4.977347 GGTCGGATCTAGAAGAAATTCGAC 59.023 45.833 13.47 13.47 42.18 4.20
264 265 5.221087 GGTCGGATCTAGAAGAAATTCGACT 60.221 44.000 18.79 1.29 42.43 4.18
265 266 6.017275 GGTCGGATCTAGAAGAAATTCGACTA 60.017 42.308 18.79 2.25 42.43 2.59
266 267 6.852345 GTCGGATCTAGAAGAAATTCGACTAC 59.148 42.308 14.25 0.00 40.52 2.73
267 268 6.541278 TCGGATCTAGAAGAAATTCGACTACA 59.459 38.462 0.00 0.00 0.00 2.74
268 269 7.228906 TCGGATCTAGAAGAAATTCGACTACAT 59.771 37.037 0.00 0.00 0.00 2.29
269 270 7.535940 CGGATCTAGAAGAAATTCGACTACATC 59.464 40.741 0.00 8.12 0.00 3.06
270 271 8.353684 GGATCTAGAAGAAATTCGACTACATCA 58.646 37.037 0.00 0.00 0.00 3.07
271 272 9.737427 GATCTAGAAGAAATTCGACTACATCAA 57.263 33.333 0.00 0.00 0.00 2.57
273 274 9.355215 TCTAGAAGAAATTCGACTACATCAAAC 57.645 33.333 0.00 0.00 0.00 2.93
274 275 7.050281 AGAAGAAATTCGACTACATCAAACG 57.950 36.000 0.00 0.00 0.00 3.60
275 276 5.204673 AGAAATTCGACTACATCAAACGC 57.795 39.130 0.00 0.00 0.00 4.84
276 277 3.634730 AATTCGACTACATCAAACGCG 57.365 42.857 3.53 3.53 0.00 6.01
277 278 2.054687 TTCGACTACATCAAACGCGT 57.945 45.000 5.58 5.58 0.00 6.01
278 279 2.054687 TCGACTACATCAAACGCGTT 57.945 45.000 20.79 20.79 0.00 4.84
279 280 1.717113 TCGACTACATCAAACGCGTTG 59.283 47.619 27.34 16.51 38.71 4.10
280 281 1.454276 CGACTACATCAAACGCGTTGT 59.546 47.619 27.34 21.68 38.47 3.32
281 282 2.470140 CGACTACATCAAACGCGTTGTC 60.470 50.000 27.34 22.94 38.47 3.18
282 283 2.473609 GACTACATCAAACGCGTTGTCA 59.526 45.455 27.34 12.75 38.47 3.58
283 284 2.867368 ACTACATCAAACGCGTTGTCAA 59.133 40.909 27.34 11.62 38.47 3.18
284 285 2.834574 ACATCAAACGCGTTGTCAAA 57.165 40.000 27.34 9.75 38.47 2.69
285 286 2.446282 ACATCAAACGCGTTGTCAAAC 58.554 42.857 27.34 0.00 38.47 2.93
293 294 4.205584 GTTGTCAAACGCTTCCGC 57.794 55.556 0.00 0.00 38.22 5.54
294 295 1.647084 GTTGTCAAACGCTTCCGCT 59.353 52.632 0.00 0.00 38.22 5.52
295 296 0.028902 GTTGTCAAACGCTTCCGCTT 59.971 50.000 0.00 0.00 38.22 4.68
296 297 0.736053 TTGTCAAACGCTTCCGCTTT 59.264 45.000 0.00 0.00 38.22 3.51
297 298 0.306533 TGTCAAACGCTTCCGCTTTC 59.693 50.000 0.00 0.00 38.22 2.62
298 299 0.721483 GTCAAACGCTTCCGCTTTCG 60.721 55.000 0.00 0.00 38.22 3.46
299 300 0.876777 TCAAACGCTTCCGCTTTCGA 60.877 50.000 0.00 0.00 38.22 3.71
300 301 0.165944 CAAACGCTTCCGCTTTCGAT 59.834 50.000 0.00 0.00 38.22 3.59
301 302 0.442699 AAACGCTTCCGCTTTCGATC 59.557 50.000 0.00 0.00 38.22 3.69
302 303 0.389948 AACGCTTCCGCTTTCGATCT 60.390 50.000 0.00 0.00 38.22 2.75
303 304 0.454600 ACGCTTCCGCTTTCGATCTA 59.545 50.000 0.00 0.00 38.22 1.98
304 305 0.847035 CGCTTCCGCTTTCGATCTAC 59.153 55.000 0.00 0.00 38.10 2.59
305 306 0.847035 GCTTCCGCTTTCGATCTACG 59.153 55.000 0.00 0.00 44.09 3.51
315 316 1.575244 TCGATCTACGAGGGTACGTG 58.425 55.000 0.00 0.00 46.45 4.49
316 317 0.585357 CGATCTACGAGGGTACGTGG 59.415 60.000 0.00 0.00 46.02 4.94
318 319 3.159298 TCTACGAGGGTACGTGGAC 57.841 57.895 0.00 0.00 45.53 4.02
319 320 0.324614 TCTACGAGGGTACGTGGACA 59.675 55.000 0.00 0.00 45.53 4.02
320 321 0.449388 CTACGAGGGTACGTGGACAC 59.551 60.000 0.00 0.00 44.98 3.67
321 322 0.250684 TACGAGGGTACGTGGACACA 60.251 55.000 0.00 0.00 46.02 3.72
322 323 1.080974 CGAGGGTACGTGGACACAC 60.081 63.158 0.00 0.00 44.23 3.82
323 324 1.521450 CGAGGGTACGTGGACACACT 61.521 60.000 0.00 0.00 45.50 3.55
324 325 0.243095 GAGGGTACGTGGACACACTC 59.757 60.000 2.84 2.84 45.50 3.51
325 326 0.178970 AGGGTACGTGGACACACTCT 60.179 55.000 0.00 0.00 45.50 3.24
326 327 0.243095 GGGTACGTGGACACACTCTC 59.757 60.000 0.00 0.00 45.50 3.20
327 328 0.243095 GGTACGTGGACACACTCTCC 59.757 60.000 0.00 0.00 45.50 3.71
328 329 0.956633 GTACGTGGACACACTCTCCA 59.043 55.000 0.00 0.00 45.50 3.86
332 333 2.746697 TGGACACACTCTCCACCTC 58.253 57.895 0.00 0.00 32.52 3.85
333 334 0.188587 TGGACACACTCTCCACCTCT 59.811 55.000 0.00 0.00 32.52 3.69
334 335 0.892063 GGACACACTCTCCACCTCTC 59.108 60.000 0.00 0.00 0.00 3.20
335 336 0.523966 GACACACTCTCCACCTCTCG 59.476 60.000 0.00 0.00 0.00 4.04
336 337 0.178987 ACACACTCTCCACCTCTCGT 60.179 55.000 0.00 0.00 0.00 4.18
337 338 0.962489 CACACTCTCCACCTCTCGTT 59.038 55.000 0.00 0.00 0.00 3.85
338 339 0.962489 ACACTCTCCACCTCTCGTTG 59.038 55.000 0.00 0.00 0.00 4.10
339 340 0.389166 CACTCTCCACCTCTCGTTGC 60.389 60.000 0.00 0.00 0.00 4.17
340 341 0.540830 ACTCTCCACCTCTCGTTGCT 60.541 55.000 0.00 0.00 0.00 3.91
341 342 1.271982 ACTCTCCACCTCTCGTTGCTA 60.272 52.381 0.00 0.00 0.00 3.49
342 343 2.028130 CTCTCCACCTCTCGTTGCTAT 58.972 52.381 0.00 0.00 0.00 2.97
343 344 1.751351 TCTCCACCTCTCGTTGCTATG 59.249 52.381 0.00 0.00 0.00 2.23
344 345 0.175760 TCCACCTCTCGTTGCTATGC 59.824 55.000 0.00 0.00 0.00 3.14
345 346 0.108186 CCACCTCTCGTTGCTATGCA 60.108 55.000 0.00 0.00 36.47 3.96
346 347 1.473965 CCACCTCTCGTTGCTATGCAT 60.474 52.381 3.79 3.79 38.76 3.96
347 348 1.863454 CACCTCTCGTTGCTATGCATC 59.137 52.381 0.19 0.00 38.76 3.91
348 349 1.759445 ACCTCTCGTTGCTATGCATCT 59.241 47.619 0.19 0.00 38.76 2.90
349 350 2.169352 ACCTCTCGTTGCTATGCATCTT 59.831 45.455 0.19 0.00 38.76 2.40
350 351 2.799412 CCTCTCGTTGCTATGCATCTTC 59.201 50.000 0.19 0.00 38.76 2.87
351 352 3.492309 CCTCTCGTTGCTATGCATCTTCT 60.492 47.826 0.19 0.00 38.76 2.85
352 353 4.261783 CCTCTCGTTGCTATGCATCTTCTA 60.262 45.833 0.19 0.00 38.76 2.10
353 354 4.864633 TCTCGTTGCTATGCATCTTCTAG 58.135 43.478 0.19 0.00 38.76 2.43
354 355 4.580580 TCTCGTTGCTATGCATCTTCTAGA 59.419 41.667 0.19 0.00 38.76 2.43
355 356 5.242615 TCTCGTTGCTATGCATCTTCTAGAT 59.757 40.000 0.19 0.00 38.76 1.98
356 357 6.431234 TCTCGTTGCTATGCATCTTCTAGATA 59.569 38.462 0.19 0.00 38.76 1.98
357 358 6.616017 TCGTTGCTATGCATCTTCTAGATAG 58.384 40.000 0.19 0.00 38.76 2.08
358 359 6.431234 TCGTTGCTATGCATCTTCTAGATAGA 59.569 38.462 0.19 0.11 38.76 1.98
359 360 7.121907 TCGTTGCTATGCATCTTCTAGATAGAT 59.878 37.037 0.19 10.06 38.76 1.98
360 361 7.431960 CGTTGCTATGCATCTTCTAGATAGATC 59.568 40.741 0.19 9.17 38.76 2.75
361 362 8.469200 GTTGCTATGCATCTTCTAGATAGATCT 58.531 37.037 0.19 0.00 38.76 2.75
362 363 8.592529 TGCTATGCATCTTCTAGATAGATCTT 57.407 34.615 0.19 0.00 32.12 2.40
363 364 8.468399 TGCTATGCATCTTCTAGATAGATCTTG 58.532 37.037 0.19 0.00 32.12 3.02
364 365 7.436080 GCTATGCATCTTCTAGATAGATCTTGC 59.564 40.741 0.19 13.69 38.32 4.01
365 366 5.707931 TGCATCTTCTAGATAGATCTTGCG 58.292 41.667 0.00 5.35 38.32 4.85
366 367 5.242615 TGCATCTTCTAGATAGATCTTGCGT 59.757 40.000 0.00 0.00 38.32 5.24
367 368 5.572511 GCATCTTCTAGATAGATCTTGCGTG 59.427 44.000 0.00 5.42 38.32 5.34
368 369 6.569418 GCATCTTCTAGATAGATCTTGCGTGA 60.569 42.308 0.00 0.00 38.32 4.35
369 370 6.552859 TCTTCTAGATAGATCTTGCGTGAG 57.447 41.667 0.00 0.00 38.32 3.51
406 407 7.790823 ATTTAAATTGCATGCTACATTTCCC 57.209 32.000 20.33 0.00 0.00 3.97
407 408 4.822685 AAATTGCATGCTACATTTCCCA 57.177 36.364 20.33 0.00 0.00 4.37
408 409 4.822685 AATTGCATGCTACATTTCCCAA 57.177 36.364 20.33 0.30 0.00 4.12
409 410 3.591196 TTGCATGCTACATTTCCCAAC 57.409 42.857 20.33 0.00 0.00 3.77
413 414 3.193267 GCATGCTACATTTCCCAACAAGA 59.807 43.478 11.37 0.00 0.00 3.02
415 416 5.585390 CATGCTACATTTCCCAACAAGATC 58.415 41.667 0.00 0.00 0.00 2.75
428 429 6.707608 TCCCAACAAGATCAATATTGAGATCG 59.292 38.462 21.97 13.33 44.10 3.69
429 430 6.072838 CCCAACAAGATCAATATTGAGATCGG 60.073 42.308 21.97 14.91 44.10 4.18
448 449 3.905331 TGGCCACCACTACAACAAA 57.095 47.368 0.00 0.00 0.00 2.83
450 451 1.064314 TGGCCACCACTACAACAAAGT 60.064 47.619 0.00 0.00 0.00 2.66
466 467 8.307582 ACAACAAAGTATACTACCTAGCTGAT 57.692 34.615 5.65 0.00 0.00 2.90
513 514 1.496857 TGTGAAGACAATCCCCAACCA 59.503 47.619 0.00 0.00 0.00 3.67
528 529 3.133721 CCCAACCATGTAGGAGAGAAGAG 59.866 52.174 0.00 0.00 41.22 2.85
532 533 4.285863 ACCATGTAGGAGAGAAGAGGAAG 58.714 47.826 0.00 0.00 41.22 3.46
539 540 6.957020 TGTAGGAGAGAAGAGGAAGAGATTTT 59.043 38.462 0.00 0.00 0.00 1.82
546 547 7.017056 AGAGAAGAGGAAGAGATTTTTCCAAGA 59.983 37.037 6.77 0.00 45.28 3.02
547 548 7.167535 AGAAGAGGAAGAGATTTTTCCAAGAG 58.832 38.462 6.77 0.00 45.28 2.85
551 552 5.242615 AGGAAGAGATTTTTCCAAGAGCAAC 59.757 40.000 6.77 0.00 45.28 4.17
553 554 6.461509 GGAAGAGATTTTTCCAAGAGCAACAA 60.462 38.462 0.00 0.00 42.93 2.83
558 559 4.799564 TTTTCCAAGAGCAACAAAGTGT 57.200 36.364 0.00 0.00 0.00 3.55
572 573 5.304686 ACAAAGTGTTAGGAAGGATGTGA 57.695 39.130 0.00 0.00 0.00 3.58
575 576 3.944087 AGTGTTAGGAAGGATGTGAAGC 58.056 45.455 0.00 0.00 0.00 3.86
576 577 3.327757 AGTGTTAGGAAGGATGTGAAGCA 59.672 43.478 0.00 0.00 0.00 3.91
584 585 1.822990 AGGATGTGAAGCATGCCTTTG 59.177 47.619 15.66 0.00 45.61 2.77
597 598 4.634199 CATGCCTTTGGTGTTCTTCAATT 58.366 39.130 0.00 0.00 0.00 2.32
599 600 5.096443 TGCCTTTGGTGTTCTTCAATTTT 57.904 34.783 0.00 0.00 0.00 1.82
611 612 3.130869 TCTTCAATTTTGATGGGGCATCG 59.869 43.478 6.41 0.00 43.14 3.84
618 619 1.331399 TGATGGGGCATCGTTCGGTA 61.331 55.000 0.00 0.00 43.14 4.02
620 621 0.472471 ATGGGGCATCGTTCGGTATT 59.528 50.000 0.00 0.00 0.00 1.89
621 622 0.179067 TGGGGCATCGTTCGGTATTC 60.179 55.000 0.00 0.00 0.00 1.75
624 625 1.217882 GGCATCGTTCGGTATTCTGG 58.782 55.000 0.00 0.00 0.00 3.86
630 631 5.529791 CATCGTTCGGTATTCTGGTAGAAT 58.470 41.667 8.87 8.87 46.01 2.40
634 635 5.808540 CGTTCGGTATTCTGGTAGAATTTGA 59.191 40.000 9.12 3.57 41.90 2.69
643 644 4.761739 TCTGGTAGAATTTGAAGCACCAAG 59.238 41.667 0.00 0.00 35.73 3.61
662 664 3.692257 AGAAGTTGTGGGAGTGATGAG 57.308 47.619 0.00 0.00 0.00 2.90
703 705 5.855925 CACAGTATGATCGTAGAGAATGAGC 59.144 44.000 0.00 0.00 39.60 4.26
709 711 0.317103 CGTAGAGAATGAGCGTCCGG 60.317 60.000 0.00 0.00 0.00 5.14
714 716 1.000283 GAGAATGAGCGTCCGGATGAT 60.000 52.381 28.06 22.44 0.00 2.45
720 722 2.747989 TGAGCGTCCGGATGATATCTAC 59.252 50.000 28.06 9.21 0.00 2.59
723 725 2.475852 GCGTCCGGATGATATCTACGAC 60.476 54.545 28.06 6.54 34.35 4.34
733 735 5.687166 TGATATCTACGACCAAGGGTTTT 57.313 39.130 3.98 0.00 35.25 2.43
735 737 6.812998 TGATATCTACGACCAAGGGTTTTAG 58.187 40.000 3.98 0.00 35.25 1.85
741 743 4.271661 ACGACCAAGGGTTTTAGTTTCAA 58.728 39.130 0.00 0.00 35.25 2.69
742 744 4.891168 ACGACCAAGGGTTTTAGTTTCAAT 59.109 37.500 0.00 0.00 35.25 2.57
747 749 6.155393 ACCAAGGGTTTTAGTTTCAATGTGAA 59.845 34.615 0.00 0.00 29.65 3.18
752 754 7.714813 AGGGTTTTAGTTTCAATGTGAAAATGG 59.285 33.333 12.50 0.00 46.53 3.16
758 760 4.669206 TTCAATGTGAAAATGGTGTGCT 57.331 36.364 0.00 0.00 32.71 4.40
759 761 4.669206 TCAATGTGAAAATGGTGTGCTT 57.331 36.364 0.00 0.00 0.00 3.91
779 781 1.340697 TGAGCATGGAAGAGCAGCAAT 60.341 47.619 0.00 0.00 0.00 3.56
780 782 2.092807 TGAGCATGGAAGAGCAGCAATA 60.093 45.455 0.00 0.00 0.00 1.90
784 786 5.135383 AGCATGGAAGAGCAGCAATATTTA 58.865 37.500 0.00 0.00 0.00 1.40
794 796 6.600822 AGAGCAGCAATATTTACACAGTTCAT 59.399 34.615 0.00 0.00 0.00 2.57
795 797 7.121759 AGAGCAGCAATATTTACACAGTTCATT 59.878 33.333 0.00 0.00 0.00 2.57
820 822 9.720667 TTGAATTTCATCATCAAATACGTGATC 57.279 29.630 0.00 0.00 36.04 2.92
823 825 4.306600 TCATCATCAAATACGTGATCGGG 58.693 43.478 0.00 0.00 41.85 5.14
831 833 4.402056 AATACGTGATCGGGAAACTCAT 57.598 40.909 0.00 0.00 41.85 2.90
833 835 3.160777 ACGTGATCGGGAAACTCATAC 57.839 47.619 0.00 0.00 41.85 2.39
835 837 3.194968 ACGTGATCGGGAAACTCATACTT 59.805 43.478 0.00 0.00 41.85 2.24
840 842 6.255887 GTGATCGGGAAACTCATACTTAACTG 59.744 42.308 0.00 0.00 0.00 3.16
848 884 4.848357 ACTCATACTTAACTGCAGGCAAT 58.152 39.130 19.93 3.72 0.00 3.56
853 889 4.445452 ACTTAACTGCAGGCAATCAATG 57.555 40.909 19.93 1.90 0.00 2.82
856 892 3.308438 AACTGCAGGCAATCAATGAAC 57.692 42.857 19.93 0.00 0.00 3.18
858 894 1.200716 CTGCAGGCAATCAATGAACGT 59.799 47.619 5.57 0.00 0.00 3.99
861 897 3.065233 TGCAGGCAATCAATGAACGTATC 59.935 43.478 0.00 0.00 0.00 2.24
863 899 3.309682 CAGGCAATCAATGAACGTATCGT 59.690 43.478 0.00 0.00 43.97 3.73
866 902 4.743151 GGCAATCAATGAACGTATCGTCTA 59.257 41.667 0.00 0.00 39.99 2.59
881 917 9.755064 ACGTATCGTCTATTTTTCTTTCAAATG 57.245 29.630 0.00 0.00 33.69 2.32
882 918 9.210426 CGTATCGTCTATTTTTCTTTCAAATGG 57.790 33.333 0.00 0.00 0.00 3.16
894 930 8.422973 TTTCTTTCAAATGGTTGAGACAATTG 57.577 30.769 3.24 3.24 44.49 2.32
897 933 7.706179 TCTTTCAAATGGTTGAGACAATTGAAC 59.294 33.333 13.59 5.82 44.49 3.18
898 934 6.462552 TCAAATGGTTGAGACAATTGAACA 57.537 33.333 13.59 6.19 38.88 3.18
907 943 9.260002 GGTTGAGACAATTGAACATTTATTTGT 57.740 29.630 13.59 0.00 0.00 2.83
909 945 8.726650 TGAGACAATTGAACATTTATTTGTCG 57.273 30.769 13.59 0.00 0.00 4.35
1147 1189 1.079266 CTGCCAGACACCAGAGAGC 60.079 63.158 0.00 0.00 0.00 4.09
1158 1200 1.216444 CAGAGAGCACGCTAGGCAA 59.784 57.895 0.00 0.00 0.00 4.52
1178 1220 4.918201 GCGGCCTAGCGATGCCTT 62.918 66.667 11.08 0.00 45.71 4.35
1179 1221 2.203070 CGGCCTAGCGATGCCTTT 60.203 61.111 11.08 0.00 45.71 3.11
1300 1342 2.963854 CATCTGCTACTGGCCGCG 60.964 66.667 0.00 0.00 40.92 6.46
1363 1406 2.517414 CCCGTGGCATCCATCCAT 59.483 61.111 0.00 0.00 35.28 3.41
1736 1782 1.150536 GCCGGGAATCCATTGGCTA 59.849 57.895 18.36 0.00 42.44 3.93
1754 1800 2.735762 GCTACTGTCGGTAAAGCTGAGG 60.736 54.545 0.00 0.00 32.20 3.86
1760 1806 1.689813 TCGGTAAAGCTGAGGTGAACA 59.310 47.619 0.00 0.00 0.00 3.18
1763 1809 2.480845 GTAAAGCTGAGGTGAACACGT 58.519 47.619 0.00 0.00 0.00 4.49
1909 1955 6.145056 TTGAACTGTCATACACAAGTGTGCT 61.145 40.000 15.65 0.69 44.63 4.40
1948 1994 9.846248 TGATGTCTCATAGTTTGATGATATACG 57.154 33.333 0.00 0.00 35.32 3.06
1966 2012 3.777465 ACGAGTACACGCATCTATTGT 57.223 42.857 12.79 0.00 36.70 2.71
1967 2013 3.435566 ACGAGTACACGCATCTATTGTG 58.564 45.455 12.79 0.00 41.78 3.33
1969 2015 3.482472 CGAGTACACGCATCTATTGTGTC 59.518 47.826 0.00 0.00 45.95 3.67
2069 2116 5.179555 CCTGCAAAGTAGTTACTTGGTCTTC 59.820 44.000 5.37 0.00 45.17 2.87
2083 2130 6.591935 ACTTGGTCTTCTTCTGTGTTGATAA 58.408 36.000 0.00 0.00 0.00 1.75
2125 2172 9.467258 CTTTTGAAGTTTCTGCAAATTCTCATA 57.533 29.630 4.09 0.00 38.61 2.15
2142 2189 7.692460 TTCTCATACTCATGCTGTTCAAATT 57.308 32.000 0.00 0.00 31.73 1.82
2332 2382 2.346803 CACCGAATGGACTGTAGTTGG 58.653 52.381 0.00 0.00 39.21 3.77
2519 3818 5.914033 AGTAGCTTGTACAGAAACAGAACA 58.086 37.500 0.00 0.00 0.00 3.18
2698 3998 3.068024 TGGAACAAACTTCAGAATGGTGC 59.932 43.478 0.00 0.00 31.67 5.01
2702 4002 0.593128 AACTTCAGAATGGTGCGTGC 59.407 50.000 0.00 0.00 36.16 5.34
2822 4122 9.384764 GAGAAAGCAGGTATAAAGATTAACAGT 57.615 33.333 0.00 0.00 0.00 3.55
2879 4179 2.246719 ATATGCTTCCAAGAGTCCGC 57.753 50.000 0.00 0.00 0.00 5.54
2927 4227 7.288672 GTTTAGTTAACTCTGGTGACGATTTG 58.711 38.462 12.39 0.00 33.79 2.32
3027 4327 6.003950 TCTGAAGGATACAAGGTGAAAAAGG 58.996 40.000 0.00 0.00 41.41 3.11
3039 4339 6.254281 AGGTGAAAAAGGTCGATGTTATTG 57.746 37.500 0.00 0.00 0.00 1.90
3119 4419 2.368875 TGGTTCTTCTTGTCTGGAGGAC 59.631 50.000 0.00 0.00 44.70 3.85
3184 4485 2.420372 GAGTCAGAGTCGCATACAGTCA 59.580 50.000 0.00 0.00 0.00 3.41
3194 4495 5.103000 GTCGCATACAGTCACAAAGTATCT 58.897 41.667 0.00 0.00 0.00 1.98
3214 4515 0.905357 TCTTCTAGCTCCACTTGCCC 59.095 55.000 0.00 0.00 0.00 5.36
3239 4540 6.259550 GTTGCTATTCCAACTGTTGAATCT 57.740 37.500 21.49 6.18 41.36 2.40
3326 4627 4.278170 TCCAAAAATCTGTCGACAAATGCT 59.722 37.500 20.49 0.06 0.00 3.79
3329 4630 6.640499 CCAAAAATCTGTCGACAAATGCTAAA 59.360 34.615 20.49 0.00 0.00 1.85
3332 4633 6.801539 AATCTGTCGACAAATGCTAAAGAA 57.198 33.333 20.49 0.00 0.00 2.52
3340 4641 5.106555 CGACAAATGCTAAAGAACCATCACT 60.107 40.000 0.00 0.00 0.00 3.41
3349 4650 2.787994 AGAACCATCACTGCAAAGGAG 58.212 47.619 0.00 0.00 0.00 3.69
3546 4847 2.866156 CAGACAAGAGAAGCAAACGACA 59.134 45.455 0.00 0.00 0.00 4.35
3749 5050 0.590732 GCAAGAATCAGCCAATCGCG 60.591 55.000 0.00 0.00 44.76 5.87
3921 5732 4.420168 ACAAGGTGTTGATTTGTTGTTCG 58.580 39.130 0.00 0.00 37.10 3.95
4046 5857 6.669125 TGATGGAATGTTGGAGAACAATTT 57.331 33.333 0.00 0.00 45.23 1.82
4051 5862 7.507829 TGGAATGTTGGAGAACAATTTGATTT 58.492 30.769 2.79 0.00 45.23 2.17
4205 6024 4.944317 AGCAGAGCAATTACCTCTAAAACC 59.056 41.667 7.31 0.00 37.57 3.27
4212 6031 5.358160 GCAATTACCTCTAAAACCTGCAGAT 59.642 40.000 17.39 0.00 0.00 2.90
4228 6047 2.663602 GCAGATAGAACACACGTGTCAG 59.336 50.000 20.49 11.62 44.13 3.51
4274 6093 2.591715 CGCCTCCGCCTATTTGGG 60.592 66.667 0.00 0.00 36.00 4.12
4313 6132 4.933064 CATCCGAGGACGCGAGCC 62.933 72.222 15.93 14.43 38.29 4.70
4617 6452 2.183046 GTGCTGCTCGTCCTCTCC 59.817 66.667 0.00 0.00 0.00 3.71
4862 6774 3.011583 CCGGAAATTAGCGCGGAC 58.988 61.111 8.83 0.00 0.00 4.79
4983 7035 2.253452 GTTGCGGCTGCTGTTCTG 59.747 61.111 20.27 0.00 43.34 3.02
5057 7544 3.013921 TCTTGTTCGTCTGGTTTTGCTT 58.986 40.909 0.00 0.00 0.00 3.91
5070 7557 3.243839 GGTTTTGCTTGCTGAGATGGAAA 60.244 43.478 0.00 0.00 0.00 3.13
5071 7558 3.928727 TTTGCTTGCTGAGATGGAAAG 57.071 42.857 0.00 0.00 0.00 2.62
5072 7559 1.171308 TGCTTGCTGAGATGGAAAGC 58.829 50.000 0.00 0.00 43.59 3.51
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 6.942005 ACTGTTGTAAATCTCATGATGGTTCA 59.058 34.615 0.00 0.00 36.00 3.18
1 2 7.383102 ACTGTTGTAAATCTCATGATGGTTC 57.617 36.000 0.00 0.00 32.44 3.62
2 3 8.862325 TTACTGTTGTAAATCTCATGATGGTT 57.138 30.769 0.00 0.00 35.90 3.67
3 4 8.321353 TCTTACTGTTGTAAATCTCATGATGGT 58.679 33.333 0.00 0.00 38.09 3.55
4 5 8.722480 TCTTACTGTTGTAAATCTCATGATGG 57.278 34.615 0.00 0.00 38.09 3.51
5 6 9.376075 ACTCTTACTGTTGTAAATCTCATGATG 57.624 33.333 0.00 0.00 38.09 3.07
6 7 9.376075 CACTCTTACTGTTGTAAATCTCATGAT 57.624 33.333 0.00 0.00 38.09 2.45
7 8 7.819415 CCACTCTTACTGTTGTAAATCTCATGA 59.181 37.037 0.00 0.00 38.09 3.07
8 9 7.604164 ACCACTCTTACTGTTGTAAATCTCATG 59.396 37.037 0.00 0.00 38.09 3.07
9 10 7.604164 CACCACTCTTACTGTTGTAAATCTCAT 59.396 37.037 0.00 0.00 38.09 2.90
10 11 6.929049 CACCACTCTTACTGTTGTAAATCTCA 59.071 38.462 0.00 0.00 38.09 3.27
11 12 7.116519 GTCACCACTCTTACTGTTGTAAATCTC 59.883 40.741 0.00 0.00 38.09 2.75
12 13 6.929606 GTCACCACTCTTACTGTTGTAAATCT 59.070 38.462 0.00 0.00 38.09 2.40
13 14 6.128902 CGTCACCACTCTTACTGTTGTAAATC 60.129 42.308 0.00 0.00 38.09 2.17
14 15 5.694910 CGTCACCACTCTTACTGTTGTAAAT 59.305 40.000 0.00 0.00 38.09 1.40
15 16 5.045215 CGTCACCACTCTTACTGTTGTAAA 58.955 41.667 0.00 0.00 38.09 2.01
16 17 4.098349 ACGTCACCACTCTTACTGTTGTAA 59.902 41.667 0.00 0.00 37.16 2.41
17 18 3.633525 ACGTCACCACTCTTACTGTTGTA 59.366 43.478 0.00 0.00 0.00 2.41
18 19 2.429610 ACGTCACCACTCTTACTGTTGT 59.570 45.455 0.00 0.00 0.00 3.32
19 20 2.794910 CACGTCACCACTCTTACTGTTG 59.205 50.000 0.00 0.00 0.00 3.33
20 21 2.223971 CCACGTCACCACTCTTACTGTT 60.224 50.000 0.00 0.00 0.00 3.16
21 22 1.340248 CCACGTCACCACTCTTACTGT 59.660 52.381 0.00 0.00 0.00 3.55
22 23 1.935300 GCCACGTCACCACTCTTACTG 60.935 57.143 0.00 0.00 0.00 2.74
23 24 0.317479 GCCACGTCACCACTCTTACT 59.683 55.000 0.00 0.00 0.00 2.24
24 25 0.032952 TGCCACGTCACCACTCTTAC 59.967 55.000 0.00 0.00 0.00 2.34
25 26 0.973632 ATGCCACGTCACCACTCTTA 59.026 50.000 0.00 0.00 0.00 2.10
26 27 0.320771 GATGCCACGTCACCACTCTT 60.321 55.000 0.00 0.00 0.00 2.85
27 28 1.293498 GATGCCACGTCACCACTCT 59.707 57.895 0.00 0.00 0.00 3.24
28 29 0.391661 ATGATGCCACGTCACCACTC 60.392 55.000 0.00 0.00 0.00 3.51
29 30 0.036732 AATGATGCCACGTCACCACT 59.963 50.000 0.00 0.00 0.00 4.00
30 31 1.665679 CTAATGATGCCACGTCACCAC 59.334 52.381 0.00 0.00 0.00 4.16
31 32 2.011548 GCTAATGATGCCACGTCACCA 61.012 52.381 0.00 0.00 0.00 4.17
32 33 0.657840 GCTAATGATGCCACGTCACC 59.342 55.000 0.00 0.00 0.00 4.02
33 34 1.328680 CTGCTAATGATGCCACGTCAC 59.671 52.381 0.00 0.00 0.00 3.67
34 35 1.206849 TCTGCTAATGATGCCACGTCA 59.793 47.619 0.00 0.00 0.00 4.35
35 36 1.863454 CTCTGCTAATGATGCCACGTC 59.137 52.381 0.00 0.00 0.00 4.34
36 37 1.473965 CCTCTGCTAATGATGCCACGT 60.474 52.381 0.00 0.00 0.00 4.49
37 38 1.224075 CCTCTGCTAATGATGCCACG 58.776 55.000 0.00 0.00 0.00 4.94
38 39 2.338577 ACCTCTGCTAATGATGCCAC 57.661 50.000 0.00 0.00 0.00 5.01
39 40 3.455910 AGTAACCTCTGCTAATGATGCCA 59.544 43.478 0.00 0.00 0.00 4.92
40 41 3.812053 CAGTAACCTCTGCTAATGATGCC 59.188 47.826 0.00 0.00 0.00 4.40
41 42 4.446371 ACAGTAACCTCTGCTAATGATGC 58.554 43.478 0.00 0.00 38.84 3.91
42 43 5.694006 GCTACAGTAACCTCTGCTAATGATG 59.306 44.000 0.00 0.00 38.84 3.07
43 44 5.600484 AGCTACAGTAACCTCTGCTAATGAT 59.400 40.000 0.00 0.00 38.84 2.45
44 45 4.956700 AGCTACAGTAACCTCTGCTAATGA 59.043 41.667 0.00 0.00 38.84 2.57
45 46 5.269505 AGCTACAGTAACCTCTGCTAATG 57.730 43.478 0.00 0.00 38.84 1.90
46 47 5.422331 TCAAGCTACAGTAACCTCTGCTAAT 59.578 40.000 0.00 0.00 38.84 1.73
47 48 4.770531 TCAAGCTACAGTAACCTCTGCTAA 59.229 41.667 0.00 0.00 38.84 3.09
48 49 4.341487 TCAAGCTACAGTAACCTCTGCTA 58.659 43.478 0.00 0.00 38.84 3.49
49 50 3.165875 TCAAGCTACAGTAACCTCTGCT 58.834 45.455 0.00 0.00 38.84 4.24
50 51 3.594603 TCAAGCTACAGTAACCTCTGC 57.405 47.619 0.00 0.00 38.84 4.26
51 52 6.926272 GGATAATCAAGCTACAGTAACCTCTG 59.074 42.308 0.00 0.00 40.80 3.35
52 53 6.239064 CGGATAATCAAGCTACAGTAACCTCT 60.239 42.308 0.00 0.00 0.00 3.69
53 54 5.921408 CGGATAATCAAGCTACAGTAACCTC 59.079 44.000 0.00 0.00 0.00 3.85
54 55 5.221461 CCGGATAATCAAGCTACAGTAACCT 60.221 44.000 0.00 0.00 0.00 3.50
55 56 4.989168 CCGGATAATCAAGCTACAGTAACC 59.011 45.833 0.00 0.00 0.00 2.85
56 57 4.989168 CCCGGATAATCAAGCTACAGTAAC 59.011 45.833 0.73 0.00 0.00 2.50
57 58 4.502604 GCCCGGATAATCAAGCTACAGTAA 60.503 45.833 0.73 0.00 0.00 2.24
58 59 3.006537 GCCCGGATAATCAAGCTACAGTA 59.993 47.826 0.73 0.00 0.00 2.74
59 60 2.224305 GCCCGGATAATCAAGCTACAGT 60.224 50.000 0.73 0.00 0.00 3.55
60 61 2.417719 GCCCGGATAATCAAGCTACAG 58.582 52.381 0.73 0.00 0.00 2.74
61 62 1.270094 CGCCCGGATAATCAAGCTACA 60.270 52.381 0.73 0.00 0.00 2.74
62 63 1.270147 ACGCCCGGATAATCAAGCTAC 60.270 52.381 0.73 0.00 0.00 3.58
63 64 1.000506 GACGCCCGGATAATCAAGCTA 59.999 52.381 0.73 0.00 0.00 3.32
64 65 0.249911 GACGCCCGGATAATCAAGCT 60.250 55.000 0.73 0.00 0.00 3.74
65 66 0.531974 TGACGCCCGGATAATCAAGC 60.532 55.000 0.73 0.00 0.00 4.01
66 67 1.217882 GTGACGCCCGGATAATCAAG 58.782 55.000 0.73 0.00 0.00 3.02
67 68 0.537653 TGTGACGCCCGGATAATCAA 59.462 50.000 0.73 0.00 0.00 2.57
68 69 0.179094 GTGTGACGCCCGGATAATCA 60.179 55.000 0.73 0.00 0.00 2.57
69 70 0.878961 GGTGTGACGCCCGGATAATC 60.879 60.000 0.73 0.00 0.00 1.75
70 71 1.145377 GGTGTGACGCCCGGATAAT 59.855 57.895 0.73 0.00 0.00 1.28
71 72 1.985662 AGGTGTGACGCCCGGATAA 60.986 57.895 12.26 0.00 33.99 1.75
72 73 2.363276 AGGTGTGACGCCCGGATA 60.363 61.111 12.26 0.00 33.99 2.59
73 74 4.082523 CAGGTGTGACGCCCGGAT 62.083 66.667 12.26 0.00 33.99 4.18
80 81 2.433145 ATCTGCGCAGGTGTGACG 60.433 61.111 35.36 10.25 0.00 4.35
81 82 1.374631 TGATCTGCGCAGGTGTGAC 60.375 57.895 35.36 18.24 0.00 3.67
82 83 1.374631 GTGATCTGCGCAGGTGTGA 60.375 57.895 35.36 18.05 0.00 3.58
83 84 0.952497 AAGTGATCTGCGCAGGTGTG 60.952 55.000 35.36 12.68 0.00 3.82
84 85 0.671781 GAAGTGATCTGCGCAGGTGT 60.672 55.000 35.36 22.09 0.00 4.16
85 86 0.671472 TGAAGTGATCTGCGCAGGTG 60.671 55.000 35.36 13.50 0.00 4.00
86 87 0.671781 GTGAAGTGATCTGCGCAGGT 60.672 55.000 35.36 31.35 30.50 4.00
87 88 1.364626 GGTGAAGTGATCTGCGCAGG 61.365 60.000 35.36 18.08 31.65 4.85
88 89 0.671472 TGGTGAAGTGATCTGCGCAG 60.671 55.000 31.53 31.53 31.65 5.18
89 90 0.250252 TTGGTGAAGTGATCTGCGCA 60.250 50.000 10.98 10.98 31.65 6.09
90 91 0.166814 GTTGGTGAAGTGATCTGCGC 59.833 55.000 0.00 0.00 0.00 6.09
91 92 1.195448 GTGTTGGTGAAGTGATCTGCG 59.805 52.381 0.00 0.00 0.00 5.18
92 93 2.225019 CAGTGTTGGTGAAGTGATCTGC 59.775 50.000 0.00 0.00 0.00 4.26
93 94 3.470709 ACAGTGTTGGTGAAGTGATCTG 58.529 45.455 0.00 0.00 0.00 2.90
94 95 3.134623 TGACAGTGTTGGTGAAGTGATCT 59.865 43.478 0.00 0.00 0.00 2.75
95 96 3.248602 GTGACAGTGTTGGTGAAGTGATC 59.751 47.826 0.00 0.00 0.00 2.92
96 97 3.206150 GTGACAGTGTTGGTGAAGTGAT 58.794 45.455 0.00 0.00 0.00 3.06
97 98 2.627945 GTGACAGTGTTGGTGAAGTGA 58.372 47.619 0.00 0.00 0.00 3.41
98 99 1.670811 GGTGACAGTGTTGGTGAAGTG 59.329 52.381 0.00 0.00 0.00 3.16
99 100 1.280710 TGGTGACAGTGTTGGTGAAGT 59.719 47.619 0.00 0.00 35.01 3.01
100 101 2.036958 TGGTGACAGTGTTGGTGAAG 57.963 50.000 0.00 0.00 35.01 3.02
113 114 0.317770 CAACACAACGGCATGGTGAC 60.318 55.000 0.00 0.00 35.41 3.67
114 115 0.464554 TCAACACAACGGCATGGTGA 60.465 50.000 0.00 0.00 40.23 4.02
115 116 0.317770 GTCAACACAACGGCATGGTG 60.318 55.000 0.00 0.00 38.47 4.17
116 117 1.781025 CGTCAACACAACGGCATGGT 61.781 55.000 0.00 0.00 36.51 3.55
117 118 1.082169 CGTCAACACAACGGCATGG 60.082 57.895 0.00 0.00 36.51 3.66
118 119 4.513275 CGTCAACACAACGGCATG 57.487 55.556 0.00 0.00 36.51 4.06
123 124 1.282817 TGAGTTCCGTCAACACAACG 58.717 50.000 0.00 0.00 37.48 4.10
124 125 3.131396 AGATGAGTTCCGTCAACACAAC 58.869 45.455 0.02 0.00 38.82 3.32
125 126 3.469008 AGATGAGTTCCGTCAACACAA 57.531 42.857 0.02 0.00 38.82 3.33
126 127 3.572682 AGTAGATGAGTTCCGTCAACACA 59.427 43.478 0.00 0.00 39.56 3.72
127 128 4.175787 AGTAGATGAGTTCCGTCAACAC 57.824 45.455 0.00 0.00 37.48 3.32
128 129 4.866508 AAGTAGATGAGTTCCGTCAACA 57.133 40.909 0.00 0.00 37.48 3.33
129 130 5.471257 AGAAAGTAGATGAGTTCCGTCAAC 58.529 41.667 0.00 0.00 33.19 3.18
130 131 5.619309 CGAGAAAGTAGATGAGTTCCGTCAA 60.619 44.000 0.00 0.00 33.19 3.18
131 132 4.142665 CGAGAAAGTAGATGAGTTCCGTCA 60.143 45.833 0.00 0.00 33.19 4.35
132 133 4.094590 TCGAGAAAGTAGATGAGTTCCGTC 59.905 45.833 0.00 0.00 0.00 4.79
133 134 4.008330 TCGAGAAAGTAGATGAGTTCCGT 58.992 43.478 0.00 0.00 0.00 4.69
134 135 4.142665 TGTCGAGAAAGTAGATGAGTTCCG 60.143 45.833 0.00 0.00 0.00 4.30
135 136 5.096849 GTGTCGAGAAAGTAGATGAGTTCC 58.903 45.833 0.00 0.00 0.00 3.62
136 137 5.096849 GGTGTCGAGAAAGTAGATGAGTTC 58.903 45.833 0.00 0.00 0.00 3.01
137 138 4.767928 AGGTGTCGAGAAAGTAGATGAGTT 59.232 41.667 0.00 0.00 0.00 3.01
138 139 4.337145 AGGTGTCGAGAAAGTAGATGAGT 58.663 43.478 0.00 0.00 0.00 3.41
139 140 4.974368 AGGTGTCGAGAAAGTAGATGAG 57.026 45.455 0.00 0.00 0.00 2.90
140 141 5.944599 AGTAAGGTGTCGAGAAAGTAGATGA 59.055 40.000 0.00 0.00 0.00 2.92
141 142 6.030849 CAGTAAGGTGTCGAGAAAGTAGATG 58.969 44.000 0.00 0.00 0.00 2.90
142 143 5.125739 CCAGTAAGGTGTCGAGAAAGTAGAT 59.874 44.000 0.00 0.00 0.00 1.98
143 144 4.458295 CCAGTAAGGTGTCGAGAAAGTAGA 59.542 45.833 0.00 0.00 0.00 2.59
144 145 4.458295 TCCAGTAAGGTGTCGAGAAAGTAG 59.542 45.833 0.00 0.00 39.02 2.57
145 146 4.401022 TCCAGTAAGGTGTCGAGAAAGTA 58.599 43.478 0.00 0.00 39.02 2.24
146 147 3.228453 TCCAGTAAGGTGTCGAGAAAGT 58.772 45.455 0.00 0.00 39.02 2.66
147 148 3.936372 TCCAGTAAGGTGTCGAGAAAG 57.064 47.619 0.00 0.00 39.02 2.62
148 149 3.830178 TGATCCAGTAAGGTGTCGAGAAA 59.170 43.478 0.00 0.00 39.02 2.52
149 150 3.427573 TGATCCAGTAAGGTGTCGAGAA 58.572 45.455 0.00 0.00 39.02 2.87
150 151 3.081710 TGATCCAGTAAGGTGTCGAGA 57.918 47.619 0.00 0.00 39.02 4.04
151 152 3.444034 TCTTGATCCAGTAAGGTGTCGAG 59.556 47.826 0.00 0.00 39.02 4.04
152 153 3.427573 TCTTGATCCAGTAAGGTGTCGA 58.572 45.455 0.00 0.00 39.02 4.20
153 154 3.868757 TCTTGATCCAGTAAGGTGTCG 57.131 47.619 0.00 0.00 39.02 4.35
154 155 4.508662 CCTTCTTGATCCAGTAAGGTGTC 58.491 47.826 12.84 0.00 39.02 3.67
155 156 3.307762 GCCTTCTTGATCCAGTAAGGTGT 60.308 47.826 18.10 0.00 39.15 4.16
156 157 3.054802 AGCCTTCTTGATCCAGTAAGGTG 60.055 47.826 18.10 3.53 39.15 4.00
157 158 3.185455 AGCCTTCTTGATCCAGTAAGGT 58.815 45.455 18.10 8.86 39.15 3.50
158 159 3.922171 AGCCTTCTTGATCCAGTAAGG 57.078 47.619 15.10 15.10 39.78 2.69
159 160 4.202305 CCCTAGCCTTCTTGATCCAGTAAG 60.202 50.000 0.00 0.00 0.00 2.34
160 161 3.711704 CCCTAGCCTTCTTGATCCAGTAA 59.288 47.826 0.00 0.00 0.00 2.24
161 162 3.309296 CCCTAGCCTTCTTGATCCAGTA 58.691 50.000 0.00 0.00 0.00 2.74
162 163 2.122768 CCCTAGCCTTCTTGATCCAGT 58.877 52.381 0.00 0.00 0.00 4.00
163 164 1.202746 GCCCTAGCCTTCTTGATCCAG 60.203 57.143 0.00 0.00 0.00 3.86
164 165 0.839946 GCCCTAGCCTTCTTGATCCA 59.160 55.000 0.00 0.00 0.00 3.41
165 166 0.250081 CGCCCTAGCCTTCTTGATCC 60.250 60.000 0.00 0.00 34.57 3.36
166 167 0.466124 ACGCCCTAGCCTTCTTGATC 59.534 55.000 0.00 0.00 34.57 2.92
167 168 0.466124 GACGCCCTAGCCTTCTTGAT 59.534 55.000 0.00 0.00 34.57 2.57
168 169 0.902984 TGACGCCCTAGCCTTCTTGA 60.903 55.000 0.00 0.00 34.57 3.02
169 170 0.179000 ATGACGCCCTAGCCTTCTTG 59.821 55.000 0.00 0.00 34.57 3.02
170 171 0.466124 GATGACGCCCTAGCCTTCTT 59.534 55.000 0.00 0.00 34.57 2.52
171 172 1.739338 CGATGACGCCCTAGCCTTCT 61.739 60.000 0.00 0.00 34.57 2.85
172 173 1.300233 CGATGACGCCCTAGCCTTC 60.300 63.158 0.00 0.00 34.57 3.46
173 174 2.815308 CGATGACGCCCTAGCCTT 59.185 61.111 0.00 0.00 34.57 4.35
184 185 1.299165 ATACGTCCAGCGCGATGAC 60.299 57.895 28.29 19.81 46.11 3.06
185 186 1.299089 CATACGTCCAGCGCGATGA 60.299 57.895 28.29 9.32 46.11 2.92
186 187 2.932083 GCATACGTCCAGCGCGATG 61.932 63.158 19.16 19.16 46.11 3.84
187 188 2.658593 GCATACGTCCAGCGCGAT 60.659 61.111 12.10 0.00 46.11 4.58
188 189 4.123009 TGCATACGTCCAGCGCGA 62.123 61.111 12.10 0.00 46.11 5.87
189 190 3.620428 CTGCATACGTCCAGCGCG 61.620 66.667 0.00 0.00 46.11 6.86
190 191 1.809619 TTCTGCATACGTCCAGCGC 60.810 57.895 0.00 0.00 46.11 5.92
192 193 1.281899 GAGTTCTGCATACGTCCAGC 58.718 55.000 0.00 0.00 0.00 4.85
193 194 1.550065 CGAGTTCTGCATACGTCCAG 58.450 55.000 0.00 0.00 0.00 3.86
194 195 0.172578 CCGAGTTCTGCATACGTCCA 59.827 55.000 0.00 0.00 0.00 4.02
195 196 0.454600 TCCGAGTTCTGCATACGTCC 59.545 55.000 0.00 0.00 0.00 4.79
196 197 1.534175 CCTCCGAGTTCTGCATACGTC 60.534 57.143 0.00 0.00 0.00 4.34
197 198 0.456221 CCTCCGAGTTCTGCATACGT 59.544 55.000 0.00 0.00 0.00 3.57
198 199 0.456221 ACCTCCGAGTTCTGCATACG 59.544 55.000 0.00 0.00 0.00 3.06
199 200 1.204941 ACACCTCCGAGTTCTGCATAC 59.795 52.381 0.00 0.00 0.00 2.39
200 201 1.476891 GACACCTCCGAGTTCTGCATA 59.523 52.381 0.00 0.00 0.00 3.14
201 202 0.247736 GACACCTCCGAGTTCTGCAT 59.752 55.000 0.00 0.00 0.00 3.96
202 203 1.666011 GACACCTCCGAGTTCTGCA 59.334 57.895 0.00 0.00 0.00 4.41
203 204 1.444553 CGACACCTCCGAGTTCTGC 60.445 63.158 0.00 0.00 0.00 4.26
204 205 1.135746 GTACGACACCTCCGAGTTCTG 60.136 57.143 0.00 0.00 0.00 3.02
205 206 1.163554 GTACGACACCTCCGAGTTCT 58.836 55.000 0.00 0.00 0.00 3.01
206 207 0.179205 CGTACGACACCTCCGAGTTC 60.179 60.000 10.44 0.00 0.00 3.01
207 208 0.886490 ACGTACGACACCTCCGAGTT 60.886 55.000 24.41 0.00 0.00 3.01
208 209 0.886490 AACGTACGACACCTCCGAGT 60.886 55.000 24.41 0.00 0.00 4.18
209 210 0.179205 GAACGTACGACACCTCCGAG 60.179 60.000 24.41 0.00 0.00 4.63
210 211 1.868997 GAACGTACGACACCTCCGA 59.131 57.895 24.41 0.00 0.00 4.55
211 212 1.510623 CGAACGTACGACACCTCCG 60.511 63.158 24.41 9.78 35.09 4.63
212 213 1.154150 CCGAACGTACGACACCTCC 60.154 63.158 24.41 1.65 35.09 4.30
213 214 0.727122 CACCGAACGTACGACACCTC 60.727 60.000 24.41 8.85 35.09 3.85
214 215 1.283793 CACCGAACGTACGACACCT 59.716 57.895 24.41 0.00 35.09 4.00
215 216 2.367344 GCACCGAACGTACGACACC 61.367 63.158 24.41 6.58 35.09 4.16
216 217 0.936297 AAGCACCGAACGTACGACAC 60.936 55.000 24.41 11.22 35.09 3.67
217 218 0.935831 CAAGCACCGAACGTACGACA 60.936 55.000 24.41 0.00 35.09 4.35
218 219 0.661187 TCAAGCACCGAACGTACGAC 60.661 55.000 24.41 14.09 35.09 4.34
219 220 0.241749 ATCAAGCACCGAACGTACGA 59.758 50.000 24.41 0.00 35.09 3.43
220 221 0.638746 GATCAAGCACCGAACGTACG 59.361 55.000 15.01 15.01 0.00 3.67
221 222 0.638746 CGATCAAGCACCGAACGTAC 59.361 55.000 0.00 0.00 0.00 3.67
222 223 0.457166 CCGATCAAGCACCGAACGTA 60.457 55.000 0.00 0.00 0.00 3.57
223 224 1.736645 CCGATCAAGCACCGAACGT 60.737 57.895 0.00 0.00 0.00 3.99
224 225 1.683790 GACCGATCAAGCACCGAACG 61.684 60.000 0.00 0.00 0.00 3.95
225 226 1.683790 CGACCGATCAAGCACCGAAC 61.684 60.000 0.00 0.00 0.00 3.95
226 227 1.445410 CGACCGATCAAGCACCGAA 60.445 57.895 0.00 0.00 0.00 4.30
227 228 2.180769 CGACCGATCAAGCACCGA 59.819 61.111 0.00 0.00 0.00 4.69
228 229 2.629050 ATCCGACCGATCAAGCACCG 62.629 60.000 0.00 0.00 0.00 4.94
229 230 0.876342 GATCCGACCGATCAAGCACC 60.876 60.000 0.00 0.00 45.92 5.01
230 231 2.594541 GATCCGACCGATCAAGCAC 58.405 57.895 0.00 0.00 45.92 4.40
236 237 4.832590 TTTCTTCTAGATCCGACCGATC 57.167 45.455 0.00 0.00 46.86 3.69
237 238 5.563085 CGAATTTCTTCTAGATCCGACCGAT 60.563 44.000 0.00 0.00 0.00 4.18
238 239 4.261072 CGAATTTCTTCTAGATCCGACCGA 60.261 45.833 0.00 0.00 0.00 4.69
239 240 3.975670 CGAATTTCTTCTAGATCCGACCG 59.024 47.826 0.00 0.00 0.00 4.79
240 241 4.977347 GTCGAATTTCTTCTAGATCCGACC 59.023 45.833 0.00 0.00 38.21 4.79
241 242 5.823353 AGTCGAATTTCTTCTAGATCCGAC 58.177 41.667 0.00 0.00 42.59 4.79
242 243 6.541278 TGTAGTCGAATTTCTTCTAGATCCGA 59.459 38.462 0.00 0.00 0.00 4.55
243 244 6.726230 TGTAGTCGAATTTCTTCTAGATCCG 58.274 40.000 0.00 0.00 0.00 4.18
244 245 8.353684 TGATGTAGTCGAATTTCTTCTAGATCC 58.646 37.037 19.44 10.68 33.45 3.36
245 246 9.737427 TTGATGTAGTCGAATTTCTTCTAGATC 57.263 33.333 17.55 17.55 34.32 2.75
247 248 9.355215 GTTTGATGTAGTCGAATTTCTTCTAGA 57.645 33.333 0.00 0.00 32.89 2.43
248 249 8.314635 CGTTTGATGTAGTCGAATTTCTTCTAG 58.685 37.037 0.00 0.00 32.89 2.43
249 250 7.201410 GCGTTTGATGTAGTCGAATTTCTTCTA 60.201 37.037 0.00 0.00 32.89 2.10
250 251 6.401153 GCGTTTGATGTAGTCGAATTTCTTCT 60.401 38.462 0.00 0.00 32.89 2.85
251 252 5.728507 GCGTTTGATGTAGTCGAATTTCTTC 59.271 40.000 0.00 0.00 32.89 2.87
252 253 5.618561 GCGTTTGATGTAGTCGAATTTCTT 58.381 37.500 0.00 0.00 32.89 2.52
253 254 4.201589 CGCGTTTGATGTAGTCGAATTTCT 60.202 41.667 0.00 0.00 32.89 2.52
254 255 4.013397 CGCGTTTGATGTAGTCGAATTTC 58.987 43.478 0.00 0.00 32.89 2.17
255 256 3.430895 ACGCGTTTGATGTAGTCGAATTT 59.569 39.130 5.58 0.00 32.89 1.82
256 257 2.991190 ACGCGTTTGATGTAGTCGAATT 59.009 40.909 5.58 0.00 32.89 2.17
257 258 2.602878 ACGCGTTTGATGTAGTCGAAT 58.397 42.857 5.58 0.00 32.89 3.34
258 259 2.054687 ACGCGTTTGATGTAGTCGAA 57.945 45.000 5.58 0.00 0.00 3.71
259 260 1.717113 CAACGCGTTTGATGTAGTCGA 59.283 47.619 24.21 0.00 37.39 4.20
260 261 1.454276 ACAACGCGTTTGATGTAGTCG 59.546 47.619 24.21 9.45 38.73 4.18
261 262 2.473609 TGACAACGCGTTTGATGTAGTC 59.526 45.455 24.21 22.94 38.73 2.59
262 263 2.475818 TGACAACGCGTTTGATGTAGT 58.524 42.857 24.21 15.30 38.73 2.73
263 264 3.513462 TTGACAACGCGTTTGATGTAG 57.487 42.857 24.21 11.81 38.73 2.74
264 265 3.609475 GTTTGACAACGCGTTTGATGTA 58.391 40.909 24.21 0.52 38.73 2.29
265 266 2.446282 GTTTGACAACGCGTTTGATGT 58.554 42.857 24.21 18.47 38.73 3.06
287 288 2.470196 TCGTAGATCGAAAGCGGAAG 57.530 50.000 0.00 0.00 45.98 3.46
296 297 1.575244 CACGTACCCTCGTAGATCGA 58.425 55.000 0.00 0.00 46.83 3.59
297 298 0.585357 CCACGTACCCTCGTAGATCG 59.415 60.000 0.00 0.00 42.27 3.69
298 299 1.601430 GTCCACGTACCCTCGTAGATC 59.399 57.143 0.00 0.00 42.27 2.75
299 300 1.065199 TGTCCACGTACCCTCGTAGAT 60.065 52.381 0.00 0.00 42.27 1.98
300 301 0.324614 TGTCCACGTACCCTCGTAGA 59.675 55.000 0.00 0.00 42.27 2.59
301 302 0.449388 GTGTCCACGTACCCTCGTAG 59.551 60.000 0.00 0.00 42.27 3.51
302 303 0.250684 TGTGTCCACGTACCCTCGTA 60.251 55.000 0.00 0.00 42.27 3.43
303 304 1.529010 TGTGTCCACGTACCCTCGT 60.529 57.895 0.00 0.00 45.10 4.18
304 305 1.080974 GTGTGTCCACGTACCCTCG 60.081 63.158 0.00 0.00 0.00 4.63
305 306 0.243095 GAGTGTGTCCACGTACCCTC 59.757 60.000 0.00 0.00 46.56 4.30
306 307 0.178970 AGAGTGTGTCCACGTACCCT 60.179 55.000 0.00 0.00 46.56 4.34
307 308 0.243095 GAGAGTGTGTCCACGTACCC 59.757 60.000 0.00 0.00 46.56 3.69
308 309 0.243095 GGAGAGTGTGTCCACGTACC 59.757 60.000 0.00 0.00 46.56 3.34
309 310 0.956633 TGGAGAGTGTGTCCACGTAC 59.043 55.000 0.00 0.00 46.56 3.67
310 311 3.425122 TGGAGAGTGTGTCCACGTA 57.575 52.632 0.00 0.00 46.56 3.57
311 312 4.270482 TGGAGAGTGTGTCCACGT 57.730 55.556 0.00 0.00 46.56 4.49
314 315 0.188587 AGAGGTGGAGAGTGTGTCCA 59.811 55.000 0.00 0.00 42.06 4.02
315 316 0.892063 GAGAGGTGGAGAGTGTGTCC 59.108 60.000 0.00 0.00 34.31 4.02
316 317 0.523966 CGAGAGGTGGAGAGTGTGTC 59.476 60.000 0.00 0.00 0.00 3.67
317 318 0.178987 ACGAGAGGTGGAGAGTGTGT 60.179 55.000 0.00 0.00 0.00 3.72
318 319 0.962489 AACGAGAGGTGGAGAGTGTG 59.038 55.000 0.00 0.00 0.00 3.82
319 320 3.441241 AACGAGAGGTGGAGAGTGT 57.559 52.632 0.00 0.00 0.00 3.55
328 329 1.759445 AGATGCATAGCAACGAGAGGT 59.241 47.619 0.00 0.00 43.62 3.85
329 330 2.522836 AGATGCATAGCAACGAGAGG 57.477 50.000 0.00 0.00 43.62 3.69
330 331 3.715495 AGAAGATGCATAGCAACGAGAG 58.285 45.455 0.00 0.00 43.62 3.20
331 332 3.808466 AGAAGATGCATAGCAACGAGA 57.192 42.857 0.00 0.00 43.62 4.04
332 333 4.864633 TCTAGAAGATGCATAGCAACGAG 58.135 43.478 0.00 0.00 43.62 4.18
333 334 4.918810 TCTAGAAGATGCATAGCAACGA 57.081 40.909 0.00 0.00 43.62 3.85
334 335 6.616017 TCTATCTAGAAGATGCATAGCAACG 58.384 40.000 0.00 0.00 43.62 4.10
335 336 8.469200 AGATCTATCTAGAAGATGCATAGCAAC 58.531 37.037 17.03 0.00 37.77 4.17
336 337 8.592529 AGATCTATCTAGAAGATGCATAGCAA 57.407 34.615 17.03 0.00 37.77 3.91
337 338 8.468399 CAAGATCTATCTAGAAGATGCATAGCA 58.532 37.037 17.03 0.00 38.57 3.49
338 339 7.436080 GCAAGATCTATCTAGAAGATGCATAGC 59.564 40.741 17.03 11.67 37.63 2.97
339 340 7.644945 CGCAAGATCTATCTAGAAGATGCATAG 59.355 40.741 17.03 5.41 37.60 2.23
340 341 7.121907 ACGCAAGATCTATCTAGAAGATGCATA 59.878 37.037 17.03 0.00 37.60 3.14
341 342 6.071447 ACGCAAGATCTATCTAGAAGATGCAT 60.071 38.462 17.03 0.00 37.60 3.96
342 343 5.242615 ACGCAAGATCTATCTAGAAGATGCA 59.757 40.000 17.03 0.00 37.60 3.96
343 344 5.572511 CACGCAAGATCTATCTAGAAGATGC 59.427 44.000 17.03 15.04 36.70 3.91
344 345 6.907741 TCACGCAAGATCTATCTAGAAGATG 58.092 40.000 17.03 9.37 36.70 2.90
345 346 6.349280 GCTCACGCAAGATCTATCTAGAAGAT 60.349 42.308 13.81 13.81 38.77 2.40
346 347 5.049060 GCTCACGCAAGATCTATCTAGAAGA 60.049 44.000 0.00 1.80 43.62 2.87
347 348 5.153513 GCTCACGCAAGATCTATCTAGAAG 58.846 45.833 0.00 0.00 43.62 2.85
348 349 4.022762 GGCTCACGCAAGATCTATCTAGAA 60.023 45.833 0.00 0.00 43.62 2.10
349 350 3.504134 GGCTCACGCAAGATCTATCTAGA 59.496 47.826 0.00 0.00 43.62 2.43
350 351 3.505680 AGGCTCACGCAAGATCTATCTAG 59.494 47.826 0.00 0.00 43.62 2.43
351 352 3.491342 AGGCTCACGCAAGATCTATCTA 58.509 45.455 0.00 0.00 43.62 1.98
352 353 2.315176 AGGCTCACGCAAGATCTATCT 58.685 47.619 0.00 0.00 43.62 1.98
353 354 2.810439 AGGCTCACGCAAGATCTATC 57.190 50.000 0.00 0.00 43.62 2.08
354 355 2.560542 CCTAGGCTCACGCAAGATCTAT 59.439 50.000 0.00 0.00 43.62 1.98
355 356 1.957177 CCTAGGCTCACGCAAGATCTA 59.043 52.381 0.00 0.00 43.62 1.98
356 357 0.749649 CCTAGGCTCACGCAAGATCT 59.250 55.000 0.00 0.00 43.62 2.75
357 358 0.747255 TCCTAGGCTCACGCAAGATC 59.253 55.000 2.96 0.00 43.62 2.75
358 359 1.195115 TTCCTAGGCTCACGCAAGAT 58.805 50.000 2.96 0.00 43.62 2.40
359 360 0.973632 TTTCCTAGGCTCACGCAAGA 59.026 50.000 2.96 0.00 43.62 3.02
361 362 2.264005 TTTTTCCTAGGCTCACGCAA 57.736 45.000 2.96 0.00 38.10 4.85
380 381 8.676401 GGGAAATGTAGCATGCAATTTAAATTT 58.324 29.630 21.98 15.27 31.62 1.82
381 382 7.828223 TGGGAAATGTAGCATGCAATTTAAATT 59.172 29.630 21.98 7.64 31.62 1.82
382 383 7.337167 TGGGAAATGTAGCATGCAATTTAAAT 58.663 30.769 21.98 0.65 31.62 1.40
383 384 6.705302 TGGGAAATGTAGCATGCAATTTAAA 58.295 32.000 21.98 8.72 31.62 1.52
384 385 6.291648 TGGGAAATGTAGCATGCAATTTAA 57.708 33.333 21.98 9.02 31.62 1.52
385 386 5.929058 TGGGAAATGTAGCATGCAATTTA 57.071 34.783 21.98 0.00 31.62 1.40
386 387 4.822685 TGGGAAATGTAGCATGCAATTT 57.177 36.364 21.98 20.58 31.62 1.82
387 388 4.020396 TGTTGGGAAATGTAGCATGCAATT 60.020 37.500 21.98 13.44 31.62 2.32
388 389 3.514706 TGTTGGGAAATGTAGCATGCAAT 59.485 39.130 21.98 7.61 31.62 3.56
389 390 2.896044 TGTTGGGAAATGTAGCATGCAA 59.104 40.909 21.98 5.23 31.62 4.08
390 391 2.523245 TGTTGGGAAATGTAGCATGCA 58.477 42.857 21.98 2.77 33.12 3.96
391 392 3.193267 TCTTGTTGGGAAATGTAGCATGC 59.807 43.478 10.51 10.51 0.00 4.06
392 393 5.125900 TGATCTTGTTGGGAAATGTAGCATG 59.874 40.000 0.00 0.00 0.00 4.06
393 394 5.263599 TGATCTTGTTGGGAAATGTAGCAT 58.736 37.500 0.00 0.00 0.00 3.79
394 395 4.661222 TGATCTTGTTGGGAAATGTAGCA 58.339 39.130 0.00 0.00 0.00 3.49
395 396 5.643379 TTGATCTTGTTGGGAAATGTAGC 57.357 39.130 0.00 0.00 0.00 3.58
396 397 9.740239 CAATATTGATCTTGTTGGGAAATGTAG 57.260 33.333 10.04 0.00 0.00 2.74
397 398 9.473007 TCAATATTGATCTTGTTGGGAAATGTA 57.527 29.630 14.23 0.00 31.01 2.29
398 399 8.365060 TCAATATTGATCTTGTTGGGAAATGT 57.635 30.769 14.23 0.00 31.01 2.71
399 400 8.689061 TCTCAATATTGATCTTGTTGGGAAATG 58.311 33.333 18.26 1.80 36.46 2.32
400 401 8.827832 TCTCAATATTGATCTTGTTGGGAAAT 57.172 30.769 18.26 0.00 36.46 2.17
401 402 8.827832 ATCTCAATATTGATCTTGTTGGGAAA 57.172 30.769 18.26 0.00 33.46 3.13
402 403 7.227314 CGATCTCAATATTGATCTTGTTGGGAA 59.773 37.037 18.26 0.00 37.51 3.97
403 404 6.707608 CGATCTCAATATTGATCTTGTTGGGA 59.292 38.462 18.26 9.23 37.51 4.37
404 405 6.072838 CCGATCTCAATATTGATCTTGTTGGG 60.073 42.308 18.26 8.78 37.51 4.12
405 406 6.484643 ACCGATCTCAATATTGATCTTGTTGG 59.515 38.462 18.26 15.75 37.51 3.77
406 407 7.350467 CACCGATCTCAATATTGATCTTGTTG 58.650 38.462 18.26 7.87 37.51 3.33
407 408 6.484643 CCACCGATCTCAATATTGATCTTGTT 59.515 38.462 18.26 2.60 37.51 2.83
408 409 5.994054 CCACCGATCTCAATATTGATCTTGT 59.006 40.000 18.26 10.68 37.51 3.16
409 410 5.106791 GCCACCGATCTCAATATTGATCTTG 60.107 44.000 18.26 12.44 37.51 3.02
413 414 3.072915 TGGCCACCGATCTCAATATTGAT 59.927 43.478 18.26 4.93 36.46 2.57
415 416 2.549754 GTGGCCACCGATCTCAATATTG 59.450 50.000 26.31 9.29 0.00 1.90
448 449 8.165267 AGATACCATCAGCTAGGTAGTATACT 57.835 38.462 10.87 10.87 43.15 2.12
513 514 5.725551 TCTCTTCCTCTTCTCTCCTACAT 57.274 43.478 0.00 0.00 0.00 2.29
528 529 5.010012 TGTTGCTCTTGGAAAAATCTCTTCC 59.990 40.000 0.00 0.00 42.41 3.46
532 533 6.199719 CACTTTGTTGCTCTTGGAAAAATCTC 59.800 38.462 0.00 0.00 0.00 2.75
539 540 4.338118 CCTAACACTTTGTTGCTCTTGGAA 59.662 41.667 1.73 0.00 41.30 3.53
546 547 4.164843 TCCTTCCTAACACTTTGTTGCT 57.835 40.909 1.73 0.00 41.30 3.91
547 548 4.278419 ACATCCTTCCTAACACTTTGTTGC 59.722 41.667 1.73 0.00 41.30 4.17
551 552 5.335191 GCTTCACATCCTTCCTAACACTTTG 60.335 44.000 0.00 0.00 0.00 2.77
553 554 4.202461 TGCTTCACATCCTTCCTAACACTT 60.202 41.667 0.00 0.00 0.00 3.16
558 559 3.282021 GCATGCTTCACATCCTTCCTAA 58.718 45.455 11.37 0.00 36.64 2.69
572 573 1.708341 AGAACACCAAAGGCATGCTT 58.292 45.000 18.92 7.19 0.00 3.91
575 576 3.731652 TTGAAGAACACCAAAGGCATG 57.268 42.857 0.00 0.00 0.00 4.06
576 577 4.961438 AATTGAAGAACACCAAAGGCAT 57.039 36.364 0.00 0.00 0.00 4.40
584 585 4.568956 CCCCATCAAAATTGAAGAACACC 58.431 43.478 0.00 0.00 41.13 4.16
597 598 1.029408 CCGAACGATGCCCCATCAAA 61.029 55.000 6.09 0.00 40.54 2.69
599 600 1.331399 TACCGAACGATGCCCCATCA 61.331 55.000 6.09 0.00 40.54 3.07
611 612 7.605410 TTCAAATTCTACCAGAATACCGAAC 57.395 36.000 2.00 0.00 43.67 3.95
618 619 5.324409 TGGTGCTTCAAATTCTACCAGAAT 58.676 37.500 0.00 0.00 46.22 2.40
620 621 4.365514 TGGTGCTTCAAATTCTACCAGA 57.634 40.909 0.00 0.00 33.60 3.86
621 622 4.761739 TCTTGGTGCTTCAAATTCTACCAG 59.238 41.667 0.00 0.00 39.16 4.00
624 625 6.319141 ACTTCTTGGTGCTTCAAATTCTAC 57.681 37.500 0.00 0.00 0.00 2.59
630 631 3.119173 CCACAACTTCTTGGTGCTTCAAA 60.119 43.478 0.00 0.00 36.69 2.69
634 635 1.064017 TCCCACAACTTCTTGGTGCTT 60.064 47.619 0.00 0.00 36.69 3.91
643 644 3.409026 ACTCATCACTCCCACAACTTC 57.591 47.619 0.00 0.00 0.00 3.01
662 664 3.748048 ACTGTGCATGATCACACAAGTAC 59.252 43.478 17.08 7.57 45.55 2.73
683 685 5.037015 ACGCTCATTCTCTACGATCATAC 57.963 43.478 0.00 0.00 0.00 2.39
684 686 4.154375 GGACGCTCATTCTCTACGATCATA 59.846 45.833 0.00 0.00 0.00 2.15
703 705 2.095532 GGTCGTAGATATCATCCGGACG 59.904 54.545 6.12 0.00 40.67 4.79
709 711 5.470047 AACCCTTGGTCGTAGATATCATC 57.530 43.478 5.32 0.00 40.67 2.92
714 716 6.610075 AACTAAAACCCTTGGTCGTAGATA 57.390 37.500 9.11 0.00 40.67 1.98
720 722 4.904253 TTGAAACTAAAACCCTTGGTCG 57.096 40.909 0.00 0.00 33.12 4.79
723 725 6.155475 TCACATTGAAACTAAAACCCTTGG 57.845 37.500 0.00 0.00 0.00 3.61
733 735 5.982516 GCACACCATTTTCACATTGAAACTA 59.017 36.000 0.78 0.00 45.03 2.24
735 737 4.810491 AGCACACCATTTTCACATTGAAAC 59.190 37.500 0.78 0.00 45.03 2.78
741 743 3.553508 GCTCAAGCACACCATTTTCACAT 60.554 43.478 0.00 0.00 41.59 3.21
742 744 2.223782 GCTCAAGCACACCATTTTCACA 60.224 45.455 0.00 0.00 41.59 3.58
758 760 0.037160 TGCTGCTCTTCCATGCTCAA 59.963 50.000 0.00 0.00 0.00 3.02
759 761 0.037160 TTGCTGCTCTTCCATGCTCA 59.963 50.000 0.00 0.00 0.00 4.26
769 771 5.939883 TGAACTGTGTAAATATTGCTGCTCT 59.060 36.000 0.00 0.00 0.00 4.09
784 786 7.888424 TGATGATGAAATTCAATGAACTGTGT 58.112 30.769 0.00 0.00 0.00 3.72
794 796 9.720667 GATCACGTATTTGATGATGAAATTCAA 57.279 29.630 0.00 0.00 36.30 2.69
795 797 8.063630 CGATCACGTATTTGATGATGAAATTCA 58.936 33.333 0.00 0.00 36.30 2.57
813 815 2.758979 AGTATGAGTTTCCCGATCACGT 59.241 45.455 0.00 0.00 37.88 4.49
820 822 4.250464 TGCAGTTAAGTATGAGTTTCCCG 58.750 43.478 0.00 0.00 0.00 5.14
823 825 4.695455 TGCCTGCAGTTAAGTATGAGTTTC 59.305 41.667 13.81 0.00 0.00 2.78
831 833 5.252547 TCATTGATTGCCTGCAGTTAAGTA 58.747 37.500 13.81 0.00 0.00 2.24
833 835 4.707030 TCATTGATTGCCTGCAGTTAAG 57.293 40.909 13.81 0.00 0.00 1.85
835 837 3.119884 CGTTCATTGATTGCCTGCAGTTA 60.120 43.478 13.81 0.00 0.00 2.24
840 842 3.621794 GATACGTTCATTGATTGCCTGC 58.378 45.455 0.00 0.00 0.00 4.85
848 884 8.697846 AGAAAAATAGACGATACGTTCATTGA 57.302 30.769 0.00 0.00 41.37 2.57
853 889 9.801714 TTTGAAAGAAAAATAGACGATACGTTC 57.198 29.630 0.00 0.00 41.37 3.95
856 892 9.210426 CCATTTGAAAGAAAAATAGACGATACG 57.790 33.333 0.00 0.00 0.00 3.06
861 897 8.795786 TCAACCATTTGAAAGAAAAATAGACG 57.204 30.769 0.00 0.00 38.87 4.18
863 899 9.965824 GTCTCAACCATTTGAAAGAAAAATAGA 57.034 29.630 0.00 0.00 41.34 1.98
866 902 9.617523 ATTGTCTCAACCATTTGAAAGAAAAAT 57.382 25.926 0.00 0.00 41.34 1.82
881 917 9.260002 ACAAATAAATGTTCAATTGTCTCAACC 57.740 29.630 5.13 0.00 0.00 3.77
927 963 9.624697 GCAACTCATAGTTTGACAATCAAATAA 57.375 29.630 7.22 0.29 46.55 1.40
934 970 6.233434 TCAGAGCAACTCATAGTTTGACAAT 58.767 36.000 0.00 0.00 36.03 2.71
939 975 3.373439 GGCTCAGAGCAACTCATAGTTTG 59.627 47.826 24.09 0.00 44.75 2.93
1034 1070 4.864704 TTTGGAATTTTGGACTAGGCAC 57.135 40.909 0.00 0.00 0.00 5.01
1271 1313 2.395651 GCAGATGGCAAGCAGAGAG 58.604 57.895 0.00 0.00 43.97 3.20
1272 1314 4.631773 GCAGATGGCAAGCAGAGA 57.368 55.556 0.00 0.00 43.97 3.10
1394 1437 5.823045 ACAATCCGACCCTAGAATTTGAATC 59.177 40.000 0.00 0.00 0.00 2.52
1718 1764 1.150536 TAGCCAATGGATTCCCGGC 59.849 57.895 16.37 16.37 43.31 6.13
1736 1782 1.000955 CACCTCAGCTTTACCGACAGT 59.999 52.381 0.00 0.00 0.00 3.55
1760 1806 3.231736 AGGTCCTGCCGTGAACGT 61.232 61.111 1.75 0.00 43.70 3.99
1763 1809 1.488705 AATCCAGGTCCTGCCGTGAA 61.489 55.000 13.99 0.00 43.70 3.18
1909 1955 5.482163 TGAGACATCATTGGTGTGTTAGA 57.518 39.130 7.42 0.00 0.00 2.10
1948 1994 4.500837 CAGACACAATAGATGCGTGTACTC 59.499 45.833 0.00 0.00 43.65 2.59
1952 1998 3.193479 TCTCAGACACAATAGATGCGTGT 59.807 43.478 0.00 0.00 46.16 4.49
1995 2041 1.864862 CACGAGAACTTGCAGCCTG 59.135 57.895 0.00 0.00 0.00 4.85
2069 2116 6.366061 TCTTCGACACATTATCAACACAGAAG 59.634 38.462 0.00 0.00 33.61 2.85
2083 2130 4.703897 TCAAAAGGAAGTCTTCGACACAT 58.296 39.130 6.50 0.00 34.60 3.21
2125 2172 4.325028 TGCAAATTTGAACAGCATGAGT 57.675 36.364 22.31 0.00 39.69 3.41
2142 2189 9.758651 ATATTAACACGACACTCTTATATGCAA 57.241 29.630 0.00 0.00 0.00 4.08
2219 2268 2.029110 GCACCAAACAGCCAACATGTAT 60.029 45.455 0.00 0.00 0.00 2.29
2316 2366 4.504858 CAGGTACCAACTACAGTCCATTC 58.495 47.826 15.94 0.00 0.00 2.67
2332 2382 4.398319 AGGTTATGCATATTGCCAGGTAC 58.602 43.478 7.36 0.00 44.23 3.34
2519 3818 7.770897 ACAAACGGCTAGAGATAAAAATGATCT 59.229 33.333 0.00 0.00 36.33 2.75
2702 4002 0.297820 GCAGTATTTCTTCGCGACGG 59.702 55.000 9.15 4.91 0.00 4.79
2822 4122 5.734720 GATGAAATCTCAACAGACCCAGTA 58.265 41.667 0.00 0.00 41.17 2.74
2879 4179 0.232303 GTCTGAAGCCGACAAACGTG 59.768 55.000 0.00 0.00 40.78 4.49
2927 4227 4.552767 CGGTGAATATCAATTGCCTCGTTC 60.553 45.833 0.00 1.91 0.00 3.95
3027 4327 1.921887 TCGCCGTTCAATAACATCGAC 59.078 47.619 0.00 0.00 35.46 4.20
3119 4419 2.357569 CCTCTTCCTTCCTTCCAATGGG 60.358 54.545 0.00 0.00 0.00 4.00
3184 4485 6.439058 AGTGGAGCTAGAAGAAGATACTTTGT 59.561 38.462 0.00 0.00 0.00 2.83
3194 4495 1.279271 GGGCAAGTGGAGCTAGAAGAA 59.721 52.381 0.00 0.00 0.00 2.52
3239 4540 6.953101 TGGATTAGCAGTTTGTTGAGGTATA 58.047 36.000 0.00 0.00 0.00 1.47
3272 4573 1.546923 CTGGTTTGCCATGCTTGATCA 59.453 47.619 0.22 0.00 45.05 2.92
3326 4627 4.724399 TCCTTTGCAGTGATGGTTCTTTA 58.276 39.130 0.00 0.00 0.00 1.85
3329 4630 2.787994 CTCCTTTGCAGTGATGGTTCT 58.212 47.619 0.00 0.00 0.00 3.01
3332 4633 0.111061 TGCTCCTTTGCAGTGATGGT 59.889 50.000 0.00 0.00 38.12 3.55
3340 4641 0.467844 TTCCAAGCTGCTCCTTTGCA 60.468 50.000 1.00 0.00 41.05 4.08
3546 4847 1.134128 TCCACATATGGCTGATGCGTT 60.134 47.619 7.80 0.00 46.80 4.84
3568 4869 4.122776 GCAGTACCCATTATCTGTCACTG 58.877 47.826 0.00 0.00 36.18 3.66
3606 4907 0.392998 TCGCATCTTTCCCTTCCTGC 60.393 55.000 0.00 0.00 0.00 4.85
3749 5050 1.144936 CGCACATCTCTTCCTCCCC 59.855 63.158 0.00 0.00 0.00 4.81
4046 5857 1.327303 GGTGGTCACAGGCAAAATCA 58.673 50.000 3.40 0.00 0.00 2.57
4051 5862 1.770110 AGAGGGTGGTCACAGGCAA 60.770 57.895 3.40 0.00 0.00 4.52
4086 5898 8.236586 TCAAAATCGTGTTATCCAGAAATCAAG 58.763 33.333 0.00 0.00 0.00 3.02
4205 6024 2.663602 GACACGTGTGTTCTATCTGCAG 59.336 50.000 28.82 7.63 45.05 4.41
4212 6031 0.318360 CGCCTGACACGTGTGTTCTA 60.318 55.000 28.82 5.99 45.05 2.10
4228 6047 1.673808 AAGGATGACGTCTACCCGCC 61.674 60.000 17.92 8.68 0.00 6.13
4274 6093 2.256306 TCCCTTTTGATTTTGGAGGCC 58.744 47.619 0.00 0.00 0.00 5.19
4452 6287 4.365111 ATGGGCTTGGGCTTCGCA 62.365 61.111 0.00 0.00 38.73 5.10
4710 6609 1.076339 CTTCCTCCTCCTCGCTCCT 60.076 63.158 0.00 0.00 0.00 3.69
4862 6774 6.506500 ACTAAATCAATCAGTGCAGGAAAG 57.493 37.500 0.00 0.00 0.00 2.62
4983 7035 0.529378 CCAACAGAATGCCTTCCAGC 59.471 55.000 0.00 0.00 42.53 4.85


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.