Multiple sequence alignment - TraesCS2A01G191900
Loading Multiple Alignment...
BLAST Results
BLAST Results - Input Sequence
Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this
to extract flanking regions for cloning. If the result of the multiple sequence alignment is
not as expected, these results could be used for further investigation.
qseqid
sseqid
percentage.identical
alignment.length
no.mismatch
no.gap.openings
qstart
qend
sstart
send
evalue
bitscore
0
TraesCS2A01G191900
chr2A
100.000
2945
0
0
1
2945
159066094
159069038
0.000000e+00
5439.0
1
TraesCS2A01G191900
chr2D
93.921
2813
98
26
1
2779
142065635
142062862
0.000000e+00
4180.0
2
TraesCS2A01G191900
chr2D
90.141
71
7
0
2637
2707
412253715
412253785
3.130000e-15
93.5
3
TraesCS2A01G191900
chr2D
86.047
86
11
1
2624
2708
311544140
311544055
1.120000e-14
91.6
4
TraesCS2A01G191900
chr2D
89.091
55
5
1
2654
2708
55254722
55254775
1.890000e-07
67.6
5
TraesCS2A01G191900
chr2B
91.586
2888
120
40
119
2925
200083277
200080432
0.000000e+00
3873.0
6
TraesCS2A01G191900
chr2B
87.417
151
6
4
1
140
200083442
200083294
8.450000e-36
161.0
7
TraesCS2A01G191900
chr7B
88.372
86
9
1
2624
2708
682792116
682792031
5.190000e-18
102.0
8
TraesCS2A01G191900
chr4D
88.095
84
9
1
2626
2708
15550397
15550480
6.720000e-17
99.0
9
TraesCS2A01G191900
chr6D
84.884
86
12
1
2624
2708
27187607
27187522
5.230000e-13
86.1
10
TraesCS2A01G191900
chr6B
84.884
86
12
1
2624
2708
49827620
49827535
5.230000e-13
86.1
BLAST Results - HSPs grouped
These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the
BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are
purely upstream or downstream may be removed if they don't overlap both primers.
query
scaffold
start
end
length
rev.comp
avg.bitscore
max.bitscore
avg.percent.identical
query.start
query.end
num_hsp
groupid
homo_length
0
TraesCS2A01G191900
chr2A
159066094
159069038
2944
False
5439
5439
100.0000
1
2945
1
chr2A.!!$F1
2944
1
TraesCS2A01G191900
chr2D
142062862
142065635
2773
True
4180
4180
93.9210
1
2779
1
chr2D.!!$R1
2778
2
TraesCS2A01G191900
chr2B
200080432
200083442
3010
True
2017
3873
89.5015
1
2925
2
chr2B.!!$R1
2924
AutoCloner calculated primer pairs
These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3),
whilst remaining within the specified product range where possible.
Forward
Primers
Reverse
Primers
Position
MSA Position
Penalty
Sequence
TM
GC
Self any TH
Self end TH
Hairpin
End Stability
Orientation
539
628
0.179056
CGTGATTATCCGGTTGCCCT
60.179
55.0
0.0
0.0
0.0
5.19
F
Position
MSA Position
Penalty
Sequence
TM
GC
Self any TH
Self end TH
Hairpin
End Stability
Orientation
2364
2483
0.806868
AACATCACAGCCAATCAGCG
59.193
50.0
0.0
0.0
38.01
5.18
R
All possible primers
Listed here are all possible primers based on the multiple sequence alignment and SNPs generated
previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work
during PCR or sequencing,
these could be used as alternatives.
Forward
Primers
Reverse
Primers
Position
MSA Position
Penalty
Sequence
TM
GC
Self any TH
Self end TH
Hairpin
End Stability
66
74
2.263540
GCGGGTCAGCGGAAACTA
59.736
61.111
0.00
0.00
0.00
2.24
67
75
1.810030
GCGGGTCAGCGGAAACTAG
60.810
63.158
0.00
0.00
0.00
2.57
68
76
1.810030
CGGGTCAGCGGAAACTAGC
60.810
63.158
0.00
0.00
0.00
3.42
69
77
1.597461
GGGTCAGCGGAAACTAGCT
59.403
57.895
0.00
0.00
45.74
3.32
72
80
1.470112
GGTCAGCGGAAACTAGCTCTC
60.470
57.143
0.00
0.00
42.52
3.20
75
83
1.878975
GCGGAAACTAGCTCTCGCC
60.879
63.158
12.97
0.00
37.62
5.54
80
88
0.966370
AAACTAGCTCTCGCCCTCGT
60.966
55.000
0.00
0.00
36.60
4.18
100
108
3.602489
CGTGAATCACTGTGTACGTAGTG
59.398
47.826
18.27
18.27
44.31
2.74
166
215
2.115291
GCAGGGAAATCACGAGGGC
61.115
63.158
0.00
0.00
0.00
5.19
212
269
1.434696
GTGGAATCAATGCGGGCAG
59.565
57.895
0.00
0.00
0.00
4.85
248
308
3.067320
CAGGTCATGATCGAGCTAGTTGA
59.933
47.826
0.90
0.00
41.69
3.18
367
448
1.079127
AACAGGATCGACGGCAAGG
60.079
57.895
0.00
0.00
0.00
3.61
368
449
1.541310
AACAGGATCGACGGCAAGGA
61.541
55.000
0.00
0.00
0.00
3.36
405
486
0.244178
TTACGTACGCATGCACCTCA
59.756
50.000
19.57
0.00
0.00
3.86
425
506
3.144506
CATGGATTACCTGGTGCAGATC
58.855
50.000
10.23
7.55
37.04
2.75
431
512
1.226974
CCTGGTGCAGATCCGTACG
60.227
63.158
8.69
8.69
32.44
3.67
441
522
3.490419
GCAGATCCGTACGAAACTATGGT
60.490
47.826
18.76
0.00
0.00
3.55
461
548
9.774742
CTATGGTTTTGCTGTTACTTAGAAATC
57.225
33.333
0.00
0.00
0.00
2.17
514
601
3.939592
CGTCACCACTGATACAGTCTCTA
59.060
47.826
1.22
0.00
43.43
2.43
515
602
4.034626
CGTCACCACTGATACAGTCTCTAG
59.965
50.000
1.22
0.00
43.43
2.43
537
626
1.878953
ATCGTGATTATCCGGTTGCC
58.121
50.000
0.00
0.00
0.00
4.52
539
628
0.179056
CGTGATTATCCGGTTGCCCT
60.179
55.000
0.00
0.00
0.00
5.19
590
679
5.251999
GGAACGTCGAGCATATAACAATC
57.748
43.478
0.00
0.00
0.00
2.67
591
680
4.150098
GGAACGTCGAGCATATAACAATCC
59.850
45.833
0.00
0.00
0.00
3.01
592
681
3.305964
ACGTCGAGCATATAACAATCCG
58.694
45.455
0.00
0.00
0.00
4.18
593
682
2.661675
CGTCGAGCATATAACAATCCGG
59.338
50.000
0.00
0.00
0.00
5.14
600
689
6.560253
AGCATATAACAATCCGGACAATTC
57.440
37.500
6.12
0.00
0.00
2.17
622
711
4.079844
TCCCCATGCATACAATTCAGAAGA
60.080
41.667
0.00
0.00
0.00
2.87
710
817
2.474712
GCTTAACGCGGACACAGC
59.525
61.111
12.47
6.67
0.00
4.40
734
841
4.585162
ACTGGAGTAGTATTTCCCATCTCG
59.415
45.833
0.00
0.00
38.04
4.04
857
964
1.622607
AAATGATCGAGTCGCCCCCA
61.623
55.000
7.92
3.18
0.00
4.96
859
966
1.410850
ATGATCGAGTCGCCCCCAAT
61.411
55.000
7.92
0.00
0.00
3.16
860
967
1.146263
GATCGAGTCGCCCCCAATT
59.854
57.895
7.92
0.00
0.00
2.32
861
968
0.463833
GATCGAGTCGCCCCCAATTT
60.464
55.000
7.92
0.00
0.00
1.82
862
969
0.463833
ATCGAGTCGCCCCCAATTTC
60.464
55.000
7.92
0.00
0.00
2.17
863
970
2.112815
CGAGTCGCCCCCAATTTCC
61.113
63.158
0.00
0.00
0.00
3.13
864
971
1.001393
GAGTCGCCCCCAATTTCCA
60.001
57.895
0.00
0.00
0.00
3.53
865
972
1.304134
AGTCGCCCCCAATTTCCAC
60.304
57.895
0.00
0.00
0.00
4.02
866
973
1.605165
GTCGCCCCCAATTTCCACA
60.605
57.895
0.00
0.00
0.00
4.17
909
1023
7.078228
CACAGAGGAACAGCTAAACAAATTAC
58.922
38.462
0.00
0.00
0.00
1.89
938
1052
1.021390
CGGAGCAAGTTACAGCCAGG
61.021
60.000
0.00
0.00
0.00
4.45
955
1069
3.486383
CCAGGTTCAGCTTGGAAGTTAA
58.514
45.455
0.00
0.00
46.27
2.01
970
1084
6.370453
TGGAAGTTAATCCCCTTTATAAGCC
58.630
40.000
0.00
0.00
38.82
4.35
1064
1178
3.876589
TTGACAAGGGCGAGCCGAC
62.877
63.158
8.14
0.00
36.85
4.79
1357
1471
4.742201
TCAAGCTGGCCGTCTCGC
62.742
66.667
0.00
0.00
0.00
5.03
1530
1644
4.467084
TGGGCGGACAAGGCGATC
62.467
66.667
0.00
0.00
37.59
3.69
1569
1683
3.120385
TTCGTGGCGATGCTGCTG
61.120
61.111
0.00
0.00
35.23
4.41
1795
1909
3.838271
GCTCCGGCGACCATGAGA
61.838
66.667
9.30
0.00
0.00
3.27
1899
2016
2.117156
TAGTAGCTCCGGCGACCAC
61.117
63.158
9.30
0.00
43.47
4.16
1914
2031
0.601841
ACCACGACGTGATTTCACCC
60.602
55.000
28.83
0.00
43.66
4.61
2089
2208
7.256756
AGAGCTGATTGTAGATTTGTAATGC
57.743
36.000
0.00
0.00
0.00
3.56
2090
2209
6.825213
AGAGCTGATTGTAGATTTGTAATGCA
59.175
34.615
0.00
0.00
0.00
3.96
2091
2210
7.501559
AGAGCTGATTGTAGATTTGTAATGCAT
59.498
33.333
0.00
0.00
0.00
3.96
2092
2211
7.423199
AGCTGATTGTAGATTTGTAATGCATG
58.577
34.615
0.00
0.00
0.00
4.06
2186
2305
1.191096
CATGCGCAACGATTTTAGGC
58.809
50.000
17.11
0.00
0.00
3.93
2204
2323
8.428186
TTTTAGGCATAAATTCCGTACACTAG
57.572
34.615
4.14
0.00
31.07
2.57
2348
2467
0.865769
GCGTTTAGCCATATGACGGG
59.134
55.000
13.69
0.00
40.81
5.28
2364
2483
4.196193
TGACGGGGATAAACATGTGAATC
58.804
43.478
0.00
5.62
0.00
2.52
2373
2492
3.770263
AACATGTGAATCGCTGATTGG
57.230
42.857
0.00
0.00
31.89
3.16
2374
2493
1.402968
ACATGTGAATCGCTGATTGGC
59.597
47.619
0.00
2.99
31.89
4.52
2423
2542
5.467735
GTCATTGGTCTACTTTGTTACCGTT
59.532
40.000
0.00
0.00
34.60
4.44
2534
2665
0.969894
CTCTTTGTCAGTCGGTCCCT
59.030
55.000
0.00
0.00
0.00
4.20
2603
2736
3.066380
TCCACCGCATCATATTTGATCG
58.934
45.455
0.00
3.99
40.70
3.69
2614
2747
2.214376
ATTTGATCGCACCTTCCCAA
57.786
45.000
0.00
0.00
0.00
4.12
2631
2764
1.001020
AATGCGCCCCTCAATCACA
60.001
52.632
4.18
0.00
0.00
3.58
2647
2780
8.960591
CCTCAATCACATTGATTACTTACCTTT
58.039
33.333
1.14
0.00
44.60
3.11
2719
2852
1.471287
GTAAATCACCGCACCTTTCCC
59.529
52.381
0.00
0.00
0.00
3.97
2723
2856
3.868985
ACCGCACCTTTCCCGTGT
61.869
61.111
0.00
0.00
33.61
4.49
2767
2900
6.402981
ACTTACCCTCTAAACCAATTCCAT
57.597
37.500
0.00
0.00
0.00
3.41
2797
2930
9.797556
AATTTACTTACCAAACTTCTCACAAAC
57.202
29.630
0.00
0.00
0.00
2.93
2799
2932
9.669887
TTTACTTACCAAACTTCTCACAAACTA
57.330
29.630
0.00
0.00
0.00
2.24
2800
2933
9.841295
TTACTTACCAAACTTCTCACAAACTAT
57.159
29.630
0.00
0.00
0.00
2.12
2806
2939
7.084486
CCAAACTTCTCACAAACTATAAAGGC
58.916
38.462
0.00
0.00
0.00
4.35
2807
2940
6.481954
AACTTCTCACAAACTATAAAGGCG
57.518
37.500
0.00
0.00
0.00
5.52
2808
2941
4.935808
ACTTCTCACAAACTATAAAGGCGG
59.064
41.667
0.00
0.00
0.00
6.13
2809
2942
3.869065
TCTCACAAACTATAAAGGCGGG
58.131
45.455
0.00
0.00
0.00
6.13
2838
2982
4.723879
AAACATTTATTTGCACAACCGC
57.276
36.364
0.00
0.00
0.00
5.68
2850
2994
3.066064
TGCACAACCGCATTAATATGGAC
59.934
43.478
11.13
0.00
36.86
4.02
2861
3005
7.017645
CGCATTAATATGGACAGCTAATTCAC
58.982
38.462
0.00
0.00
32.15
3.18
2876
3020
7.555639
GCTAATTCACGAGCTAACATACTAG
57.444
40.000
0.00
0.00
35.73
2.57
2884
3028
8.228464
TCACGAGCTAACATACTAGAATATTCG
58.772
37.037
9.78
0.00
0.00
3.34
2921
3065
4.675565
CGCACGAACATGGTTCTACTATAG
59.324
45.833
7.43
0.00
0.00
1.31
2925
3069
8.244802
GCACGAACATGGTTCTACTATAGATAT
58.755
37.037
6.78
0.00
34.22
1.63
Position
MSA Position
Penalty
Sequence
TM
GC
Self any TH
Self end TH
Hairpin
End Stability
68
76
0.526524
GTGATTCACGAGGGCGAGAG
60.527
60.000
0.13
0.00
38.31
3.20
69
77
0.965866
AGTGATTCACGAGGGCGAGA
60.966
55.000
11.01
0.00
39.64
4.04
72
80
1.079819
ACAGTGATTCACGAGGGCG
60.080
57.895
11.01
0.00
39.64
6.13
75
83
2.251040
CGTACACAGTGATTCACGAGG
58.749
52.381
7.81
7.69
39.64
4.63
80
88
3.254903
AGCACTACGTACACAGTGATTCA
59.745
43.478
21.93
0.00
43.99
2.57
100
108
6.668541
TGATTTAGTAGCAGAATGTCAAGC
57.331
37.500
0.00
0.00
39.31
4.01
248
308
1.982938
AGCTAGTTCCGCCCGTCTT
60.983
57.895
0.00
0.00
0.00
3.01
367
448
1.065928
CTGCGTATCCGGACACCTC
59.934
63.158
6.12
0.00
33.68
3.85
368
449
1.255667
AACTGCGTATCCGGACACCT
61.256
55.000
6.12
0.00
33.68
4.00
405
486
2.107204
GGATCTGCACCAGGTAATCCAT
59.893
50.000
13.84
0.00
34.51
3.41
414
495
0.172578
TTCGTACGGATCTGCACCAG
59.827
55.000
16.52
0.00
0.00
4.00
425
506
3.434299
AGCAAAACCATAGTTTCGTACGG
59.566
43.478
16.52
0.00
45.54
4.02
431
512
8.780249
TCTAAGTAACAGCAAAACCATAGTTTC
58.220
33.333
0.00
0.00
45.54
2.78
461
548
1.118033
CAACGGACGGATCGATAACG
58.882
55.000
17.36
17.36
41.26
3.18
476
563
3.722780
GGTGACGTATAACTCGATCAACG
59.277
47.826
0.00
0.00
44.09
4.10
514
601
3.560068
GCAACCGGATAATCACGATTTCT
59.440
43.478
9.46
0.00
32.50
2.52
515
602
3.303791
GGCAACCGGATAATCACGATTTC
60.304
47.826
9.46
0.00
32.50
2.17
547
636
9.219497
CGTTCCGCGGTTTTTAATTTATAATAA
57.781
29.630
27.15
2.01
36.85
1.40
554
643
3.299162
GACGTTCCGCGGTTTTTAATTT
58.701
40.909
27.15
2.24
46.52
1.82
557
646
0.231790
CGACGTTCCGCGGTTTTTAA
59.768
50.000
27.15
8.84
46.52
1.52
559
648
1.824272
CTCGACGTTCCGCGGTTTTT
61.824
55.000
27.15
8.53
46.52
1.94
567
656
2.723209
TGTTATATGCTCGACGTTCCG
58.277
47.619
0.00
0.00
0.00
4.30
585
674
0.701731
TGGGGAATTGTCCGGATTGT
59.298
50.000
7.81
0.00
46.04
2.71
586
675
1.682854
CATGGGGAATTGTCCGGATTG
59.317
52.381
7.81
0.00
46.04
2.67
587
676
2.028996
GCATGGGGAATTGTCCGGATT
61.029
52.381
7.81
0.00
46.04
3.01
588
677
0.468029
GCATGGGGAATTGTCCGGAT
60.468
55.000
7.81
0.00
46.04
4.18
589
678
1.077068
GCATGGGGAATTGTCCGGA
60.077
57.895
0.00
0.00
46.04
5.14
590
679
0.756442
ATGCATGGGGAATTGTCCGG
60.756
55.000
0.00
0.00
46.04
5.14
591
680
1.608590
GTATGCATGGGGAATTGTCCG
59.391
52.381
10.16
0.00
46.04
4.79
592
681
2.665165
TGTATGCATGGGGAATTGTCC
58.335
47.619
10.16
0.00
44.10
4.02
593
682
4.942761
ATTGTATGCATGGGGAATTGTC
57.057
40.909
10.16
0.00
0.00
3.18
600
689
4.209538
TCTTCTGAATTGTATGCATGGGG
58.790
43.478
10.16
0.00
0.00
4.96
622
711
7.594015
CCATAATTTATACAGAGCGTACGTCTT
59.406
37.037
17.90
2.80
31.27
3.01
710
817
5.508153
CGAGATGGGAAATACTACTCCAGTG
60.508
48.000
0.00
0.00
38.24
3.66
734
841
1.740296
CCACGATTGACCCGGTGTC
60.740
63.158
14.17
14.17
44.72
3.67
857
964
3.165071
GGGTGACTGGAATGTGGAAATT
58.835
45.455
0.00
0.00
0.00
1.82
859
966
1.496857
TGGGTGACTGGAATGTGGAAA
59.503
47.619
0.00
0.00
0.00
3.13
860
967
1.073763
CTGGGTGACTGGAATGTGGAA
59.926
52.381
0.00
0.00
0.00
3.53
861
968
0.692476
CTGGGTGACTGGAATGTGGA
59.308
55.000
0.00
0.00
0.00
4.02
862
969
0.962356
GCTGGGTGACTGGAATGTGG
60.962
60.000
0.00
0.00
0.00
4.17
863
970
0.962356
GGCTGGGTGACTGGAATGTG
60.962
60.000
0.00
0.00
0.00
3.21
864
971
1.380302
GGCTGGGTGACTGGAATGT
59.620
57.895
0.00
0.00
0.00
2.71
865
972
1.379044
GGGCTGGGTGACTGGAATG
60.379
63.158
0.00
0.00
0.00
2.67
866
973
2.616458
GGGGCTGGGTGACTGGAAT
61.616
63.158
0.00
0.00
0.00
3.01
909
1023
4.717629
TTGCTCCGGTGTCGCTCG
62.718
66.667
0.00
0.00
34.56
5.03
938
1052
3.444034
GGGGATTAACTTCCAAGCTGAAC
59.556
47.826
0.00
0.00
37.53
3.18
955
1069
4.165372
TCAAGAACGGCTTATAAAGGGGAT
59.835
41.667
0.00
0.00
34.31
3.85
970
1084
0.393077
ACCACTCCCTGTCAAGAACG
59.607
55.000
0.00
0.00
0.00
3.95
1230
1344
1.005512
CACGAACCGGACCATGACA
60.006
57.895
9.46
0.00
0.00
3.58
1561
1675
2.750637
GCTCACCAGCAGCAGCAT
60.751
61.111
3.17
0.00
46.06
3.79
1569
1683
4.008933
ACGACCAGGCTCACCAGC
62.009
66.667
0.00
0.00
46.06
4.85
1570
1684
2.047844
CACGACCAGGCTCACCAG
60.048
66.667
0.00
0.00
39.06
4.00
1573
1687
2.022129
CGAACACGACCAGGCTCAC
61.022
63.158
0.00
0.00
0.00
3.51
1795
1909
3.643320
TGTGATCCTCTAGGCGAAATCAT
59.357
43.478
2.49
0.00
30.84
2.45
1854
1968
1.890979
GCCATGTGATCTGGGCGAG
60.891
63.158
1.97
0.00
36.58
5.03
2186
2305
7.980099
AGAAGTTCCTAGTGTACGGAATTTATG
59.020
37.037
7.62
0.00
38.74
1.90
2204
2323
1.882623
CAGCCTGAACCAAGAAGTTCC
59.117
52.381
0.00
0.00
44.55
3.62
2348
2467
5.679734
ATCAGCGATTCACATGTTTATCC
57.320
39.130
0.00
0.00
0.00
2.59
2364
2483
0.806868
AACATCACAGCCAATCAGCG
59.193
50.000
0.00
0.00
38.01
5.18
2373
2492
5.550232
TGTATGACATCAAACATCACAGC
57.450
39.130
0.00
0.00
0.00
4.40
2374
2493
6.970613
CCAATGTATGACATCAAACATCACAG
59.029
38.462
3.38
0.00
37.97
3.66
2423
2542
3.615496
GCGAGACGAAAGCCTATTTTGTA
59.385
43.478
0.00
0.00
0.00
2.41
2506
2625
3.546815
CGACTGACAAAGAGTTTTGCCTG
60.547
47.826
0.25
0.00
46.05
4.85
2534
2665
2.854736
TGGGGAGATGTGATGAGAGA
57.145
50.000
0.00
0.00
0.00
3.10
2588
2721
4.470462
GAAGGTGCGATCAAATATGATGC
58.530
43.478
0.00
2.05
46.30
3.91
2603
2736
4.133796
GGCGCATTGGGAAGGTGC
62.134
66.667
10.83
0.00
46.86
5.01
2614
2747
0.396139
AATGTGATTGAGGGGCGCAT
60.396
50.000
10.83
0.00
34.52
4.73
2793
2926
4.401202
ACCAAATCCCGCCTTTATAGTTTG
59.599
41.667
0.00
0.00
0.00
2.93
2794
2927
4.606210
ACCAAATCCCGCCTTTATAGTTT
58.394
39.130
0.00
0.00
0.00
2.66
2797
2930
5.591067
TGTTTACCAAATCCCGCCTTTATAG
59.409
40.000
0.00
0.00
0.00
1.31
2799
2932
4.345854
TGTTTACCAAATCCCGCCTTTAT
58.654
39.130
0.00
0.00
0.00
1.40
2800
2933
3.764218
TGTTTACCAAATCCCGCCTTTA
58.236
40.909
0.00
0.00
0.00
1.85
2801
2934
2.599677
TGTTTACCAAATCCCGCCTTT
58.400
42.857
0.00
0.00
0.00
3.11
2804
2937
3.603158
AAATGTTTACCAAATCCCGCC
57.397
42.857
0.00
0.00
0.00
6.13
2806
2939
6.591834
TGCAAATAAATGTTTACCAAATCCCG
59.408
34.615
0.00
0.00
0.00
5.14
2807
2940
7.389053
TGTGCAAATAAATGTTTACCAAATCCC
59.611
33.333
0.00
0.00
0.00
3.85
2808
2941
8.316640
TGTGCAAATAAATGTTTACCAAATCC
57.683
30.769
0.00
0.00
0.00
3.01
2809
2942
9.592720
GTTGTGCAAATAAATGTTTACCAAATC
57.407
29.630
0.00
0.00
0.00
2.17
2838
2982
8.310406
TCGTGAATTAGCTGTCCATATTAATG
57.690
34.615
0.00
0.00
0.00
1.90
Based at the University of Bristol with support from BBSRC .
AutoCloner maintained by Alex Coulton.