Multiple sequence alignment - TraesCS2A01G191200

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS2A01G191200 chr2A 100.000 2116 0 0 1 2116 158074760 158072645 0.000000e+00 3908.0
1 TraesCS2A01G191200 chr2A 86.007 1172 99 31 816 1951 158062475 158061333 0.000000e+00 1195.0
2 TraesCS2A01G191200 chr2A 100.000 315 0 0 2337 2651 158072424 158072110 1.370000e-162 582.0
3 TraesCS2A01G191200 chr2A 75.620 726 115 39 996 1669 25450716 25450001 1.190000e-78 303.0
4 TraesCS2A01G191200 chr2D 96.536 1068 18 7 606 1671 143221170 143222220 0.000000e+00 1749.0
5 TraesCS2A01G191200 chr2D 84.492 1064 108 32 767 1815 143236107 143237128 0.000000e+00 998.0
6 TraesCS2A01G191200 chr2D 89.834 541 33 9 816 1353 143224024 143224545 0.000000e+00 675.0
7 TraesCS2A01G191200 chr2D 95.868 363 13 1 1710 2072 143222233 143222593 1.060000e-163 586.0
8 TraesCS2A01G191200 chr2D 92.593 405 21 6 217 615 143220716 143221117 8.230000e-160 573.0
9 TraesCS2A01G191200 chr2D 81.201 633 75 18 1351 1951 143225486 143226106 1.110000e-128 470.0
10 TraesCS2A01G191200 chr2D 89.130 322 28 2 2337 2651 143222764 143223085 6.880000e-106 394.0
11 TraesCS2A01G191200 chr2D 76.934 711 116 31 996 1669 23317561 23318260 6.980000e-96 361.0
12 TraesCS2A01G191200 chr2D 92.544 228 16 1 1 227 143218129 143218356 2.540000e-85 326.0
13 TraesCS2A01G191200 chr2B 85.090 1167 105 31 816 1951 200896606 200897734 0.000000e+00 1127.0
14 TraesCS2A01G191200 chr2B 86.762 491 51 8 869 1356 201175695 201176174 3.880000e-148 534.0
15 TraesCS2A01G191200 chr2B 89.333 75 8 0 43 117 539337527 539337601 7.810000e-16 95.3
16 TraesCS2A01G191200 chr7B 77.412 425 84 8 1019 1434 654995934 654995513 2.640000e-60 243.0
17 TraesCS2A01G191200 chr7B 88.235 85 10 0 35 119 713284361 713284277 4.670000e-18 102.0
18 TraesCS2A01G191200 chr7D 89.412 85 9 0 35 119 618868832 618868748 1.000000e-19 108.0
19 TraesCS2A01G191200 chr4D 87.356 87 11 0 35 121 179860423 179860337 1.680000e-17 100.0
20 TraesCS2A01G191200 chr4B 86.667 90 12 0 32 121 322745699 322745788 1.680000e-17 100.0
21 TraesCS2A01G191200 chr4B 85.556 90 13 0 32 121 322674031 322674120 7.810000e-16 95.3
22 TraesCS2A01G191200 chr4A 86.667 90 12 0 32 121 342448626 342448715 1.680000e-17 100.0
23 TraesCS2A01G191200 chr3A 89.873 79 7 1 29 106 693161939 693162017 1.680000e-17 100.0
24 TraesCS2A01G191200 chr7A 91.045 67 5 1 2340 2405 144127027 144126961 3.630000e-14 89.8
25 TraesCS2A01G191200 chr7A 89.552 67 6 1 2342 2407 645282686 645282752 1.690000e-12 84.2


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS2A01G191200 chr2A 158072110 158074760 2650 True 2245.000000 3908 100.000000 1 2651 2 chr2A.!!$R3 2650
1 TraesCS2A01G191200 chr2A 158061333 158062475 1142 True 1195.000000 1195 86.007000 816 1951 1 chr2A.!!$R2 1135
2 TraesCS2A01G191200 chr2A 25450001 25450716 715 True 303.000000 303 75.620000 996 1669 1 chr2A.!!$R1 673
3 TraesCS2A01G191200 chr2D 143236107 143237128 1021 False 998.000000 998 84.492000 767 1815 1 chr2D.!!$F2 1048
4 TraesCS2A01G191200 chr2D 143218129 143226106 7977 False 681.857143 1749 91.100857 1 2651 7 chr2D.!!$F3 2650
5 TraesCS2A01G191200 chr2D 23317561 23318260 699 False 361.000000 361 76.934000 996 1669 1 chr2D.!!$F1 673
6 TraesCS2A01G191200 chr2B 200896606 200897734 1128 False 1127.000000 1127 85.090000 816 1951 1 chr2B.!!$F1 1135

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
488 2864 0.34837 ATGGAGGTGGAGGGAGGAAT 59.652 55.0 0.0 0.0 0.0 3.01 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2041 8192 0.110373 CGCGTTGGTTAGGCAAAGTC 60.11 55.0 0.0 0.0 37.49 3.01 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
57 58 7.699878 AGTCCCTCTAATCCAAAATAAGTGTT 58.300 34.615 0.00 0.00 0.00 3.32
60 61 7.393234 TCCCTCTAATCCAAAATAAGTGTTGTG 59.607 37.037 0.00 0.00 0.00 3.33
110 111 5.846203 CAAGACACTTGTTTTGGATTGGAT 58.154 37.500 5.01 0.00 36.74 3.41
114 115 4.653341 ACACTTGTTTTGGATTGGATGGAA 59.347 37.500 0.00 0.00 0.00 3.53
167 169 3.684908 TCAGGTGTCCAATGTAATGTGG 58.315 45.455 0.00 0.00 36.13 4.17
263 2635 6.388259 TTTGTTTCTTTGCGTTTCTTTCAG 57.612 33.333 0.00 0.00 0.00 3.02
425 2799 5.777802 AGTGATTGTAAGGCGAGATGATAG 58.222 41.667 0.00 0.00 0.00 2.08
426 2800 5.536538 AGTGATTGTAAGGCGAGATGATAGA 59.463 40.000 0.00 0.00 0.00 1.98
427 2801 6.210385 AGTGATTGTAAGGCGAGATGATAGAT 59.790 38.462 0.00 0.00 0.00 1.98
431 2805 8.682936 ATTGTAAGGCGAGATGATAGATTTTT 57.317 30.769 0.00 0.00 0.00 1.94
436 2810 7.020914 AGGCGAGATGATAGATTTTTGAAAC 57.979 36.000 0.00 0.00 0.00 2.78
488 2864 0.348370 ATGGAGGTGGAGGGAGGAAT 59.652 55.000 0.00 0.00 0.00 3.01
489 2865 0.621571 TGGAGGTGGAGGGAGGAATG 60.622 60.000 0.00 0.00 0.00 2.67
504 2880 5.893824 GGGAGGAATGTGGAGAAAAATGTAT 59.106 40.000 0.00 0.00 0.00 2.29
505 2881 7.060421 GGGAGGAATGTGGAGAAAAATGTATA 58.940 38.462 0.00 0.00 0.00 1.47
506 2882 7.725844 GGGAGGAATGTGGAGAAAAATGTATAT 59.274 37.037 0.00 0.00 0.00 0.86
545 2921 3.288964 GAGAGGGATTAAGGAGACACGA 58.711 50.000 0.00 0.00 0.00 4.35
547 2923 1.749634 AGGGATTAAGGAGACACGACG 59.250 52.381 0.00 0.00 0.00 5.12
553 2929 0.526662 AAGGAGACACGACGATCACC 59.473 55.000 0.00 7.03 0.00 4.02
557 2934 3.695022 GACACGACGATCACCGGGG 62.695 68.421 6.32 0.00 43.93 5.73
563 2940 1.610554 GACGATCACCGGGGAGGAAA 61.611 60.000 14.24 0.00 45.00 3.13
582 2959 5.189539 AGGAAAAAGAGAGGGAGAGAATCAG 59.810 44.000 0.00 0.00 37.82 2.90
627 3066 8.564574 TGAAAACAACATGGATCAGTTAGTAAC 58.435 33.333 4.78 4.78 0.00 2.50
649 3088 4.580580 ACTTGAAAGGCTAACAGTTCTTGG 59.419 41.667 0.00 0.00 0.00 3.61
652 3091 4.821805 TGAAAGGCTAACAGTTCTTGGAAG 59.178 41.667 0.00 0.00 0.00 3.46
736 3175 5.659440 AAACTTGGCCATTATCAATTCGT 57.341 34.783 6.09 0.00 0.00 3.85
806 3246 0.967887 CTGGAGGAGAGAAGCCGACA 60.968 60.000 0.00 0.00 0.00 4.35
857 3297 6.641314 TCGTTCCGCTAGATAAGAAATCAATC 59.359 38.462 0.00 0.00 0.00 2.67
858 3298 6.420903 CGTTCCGCTAGATAAGAAATCAATCA 59.579 38.462 0.00 0.00 0.00 2.57
859 3299 7.042725 CGTTCCGCTAGATAAGAAATCAATCAA 60.043 37.037 0.00 0.00 0.00 2.57
860 3300 8.778358 GTTCCGCTAGATAAGAAATCAATCAAT 58.222 33.333 0.00 0.00 0.00 2.57
919 3359 2.371306 TCACATTCCACATGCATCCTG 58.629 47.619 0.00 0.00 0.00 3.86
944 3390 1.839191 TGGATCACCAGCCATAGCC 59.161 57.895 0.00 0.00 41.77 3.93
945 3391 0.987613 TGGATCACCAGCCATAGCCA 60.988 55.000 0.00 0.00 41.77 4.75
946 3392 0.403271 GGATCACCAGCCATAGCCAT 59.597 55.000 0.00 0.00 41.25 4.40
947 3393 1.630369 GGATCACCAGCCATAGCCATA 59.370 52.381 0.00 0.00 41.25 2.74
948 3394 2.355513 GGATCACCAGCCATAGCCATAG 60.356 54.545 0.00 0.00 41.25 2.23
962 3408 7.571919 CCATAGCCATAGGAATCATCATACTT 58.428 38.462 0.00 0.00 0.00 2.24
1377 3871 1.884579 TCACTCTTCGTAAACGCTCCT 59.115 47.619 0.00 0.00 39.60 3.69
1573 4099 6.741992 TCTCGTCTTGCATTATGAACAATT 57.258 33.333 0.00 0.00 0.00 2.32
1576 4102 6.676950 TCGTCTTGCATTATGAACAATTTGT 58.323 32.000 0.00 0.00 0.00 2.83
1660 7779 2.608016 GCTGCTTCTTAACTGGGCAAAC 60.608 50.000 0.00 0.00 32.43 2.93
1692 7817 5.866335 ACTCGTTTGTTCCGCATAAATTA 57.134 34.783 0.00 0.00 0.00 1.40
1696 7821 6.670233 TCGTTTGTTCCGCATAAATTAAACT 58.330 32.000 0.00 0.00 0.00 2.66
1697 7822 6.579292 TCGTTTGTTCCGCATAAATTAAACTG 59.421 34.615 0.00 0.00 0.00 3.16
1701 7826 8.649973 TTGTTCCGCATAAATTAAACTGTTTT 57.350 26.923 11.48 0.00 0.00 2.43
1703 7828 7.921214 TGTTCCGCATAAATTAAACTGTTTTCA 59.079 29.630 11.48 0.00 0.00 2.69
1741 7866 4.960469 AGAATCTTTCATGGGTGCATGAAT 59.040 37.500 0.45 0.00 46.84 2.57
1750 7875 3.266636 TGGGTGCATGAATTAGTACGTG 58.733 45.455 0.00 0.00 0.00 4.49
1751 7876 2.031683 GGGTGCATGAATTAGTACGTGC 59.968 50.000 0.00 0.00 45.59 5.34
1820 7948 4.051922 GAGGCATGGTCGTAGTAGAATTG 58.948 47.826 0.00 0.00 0.00 2.32
1825 7953 4.371855 TGGTCGTAGTAGAATTGCAGAG 57.628 45.455 0.00 0.00 0.00 3.35
1826 7954 3.130516 TGGTCGTAGTAGAATTGCAGAGG 59.869 47.826 0.00 0.00 0.00 3.69
1844 7995 1.084370 GGCAAGGTCAAGATCCGTCG 61.084 60.000 0.00 0.00 0.00 5.12
1853 8004 3.067180 GTCAAGATCCGTCGGTACCATTA 59.933 47.826 13.54 0.00 0.00 1.90
1863 8014 5.862323 CCGTCGGTACCATTATTAGAAGATG 59.138 44.000 13.54 2.29 0.00 2.90
1864 8015 6.294342 CCGTCGGTACCATTATTAGAAGATGA 60.294 42.308 13.54 0.00 0.00 2.92
1865 8016 6.802348 CGTCGGTACCATTATTAGAAGATGAG 59.198 42.308 13.54 0.00 0.00 2.90
1893 8044 4.748102 AGTGCGAGTTTTCAGTTCGATTAA 59.252 37.500 0.00 0.00 36.49 1.40
1894 8045 5.235616 AGTGCGAGTTTTCAGTTCGATTAAA 59.764 36.000 0.00 0.00 36.49 1.52
1895 8046 5.560378 GTGCGAGTTTTCAGTTCGATTAAAG 59.440 40.000 0.00 0.00 36.49 1.85
1920 8071 9.331282 AGAGAATATGTAGCTTTATTTGTGTCC 57.669 33.333 0.00 0.00 0.00 4.02
1922 8073 8.893727 AGAATATGTAGCTTTATTTGTGTCCAC 58.106 33.333 0.00 0.00 0.00 4.02
1944 8095 3.194542 CCTCTGAGTCGTCTTGGAGAAAT 59.805 47.826 3.66 0.00 0.00 2.17
1951 8102 8.391075 TGAGTCGTCTTGGAGAAATTTTATTT 57.609 30.769 0.00 0.00 0.00 1.40
1952 8103 9.496873 TGAGTCGTCTTGGAGAAATTTTATTTA 57.503 29.630 0.00 0.00 0.00 1.40
1957 8108 9.855021 CGTCTTGGAGAAATTTTATTTATTGGT 57.145 29.630 0.00 0.00 0.00 3.67
1973 8124 7.825331 TTTATTGGTTATTTGTGAGTGTCCA 57.175 32.000 0.00 0.00 0.00 4.02
1974 8125 5.705609 ATTGGTTATTTGTGAGTGTCCAC 57.294 39.130 0.00 0.00 37.55 4.02
1975 8126 3.482436 TGGTTATTTGTGAGTGTCCACC 58.518 45.455 0.00 0.00 36.26 4.61
1976 8127 2.817844 GGTTATTTGTGAGTGTCCACCC 59.182 50.000 0.00 0.00 36.26 4.61
1977 8128 3.497942 GGTTATTTGTGAGTGTCCACCCT 60.498 47.826 0.00 0.00 36.26 4.34
1978 8129 4.263156 GGTTATTTGTGAGTGTCCACCCTA 60.263 45.833 0.00 0.00 36.26 3.53
1979 8130 5.497474 GTTATTTGTGAGTGTCCACCCTAT 58.503 41.667 0.00 0.00 36.26 2.57
1980 8131 3.417069 TTTGTGAGTGTCCACCCTATG 57.583 47.619 0.00 0.00 36.26 2.23
1995 8146 6.080648 CACCCTATGGAATCATCAAATGTG 57.919 41.667 0.00 0.00 34.96 3.21
1996 8147 4.586001 ACCCTATGGAATCATCAAATGTGC 59.414 41.667 0.00 0.00 34.96 4.57
1997 8148 4.585581 CCCTATGGAATCATCAAATGTGCA 59.414 41.667 0.00 0.00 34.96 4.57
1998 8149 5.508489 CCCTATGGAATCATCAAATGTGCAC 60.508 44.000 10.75 10.75 34.96 4.57
1999 8150 3.872511 TGGAATCATCAAATGTGCACC 57.127 42.857 15.69 0.00 0.00 5.01
2000 8151 2.164017 TGGAATCATCAAATGTGCACCG 59.836 45.455 15.69 0.00 0.00 4.94
2001 8152 2.423185 GGAATCATCAAATGTGCACCGA 59.577 45.455 15.69 6.10 0.00 4.69
2002 8153 3.488047 GGAATCATCAAATGTGCACCGAG 60.488 47.826 15.69 1.68 0.00 4.63
2003 8154 2.183478 TCATCAAATGTGCACCGAGT 57.817 45.000 15.69 0.00 0.00 4.18
2004 8155 2.503331 TCATCAAATGTGCACCGAGTT 58.497 42.857 15.69 0.00 0.00 3.01
2005 8156 2.226200 TCATCAAATGTGCACCGAGTTG 59.774 45.455 15.69 12.44 0.00 3.16
2006 8157 0.310543 TCAAATGTGCACCGAGTTGC 59.689 50.000 15.69 0.00 43.31 4.17
2007 8158 0.664166 CAAATGTGCACCGAGTTGCC 60.664 55.000 15.69 0.00 42.25 4.52
2008 8159 2.128853 AAATGTGCACCGAGTTGCCG 62.129 55.000 15.69 0.00 42.25 5.69
2009 8160 3.529341 ATGTGCACCGAGTTGCCGA 62.529 57.895 15.69 0.00 42.25 5.54
2010 8161 2.970324 GTGCACCGAGTTGCCGAA 60.970 61.111 5.22 0.00 42.25 4.30
2011 8162 2.203084 TGCACCGAGTTGCCGAAA 60.203 55.556 1.82 0.00 42.25 3.46
2012 8163 1.599518 TGCACCGAGTTGCCGAAAT 60.600 52.632 1.82 0.00 42.25 2.17
2013 8164 1.154225 GCACCGAGTTGCCGAAATG 60.154 57.895 0.00 0.00 36.42 2.32
2014 8165 1.852067 GCACCGAGTTGCCGAAATGT 61.852 55.000 0.00 0.00 36.42 2.71
2015 8166 0.591170 CACCGAGTTGCCGAAATGTT 59.409 50.000 0.00 0.00 0.00 2.71
2016 8167 1.001815 CACCGAGTTGCCGAAATGTTT 60.002 47.619 0.00 0.00 0.00 2.83
2017 8168 1.679153 ACCGAGTTGCCGAAATGTTTT 59.321 42.857 0.00 0.00 0.00 2.43
2018 8169 2.879646 ACCGAGTTGCCGAAATGTTTTA 59.120 40.909 0.00 0.00 0.00 1.52
2019 8170 3.504520 ACCGAGTTGCCGAAATGTTTTAT 59.495 39.130 0.00 0.00 0.00 1.40
2020 8171 4.095610 CCGAGTTGCCGAAATGTTTTATC 58.904 43.478 0.00 0.00 0.00 1.75
2021 8172 4.095610 CGAGTTGCCGAAATGTTTTATCC 58.904 43.478 0.00 0.00 0.00 2.59
2022 8173 4.421058 GAGTTGCCGAAATGTTTTATCCC 58.579 43.478 0.00 0.00 0.00 3.85
2023 8174 4.086457 AGTTGCCGAAATGTTTTATCCCT 58.914 39.130 0.00 0.00 0.00 4.20
2024 8175 4.526650 AGTTGCCGAAATGTTTTATCCCTT 59.473 37.500 0.00 0.00 0.00 3.95
2025 8176 4.448537 TGCCGAAATGTTTTATCCCTTG 57.551 40.909 0.00 0.00 0.00 3.61
2026 8177 3.194542 TGCCGAAATGTTTTATCCCTTGG 59.805 43.478 0.00 0.00 0.00 3.61
2027 8178 3.445805 GCCGAAATGTTTTATCCCTTGGA 59.554 43.478 0.00 0.00 35.55 3.53
2028 8179 4.676986 GCCGAAATGTTTTATCCCTTGGAC 60.677 45.833 0.00 0.00 32.98 4.02
2029 8180 4.438200 CCGAAATGTTTTATCCCTTGGACG 60.438 45.833 0.00 0.00 32.98 4.79
2030 8181 4.155280 CGAAATGTTTTATCCCTTGGACGT 59.845 41.667 0.00 0.00 32.98 4.34
2031 8182 5.352016 CGAAATGTTTTATCCCTTGGACGTA 59.648 40.000 0.00 0.00 32.98 3.57
2032 8183 6.128227 CGAAATGTTTTATCCCTTGGACGTAA 60.128 38.462 0.00 0.00 32.98 3.18
2033 8184 7.414762 CGAAATGTTTTATCCCTTGGACGTAAT 60.415 37.037 0.00 0.00 32.98 1.89
2034 8185 6.693315 ATGTTTTATCCCTTGGACGTAATG 57.307 37.500 0.00 0.00 32.98 1.90
2035 8186 5.806818 TGTTTTATCCCTTGGACGTAATGA 58.193 37.500 0.00 0.00 32.98 2.57
2036 8187 5.644636 TGTTTTATCCCTTGGACGTAATGAC 59.355 40.000 0.00 0.00 32.98 3.06
2049 8200 4.178156 CGTAATGACGTATGACTTTGCC 57.822 45.455 0.00 0.00 44.31 4.52
2050 8201 3.863424 CGTAATGACGTATGACTTTGCCT 59.137 43.478 0.00 0.00 44.31 4.75
2051 8202 5.038683 CGTAATGACGTATGACTTTGCCTA 58.961 41.667 0.00 0.00 44.31 3.93
2052 8203 5.517411 CGTAATGACGTATGACTTTGCCTAA 59.483 40.000 0.00 0.00 44.31 2.69
2053 8204 5.796350 AATGACGTATGACTTTGCCTAAC 57.204 39.130 0.00 0.00 0.00 2.34
2054 8205 3.592059 TGACGTATGACTTTGCCTAACC 58.408 45.455 0.00 0.00 0.00 2.85
2055 8206 3.007074 TGACGTATGACTTTGCCTAACCA 59.993 43.478 0.00 0.00 0.00 3.67
2056 8207 3.998341 GACGTATGACTTTGCCTAACCAA 59.002 43.478 0.00 0.00 0.00 3.67
2057 8208 3.749609 ACGTATGACTTTGCCTAACCAAC 59.250 43.478 0.00 0.00 0.00 3.77
2058 8209 3.181524 CGTATGACTTTGCCTAACCAACG 60.182 47.826 0.00 0.00 0.00 4.10
2059 8210 0.948678 TGACTTTGCCTAACCAACGC 59.051 50.000 0.00 0.00 0.00 4.84
2060 8211 0.110373 GACTTTGCCTAACCAACGCG 60.110 55.000 3.53 3.53 0.00 6.01
2061 8212 1.442017 CTTTGCCTAACCAACGCGC 60.442 57.895 5.73 0.00 0.00 6.86
2062 8213 2.123988 CTTTGCCTAACCAACGCGCA 62.124 55.000 5.73 0.00 0.00 6.09
2063 8214 2.395367 TTTGCCTAACCAACGCGCAC 62.395 55.000 5.73 0.00 0.00 5.34
2064 8215 3.047877 GCCTAACCAACGCGCACT 61.048 61.111 5.73 0.00 0.00 4.40
2065 8216 1.738830 GCCTAACCAACGCGCACTA 60.739 57.895 5.73 0.00 0.00 2.74
2066 8217 1.963190 GCCTAACCAACGCGCACTAC 61.963 60.000 5.73 0.00 0.00 2.73
2067 8218 0.389426 CCTAACCAACGCGCACTACT 60.389 55.000 5.73 0.00 0.00 2.57
2068 8219 1.425412 CTAACCAACGCGCACTACTT 58.575 50.000 5.73 0.00 0.00 2.24
2069 8220 1.796459 CTAACCAACGCGCACTACTTT 59.204 47.619 5.73 0.00 0.00 2.66
2070 8221 1.018910 AACCAACGCGCACTACTTTT 58.981 45.000 5.73 0.00 0.00 2.27
2071 8222 1.018910 ACCAACGCGCACTACTTTTT 58.981 45.000 5.73 0.00 0.00 1.94
2092 8243 7.615582 TTTTTCAATCTAGCAATGATCGTCT 57.384 32.000 0.00 0.00 0.00 4.18
2093 8244 6.834959 TTTCAATCTAGCAATGATCGTCTC 57.165 37.500 0.00 0.00 0.00 3.36
2094 8245 4.876125 TCAATCTAGCAATGATCGTCTCC 58.124 43.478 0.00 0.00 0.00 3.71
2095 8246 4.342092 TCAATCTAGCAATGATCGTCTCCA 59.658 41.667 0.00 0.00 0.00 3.86
2096 8247 4.944619 ATCTAGCAATGATCGTCTCCAA 57.055 40.909 0.00 0.00 0.00 3.53
2097 8248 4.736126 TCTAGCAATGATCGTCTCCAAA 57.264 40.909 0.00 0.00 0.00 3.28
2098 8249 5.084818 TCTAGCAATGATCGTCTCCAAAA 57.915 39.130 0.00 0.00 0.00 2.44
2099 8250 5.487433 TCTAGCAATGATCGTCTCCAAAAA 58.513 37.500 0.00 0.00 0.00 1.94
2100 8251 6.115446 TCTAGCAATGATCGTCTCCAAAAAT 58.885 36.000 0.00 0.00 0.00 1.82
2101 8252 7.272244 TCTAGCAATGATCGTCTCCAAAAATA 58.728 34.615 0.00 0.00 0.00 1.40
2102 8253 6.757897 AGCAATGATCGTCTCCAAAAATAA 57.242 33.333 0.00 0.00 0.00 1.40
2103 8254 7.338800 AGCAATGATCGTCTCCAAAAATAAT 57.661 32.000 0.00 0.00 0.00 1.28
2104 8255 7.775120 AGCAATGATCGTCTCCAAAAATAATT 58.225 30.769 0.00 0.00 0.00 1.40
2105 8256 8.902806 AGCAATGATCGTCTCCAAAAATAATTA 58.097 29.630 0.00 0.00 0.00 1.40
2106 8257 9.683069 GCAATGATCGTCTCCAAAAATAATTAT 57.317 29.630 0.00 0.00 0.00 1.28
2108 8259 9.683069 AATGATCGTCTCCAAAAATAATTATGC 57.317 29.630 0.00 0.00 0.00 3.14
2109 8260 7.648142 TGATCGTCTCCAAAAATAATTATGCC 58.352 34.615 0.00 0.00 0.00 4.40
2110 8261 7.284261 TGATCGTCTCCAAAAATAATTATGCCA 59.716 33.333 0.00 0.00 0.00 4.92
2111 8262 7.397892 TCGTCTCCAAAAATAATTATGCCAA 57.602 32.000 0.00 0.00 0.00 4.52
2112 8263 7.831753 TCGTCTCCAAAAATAATTATGCCAAA 58.168 30.769 0.00 0.00 0.00 3.28
2113 8264 8.474025 TCGTCTCCAAAAATAATTATGCCAAAT 58.526 29.630 0.00 0.00 0.00 2.32
2114 8265 9.097257 CGTCTCCAAAAATAATTATGCCAAATT 57.903 29.630 0.00 0.00 33.69 1.82
2362 8513 9.716531 CAAATGTATTATATTCTCTGCCTCTCA 57.283 33.333 0.00 0.00 0.00 3.27
2364 8515 9.887629 AATGTATTATATTCTCTGCCTCTCATG 57.112 33.333 0.00 0.00 0.00 3.07
2365 8516 8.427902 TGTATTATATTCTCTGCCTCTCATGT 57.572 34.615 0.00 0.00 0.00 3.21
2366 8517 8.309656 TGTATTATATTCTCTGCCTCTCATGTG 58.690 37.037 0.00 0.00 0.00 3.21
2367 8518 6.983906 TTATATTCTCTGCCTCTCATGTGA 57.016 37.500 0.00 0.00 0.00 3.58
2368 8519 5.883685 ATATTCTCTGCCTCTCATGTGAA 57.116 39.130 0.00 0.00 0.00 3.18
2369 8520 4.774660 ATTCTCTGCCTCTCATGTGAAT 57.225 40.909 0.00 0.00 0.00 2.57
2370 8521 5.883685 ATTCTCTGCCTCTCATGTGAATA 57.116 39.130 0.00 0.00 0.00 1.75
2371 8522 4.933505 TCTCTGCCTCTCATGTGAATAG 57.066 45.455 0.00 0.00 0.00 1.73
2372 8523 4.540715 TCTCTGCCTCTCATGTGAATAGA 58.459 43.478 0.00 2.90 0.00 1.98
2373 8524 4.583907 TCTCTGCCTCTCATGTGAATAGAG 59.416 45.833 17.72 17.72 37.17 2.43
2378 8529 3.312890 CTCTCATGTGAATAGAGGGGGT 58.687 50.000 0.00 0.00 34.40 4.95
2379 8530 4.483950 CTCTCATGTGAATAGAGGGGGTA 58.516 47.826 0.00 0.00 34.40 3.69
2380 8531 4.890988 TCTCATGTGAATAGAGGGGGTAA 58.109 43.478 0.00 0.00 0.00 2.85
2381 8532 4.901849 TCTCATGTGAATAGAGGGGGTAAG 59.098 45.833 0.00 0.00 0.00 2.34
2382 8533 4.890988 TCATGTGAATAGAGGGGGTAAGA 58.109 43.478 0.00 0.00 0.00 2.10
2383 8534 4.901849 TCATGTGAATAGAGGGGGTAAGAG 59.098 45.833 0.00 0.00 0.00 2.85
2384 8535 3.654273 TGTGAATAGAGGGGGTAAGAGG 58.346 50.000 0.00 0.00 0.00 3.69
2385 8536 2.973406 GTGAATAGAGGGGGTAAGAGGG 59.027 54.545 0.00 0.00 0.00 4.30
2386 8537 2.869689 TGAATAGAGGGGGTAAGAGGGA 59.130 50.000 0.00 0.00 0.00 4.20
2387 8538 3.116707 TGAATAGAGGGGGTAAGAGGGAG 60.117 52.174 0.00 0.00 0.00 4.30
2388 8539 0.561680 TAGAGGGGGTAAGAGGGAGC 59.438 60.000 0.00 0.00 0.00 4.70
2389 8540 1.003051 GAGGGGGTAAGAGGGAGCA 59.997 63.158 0.00 0.00 0.00 4.26
2390 8541 0.400670 GAGGGGGTAAGAGGGAGCAT 60.401 60.000 0.00 0.00 0.00 3.79
2391 8542 0.695803 AGGGGGTAAGAGGGAGCATG 60.696 60.000 0.00 0.00 0.00 4.06
2392 8543 0.988678 GGGGGTAAGAGGGAGCATGT 60.989 60.000 0.00 0.00 0.00 3.21
2393 8544 0.919710 GGGGTAAGAGGGAGCATGTT 59.080 55.000 0.00 0.00 0.00 2.71
2394 8545 2.124411 GGGGTAAGAGGGAGCATGTTA 58.876 52.381 0.00 0.00 0.00 2.41
2395 8546 2.508300 GGGGTAAGAGGGAGCATGTTAA 59.492 50.000 0.00 0.00 0.00 2.01
2396 8547 3.433740 GGGGTAAGAGGGAGCATGTTAAG 60.434 52.174 0.00 0.00 0.00 1.85
2397 8548 3.454812 GGGTAAGAGGGAGCATGTTAAGA 59.545 47.826 0.00 0.00 0.00 2.10
2398 8549 4.443621 GGTAAGAGGGAGCATGTTAAGAC 58.556 47.826 0.00 0.00 0.00 3.01
2399 8550 4.162509 GGTAAGAGGGAGCATGTTAAGACT 59.837 45.833 0.00 0.00 0.00 3.24
2400 8551 3.902881 AGAGGGAGCATGTTAAGACTG 57.097 47.619 0.00 0.00 0.00 3.51
2401 8552 2.093235 AGAGGGAGCATGTTAAGACTGC 60.093 50.000 0.00 0.00 36.15 4.40
2407 8558 4.277515 AGCATGTTAAGACTGCTCAAGA 57.722 40.909 0.00 0.00 42.35 3.02
2408 8559 4.645535 AGCATGTTAAGACTGCTCAAGAA 58.354 39.130 0.00 0.00 42.35 2.52
2409 8560 5.251764 AGCATGTTAAGACTGCTCAAGAAT 58.748 37.500 0.00 0.00 42.35 2.40
2410 8561 5.709164 AGCATGTTAAGACTGCTCAAGAATT 59.291 36.000 0.00 0.00 42.35 2.17
2411 8562 6.881065 AGCATGTTAAGACTGCTCAAGAATTA 59.119 34.615 0.00 0.00 42.35 1.40
2412 8563 7.555554 AGCATGTTAAGACTGCTCAAGAATTAT 59.444 33.333 0.00 0.00 42.35 1.28
2413 8564 8.186821 GCATGTTAAGACTGCTCAAGAATTATT 58.813 33.333 0.00 0.00 33.15 1.40
2419 8570 8.517062 AAGACTGCTCAAGAATTATTATTGCT 57.483 30.769 7.36 0.00 0.00 3.91
2420 8571 7.928103 AGACTGCTCAAGAATTATTATTGCTG 58.072 34.615 7.36 4.31 0.00 4.41
2421 8572 6.501781 ACTGCTCAAGAATTATTATTGCTGC 58.498 36.000 16.56 16.56 0.00 5.25
2422 8573 6.095860 ACTGCTCAAGAATTATTATTGCTGCA 59.904 34.615 21.10 21.10 34.51 4.41
2423 8574 6.865411 TGCTCAAGAATTATTATTGCTGCAA 58.135 32.000 18.43 18.43 33.57 4.08
2424 8575 7.321908 TGCTCAAGAATTATTATTGCTGCAAA 58.678 30.769 20.06 3.96 33.57 3.68
2425 8576 7.982919 TGCTCAAGAATTATTATTGCTGCAAAT 59.017 29.630 20.06 11.70 33.57 2.32
2426 8577 8.823818 GCTCAAGAATTATTATTGCTGCAAATT 58.176 29.630 20.06 13.51 0.00 1.82
2428 8579 9.656040 TCAAGAATTATTATTGCTGCAAATTGT 57.344 25.926 20.06 9.57 0.00 2.71
2434 8585 6.966435 ATTATTGCTGCAAATTGTACAACC 57.034 33.333 20.06 0.64 0.00 3.77
2435 8586 4.605640 ATTGCTGCAAATTGTACAACCT 57.394 36.364 20.06 0.00 0.00 3.50
2436 8587 4.399004 TTGCTGCAAATTGTACAACCTT 57.601 36.364 13.51 4.69 0.00 3.50
2437 8588 5.521906 TTGCTGCAAATTGTACAACCTTA 57.478 34.783 13.51 0.00 0.00 2.69
2438 8589 5.521906 TGCTGCAAATTGTACAACCTTAA 57.478 34.783 11.22 0.00 0.00 1.85
2439 8590 5.907207 TGCTGCAAATTGTACAACCTTAAA 58.093 33.333 11.22 0.00 0.00 1.52
2440 8591 5.751028 TGCTGCAAATTGTACAACCTTAAAC 59.249 36.000 11.22 0.00 0.00 2.01
2441 8592 5.176774 GCTGCAAATTGTACAACCTTAAACC 59.823 40.000 11.22 0.00 0.00 3.27
2442 8593 6.222038 TGCAAATTGTACAACCTTAAACCA 57.778 33.333 11.22 0.00 0.00 3.67
2443 8594 6.821388 TGCAAATTGTACAACCTTAAACCAT 58.179 32.000 11.22 0.00 0.00 3.55
2444 8595 7.275920 TGCAAATTGTACAACCTTAAACCATT 58.724 30.769 11.22 0.00 0.00 3.16
2445 8596 7.225538 TGCAAATTGTACAACCTTAAACCATTG 59.774 33.333 11.22 5.17 0.00 2.82
2446 8597 7.571892 CAAATTGTACAACCTTAAACCATTGC 58.428 34.615 11.22 0.00 0.00 3.56
2447 8598 6.664428 ATTGTACAACCTTAAACCATTGCT 57.336 33.333 11.22 0.00 0.00 3.91
2448 8599 6.472686 TTGTACAACCTTAAACCATTGCTT 57.527 33.333 3.59 0.00 0.00 3.91
2449 8600 7.584122 TTGTACAACCTTAAACCATTGCTTA 57.416 32.000 3.59 0.00 0.00 3.09
2450 8601 7.584122 TGTACAACCTTAAACCATTGCTTAA 57.416 32.000 0.00 0.00 0.00 1.85
2451 8602 8.184304 TGTACAACCTTAAACCATTGCTTAAT 57.816 30.769 0.00 0.00 0.00 1.40
2452 8603 8.085296 TGTACAACCTTAAACCATTGCTTAATG 58.915 33.333 0.00 0.00 0.00 1.90
2453 8604 5.931724 ACAACCTTAAACCATTGCTTAATGC 59.068 36.000 0.00 0.00 43.25 3.56
2454 8605 5.084818 ACCTTAAACCATTGCTTAATGCC 57.915 39.130 0.00 0.00 42.00 4.40
2455 8606 4.081142 ACCTTAAACCATTGCTTAATGCCC 60.081 41.667 0.00 0.00 42.00 5.36
2456 8607 4.441792 CTTAAACCATTGCTTAATGCCCC 58.558 43.478 0.00 0.00 42.00 5.80
2457 8608 1.949799 AACCATTGCTTAATGCCCCA 58.050 45.000 0.00 0.00 42.00 4.96
2458 8609 1.949799 ACCATTGCTTAATGCCCCAA 58.050 45.000 0.00 0.00 42.00 4.12
2459 8610 2.480390 ACCATTGCTTAATGCCCCAAT 58.520 42.857 0.00 0.00 42.00 3.16
2460 8611 2.171027 ACCATTGCTTAATGCCCCAATG 59.829 45.455 0.00 0.00 42.41 2.82
2461 8612 2.171027 CCATTGCTTAATGCCCCAATGT 59.829 45.455 10.23 0.00 41.64 2.71
2462 8613 3.387374 CCATTGCTTAATGCCCCAATGTA 59.613 43.478 10.23 0.00 41.64 2.29
2463 8614 4.141756 CCATTGCTTAATGCCCCAATGTAA 60.142 41.667 10.23 0.00 41.64 2.41
2464 8615 4.734398 TTGCTTAATGCCCCAATGTAAG 57.266 40.909 0.00 0.00 42.00 2.34
2465 8616 3.974719 TGCTTAATGCCCCAATGTAAGA 58.025 40.909 0.00 0.00 42.00 2.10
2466 8617 3.953612 TGCTTAATGCCCCAATGTAAGAG 59.046 43.478 0.00 0.00 42.00 2.85
2467 8618 3.243535 GCTTAATGCCCCAATGTAAGAGC 60.244 47.826 0.00 0.00 35.15 4.09
2468 8619 2.530460 AATGCCCCAATGTAAGAGCA 57.470 45.000 0.00 0.00 34.28 4.26
2469 8620 1.767759 ATGCCCCAATGTAAGAGCAC 58.232 50.000 0.00 0.00 32.26 4.40
2470 8621 0.403655 TGCCCCAATGTAAGAGCACA 59.596 50.000 0.00 0.00 0.00 4.57
2471 8622 0.811281 GCCCCAATGTAAGAGCACAC 59.189 55.000 0.00 0.00 0.00 3.82
2472 8623 1.463674 CCCCAATGTAAGAGCACACC 58.536 55.000 0.00 0.00 0.00 4.16
2473 8624 1.271871 CCCCAATGTAAGAGCACACCA 60.272 52.381 0.00 0.00 0.00 4.17
2474 8625 2.621407 CCCCAATGTAAGAGCACACCAT 60.621 50.000 0.00 0.00 0.00 3.55
2475 8626 2.424601 CCCAATGTAAGAGCACACCATG 59.575 50.000 0.00 0.00 0.00 3.66
2483 8634 3.127533 GCACACCATGCGGAGGTC 61.128 66.667 0.00 0.00 46.55 3.85
2484 8635 2.815211 CACACCATGCGGAGGTCG 60.815 66.667 0.00 0.00 37.23 4.79
2485 8636 3.311110 ACACCATGCGGAGGTCGT 61.311 61.111 0.00 0.00 41.72 4.34
2486 8637 2.509336 CACCATGCGGAGGTCGTC 60.509 66.667 0.00 0.00 41.72 4.20
2487 8638 4.129737 ACCATGCGGAGGTCGTCG 62.130 66.667 0.00 0.00 41.72 5.12
2488 8639 4.873129 CCATGCGGAGGTCGTCGG 62.873 72.222 0.00 0.00 41.72 4.79
2489 8640 4.873129 CATGCGGAGGTCGTCGGG 62.873 72.222 0.00 0.00 41.72 5.14
2508 8659 2.871453 GGGACCTGATCTCTACCTCTC 58.129 57.143 0.00 0.00 0.00 3.20
2509 8660 2.175931 GGGACCTGATCTCTACCTCTCA 59.824 54.545 0.00 0.00 0.00 3.27
2510 8661 3.219281 GGACCTGATCTCTACCTCTCAC 58.781 54.545 0.00 0.00 0.00 3.51
2511 8662 2.875933 GACCTGATCTCTACCTCTCACG 59.124 54.545 0.00 0.00 0.00 4.35
2512 8663 2.240160 ACCTGATCTCTACCTCTCACGT 59.760 50.000 0.00 0.00 0.00 4.49
2513 8664 2.616376 CCTGATCTCTACCTCTCACGTG 59.384 54.545 9.94 9.94 0.00 4.49
2514 8665 3.275143 CTGATCTCTACCTCTCACGTGT 58.725 50.000 16.51 0.00 0.00 4.49
2515 8666 3.010420 TGATCTCTACCTCTCACGTGTG 58.990 50.000 16.51 13.78 0.00 3.82
2516 8667 2.853235 TCTCTACCTCTCACGTGTGA 57.147 50.000 18.43 18.43 38.06 3.58
2517 8668 3.351794 TCTCTACCTCTCACGTGTGAT 57.648 47.619 19.62 9.49 39.13 3.06
2518 8669 3.271729 TCTCTACCTCTCACGTGTGATC 58.728 50.000 19.62 0.00 39.13 2.92
2519 8670 2.007608 TCTACCTCTCACGTGTGATCG 58.992 52.381 19.62 14.87 39.13 3.69
2520 8671 1.064208 CTACCTCTCACGTGTGATCGG 59.936 57.143 19.62 19.24 39.13 4.18
2521 8672 1.517257 CCTCTCACGTGTGATCGGC 60.517 63.158 19.62 0.00 39.13 5.54
2522 8673 1.869574 CTCTCACGTGTGATCGGCG 60.870 63.158 19.62 0.00 39.13 6.46
2523 8674 2.880879 CTCACGTGTGATCGGCGG 60.881 66.667 16.51 0.00 39.13 6.13
2551 8702 3.966543 CCGGCACTGGAACCCCTT 61.967 66.667 0.00 0.00 0.00 3.95
2552 8703 2.115266 CGGCACTGGAACCCCTTT 59.885 61.111 0.00 0.00 0.00 3.11
2553 8704 1.530655 CGGCACTGGAACCCCTTTT 60.531 57.895 0.00 0.00 0.00 2.27
2554 8705 0.250989 CGGCACTGGAACCCCTTTTA 60.251 55.000 0.00 0.00 0.00 1.52
2555 8706 1.545841 GGCACTGGAACCCCTTTTAG 58.454 55.000 0.00 0.00 0.00 1.85
2556 8707 1.545841 GCACTGGAACCCCTTTTAGG 58.454 55.000 0.00 0.00 34.30 2.69
2571 8722 5.116882 CCTTTTAGGGTTCTAGTCATTCGG 58.883 45.833 0.00 0.00 0.00 4.30
2572 8723 3.814005 TTAGGGTTCTAGTCATTCGGC 57.186 47.619 0.00 0.00 0.00 5.54
2573 8724 1.568504 AGGGTTCTAGTCATTCGGCA 58.431 50.000 0.00 0.00 0.00 5.69
2574 8725 1.482593 AGGGTTCTAGTCATTCGGCAG 59.517 52.381 0.00 0.00 0.00 4.85
2575 8726 1.473434 GGGTTCTAGTCATTCGGCAGG 60.473 57.143 0.00 0.00 0.00 4.85
2576 8727 1.207329 GGTTCTAGTCATTCGGCAGGT 59.793 52.381 0.00 0.00 0.00 4.00
2577 8728 2.271800 GTTCTAGTCATTCGGCAGGTG 58.728 52.381 0.00 0.00 0.00 4.00
2578 8729 1.847328 TCTAGTCATTCGGCAGGTGA 58.153 50.000 0.00 0.00 0.00 4.02
2579 8730 2.176045 TCTAGTCATTCGGCAGGTGAA 58.824 47.619 0.00 0.00 0.00 3.18
2580 8731 2.766263 TCTAGTCATTCGGCAGGTGAAT 59.234 45.455 0.00 0.00 36.52 2.57
2586 8737 2.819595 CGGCAGGTGAATGTCGGG 60.820 66.667 0.00 0.00 44.32 5.14
2587 8738 3.134127 GGCAGGTGAATGTCGGGC 61.134 66.667 0.00 0.00 0.00 6.13
2588 8739 3.134127 GCAGGTGAATGTCGGGCC 61.134 66.667 0.00 0.00 0.00 5.80
2589 8740 2.438434 CAGGTGAATGTCGGGCCC 60.438 66.667 13.57 13.57 0.00 5.80
2590 8741 2.933287 AGGTGAATGTCGGGCCCA 60.933 61.111 24.92 6.15 0.00 5.36
2591 8742 2.750237 GGTGAATGTCGGGCCCAC 60.750 66.667 24.92 19.22 0.00 4.61
2592 8743 3.124921 GTGAATGTCGGGCCCACG 61.125 66.667 24.92 9.15 0.00 4.94
2593 8744 4.402528 TGAATGTCGGGCCCACGG 62.403 66.667 24.92 5.54 0.00 4.94
2594 8745 4.404098 GAATGTCGGGCCCACGGT 62.404 66.667 24.92 10.59 0.00 4.83
2595 8746 3.004354 AATGTCGGGCCCACGGTA 61.004 61.111 24.92 2.75 0.00 4.02
2596 8747 3.319441 AATGTCGGGCCCACGGTAC 62.319 63.158 24.92 11.72 0.00 3.34
2598 8749 4.446413 GTCGGGCCCACGGTACTG 62.446 72.222 24.92 1.98 0.00 2.74
2605 8756 2.189521 CCACGGTACTGGGATGGC 59.810 66.667 5.20 0.00 0.00 4.40
2606 8757 2.189521 CACGGTACTGGGATGGCC 59.810 66.667 6.65 0.00 0.00 5.36
2607 8758 3.467226 ACGGTACTGGGATGGCCG 61.467 66.667 6.65 0.00 46.83 6.13
2608 8759 4.910585 CGGTACTGGGATGGCCGC 62.911 72.222 0.00 0.00 35.90 6.53
2609 8760 4.564110 GGTACTGGGATGGCCGCC 62.564 72.222 1.04 1.04 33.83 6.13
2610 8761 3.480133 GTACTGGGATGGCCGCCT 61.480 66.667 11.61 0.00 33.83 5.52
2611 8762 3.161450 TACTGGGATGGCCGCCTC 61.161 66.667 11.61 5.68 33.83 4.70
2617 8768 3.161450 GATGGCCGCCTCCCAGTA 61.161 66.667 11.61 0.00 35.48 2.74
2618 8769 3.462199 GATGGCCGCCTCCCAGTAC 62.462 68.421 11.61 0.00 35.48 2.73
2622 8773 4.798682 CCGCCTCCCAGTACCCCT 62.799 72.222 0.00 0.00 0.00 4.79
2623 8774 3.470888 CGCCTCCCAGTACCCCTG 61.471 72.222 0.00 0.00 41.15 4.45
2632 8783 2.981859 CAGTACCCCTGGTCATGTAC 57.018 55.000 0.00 0.00 37.09 2.90
2633 8784 2.184533 CAGTACCCCTGGTCATGTACA 58.815 52.381 0.00 0.00 37.09 2.90
2634 8785 2.569853 CAGTACCCCTGGTCATGTACAA 59.430 50.000 0.00 0.00 37.09 2.41
2635 8786 3.199946 CAGTACCCCTGGTCATGTACAAT 59.800 47.826 0.00 0.00 37.09 2.71
2636 8787 4.407621 CAGTACCCCTGGTCATGTACAATA 59.592 45.833 0.00 0.00 37.09 1.90
2637 8788 3.926058 ACCCCTGGTCATGTACAATAC 57.074 47.619 0.00 0.59 0.00 1.89
2638 8789 2.508300 ACCCCTGGTCATGTACAATACC 59.492 50.000 18.57 18.57 0.00 2.73
2639 8790 2.158667 CCCCTGGTCATGTACAATACCC 60.159 54.545 21.17 10.96 0.00 3.69
2640 8791 2.507886 CCCTGGTCATGTACAATACCCA 59.492 50.000 21.17 14.14 0.00 4.51
2641 8792 3.541632 CCTGGTCATGTACAATACCCAC 58.458 50.000 21.17 4.70 0.00 4.61
2642 8793 3.541632 CTGGTCATGTACAATACCCACC 58.458 50.000 21.17 12.12 0.00 4.61
2643 8794 2.093394 TGGTCATGTACAATACCCACCG 60.093 50.000 21.17 0.00 0.00 4.94
2644 8795 2.093341 GGTCATGTACAATACCCACCGT 60.093 50.000 15.79 0.00 0.00 4.83
2645 8796 2.933906 GTCATGTACAATACCCACCGTG 59.066 50.000 0.00 0.00 0.00 4.94
2646 8797 2.832733 TCATGTACAATACCCACCGTGA 59.167 45.455 0.00 0.00 0.00 4.35
2647 8798 3.452990 TCATGTACAATACCCACCGTGAT 59.547 43.478 0.00 0.00 0.00 3.06
2648 8799 3.254470 TGTACAATACCCACCGTGATG 57.746 47.619 0.00 0.00 0.00 3.07
2649 8800 1.937899 GTACAATACCCACCGTGATGC 59.062 52.381 0.00 0.00 0.00 3.91
2650 8801 0.618458 ACAATACCCACCGTGATGCT 59.382 50.000 0.00 0.00 0.00 3.79
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
30 31 8.487028 ACACTTATTTTGGATTAGAGGGACTAG 58.513 37.037 0.00 0.00 41.55 2.57
33 34 7.393515 ACAACACTTATTTTGGATTAGAGGGAC 59.606 37.037 0.00 0.00 0.00 4.46
53 54 7.958674 TCAAATTTGAACTAAAAGCACAACAC 58.041 30.769 18.45 0.00 33.55 3.32
89 90 4.281688 CCATCCAATCCAAAACAAGTGTCT 59.718 41.667 0.00 0.00 0.00 3.41
133 134 5.305585 TGGACACCTGAAATTCAAGTCTAC 58.694 41.667 16.72 0.61 0.00 2.59
139 140 6.968263 TTACATTGGACACCTGAAATTCAA 57.032 33.333 0.00 0.00 0.00 2.69
147 148 2.754552 CCCACATTACATTGGACACCTG 59.245 50.000 0.00 0.00 34.46 4.00
227 229 8.721476 CGCAAAGAAACAAAATACGATGTATAC 58.279 33.333 0.00 0.00 0.00 1.47
248 2620 6.556212 TCACAAATACTGAAAGAAACGCAAA 58.444 32.000 0.00 0.00 37.43 3.68
332 2706 5.298276 GCGGGAGATTATGGTGTAAAAATCA 59.702 40.000 0.00 0.00 32.04 2.57
425 2799 4.429812 CGCATTGTCGTCGTTTCAAAAATC 60.430 41.667 0.00 0.00 0.00 2.17
426 2800 3.420576 CGCATTGTCGTCGTTTCAAAAAT 59.579 39.130 0.00 0.00 0.00 1.82
427 2801 2.778928 CGCATTGTCGTCGTTTCAAAAA 59.221 40.909 0.00 0.00 0.00 1.94
431 2805 0.781787 CTCGCATTGTCGTCGTTTCA 59.218 50.000 0.00 0.00 0.00 2.69
436 2810 2.839438 CTCGCTCGCATTGTCGTCG 61.839 63.158 0.00 0.00 0.00 5.12
488 2864 9.739276 AGACAAAGATATACATTTTTCTCCACA 57.261 29.630 0.00 0.00 0.00 4.17
504 2880 7.038729 CCCTCTCCATGCTATAAGACAAAGATA 60.039 40.741 0.00 0.00 0.00 1.98
505 2881 6.239829 CCCTCTCCATGCTATAAGACAAAGAT 60.240 42.308 0.00 0.00 0.00 2.40
506 2882 5.070981 CCCTCTCCATGCTATAAGACAAAGA 59.929 44.000 0.00 0.00 0.00 2.52
545 2921 1.196104 TTTTCCTCCCCGGTGATCGT 61.196 55.000 0.00 0.00 37.11 3.73
547 2923 1.280998 TCTTTTTCCTCCCCGGTGATC 59.719 52.381 0.00 0.00 0.00 2.92
553 2929 0.253327 CCCTCTCTTTTTCCTCCCCG 59.747 60.000 0.00 0.00 0.00 5.73
557 2934 5.188751 TGATTCTCTCCCTCTCTTTTTCCTC 59.811 44.000 0.00 0.00 0.00 3.71
560 2937 6.048732 ACTGATTCTCTCCCTCTCTTTTTC 57.951 41.667 0.00 0.00 0.00 2.29
563 2940 7.181845 ACAAATACTGATTCTCTCCCTCTCTTT 59.818 37.037 0.00 0.00 0.00 2.52
582 2959 9.929722 TGTTTTCATTCATATAGCGACAAATAC 57.070 29.630 0.00 0.00 0.00 1.89
627 3066 4.821805 TCCAAGAACTGTTAGCCTTTCAAG 59.178 41.667 0.00 0.00 0.00 3.02
857 3297 5.244626 AGAAAGATGGGTTCTGTTTGGATTG 59.755 40.000 0.00 0.00 34.03 2.67
858 3298 5.397360 AGAAAGATGGGTTCTGTTTGGATT 58.603 37.500 0.00 0.00 34.03 3.01
859 3299 5.003096 AGAAAGATGGGTTCTGTTTGGAT 57.997 39.130 0.00 0.00 34.03 3.41
860 3300 4.104738 AGAGAAAGATGGGTTCTGTTTGGA 59.895 41.667 0.00 0.00 35.46 3.53
919 3359 5.355350 GCTATGGCTGGTGATCCATTTATAC 59.645 44.000 0.00 0.00 43.43 1.47
942 3388 5.123502 CAGCAAGTATGATGATTCCTATGGC 59.876 44.000 0.00 0.00 45.81 4.40
943 3389 5.123502 GCAGCAAGTATGATGATTCCTATGG 59.876 44.000 0.00 0.00 45.81 2.74
944 3390 5.704053 TGCAGCAAGTATGATGATTCCTATG 59.296 40.000 0.00 0.00 45.81 2.23
945 3391 5.872963 TGCAGCAAGTATGATGATTCCTAT 58.127 37.500 0.00 0.00 45.81 2.57
946 3392 5.294734 TGCAGCAAGTATGATGATTCCTA 57.705 39.130 0.00 0.00 45.81 2.94
947 3393 4.160642 TGCAGCAAGTATGATGATTCCT 57.839 40.909 0.00 0.00 45.81 3.36
948 3394 4.906065 TTGCAGCAAGTATGATGATTCC 57.094 40.909 2.83 0.00 45.81 3.01
962 3408 3.968568 CAGCGCTGGTTTGCAGCA 61.969 61.111 29.88 0.00 45.31 4.41
987 3433 1.021390 GTGCCATCGGTCTCAGGTTG 61.021 60.000 0.00 0.00 0.00 3.77
1377 3871 3.383761 CGATATGCGGCATATGCAGATA 58.616 45.455 33.51 21.25 43.69 1.98
1573 4099 5.800296 TCTCCGATCCACAAAAAGATACAA 58.200 37.500 0.00 0.00 0.00 2.41
1576 4102 4.081142 TGCTCTCCGATCCACAAAAAGATA 60.081 41.667 0.00 0.00 0.00 1.98
1585 7704 2.107953 GCCTGCTCTCCGATCCAC 59.892 66.667 0.00 0.00 0.00 4.02
1660 7779 3.992427 GGAACAAACGAGTAGTTACCTGG 59.008 47.826 0.00 0.00 43.37 4.45
1671 7793 6.799925 AGTTTAATTTATGCGGAACAAACGAG 59.200 34.615 0.00 0.00 31.62 4.18
1673 7795 6.361214 ACAGTTTAATTTATGCGGAACAAACG 59.639 34.615 0.00 0.00 31.62 3.60
1676 7801 8.649973 AAAACAGTTTAATTTATGCGGAACAA 57.350 26.923 0.00 0.00 0.00 2.83
1708 7833 8.327271 CACCCATGAAAGATTCTATCTCCATAT 58.673 37.037 0.00 0.00 39.08 1.78
1709 7834 7.683578 CACCCATGAAAGATTCTATCTCCATA 58.316 38.462 0.00 0.00 39.08 2.74
1710 7835 6.540995 CACCCATGAAAGATTCTATCTCCAT 58.459 40.000 0.00 0.00 39.08 3.41
1732 7857 5.907197 ATAGCACGTACTAATTCATGCAC 57.093 39.130 0.00 0.00 35.51 4.57
1741 7866 9.507280 GTACAATACAGAAATAGCACGTACTAA 57.493 33.333 0.00 0.00 0.00 2.24
1820 7948 1.377536 GATCTTGACCTTGCCTCTGC 58.622 55.000 0.00 0.00 38.26 4.26
1825 7953 1.084370 CGACGGATCTTGACCTTGCC 61.084 60.000 0.00 0.00 0.00 4.52
1826 7954 1.084370 CCGACGGATCTTGACCTTGC 61.084 60.000 8.64 0.00 0.00 4.01
1853 8004 8.574251 ACTCGCACTATATCTCATCTTCTAAT 57.426 34.615 0.00 0.00 0.00 1.73
1863 8014 6.075310 CGAACTGAAAACTCGCACTATATCTC 60.075 42.308 0.00 0.00 0.00 2.75
1864 8015 5.744345 CGAACTGAAAACTCGCACTATATCT 59.256 40.000 0.00 0.00 0.00 1.98
1865 8016 5.742453 TCGAACTGAAAACTCGCACTATATC 59.258 40.000 0.00 0.00 32.66 1.63
1894 8045 9.331282 GGACACAAATAAAGCTACATATTCTCT 57.669 33.333 0.00 0.00 0.00 3.10
1895 8046 9.109393 TGGACACAAATAAAGCTACATATTCTC 57.891 33.333 0.00 0.00 0.00 2.87
1910 8061 3.056821 CGACTCAGAGGTGGACACAAATA 60.057 47.826 1.53 0.00 0.00 1.40
1911 8062 2.289072 CGACTCAGAGGTGGACACAAAT 60.289 50.000 1.53 0.00 0.00 2.32
1920 8071 1.201181 CTCCAAGACGACTCAGAGGTG 59.799 57.143 1.53 0.00 0.00 4.00
1922 8073 1.827681 TCTCCAAGACGACTCAGAGG 58.172 55.000 1.53 2.96 0.00 3.69
1951 8102 5.708230 GGTGGACACTCACAAATAACCAATA 59.292 40.000 2.13 0.00 39.27 1.90
1952 8103 4.522789 GGTGGACACTCACAAATAACCAAT 59.477 41.667 2.13 0.00 39.27 3.16
1953 8104 3.886505 GGTGGACACTCACAAATAACCAA 59.113 43.478 2.13 0.00 39.27 3.67
1954 8105 3.482436 GGTGGACACTCACAAATAACCA 58.518 45.455 2.13 0.00 39.27 3.67
1955 8106 2.817844 GGGTGGACACTCACAAATAACC 59.182 50.000 2.13 0.00 39.27 2.85
1956 8107 3.751518 AGGGTGGACACTCACAAATAAC 58.248 45.455 4.98 0.00 39.27 1.89
1957 8108 5.496556 CATAGGGTGGACACTCACAAATAA 58.503 41.667 4.98 0.00 39.27 1.40
1958 8109 5.097742 CATAGGGTGGACACTCACAAATA 57.902 43.478 4.98 0.00 39.27 1.40
1959 8110 3.955471 CATAGGGTGGACACTCACAAAT 58.045 45.455 4.98 0.00 39.27 2.32
1960 8111 3.417069 CATAGGGTGGACACTCACAAA 57.583 47.619 4.98 0.00 39.27 2.83
1972 8123 5.508489 GCACATTTGATGATTCCATAGGGTG 60.508 44.000 0.00 0.00 32.09 4.61
1973 8124 4.586001 GCACATTTGATGATTCCATAGGGT 59.414 41.667 0.00 0.00 32.09 4.34
1974 8125 4.585581 TGCACATTTGATGATTCCATAGGG 59.414 41.667 0.00 0.00 32.09 3.53
1975 8126 5.508489 GGTGCACATTTGATGATTCCATAGG 60.508 44.000 20.43 0.00 32.09 2.57
1976 8127 5.526115 GGTGCACATTTGATGATTCCATAG 58.474 41.667 20.43 0.00 32.09 2.23
1977 8128 4.036616 CGGTGCACATTTGATGATTCCATA 59.963 41.667 20.43 0.00 32.09 2.74
1978 8129 3.181484 CGGTGCACATTTGATGATTCCAT 60.181 43.478 20.43 0.00 35.29 3.41
1979 8130 2.164017 CGGTGCACATTTGATGATTCCA 59.836 45.455 20.43 0.00 0.00 3.53
1980 8131 2.423185 TCGGTGCACATTTGATGATTCC 59.577 45.455 20.43 0.00 0.00 3.01
1981 8132 3.127548 ACTCGGTGCACATTTGATGATTC 59.872 43.478 20.43 0.00 0.00 2.52
1982 8133 3.084039 ACTCGGTGCACATTTGATGATT 58.916 40.909 20.43 0.00 0.00 2.57
1983 8134 2.715046 ACTCGGTGCACATTTGATGAT 58.285 42.857 20.43 0.00 0.00 2.45
1984 8135 2.183478 ACTCGGTGCACATTTGATGA 57.817 45.000 20.43 3.44 0.00 2.92
1985 8136 2.587956 CAACTCGGTGCACATTTGATG 58.412 47.619 20.43 6.29 0.00 3.07
1986 8137 1.068333 GCAACTCGGTGCACATTTGAT 60.068 47.619 20.43 0.00 44.29 2.57
1987 8138 0.310543 GCAACTCGGTGCACATTTGA 59.689 50.000 20.43 9.48 44.29 2.69
1988 8139 0.664166 GGCAACTCGGTGCACATTTG 60.664 55.000 20.43 15.41 46.81 2.32
1989 8140 1.659794 GGCAACTCGGTGCACATTT 59.340 52.632 20.43 2.33 46.81 2.32
1990 8141 2.616330 CGGCAACTCGGTGCACATT 61.616 57.895 20.43 4.09 46.81 2.71
1991 8142 3.049674 CGGCAACTCGGTGCACAT 61.050 61.111 20.43 0.00 46.81 3.21
1992 8143 3.741830 TTCGGCAACTCGGTGCACA 62.742 57.895 20.43 0.00 46.81 4.57
1993 8144 1.852067 ATTTCGGCAACTCGGTGCAC 61.852 55.000 8.80 8.80 46.81 4.57
1994 8145 1.599518 ATTTCGGCAACTCGGTGCA 60.600 52.632 9.38 0.00 46.81 4.57
1995 8146 1.154225 CATTTCGGCAACTCGGTGC 60.154 57.895 0.00 0.00 44.14 5.01
1996 8147 0.591170 AACATTTCGGCAACTCGGTG 59.409 50.000 0.00 0.00 0.00 4.94
1997 8148 1.314730 AAACATTTCGGCAACTCGGT 58.685 45.000 0.00 0.00 0.00 4.69
1998 8149 2.415697 AAAACATTTCGGCAACTCGG 57.584 45.000 0.00 0.00 0.00 4.63
1999 8150 4.095610 GGATAAAACATTTCGGCAACTCG 58.904 43.478 0.00 0.00 0.00 4.18
2000 8151 4.157840 AGGGATAAAACATTTCGGCAACTC 59.842 41.667 0.00 0.00 0.00 3.01
2001 8152 4.086457 AGGGATAAAACATTTCGGCAACT 58.914 39.130 0.00 0.00 0.00 3.16
2002 8153 4.450082 AGGGATAAAACATTTCGGCAAC 57.550 40.909 0.00 0.00 0.00 4.17
2003 8154 4.322349 CCAAGGGATAAAACATTTCGGCAA 60.322 41.667 0.00 0.00 0.00 4.52
2004 8155 3.194542 CCAAGGGATAAAACATTTCGGCA 59.805 43.478 0.00 0.00 0.00 5.69
2005 8156 3.445805 TCCAAGGGATAAAACATTTCGGC 59.554 43.478 0.00 0.00 0.00 5.54
2006 8157 4.438200 CGTCCAAGGGATAAAACATTTCGG 60.438 45.833 0.00 0.00 32.73 4.30
2007 8158 4.155280 ACGTCCAAGGGATAAAACATTTCG 59.845 41.667 0.00 0.00 32.73 3.46
2008 8159 5.638596 ACGTCCAAGGGATAAAACATTTC 57.361 39.130 0.00 0.00 32.73 2.17
2009 8160 7.394923 TCATTACGTCCAAGGGATAAAACATTT 59.605 33.333 0.00 0.00 32.73 2.32
2010 8161 6.887545 TCATTACGTCCAAGGGATAAAACATT 59.112 34.615 0.00 0.00 32.73 2.71
2011 8162 6.317893 GTCATTACGTCCAAGGGATAAAACAT 59.682 38.462 0.00 0.00 32.73 2.71
2012 8163 5.644636 GTCATTACGTCCAAGGGATAAAACA 59.355 40.000 0.00 0.00 32.73 2.83
2013 8164 5.220529 CGTCATTACGTCCAAGGGATAAAAC 60.221 44.000 0.00 0.00 44.21 2.43
2014 8165 4.871557 CGTCATTACGTCCAAGGGATAAAA 59.128 41.667 0.00 0.00 44.21 1.52
2015 8166 4.435425 CGTCATTACGTCCAAGGGATAAA 58.565 43.478 0.00 0.00 44.21 1.40
2016 8167 4.049546 CGTCATTACGTCCAAGGGATAA 57.950 45.455 0.00 0.00 44.21 1.75
2017 8168 3.720949 CGTCATTACGTCCAAGGGATA 57.279 47.619 0.00 0.00 44.21 2.59
2018 8169 2.596904 CGTCATTACGTCCAAGGGAT 57.403 50.000 0.00 0.00 44.21 3.85
2029 8180 6.238022 GGTTAGGCAAAGTCATACGTCATTAC 60.238 42.308 0.00 0.00 0.00 1.89
2030 8181 5.813672 GGTTAGGCAAAGTCATACGTCATTA 59.186 40.000 0.00 0.00 0.00 1.90
2031 8182 4.634443 GGTTAGGCAAAGTCATACGTCATT 59.366 41.667 0.00 0.00 0.00 2.57
2032 8183 4.189231 GGTTAGGCAAAGTCATACGTCAT 58.811 43.478 0.00 0.00 0.00 3.06
2033 8184 3.007074 TGGTTAGGCAAAGTCATACGTCA 59.993 43.478 0.00 0.00 0.00 4.35
2034 8185 3.592059 TGGTTAGGCAAAGTCATACGTC 58.408 45.455 0.00 0.00 0.00 4.34
2035 8186 3.688694 TGGTTAGGCAAAGTCATACGT 57.311 42.857 0.00 0.00 0.00 3.57
2036 8187 3.181524 CGTTGGTTAGGCAAAGTCATACG 60.182 47.826 0.00 0.00 0.00 3.06
2037 8188 3.425758 GCGTTGGTTAGGCAAAGTCATAC 60.426 47.826 0.00 0.00 37.58 2.39
2038 8189 2.745281 GCGTTGGTTAGGCAAAGTCATA 59.255 45.455 0.00 0.00 37.58 2.15
2039 8190 1.539827 GCGTTGGTTAGGCAAAGTCAT 59.460 47.619 0.00 0.00 37.58 3.06
2040 8191 0.948678 GCGTTGGTTAGGCAAAGTCA 59.051 50.000 0.00 0.00 37.58 3.41
2041 8192 0.110373 CGCGTTGGTTAGGCAAAGTC 60.110 55.000 0.00 0.00 37.49 3.01
2042 8193 1.946267 CGCGTTGGTTAGGCAAAGT 59.054 52.632 0.00 0.00 37.49 2.66
2043 8194 1.442017 GCGCGTTGGTTAGGCAAAG 60.442 57.895 8.43 0.00 37.49 2.77
2044 8195 2.187493 TGCGCGTTGGTTAGGCAAA 61.187 52.632 8.43 0.00 37.49 3.68
2045 8196 2.592001 TGCGCGTTGGTTAGGCAA 60.592 55.556 8.43 0.00 37.49 4.52
2046 8197 2.437518 TAGTGCGCGTTGGTTAGGCA 62.438 55.000 8.43 0.00 37.49 4.75
2047 8198 1.738830 TAGTGCGCGTTGGTTAGGC 60.739 57.895 8.43 0.00 0.00 3.93
2048 8199 0.389426 AGTAGTGCGCGTTGGTTAGG 60.389 55.000 8.43 0.00 0.00 2.69
2049 8200 1.425412 AAGTAGTGCGCGTTGGTTAG 58.575 50.000 8.43 0.00 0.00 2.34
2050 8201 1.868469 AAAGTAGTGCGCGTTGGTTA 58.132 45.000 8.43 0.00 0.00 2.85
2051 8202 1.018910 AAAAGTAGTGCGCGTTGGTT 58.981 45.000 8.43 0.00 0.00 3.67
2052 8203 1.018910 AAAAAGTAGTGCGCGTTGGT 58.981 45.000 8.43 0.00 0.00 3.67
2053 8204 3.837669 AAAAAGTAGTGCGCGTTGG 57.162 47.368 8.43 0.00 0.00 3.77
2068 8219 7.201644 GGAGACGATCATTGCTAGATTGAAAAA 60.202 37.037 0.00 0.00 32.38 1.94
2069 8220 6.258727 GGAGACGATCATTGCTAGATTGAAAA 59.741 38.462 0.00 0.00 32.38 2.29
2070 8221 5.755375 GGAGACGATCATTGCTAGATTGAAA 59.245 40.000 0.00 0.00 32.38 2.69
2071 8222 5.163416 TGGAGACGATCATTGCTAGATTGAA 60.163 40.000 0.00 0.00 32.38 2.69
2072 8223 4.342092 TGGAGACGATCATTGCTAGATTGA 59.658 41.667 0.00 0.00 32.38 2.57
2073 8224 4.625028 TGGAGACGATCATTGCTAGATTG 58.375 43.478 0.00 0.00 33.88 2.67
2074 8225 4.944619 TGGAGACGATCATTGCTAGATT 57.055 40.909 0.00 0.00 0.00 2.40
2075 8226 4.944619 TTGGAGACGATCATTGCTAGAT 57.055 40.909 0.00 0.00 0.00 1.98
2076 8227 4.736126 TTTGGAGACGATCATTGCTAGA 57.264 40.909 0.00 0.00 0.00 2.43
2077 8228 5.801350 TTTTTGGAGACGATCATTGCTAG 57.199 39.130 0.00 0.00 0.00 3.42
2078 8229 7.857734 TTATTTTTGGAGACGATCATTGCTA 57.142 32.000 0.00 0.00 0.00 3.49
2079 8230 6.757897 TTATTTTTGGAGACGATCATTGCT 57.242 33.333 0.00 0.00 0.00 3.91
2080 8231 7.992180 AATTATTTTTGGAGACGATCATTGC 57.008 32.000 0.00 0.00 0.00 3.56
2082 8233 9.683069 GCATAATTATTTTTGGAGACGATCATT 57.317 29.630 0.00 0.00 0.00 2.57
2083 8234 8.299570 GGCATAATTATTTTTGGAGACGATCAT 58.700 33.333 0.00 0.00 0.00 2.45
2084 8235 7.284261 TGGCATAATTATTTTTGGAGACGATCA 59.716 33.333 0.00 0.00 0.00 2.92
2085 8236 7.648142 TGGCATAATTATTTTTGGAGACGATC 58.352 34.615 0.00 0.00 0.00 3.69
2086 8237 7.581213 TGGCATAATTATTTTTGGAGACGAT 57.419 32.000 0.00 0.00 0.00 3.73
2087 8238 7.397892 TTGGCATAATTATTTTTGGAGACGA 57.602 32.000 0.00 0.00 0.00 4.20
2088 8239 8.647143 ATTTGGCATAATTATTTTTGGAGACG 57.353 30.769 0.00 0.00 0.00 4.18
2336 8487 9.716531 TGAGAGGCAGAGAATATAATACATTTG 57.283 33.333 0.00 0.00 0.00 2.32
2338 8489 9.887629 CATGAGAGGCAGAGAATATAATACATT 57.112 33.333 0.00 0.00 0.00 2.71
2339 8490 9.044646 ACATGAGAGGCAGAGAATATAATACAT 57.955 33.333 0.00 0.00 0.00 2.29
2340 8491 8.309656 CACATGAGAGGCAGAGAATATAATACA 58.690 37.037 0.00 0.00 0.00 2.29
2341 8492 8.526978 TCACATGAGAGGCAGAGAATATAATAC 58.473 37.037 0.00 0.00 0.00 1.89
2342 8493 8.655935 TCACATGAGAGGCAGAGAATATAATA 57.344 34.615 0.00 0.00 0.00 0.98
2343 8494 7.550597 TCACATGAGAGGCAGAGAATATAAT 57.449 36.000 0.00 0.00 0.00 1.28
2344 8495 6.983906 TCACATGAGAGGCAGAGAATATAA 57.016 37.500 0.00 0.00 0.00 0.98
2345 8496 6.983906 TTCACATGAGAGGCAGAGAATATA 57.016 37.500 0.00 0.00 0.00 0.86
2346 8497 5.883685 TTCACATGAGAGGCAGAGAATAT 57.116 39.130 0.00 0.00 0.00 1.28
2347 8498 5.883685 ATTCACATGAGAGGCAGAGAATA 57.116 39.130 0.00 0.00 0.00 1.75
2348 8499 4.774660 ATTCACATGAGAGGCAGAGAAT 57.225 40.909 0.00 0.00 0.00 2.40
2349 8500 4.958581 TCTATTCACATGAGAGGCAGAGAA 59.041 41.667 0.00 0.00 0.00 2.87
2350 8501 4.540715 TCTATTCACATGAGAGGCAGAGA 58.459 43.478 0.00 0.00 0.00 3.10
2351 8502 4.873817 CTCTATTCACATGAGAGGCAGAG 58.126 47.826 0.00 6.54 34.31 3.35
2352 8503 4.933505 CTCTATTCACATGAGAGGCAGA 57.066 45.455 0.00 0.30 34.31 4.26
2357 8508 3.312890 ACCCCCTCTATTCACATGAGAG 58.687 50.000 0.00 0.00 37.13 3.20
2358 8509 3.421394 ACCCCCTCTATTCACATGAGA 57.579 47.619 0.00 0.00 0.00 3.27
2359 8510 4.901849 TCTTACCCCCTCTATTCACATGAG 59.098 45.833 0.00 0.00 0.00 2.90
2360 8511 4.890988 TCTTACCCCCTCTATTCACATGA 58.109 43.478 0.00 0.00 0.00 3.07
2361 8512 4.040952 CCTCTTACCCCCTCTATTCACATG 59.959 50.000 0.00 0.00 0.00 3.21
2362 8513 4.235372 CCTCTTACCCCCTCTATTCACAT 58.765 47.826 0.00 0.00 0.00 3.21
2363 8514 3.632645 CCCTCTTACCCCCTCTATTCACA 60.633 52.174 0.00 0.00 0.00 3.58
2364 8515 2.973406 CCCTCTTACCCCCTCTATTCAC 59.027 54.545 0.00 0.00 0.00 3.18
2365 8516 2.869689 TCCCTCTTACCCCCTCTATTCA 59.130 50.000 0.00 0.00 0.00 2.57
2366 8517 3.512496 CTCCCTCTTACCCCCTCTATTC 58.488 54.545 0.00 0.00 0.00 1.75
2367 8518 2.428038 GCTCCCTCTTACCCCCTCTATT 60.428 54.545 0.00 0.00 0.00 1.73
2368 8519 1.150347 GCTCCCTCTTACCCCCTCTAT 59.850 57.143 0.00 0.00 0.00 1.98
2369 8520 0.561680 GCTCCCTCTTACCCCCTCTA 59.438 60.000 0.00 0.00 0.00 2.43
2370 8521 1.315216 GCTCCCTCTTACCCCCTCT 59.685 63.158 0.00 0.00 0.00 3.69
2371 8522 0.400670 ATGCTCCCTCTTACCCCCTC 60.401 60.000 0.00 0.00 0.00 4.30
2372 8523 0.695803 CATGCTCCCTCTTACCCCCT 60.696 60.000 0.00 0.00 0.00 4.79
2373 8524 0.988678 ACATGCTCCCTCTTACCCCC 60.989 60.000 0.00 0.00 0.00 5.40
2374 8525 0.919710 AACATGCTCCCTCTTACCCC 59.080 55.000 0.00 0.00 0.00 4.95
2375 8526 3.454812 TCTTAACATGCTCCCTCTTACCC 59.545 47.826 0.00 0.00 0.00 3.69
2376 8527 4.162509 AGTCTTAACATGCTCCCTCTTACC 59.837 45.833 0.00 0.00 0.00 2.85
2377 8528 5.112686 CAGTCTTAACATGCTCCCTCTTAC 58.887 45.833 0.00 0.00 0.00 2.34
2378 8529 4.383118 GCAGTCTTAACATGCTCCCTCTTA 60.383 45.833 0.00 0.00 37.00 2.10
2379 8530 3.620966 GCAGTCTTAACATGCTCCCTCTT 60.621 47.826 0.00 0.00 37.00 2.85
2380 8531 2.093235 GCAGTCTTAACATGCTCCCTCT 60.093 50.000 0.00 0.00 37.00 3.69
2381 8532 2.284190 GCAGTCTTAACATGCTCCCTC 58.716 52.381 0.00 0.00 37.00 4.30
2382 8533 2.409948 GCAGTCTTAACATGCTCCCT 57.590 50.000 0.00 0.00 37.00 4.20
2387 8538 5.557891 ATTCTTGAGCAGTCTTAACATGC 57.442 39.130 0.00 0.00 40.29 4.06
2393 8544 9.618890 AGCAATAATAATTCTTGAGCAGTCTTA 57.381 29.630 0.00 0.00 0.00 2.10
2394 8545 8.404000 CAGCAATAATAATTCTTGAGCAGTCTT 58.596 33.333 0.00 0.00 0.00 3.01
2395 8546 7.468357 GCAGCAATAATAATTCTTGAGCAGTCT 60.468 37.037 0.00 0.00 0.00 3.24
2396 8547 6.636044 GCAGCAATAATAATTCTTGAGCAGTC 59.364 38.462 0.00 0.00 0.00 3.51
2397 8548 6.095860 TGCAGCAATAATAATTCTTGAGCAGT 59.904 34.615 0.00 0.00 32.50 4.40
2398 8549 6.500910 TGCAGCAATAATAATTCTTGAGCAG 58.499 36.000 0.00 0.00 32.50 4.24
2399 8550 6.453926 TGCAGCAATAATAATTCTTGAGCA 57.546 33.333 0.00 0.00 33.26 4.26
2400 8551 7.760131 TTTGCAGCAATAATAATTCTTGAGC 57.240 32.000 9.12 0.00 0.00 4.26
2402 8553 9.656040 ACAATTTGCAGCAATAATAATTCTTGA 57.344 25.926 9.12 0.00 0.00 3.02
2408 8559 9.097257 GGTTGTACAATTTGCAGCAATAATAAT 57.903 29.630 12.26 0.00 0.00 1.28
2409 8560 8.310382 AGGTTGTACAATTTGCAGCAATAATAA 58.690 29.630 12.26 0.00 0.00 1.40
2410 8561 7.835822 AGGTTGTACAATTTGCAGCAATAATA 58.164 30.769 12.26 0.00 0.00 0.98
2411 8562 6.700352 AGGTTGTACAATTTGCAGCAATAAT 58.300 32.000 12.26 0.00 0.00 1.28
2412 8563 6.095432 AGGTTGTACAATTTGCAGCAATAA 57.905 33.333 12.26 0.00 0.00 1.40
2413 8564 5.720371 AGGTTGTACAATTTGCAGCAATA 57.280 34.783 12.26 0.40 0.00 1.90
2414 8565 4.605640 AGGTTGTACAATTTGCAGCAAT 57.394 36.364 12.26 0.00 0.00 3.56
2415 8566 4.399004 AAGGTTGTACAATTTGCAGCAA 57.601 36.364 12.26 2.83 0.00 3.91
2416 8567 5.521906 TTAAGGTTGTACAATTTGCAGCA 57.478 34.783 12.26 0.00 0.00 4.41
2417 8568 5.176774 GGTTTAAGGTTGTACAATTTGCAGC 59.823 40.000 12.26 6.94 0.00 5.25
2418 8569 6.276847 TGGTTTAAGGTTGTACAATTTGCAG 58.723 36.000 12.26 0.00 0.00 4.41
2419 8570 6.222038 TGGTTTAAGGTTGTACAATTTGCA 57.778 33.333 12.26 0.00 0.00 4.08
2420 8571 7.571892 CAATGGTTTAAGGTTGTACAATTTGC 58.428 34.615 12.26 0.00 0.00 3.68
2421 8572 7.440856 AGCAATGGTTTAAGGTTGTACAATTTG 59.559 33.333 12.26 0.00 0.00 2.32
2422 8573 7.505258 AGCAATGGTTTAAGGTTGTACAATTT 58.495 30.769 12.26 11.79 0.00 1.82
2423 8574 7.061566 AGCAATGGTTTAAGGTTGTACAATT 57.938 32.000 12.26 5.63 0.00 2.32
2424 8575 6.664428 AGCAATGGTTTAAGGTTGTACAAT 57.336 33.333 12.26 0.00 0.00 2.71
2425 8576 6.472686 AAGCAATGGTTTAAGGTTGTACAA 57.527 33.333 3.59 3.59 0.00 2.41
2426 8577 7.584122 TTAAGCAATGGTTTAAGGTTGTACA 57.416 32.000 2.10 0.00 0.00 2.90
2427 8578 7.062956 GCATTAAGCAATGGTTTAAGGTTGTAC 59.937 37.037 2.10 0.00 44.79 2.90
2428 8579 7.093992 GCATTAAGCAATGGTTTAAGGTTGTA 58.906 34.615 2.10 0.00 44.79 2.41
2429 8580 5.931724 GCATTAAGCAATGGTTTAAGGTTGT 59.068 36.000 2.10 0.00 44.79 3.32
2430 8581 6.407475 GCATTAAGCAATGGTTTAAGGTTG 57.593 37.500 2.10 0.00 44.79 3.77
2445 8596 3.243535 GCTCTTACATTGGGGCATTAAGC 60.244 47.826 0.00 0.00 44.65 3.09
2446 8597 3.953612 TGCTCTTACATTGGGGCATTAAG 59.046 43.478 0.00 0.00 0.00 1.85
2447 8598 3.699038 GTGCTCTTACATTGGGGCATTAA 59.301 43.478 0.00 0.00 32.38 1.40
2448 8599 3.287222 GTGCTCTTACATTGGGGCATTA 58.713 45.455 0.00 0.00 32.38 1.90
2449 8600 2.102578 GTGCTCTTACATTGGGGCATT 58.897 47.619 0.00 0.00 32.38 3.56
2450 8601 1.005805 TGTGCTCTTACATTGGGGCAT 59.994 47.619 0.00 0.00 32.38 4.40
2451 8602 0.403655 TGTGCTCTTACATTGGGGCA 59.596 50.000 0.00 0.00 0.00 5.36
2452 8603 0.811281 GTGTGCTCTTACATTGGGGC 59.189 55.000 0.00 0.00 32.43 5.80
2453 8604 1.271871 TGGTGTGCTCTTACATTGGGG 60.272 52.381 0.00 0.00 32.43 4.96
2454 8605 2.198827 TGGTGTGCTCTTACATTGGG 57.801 50.000 0.00 0.00 32.43 4.12
2455 8606 3.770263 CATGGTGTGCTCTTACATTGG 57.230 47.619 0.00 0.00 32.43 3.16
2467 8618 2.815211 CGACCTCCGCATGGTGTG 60.815 66.667 0.00 0.00 38.03 3.82
2468 8619 3.296709 GACGACCTCCGCATGGTGT 62.297 63.158 0.00 0.00 43.32 4.16
2469 8620 2.509336 GACGACCTCCGCATGGTG 60.509 66.667 0.00 0.00 43.32 4.17
2470 8621 4.129737 CGACGACCTCCGCATGGT 62.130 66.667 0.00 0.00 43.32 3.55
2471 8622 4.873129 CCGACGACCTCCGCATGG 62.873 72.222 0.00 0.00 43.32 3.66
2472 8623 4.873129 CCCGACGACCTCCGCATG 62.873 72.222 0.00 0.00 43.32 4.06
2481 8632 1.726533 GAGATCAGGTCCCCGACGAC 61.727 65.000 0.00 0.00 32.65 4.34
2482 8633 1.453379 GAGATCAGGTCCCCGACGA 60.453 63.158 0.00 0.00 32.65 4.20
2483 8634 0.179026 TAGAGATCAGGTCCCCGACG 60.179 60.000 0.00 0.00 32.65 5.12
2484 8635 1.320507 GTAGAGATCAGGTCCCCGAC 58.679 60.000 0.00 0.00 0.00 4.79
2485 8636 0.185416 GGTAGAGATCAGGTCCCCGA 59.815 60.000 0.00 0.00 0.00 5.14
2486 8637 0.186386 AGGTAGAGATCAGGTCCCCG 59.814 60.000 0.00 0.00 0.00 5.73
2487 8638 1.501604 AGAGGTAGAGATCAGGTCCCC 59.498 57.143 0.00 0.00 0.00 4.81
2488 8639 2.175931 TGAGAGGTAGAGATCAGGTCCC 59.824 54.545 0.00 0.00 0.00 4.46
2489 8640 3.219281 GTGAGAGGTAGAGATCAGGTCC 58.781 54.545 0.00 0.00 0.00 4.46
2490 8641 2.875933 CGTGAGAGGTAGAGATCAGGTC 59.124 54.545 0.00 0.00 0.00 3.85
2491 8642 2.240160 ACGTGAGAGGTAGAGATCAGGT 59.760 50.000 0.00 0.00 36.32 4.00
2492 8643 2.616376 CACGTGAGAGGTAGAGATCAGG 59.384 54.545 10.90 0.00 34.58 3.86
2493 8644 3.064682 CACACGTGAGAGGTAGAGATCAG 59.935 52.174 25.01 0.00 0.00 2.90
2494 8645 3.010420 CACACGTGAGAGGTAGAGATCA 58.990 50.000 25.01 0.00 0.00 2.92
2495 8646 3.271729 TCACACGTGAGAGGTAGAGATC 58.728 50.000 25.01 0.00 34.14 2.75
2496 8647 3.351794 TCACACGTGAGAGGTAGAGAT 57.648 47.619 25.01 0.00 34.14 2.75
2497 8648 2.853235 TCACACGTGAGAGGTAGAGA 57.147 50.000 25.01 2.78 34.14 3.10
2498 8649 2.031068 CGATCACACGTGAGAGGTAGAG 59.969 54.545 25.01 5.30 43.61 2.43
2499 8650 2.007608 CGATCACACGTGAGAGGTAGA 58.992 52.381 25.01 8.21 43.61 2.59
2500 8651 1.064208 CCGATCACACGTGAGAGGTAG 59.936 57.143 25.01 11.88 43.61 3.18
2501 8652 1.092348 CCGATCACACGTGAGAGGTA 58.908 55.000 25.01 0.00 43.61 3.08
2502 8653 1.883732 CCGATCACACGTGAGAGGT 59.116 57.895 25.01 5.57 43.61 3.85
2503 8654 1.517257 GCCGATCACACGTGAGAGG 60.517 63.158 25.01 18.58 43.61 3.69
2504 8655 1.869574 CGCCGATCACACGTGAGAG 60.870 63.158 25.01 11.69 43.61 3.20
2505 8656 2.178273 CGCCGATCACACGTGAGA 59.822 61.111 25.01 21.23 43.61 3.27
2506 8657 2.880879 CCGCCGATCACACGTGAG 60.881 66.667 25.01 15.63 43.61 3.51
2534 8685 2.994643 AAAAGGGGTTCCAGTGCCGG 62.995 60.000 0.00 0.00 34.83 6.13
2535 8686 0.250989 TAAAAGGGGTTCCAGTGCCG 60.251 55.000 0.00 0.00 34.83 5.69
2536 8687 1.545841 CTAAAAGGGGTTCCAGTGCC 58.454 55.000 0.00 0.00 34.83 5.01
2537 8688 1.545841 CCTAAAAGGGGTTCCAGTGC 58.454 55.000 0.00 0.00 34.83 4.40
2548 8699 5.116882 CCGAATGACTAGAACCCTAAAAGG 58.883 45.833 0.00 0.00 34.30 3.11
2549 8700 4.571176 GCCGAATGACTAGAACCCTAAAAG 59.429 45.833 0.00 0.00 0.00 2.27
2550 8701 4.020039 TGCCGAATGACTAGAACCCTAAAA 60.020 41.667 0.00 0.00 0.00 1.52
2551 8702 3.516300 TGCCGAATGACTAGAACCCTAAA 59.484 43.478 0.00 0.00 0.00 1.85
2552 8703 3.101437 TGCCGAATGACTAGAACCCTAA 58.899 45.455 0.00 0.00 0.00 2.69
2553 8704 2.693591 CTGCCGAATGACTAGAACCCTA 59.306 50.000 0.00 0.00 0.00 3.53
2554 8705 1.482593 CTGCCGAATGACTAGAACCCT 59.517 52.381 0.00 0.00 0.00 4.34
2555 8706 1.473434 CCTGCCGAATGACTAGAACCC 60.473 57.143 0.00 0.00 0.00 4.11
2556 8707 1.207329 ACCTGCCGAATGACTAGAACC 59.793 52.381 0.00 0.00 0.00 3.62
2557 8708 2.094182 TCACCTGCCGAATGACTAGAAC 60.094 50.000 0.00 0.00 0.00 3.01
2558 8709 2.176045 TCACCTGCCGAATGACTAGAA 58.824 47.619 0.00 0.00 0.00 2.10
2559 8710 1.847328 TCACCTGCCGAATGACTAGA 58.153 50.000 0.00 0.00 0.00 2.43
2560 8711 2.672961 TTCACCTGCCGAATGACTAG 57.327 50.000 0.00 0.00 0.00 2.57
2566 8717 0.744414 CCGACATTCACCTGCCGAAT 60.744 55.000 0.00 0.00 33.33 3.34
2567 8718 1.375396 CCGACATTCACCTGCCGAA 60.375 57.895 0.00 0.00 0.00 4.30
2568 8719 2.264480 CCGACATTCACCTGCCGA 59.736 61.111 0.00 0.00 0.00 5.54
2569 8720 2.819595 CCCGACATTCACCTGCCG 60.820 66.667 0.00 0.00 0.00 5.69
2570 8721 3.134127 GCCCGACATTCACCTGCC 61.134 66.667 0.00 0.00 0.00 4.85
2571 8722 3.134127 GGCCCGACATTCACCTGC 61.134 66.667 0.00 0.00 0.00 4.85
2572 8723 2.438434 GGGCCCGACATTCACCTG 60.438 66.667 5.69 0.00 0.00 4.00
2573 8724 2.933287 TGGGCCCGACATTCACCT 60.933 61.111 19.37 0.00 0.00 4.00
2574 8725 2.750237 GTGGGCCCGACATTCACC 60.750 66.667 19.37 0.00 0.00 4.02
2575 8726 3.124921 CGTGGGCCCGACATTCAC 61.125 66.667 19.37 6.70 0.00 3.18
2576 8727 4.402528 CCGTGGGCCCGACATTCA 62.403 66.667 19.37 0.00 0.00 2.57
2577 8728 3.021473 TACCGTGGGCCCGACATTC 62.021 63.158 19.37 2.06 0.00 2.67
2578 8729 3.004354 TACCGTGGGCCCGACATT 61.004 61.111 19.37 8.39 0.00 2.71
2579 8730 3.777910 GTACCGTGGGCCCGACAT 61.778 66.667 19.37 5.37 0.00 3.06
2581 8732 4.446413 CAGTACCGTGGGCCCGAC 62.446 72.222 19.37 15.47 0.00 4.79
2588 8739 2.189521 GCCATCCCAGTACCGTGG 59.810 66.667 0.00 0.00 37.34 4.94
2589 8740 2.189521 GGCCATCCCAGTACCGTG 59.810 66.667 0.00 0.00 0.00 4.94
2590 8741 3.467226 CGGCCATCCCAGTACCGT 61.467 66.667 2.24 0.00 39.05 4.83
2591 8742 4.910585 GCGGCCATCCCAGTACCG 62.911 72.222 2.24 0.00 46.50 4.02
2592 8743 4.564110 GGCGGCCATCCCAGTACC 62.564 72.222 15.62 0.00 0.00 3.34
2593 8744 3.462199 GAGGCGGCCATCCCAGTAC 62.462 68.421 23.09 0.00 0.00 2.73
2594 8745 3.161450 GAGGCGGCCATCCCAGTA 61.161 66.667 23.09 0.00 0.00 2.74
2600 8751 3.161450 TACTGGGAGGCGGCCATC 61.161 66.667 23.09 15.03 0.00 3.51
2601 8752 3.480133 GTACTGGGAGGCGGCCAT 61.480 66.667 23.09 6.21 0.00 4.40
2605 8756 4.798682 AGGGGTACTGGGAGGCGG 62.799 72.222 0.00 0.00 0.00 6.13
2606 8757 3.470888 CAGGGGTACTGGGAGGCG 61.471 72.222 0.00 0.00 43.70 5.52
2614 8765 2.634639 TGTACATGACCAGGGGTACT 57.365 50.000 0.00 0.00 35.25 2.73
2615 8766 3.926058 ATTGTACATGACCAGGGGTAC 57.074 47.619 0.00 0.00 35.25 3.34
2616 8767 3.712733 GGTATTGTACATGACCAGGGGTA 59.287 47.826 17.69 0.00 35.25 3.69
2617 8768 2.508300 GGTATTGTACATGACCAGGGGT 59.492 50.000 17.69 0.00 39.44 4.95
2618 8769 2.158667 GGGTATTGTACATGACCAGGGG 60.159 54.545 21.92 0.00 33.33 4.79
2619 8770 2.507886 TGGGTATTGTACATGACCAGGG 59.492 50.000 21.92 0.00 33.33 4.45
2620 8771 3.541632 GTGGGTATTGTACATGACCAGG 58.458 50.000 21.92 0.00 33.33 4.45
2621 8772 3.541632 GGTGGGTATTGTACATGACCAG 58.458 50.000 21.92 0.00 33.33 4.00
2622 8773 2.093394 CGGTGGGTATTGTACATGACCA 60.093 50.000 21.92 14.22 33.33 4.02
2623 8774 2.093341 ACGGTGGGTATTGTACATGACC 60.093 50.000 15.32 15.32 0.00 4.02
2624 8775 2.933906 CACGGTGGGTATTGTACATGAC 59.066 50.000 0.00 0.00 0.00 3.06
2625 8776 2.832733 TCACGGTGGGTATTGTACATGA 59.167 45.455 8.50 0.00 0.00 3.07
2626 8777 3.254470 TCACGGTGGGTATTGTACATG 57.746 47.619 8.50 0.00 0.00 3.21
2627 8778 3.804036 CATCACGGTGGGTATTGTACAT 58.196 45.455 8.50 0.00 0.00 2.29
2628 8779 2.678479 GCATCACGGTGGGTATTGTACA 60.678 50.000 8.50 0.00 0.00 2.90
2629 8780 1.937899 GCATCACGGTGGGTATTGTAC 59.062 52.381 8.50 0.00 0.00 2.90
2630 8781 1.834896 AGCATCACGGTGGGTATTGTA 59.165 47.619 8.50 0.00 0.00 2.41
2631 8782 0.618458 AGCATCACGGTGGGTATTGT 59.382 50.000 8.50 0.00 0.00 2.71
2632 8783 3.476740 AGCATCACGGTGGGTATTG 57.523 52.632 8.50 0.70 0.00 1.90


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.