Multiple sequence alignment - TraesCS2A01G190500

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS2A01G190500 chr2A 100.000 4335 0 0 1 4335 157116549 157112215 0.000000e+00 8006.0
1 TraesCS2A01G190500 chr2D 96.399 3693 110 10 1 3687 144564741 144568416 0.000000e+00 6061.0
2 TraesCS2A01G190500 chr2D 89.426 662 53 8 3684 4335 144568697 144569351 0.000000e+00 819.0
3 TraesCS2A01G190500 chr2D 89.062 64 4 2 3725 3788 587187538 587187598 4.650000e-10 76.8
4 TraesCS2A01G190500 chr2B 93.715 3755 135 39 1 3710 202595092 202598790 0.000000e+00 5533.0
5 TraesCS2A01G190500 chr2B 91.667 480 36 2 3856 4335 202600339 202600814 0.000000e+00 662.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS2A01G190500 chr2A 157112215 157116549 4334 True 8006.0 8006 100.0000 1 4335 1 chr2A.!!$R1 4334
1 TraesCS2A01G190500 chr2D 144564741 144569351 4610 False 3440.0 6061 92.9125 1 4335 2 chr2D.!!$F2 4334
2 TraesCS2A01G190500 chr2B 202595092 202600814 5722 False 3097.5 5533 92.6910 1 4335 2 chr2B.!!$F1 4334

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
675 695 0.025001 GACGACGCGGTGATTGATTG 59.975 55.0 12.47 0.0 0.00 2.67 F
942 972 0.103026 CGCTCCGATCCTTGACATCA 59.897 55.0 0.00 0.0 0.00 3.07 F
1411 1445 0.320421 TGGCGTCAAGAAGCAGGTAC 60.320 55.0 10.00 0.0 37.55 3.34 F
2613 2653 0.967887 CCCTGACGAGAGGAAGCTGA 60.968 60.0 6.11 0.0 34.69 4.26 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2298 2332 0.692476 CTCCATTGTCACCACCTCCA 59.308 55.0 0.0 0.0 0.00 3.86 R
2437 2471 0.731514 GAACGACGCCGATCAGTTCA 60.732 55.0 0.0 0.0 40.41 3.18 R
3047 3087 0.892063 AGGGTCTTCTTCAGCGAGAC 59.108 55.0 0.0 0.0 39.19 3.36 R
4021 5754 0.252012 CCTAGCTCGGATGGGGAGAT 60.252 60.0 0.0 0.0 33.27 2.75 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
84 85 6.922407 TCGCATCATCAGATCTCTTAAAGAAG 59.078 38.462 0.00 0.00 37.61 2.85
85 86 6.346758 CGCATCATCAGATCTCTTAAAGAAGC 60.347 42.308 0.00 0.00 37.61 3.86
150 151 2.698803 CTCATGGTGAATGACGGAACA 58.301 47.619 0.00 0.00 40.50 3.18
211 212 3.627041 TGATATTCAGAGCCTCCTCCT 57.373 47.619 0.00 0.00 38.96 3.69
290 298 1.069765 ATCCGTCCAGCTTATGCCG 59.930 57.895 0.00 0.00 40.80 5.69
300 308 2.095213 CAGCTTATGCCGTCGCTAAAAA 59.905 45.455 0.00 0.00 40.80 1.94
330 338 1.165270 AAAATTTCGGTCCTCTGGCG 58.835 50.000 0.00 0.00 0.00 5.69
422 433 4.803426 GTCTGCGTGCTCCCTCCG 62.803 72.222 0.00 0.00 0.00 4.63
461 478 2.617274 GGCAAAGTCACCGTGCTCC 61.617 63.158 0.61 0.00 38.36 4.70
478 495 3.880846 CGCCAAATGCCGAGAGCC 61.881 66.667 0.00 0.00 42.71 4.70
490 507 3.978571 GAGAGCCCGTTGAAGCCCC 62.979 68.421 0.00 0.00 0.00 5.80
524 544 1.660575 GTACGATCCGTCCATGGCG 60.661 63.158 18.11 18.11 41.54 5.69
571 591 2.162608 TGGTTCAACACTCCAACAAACG 59.837 45.455 0.00 0.00 0.00 3.60
590 610 2.164219 ACGCCAATTACTTGCATCAAGG 59.836 45.455 10.80 0.00 44.81 3.61
672 692 2.126228 GGACGACGCGGTGATTGA 60.126 61.111 12.47 0.00 0.00 2.57
673 693 1.518572 GGACGACGCGGTGATTGAT 60.519 57.895 12.47 0.00 0.00 2.57
674 694 1.082117 GGACGACGCGGTGATTGATT 61.082 55.000 12.47 0.00 0.00 2.57
675 695 0.025001 GACGACGCGGTGATTGATTG 59.975 55.000 12.47 0.00 0.00 2.67
711 731 2.166907 TGACCCTCTCTTGGATCCTC 57.833 55.000 14.23 0.00 0.00 3.71
758 778 3.483738 GCAAATCTACCGAGAAAACGCTC 60.484 47.826 0.00 0.00 34.61 5.03
759 779 2.580966 ATCTACCGAGAAAACGCTCC 57.419 50.000 0.00 0.00 34.61 4.70
761 781 0.801067 CTACCGAGAAAACGCTCCGG 60.801 60.000 0.00 0.00 35.85 5.14
762 782 1.243342 TACCGAGAAAACGCTCCGGA 61.243 55.000 2.93 2.93 34.71 5.14
763 783 1.805945 CCGAGAAAACGCTCCGGAG 60.806 63.158 27.83 27.83 33.41 4.63
777 797 3.706055 CGGAGGAGAGGAGAGAGAG 57.294 63.158 0.00 0.00 0.00 3.20
899 929 1.222298 TCCCTATGTTACTCCCCTCCC 59.778 57.143 0.00 0.00 0.00 4.30
900 930 1.223337 CCCTATGTTACTCCCCTCCCT 59.777 57.143 0.00 0.00 0.00 4.20
901 931 2.610873 CCTATGTTACTCCCCTCCCTC 58.389 57.143 0.00 0.00 0.00 4.30
902 932 2.610873 CTATGTTACTCCCCTCCCTCC 58.389 57.143 0.00 0.00 0.00 4.30
941 971 1.218230 GCGCTCCGATCCTTGACATC 61.218 60.000 0.00 0.00 0.00 3.06
942 972 0.103026 CGCTCCGATCCTTGACATCA 59.897 55.000 0.00 0.00 0.00 3.07
943 973 1.576356 GCTCCGATCCTTGACATCAC 58.424 55.000 0.00 0.00 0.00 3.06
944 974 1.134699 GCTCCGATCCTTGACATCACA 60.135 52.381 0.00 0.00 0.00 3.58
945 975 2.544685 CTCCGATCCTTGACATCACAC 58.455 52.381 0.00 0.00 0.00 3.82
946 976 1.135112 TCCGATCCTTGACATCACACG 60.135 52.381 0.00 0.00 0.00 4.49
1095 1127 2.774799 CGCTGCCATGTTTAGCCCC 61.775 63.158 7.30 0.00 34.02 5.80
1107 1139 2.941563 TTAGCCCCTACTCGAGCCCC 62.942 65.000 13.61 0.00 0.00 5.80
1162 1196 1.204704 CCTGGTACGTGAAGCTCATGA 59.795 52.381 0.00 0.00 36.89 3.07
1185 1219 4.202050 ACATGTTGCTTGTTTCTCTTGTCC 60.202 41.667 0.00 0.00 0.00 4.02
1207 1241 3.599046 GCGATCGAATTCTGATTGCTT 57.401 42.857 27.38 7.31 45.68 3.91
1210 1244 4.260538 GCGATCGAATTCTGATTGCTTTCT 60.261 41.667 27.38 5.78 45.68 2.52
1224 1258 2.094182 TGCTTTCTACTGTAGGGCGAAG 60.094 50.000 14.47 13.25 0.00 3.79
1344 1378 3.670377 GGTGGCGCTGGTTTGGTC 61.670 66.667 7.64 0.00 0.00 4.02
1349 1383 1.315257 GGCGCTGGTTTGGTCATGAT 61.315 55.000 7.64 0.00 0.00 2.45
1368 1402 3.932710 TGATCATGCTAACCTTTGTCGTC 59.067 43.478 0.00 0.00 0.00 4.20
1369 1403 2.333926 TCATGCTAACCTTTGTCGTCG 58.666 47.619 0.00 0.00 0.00 5.12
1370 1404 2.066262 CATGCTAACCTTTGTCGTCGT 58.934 47.619 0.00 0.00 0.00 4.34
1411 1445 0.320421 TGGCGTCAAGAAGCAGGTAC 60.320 55.000 10.00 0.00 37.55 3.34
2221 2255 2.722201 GGACCAGGTAGCGTCCCAG 61.722 68.421 7.54 0.00 42.39 4.45
2287 2321 3.808656 GACCGGTCCGTCTCCGTC 61.809 72.222 24.75 6.20 45.63 4.79
2298 2332 3.288290 CTCCGTCGCCGATAGCCT 61.288 66.667 0.00 0.00 38.78 4.58
2482 2516 2.260743 GACCGGAAGACCCACGAC 59.739 66.667 9.46 0.00 34.14 4.34
2513 2547 4.689345 ACGAGGCAATCAACACTTACTTAC 59.311 41.667 0.00 0.00 0.00 2.34
2613 2653 0.967887 CCCTGACGAGAGGAAGCTGA 60.968 60.000 6.11 0.00 34.69 4.26
3047 3087 2.027314 CGCTGGAGCAGGAGATCG 59.973 66.667 0.00 0.00 42.21 3.69
3307 3347 2.033757 CAGAGCAAGTGCAGGGCT 59.966 61.111 6.00 6.40 45.16 5.19
3359 3399 1.747709 CAGTGCTCTTCCATTCAGGG 58.252 55.000 0.00 0.00 38.24 4.45
3383 3423 3.240134 GAGTCGGGACAGCTTGCCA 62.240 63.158 1.17 0.00 34.56 4.92
3434 3474 8.487313 AACTTTTTACTTGTGGAATTGGAAAC 57.513 30.769 0.00 0.00 0.00 2.78
3482 3522 2.831333 CCATGGATGTAGTGACTGCTC 58.169 52.381 5.56 0.00 0.00 4.26
3521 3561 4.964593 AGCAATGTTGAAAGGCTTGAATT 58.035 34.783 0.00 0.00 0.00 2.17
3556 3596 3.251729 CAGGTTCAGGTGTTCATTCAGTG 59.748 47.826 0.00 0.00 0.00 3.66
3561 3601 2.554032 CAGGTGTTCATTCAGTGGAACC 59.446 50.000 7.89 0.00 42.04 3.62
3618 3664 7.456725 ACTGCCAAGATATGCATAGTTTATCT 58.543 34.615 12.79 7.77 36.79 1.98
3619 3665 8.597167 ACTGCCAAGATATGCATAGTTTATCTA 58.403 33.333 12.79 0.00 36.79 1.98
3665 3711 1.615392 CTTTAGGCTTGGCTTGCTGTT 59.385 47.619 1.22 0.00 0.00 3.16
3673 3719 1.592400 GGCTTGCTGTTGTTGCACC 60.592 57.895 0.00 0.00 40.40 5.01
3710 4040 8.671384 AGTTTTACACTTTAGCTACATGTCAA 57.329 30.769 0.00 1.70 27.32 3.18
3762 4120 0.037447 TTGTGGCCGTTGGATCATGA 59.963 50.000 0.00 0.00 0.00 3.07
3773 4131 5.276270 CGTTGGATCATGATTTGTGATTCC 58.724 41.667 10.14 5.21 36.49 3.01
3783 4141 8.805175 TCATGATTTGTGATTCCTGTGTTTTAT 58.195 29.630 0.00 0.00 0.00 1.40
3784 4142 9.426837 CATGATTTGTGATTCCTGTGTTTTATT 57.573 29.630 0.00 0.00 0.00 1.40
3822 4180 2.521465 TGGCTGTGTTGGGCTTGG 60.521 61.111 0.00 0.00 0.00 3.61
3823 4181 2.521708 GGCTGTGTTGGGCTTGGT 60.522 61.111 0.00 0.00 0.00 3.67
3868 5601 1.071471 CAGTCCTTGGGCTCGTTGT 59.929 57.895 0.00 0.00 0.00 3.32
3887 5620 2.171725 GGTGCCCGTTATGCTCGAC 61.172 63.158 0.00 0.00 0.00 4.20
3980 5713 0.038166 GGGTGCCCTCAATCACTTCA 59.962 55.000 0.00 0.00 33.91 3.02
3994 5727 0.318762 ACTTCACCTCCTCTGTTCGC 59.681 55.000 0.00 0.00 0.00 4.70
4002 5735 1.216710 CCTCTGTTCGCCACTCTCC 59.783 63.158 0.00 0.00 0.00 3.71
4017 5750 2.151202 CTCTCCCTCGCTCTATGTCTC 58.849 57.143 0.00 0.00 0.00 3.36
4021 5754 1.477740 CCCTCGCTCTATGTCTCCTCA 60.478 57.143 0.00 0.00 0.00 3.86
4088 5821 4.832823 TGTGATTTCCCCCTTCTTTTCTTC 59.167 41.667 0.00 0.00 0.00 2.87
4093 5826 6.463053 TTTCCCCCTTCTTTTCTTCAGATA 57.537 37.500 0.00 0.00 0.00 1.98
4096 5829 5.731187 TCCCCCTTCTTTTCTTCAGATATGA 59.269 40.000 0.00 0.00 0.00 2.15
4121 5854 3.994392 GAGTTCTGCGGTTATTTGTCAGA 59.006 43.478 0.00 0.00 32.58 3.27
4129 5862 4.631813 GCGGTTATTTGTCAGATCTTGAGT 59.368 41.667 0.00 0.00 36.21 3.41
4131 5864 6.537566 CGGTTATTTGTCAGATCTTGAGTTG 58.462 40.000 0.00 0.00 36.21 3.16
4158 5891 3.936564 TGTTGTTCTTTTGCAGGCTTTT 58.063 36.364 0.00 0.00 0.00 2.27
4200 5933 3.421844 GTTAGGGTTCTTGTGCTCCATT 58.578 45.455 0.00 0.00 0.00 3.16
4201 5934 4.566907 GGTTAGGGTTCTTGTGCTCCATTA 60.567 45.833 0.00 0.00 0.00 1.90
4271 6004 5.220815 CCATGATTTGGTTTTTGTGGTGTTG 60.221 40.000 0.00 0.00 40.99 3.33
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
47 48 4.431131 ATGCGAGGGGCCTGGTTG 62.431 66.667 0.84 0.00 42.61 3.77
84 85 3.746492 AGACTACGGAACTGTGAAATTGC 59.254 43.478 0.00 0.00 0.00 3.56
85 86 7.288672 GTTTAGACTACGGAACTGTGAAATTG 58.711 38.462 0.00 0.00 0.00 2.32
211 212 2.125229 ACGAGCGCCTCTACGAGA 60.125 61.111 2.29 0.00 34.06 4.04
222 226 2.094539 CGTGCACATTGACGAGCG 59.905 61.111 18.64 0.00 37.81 5.03
300 308 7.232737 AGAGGACCGAAATTTTAAGACCAAAAT 59.767 33.333 0.00 0.00 39.26 1.82
330 338 2.166664 ACTATCCTTTCTGCTCACGGAC 59.833 50.000 0.00 0.00 0.00 4.79
422 433 1.303643 CCAGGGGTTGCTTGGAGTC 60.304 63.158 0.00 0.00 33.76 3.36
478 495 2.032071 AAGTCGGGGCTTCAACGG 59.968 61.111 0.00 0.00 0.00 4.44
490 507 0.591741 GTACGATGGCCGAGAAGTCG 60.592 60.000 0.00 3.62 46.39 4.18
571 591 4.660789 ATCCTTGATGCAAGTAATTGGC 57.339 40.909 4.91 0.00 39.58 4.52
643 663 1.006102 GTCGTCCAGTCACCACCAG 60.006 63.158 0.00 0.00 0.00 4.00
672 692 4.765339 GTCAACACTAGTTTAAGCCCCAAT 59.235 41.667 0.00 0.00 35.28 3.16
673 693 4.139038 GTCAACACTAGTTTAAGCCCCAA 58.861 43.478 0.00 0.00 35.28 4.12
674 694 3.497227 GGTCAACACTAGTTTAAGCCCCA 60.497 47.826 0.00 0.00 35.28 4.96
675 695 3.079578 GGTCAACACTAGTTTAAGCCCC 58.920 50.000 0.00 0.00 35.28 5.80
758 778 0.108585 CTCTCTCTCCTCTCCTCCGG 59.891 65.000 0.00 0.00 0.00 5.14
759 779 0.108585 CCTCTCTCTCCTCTCCTCCG 59.891 65.000 0.00 0.00 0.00 4.63
761 781 3.884037 AATCCTCTCTCTCCTCTCCTC 57.116 52.381 0.00 0.00 0.00 3.71
762 782 4.981647 TCTTAATCCTCTCTCTCCTCTCCT 59.018 45.833 0.00 0.00 0.00 3.69
763 783 5.319043 TCTTAATCCTCTCTCTCCTCTCC 57.681 47.826 0.00 0.00 0.00 3.71
764 784 6.265422 CCTTTCTTAATCCTCTCTCTCCTCTC 59.735 46.154 0.00 0.00 0.00 3.20
765 785 6.136155 CCTTTCTTAATCCTCTCTCTCCTCT 58.864 44.000 0.00 0.00 0.00 3.69
766 786 5.897250 ACCTTTCTTAATCCTCTCTCTCCTC 59.103 44.000 0.00 0.00 0.00 3.71
767 787 5.849140 ACCTTTCTTAATCCTCTCTCTCCT 58.151 41.667 0.00 0.00 0.00 3.69
769 789 5.815222 GCAACCTTTCTTAATCCTCTCTCTC 59.185 44.000 0.00 0.00 0.00 3.20
770 790 5.249393 TGCAACCTTTCTTAATCCTCTCTCT 59.751 40.000 0.00 0.00 0.00 3.10
776 796 4.003648 CTCGTGCAACCTTTCTTAATCCT 58.996 43.478 0.00 0.00 0.00 3.24
777 797 3.127030 CCTCGTGCAACCTTTCTTAATCC 59.873 47.826 0.00 0.00 0.00 3.01
899 929 2.672961 TAAGGATGTTGAGTGCGGAG 57.327 50.000 0.00 0.00 0.00 4.63
900 930 4.631131 CATATAAGGATGTTGAGTGCGGA 58.369 43.478 0.00 0.00 0.00 5.54
901 931 3.187227 GCATATAAGGATGTTGAGTGCGG 59.813 47.826 0.00 0.00 0.00 5.69
902 932 3.120889 CGCATATAAGGATGTTGAGTGCG 60.121 47.826 0.00 0.00 45.12 5.34
941 971 0.982673 GCGTGCTAGTACTTCGTGTG 59.017 55.000 9.40 0.00 0.00 3.82
942 972 0.879765 AGCGTGCTAGTACTTCGTGT 59.120 50.000 9.40 0.00 0.00 4.49
943 973 1.260206 CAGCGTGCTAGTACTTCGTG 58.740 55.000 9.40 0.00 0.00 4.35
944 974 0.456312 GCAGCGTGCTAGTACTTCGT 60.456 55.000 9.40 0.00 40.96 3.85
945 975 1.140407 GGCAGCGTGCTAGTACTTCG 61.140 60.000 9.40 3.02 44.28 3.79
946 976 0.173708 AGGCAGCGTGCTAGTACTTC 59.826 55.000 9.40 1.14 44.28 3.01
998 1030 3.556633 CCTCCCAATCATCTTCTCCATCG 60.557 52.174 0.00 0.00 0.00 3.84
1095 1127 2.496817 GTGCTGGGGCTCGAGTAG 59.503 66.667 15.13 8.77 39.59 2.57
1162 1196 4.202050 GGACAAGAGAAACAAGCAACATGT 60.202 41.667 0.00 0.00 0.00 3.21
1185 1219 1.397693 GCAATCAGAATTCGATCGCCG 60.398 52.381 11.09 0.00 40.25 6.46
1207 1241 2.025605 TCTCCTTCGCCCTACAGTAGAA 60.026 50.000 9.38 0.00 0.00 2.10
1210 1244 1.684248 GGTCTCCTTCGCCCTACAGTA 60.684 57.143 0.00 0.00 0.00 2.74
1344 1378 4.333649 ACGACAAAGGTTAGCATGATCATG 59.666 41.667 28.04 28.04 41.60 3.07
1349 1383 2.288579 ACGACGACAAAGGTTAGCATGA 60.289 45.455 0.00 0.00 0.00 3.07
1368 1402 3.458579 CCTGCAACGACGACGACG 61.459 66.667 17.60 17.60 42.66 5.12
1369 1403 1.403972 GATCCTGCAACGACGACGAC 61.404 60.000 15.32 3.64 42.66 4.34
1370 1404 1.154093 GATCCTGCAACGACGACGA 60.154 57.895 15.32 0.00 42.66 4.20
1411 1445 1.523258 CTCCATCGCCTGGCTGAAG 60.523 63.158 17.92 12.11 45.52 3.02
1477 1511 1.511305 GATCACCTCGAAGGCGTCA 59.489 57.895 0.55 0.00 39.63 4.35
1564 1598 2.261671 CCCACGTCCAGGAACTCG 59.738 66.667 0.00 0.00 34.60 4.18
2285 2319 2.336809 CTCCAGGCTATCGGCGAC 59.663 66.667 13.76 0.00 42.94 5.19
2286 2320 2.912542 CCTCCAGGCTATCGGCGA 60.913 66.667 13.87 13.87 42.94 5.54
2287 2321 3.227276 ACCTCCAGGCTATCGGCG 61.227 66.667 0.00 0.00 42.94 6.46
2288 2322 2.423446 CACCTCCAGGCTATCGGC 59.577 66.667 0.00 0.00 39.32 5.54
2298 2332 0.692476 CTCCATTGTCACCACCTCCA 59.308 55.000 0.00 0.00 0.00 3.86
2437 2471 0.731514 GAACGACGCCGATCAGTTCA 60.732 55.000 0.00 0.00 40.41 3.18
2465 2499 2.260743 GTCGTGGGTCTTCCGGTC 59.739 66.667 0.00 0.00 38.76 4.79
2482 2516 4.449068 GTGTTGATTGCCTCGTATAGATGG 59.551 45.833 0.00 0.00 0.00 3.51
2613 2653 1.676916 CCTGCCATGACACAGAATCGT 60.677 52.381 10.75 0.00 35.90 3.73
2644 2684 3.708220 CTTCTCCTCGCCGGACAGC 62.708 68.421 5.05 0.00 36.69 4.40
3047 3087 0.892063 AGGGTCTTCTTCAGCGAGAC 59.108 55.000 0.00 0.00 39.19 3.36
3359 3399 2.888863 CTGTCCCGACTCCTGAGC 59.111 66.667 0.00 0.00 0.00 4.26
3434 3474 1.236616 TTTCACCGTGGCATCTGCAG 61.237 55.000 7.63 7.63 44.36 4.41
3459 3499 2.558378 CAGTCACTACATCCATGGCTG 58.442 52.381 14.08 14.08 39.50 4.85
3482 3522 7.019774 ACATTGCTAGCAGTATGTACAAATG 57.980 36.000 26.30 20.16 39.31 2.32
3521 3561 3.576982 CCTGAACCTGACAGTAACTACCA 59.423 47.826 0.93 0.00 34.04 3.25
3556 3596 3.876589 TTCACCTCGCGCTGGTTCC 62.877 63.158 18.51 0.00 35.28 3.62
3561 3601 3.114616 CCACTTCACCTCGCGCTG 61.115 66.667 5.56 0.00 0.00 5.18
3585 3625 3.728864 GCATATCTTGGCAGTTGTTGACG 60.729 47.826 0.00 0.00 37.78 4.35
3586 3626 3.191162 TGCATATCTTGGCAGTTGTTGAC 59.809 43.478 0.00 0.00 34.58 3.18
3587 3627 3.419943 TGCATATCTTGGCAGTTGTTGA 58.580 40.909 0.00 0.00 34.58 3.18
3588 3628 3.853831 TGCATATCTTGGCAGTTGTTG 57.146 42.857 0.00 0.00 34.58 3.33
3589 3629 5.195940 ACTATGCATATCTTGGCAGTTGTT 58.804 37.500 6.92 0.00 44.24 2.83
3665 3711 0.598562 AAACACAACACGGTGCAACA 59.401 45.000 8.30 0.00 42.55 3.33
3673 3719 7.784790 AAAGTGTAAAACTAAACACAACACG 57.215 32.000 8.18 0.00 46.71 4.49
3710 4040 7.278875 TGACCAAAATTTAAAACTCAGGCAAT 58.721 30.769 0.00 0.00 0.00 3.56
3791 4149 2.086869 ACAGCCACAATCATACACAGC 58.913 47.619 0.00 0.00 0.00 4.40
3795 4153 2.819019 CCAACACAGCCACAATCATACA 59.181 45.455 0.00 0.00 0.00 2.29
3822 4180 0.320374 TTGGGGTCAGTCGATCACAC 59.680 55.000 0.00 0.00 34.58 3.82
3823 4181 1.275666 ATTGGGGTCAGTCGATCACA 58.724 50.000 0.00 0.00 32.28 3.58
3875 5608 1.937846 CGGGTCGTCGAGCATAACG 60.938 63.158 24.40 15.06 40.17 3.18
3887 5620 2.194271 GCTCAGAAGATTAACGGGTCG 58.806 52.381 0.00 0.00 0.00 4.79
3917 5650 0.395862 AGACGATCCACCTCCACGAT 60.396 55.000 0.00 0.00 0.00 3.73
3972 5705 2.232452 CGAACAGAGGAGGTGAAGTGAT 59.768 50.000 0.00 0.00 0.00 3.06
3980 5713 1.534235 AGTGGCGAACAGAGGAGGT 60.534 57.895 0.00 0.00 0.00 3.85
3994 5727 0.958091 CATAGAGCGAGGGAGAGTGG 59.042 60.000 0.00 0.00 0.00 4.00
4002 5735 1.974265 TGAGGAGACATAGAGCGAGG 58.026 55.000 0.00 0.00 0.00 4.63
4017 5750 1.825281 GCTCGGATGGGGAGATGAGG 61.825 65.000 0.00 0.00 33.27 3.86
4021 5754 0.252012 CCTAGCTCGGATGGGGAGAT 60.252 60.000 0.00 0.00 33.27 2.75
4088 5821 4.375272 ACCGCAGAACTCAATCATATCTG 58.625 43.478 0.00 0.00 40.30 2.90
4093 5826 5.415701 ACAAATAACCGCAGAACTCAATCAT 59.584 36.000 0.00 0.00 0.00 2.45
4096 5829 4.759693 TGACAAATAACCGCAGAACTCAAT 59.240 37.500 0.00 0.00 0.00 2.57
4121 5854 7.396540 AGAACAACAAAGAACAACTCAAGAT 57.603 32.000 0.00 0.00 0.00 2.40
4129 5862 5.407995 CCTGCAAAAGAACAACAAAGAACAA 59.592 36.000 0.00 0.00 0.00 2.83
4131 5864 4.201714 GCCTGCAAAAGAACAACAAAGAAC 60.202 41.667 0.00 0.00 0.00 3.01
4158 5891 2.916052 AAAGCACCGTCGAGAGCGA 61.916 57.895 0.00 0.00 45.71 4.93
4271 6004 6.378582 CAAAACACCTAACCATACATGACAC 58.621 40.000 0.00 0.00 0.00 3.67


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.